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Pregenerated sensors for COX7A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074218

Ensembl transcript IDs: ENSMUST00000098594.4, ENSMUST00000208441.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGGAAGGTGGATTAGAACAGAGACACACAGGCTGGAGCCGGGTTaGGTTCTCAAGAGATTAGCATATTTATTGATGTTTGTCCAAGTC +
Preference number: 1 (lower is better)
Translates to: VGRWIRTETHRLEPG*VLKRLAYLLMFVQV
Trigger: GACTTGGACAAACATCAATAAATATGCTAATCTCTTGAGAACCCAACCCGGCTCCAGCCTGTGTGTCTCTGTTCTAATCCACCTTCCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208441.2
CDS-3UTR GCA 90 bp GGAAGGTGGATTAGAACAGAGACACACAGGCTGGAGCCGGGTTGGGTTCTCAAGGCCTGGAAGAGCTTCTaGTTCTCTGCCACACGGTTT +
Preference number: 4 (lower is better)
Translates to: GRWIRTETHRLEPGWVLKAWKSF*FSATRF
Trigger: AAACCGTGTGGCAGAGAAGCAGAAGCTCTTCCAGGC...CTTGAGAACCCAACCCGGCTCCAGCCTGTGTGTCTCTGTTCTAATCCACCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208441.2
CDS-3UTR CCA 90 bp GAAGGTGGATTAGAACAGAGACACACAGGCTGGAGCCGGGTTGGGTTCTCAAGAGACCGGACCAGAGCCTaGGAGACCTGTTCTAAGACT +
Preference number: 4 (lower is better)
Translates to: EGGLEQRHTGWSRVGFSRDRTRA*ETCSKT
Trigger: AGTCTTAGAACAGGTCTCCCAGGCTCTGGTCCGGTC...TCTTGAGAACCCAACCCGGCTCCAGCCTGTGTGTCTCTGTTCTAATCCACCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208441.2
CDS-3UTR CCA 90 bp AGGTGGATTAGAACAGAGACACACAGGCTGGAGCCGGGTTGGGTTCTCAAGAGACCAGAGTCAGCGTCATaGTCAGTCTGTACAGGACGT +
Preference number: 4 (lower is better)
Translates to: RWIRTETHRLEPGWVLKRPESAS*SVCTGR
Trigger: ACGTCCTGTACAGACTGACCATGACGCTGACTCTGG...TCTCTTGAGAACCCAACCCGGCTCCAGCCTGTGTGTCTCTGTTCTAATCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208441.2
CDS-3UTR CCA 90 bp GGTGGATTAGAACAGAGACACACAGGCTGGAGCCGGGTTGGGTTCTCAAGAGATACACGGTTTTCTAAGTaGCTTCTGGTAGATGAGCTA +
Preference number: 4 (lower is better)
Translates to: GGLEQRHTGWSRVGFSRDTRFSK*LLVDEL
Trigger: TAGCTCATCTACCAGAAGCCACTTAGAAAACCGTGT...ATCTCTTGAGAACCCAACCCGGCTCCAGCCTGTGTGTCTCTGTTCTAATCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208441.2
CDS GCA 90 bp TGTGGGGGAAGGAGGCCCAGCCCAAGCAGTATAAGCAGTAGGCAGTaGCCCCCAGAGTCAGCGTCATGGTCAGTCTGTACAGGACGTTGT +
Preference number: 5 (lower is better)
Translates to: CGGRRPSPSSISSRQ*PPESASWSVCTGRC
Trigger: ACAACGTCCTGTACAGACTGACCATGACGCTGACTCTGGGGGGCACTGCCTACTGCTTATACTGCTTGGGCTGGGCCTCCTTCCCCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS CCA 90 bp TCGGCCTGGAAGAGCTTCTGCTTCTCTGCCACACGGTTTTCTAAGTaGCTTCTGGTAGATGAGCTAAAAGACCGGACCAGAGCCTGGGAG +
Preference number: 5 (lower is better)
Translates to: SAWKSFCFSATRFSK*LLVDELKDRTRAWE
Trigger: CTCCCAGGCTCTGGTCCGGTCTTTTAGCTCATCTACCAGAAGCCACTTAGAAAACCGTGTGGCAGAGAAGCAGAAGCTCTTCCAGGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS GCA 72 bp AGGAGGCCCAGCCCAAGCAGTATAAGCAGTAGGCAGTaGCCCCCAGAGTCAGCGTCATGGTCAGTCTGTACA +
Preference number: 6 (lower is better)
Translates to: RRPSPSSISSRQ*PPESASWSVCT
Trigger: TGTACAGACTGACCATGACGCTGACTCTGGGGGGCACTGCCTACTGCTTATACTGCTTGGGCTGGGCCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS CAA 72 bp TCCATTCCCCCGCCTTTCAAGTGTACTGGGAGGTCATaGTCGGCCTGGAAGAGCTTCTGCTTCTCTGCCACA +
Preference number: 6 (lower is better)
Translates to: SIPPPFKCTGRS*SAWKSFCFSAT
Trigger: TGTGGCAGAGAAGCAGAAGCTCTTCCAGGCCGACAATGACCTCCCAGTACACTTGAAAGGCGGGGGAATGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS CAA 90 bp AGGACGTTGTCCATTCCCCCGCCTTTCAAGTGTACTGGGAGGTCATaGTCGGCCTGGAAGAGCTTCTGCTTCTCTGCCACACGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: RTLSIPPPFKCTGRS*SAWKSFCFSATRFS
Trigger: AGAAAACCGTGTGGCAGAGAAGCAGAAGCTCTTCCAGGCCGACAATGACCTCCCAGTACACTTGAAAGGCGGGGGAATGGACAACGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS CCA 72 bp CCGCCTTTCAAGTGTACTGGGAGGTCATTGTCGGCCTaGAAGAGCTTCTGCTTCTCTGCCACACGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: PPFKCTGRSLSA*KSFCFSATRFS
Trigger: AGAAAACCGTGTGGCAGAGAAGCAGAAGCTCTTCCAGGCCGACAATGACCTCCCAGTACACTTGAAAGGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS GCA 72 bp TGTACTGGGAGGTCATTGTCGGCCTGGAAGAGCTTCTaGTTCTCTGCCACACGGTTTTCTAAGTGGCTTCTG +
Preference number: 6 (lower is better)
Translates to: CTGRSLSAWKSF*FSATRFSKWLL
Trigger: CAGAAGCCACTTAGAAAACCGTGTGGCAGAGAAGCAGAAGCTCTTCCAGGCCGACAATGACCTCCCAGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2
CDS CCA 72 bp AAGAGCTTCTGCTTCTCTGCCACACGGTTTTCTAAGTaGCTTCTGGTAGATGAGCTAAAAGACCGGACCAGA +
Preference number: 6 (lower is better)
Translates to: KSFCFSATRFSK*LLVDELKDRTR
Trigger: TCTGGTCCGGTCTTTTAGCTCATCTACCAGAAGCCACTTAGAAAACCGTGTGGCAGAGAAGCAGAAGCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098594.4
ENSMUST00000208441.2