Pregenerated sensors for COX6C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014313Ensembl transcript IDs: ENSMUST00000155638.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATGGCCTTGGATGTGGTTCTGGTGAGGGGTTCAGGCCAAGAGCATaGAGGGTGCTTGCTGCTGACATCAGAAGTACTCTTTGTTGTAAG | + |
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Preference number: 1 (lower is better) Translates to: HGLGCGSGEGFRPRA*RVLAADIRSTLCCK Trigger: CTTACAACAAAGAGTACTTCTGATGTCAGCAGCAAGCACCCTTCATGCTCTTGGCCTGAACCCCTCACCAGAACCACATCCAAGGCCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR CAA 90 bp | AGGAAAATGCTTCAGTCTTTGGGTAGACCAGAAGTCCACATGGCCTaGGATGTGGTTCTGGTGAGGGGTTCAGGCCAAGAGCATGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: RKMLQSLGRPEVHMA*DVVLVRGSGQEHEG Trigger: CCCTTCATGCTCTTGGCCTGAACCCCTCACCAGAACCACATCCAAGGCCATGTGGACTTCTGGTCTACCCAAAGACTGAAGCATTTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR CAA 90 bp | GATGTGGTTCTGGTGAGGGGTTCAGGCCAAGAGCATGAAGGGTGCTaGCTGCTGACATCAGAAGTACTCTTTGTTGTAAGCATCAGTGAA | + |
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Preference number: 2 (lower is better) Translates to: DVVLVRGSGQEHEGC*LLTSEVLFVVSISE Trigger: TTCACTGATGCTTACAACAAAGAGTACTTCTGATGTCAGCAGCAAGCACCCTTCATGCTCTTGGCCTGAACCCCTCACCAGAACCACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR-3UTR TCA 90 bp | ATAAACAGTGAAAGCTGTTGTGAAGGTCTTTCTGGCTTGCTCTTGACCTCTTCTTTCAGGCCAAGAGCATaGAGGGTGCTTGCTGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: INSESCCEGLSGLLLTSSFRPRA*RVLAAD Trigger: GTCAGCAGCAAGCACCCTTCATGCTCTTGGCCTGAA...AGAAGAGGTCAAGAGCAAGCCAGAAAGACCTTCACAACAGCTTTCACTGTTTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR-3UTR CCA 90 bp | CCCCATCACAGAGATCAGCTGTGCACAGGACACCAAGCAAAACAACCTACTCACAGCAATGAACTTCTTTaGAGCGCAATCCAAAGAATT | + |
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Preference number: 2 (lower is better) Translates to: PHHRDQLCTGHQAKQPTHSNELL*SAIQRI Trigger: AATTCTTTGGATTGCGCTCCAAAGAAGTTCATTGCT...GTGAGTAGGTTGTTTTGCTTGGTGTCCTGTGCACAGCTGATCTCTGTGATGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR TCA 72 bp | GACCAGAAGTCCACATGGCCTTGGATGTGGTTCTGGTaGGGGGTTCAGGCCAAGAGCATGAAGGGTGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: DQKSTWPWMWFW*GVQAKSMKGAC Trigger: GCAAGCACCCTTCATGCTCTTGGCCTGAACCCCTCACCAGAACCACATCCAAGGCCATGTGGACTTCTGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR TCA 72 bp | GGATGTGGTTCTGGTGAGGGGTTCAGGCCAAGAGCATaGAGGGTGCTTGCTGCTGACATCAGAAGTACTCTT | + |
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Preference number: 3 (lower is better) Translates to: GCGSGEGFRPRA*RVLAADIRSTL Trigger: AAGAGTACTTCTGATGTCAGCAGCAAGCACCCTTCATGCTCTTGGCCTGAACCCCTCACCAGAACCACATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR GCA 72 bp | ACAACAACAAGCCTTCCCCATCACAGAGATCAGCTGTaGACAGGACACCAAGCAAAACAACCTACTCACTGT | + |
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Preference number: 3 (lower is better) Translates to: TTTSLPHHRDQL*TGHQAKQPTHC Trigger: ACAGTGAGTAGGTTGTTTTGCTTGGTGTCCTGTGCACAGCTGATCTCTGTGATGGGGAAGGCTTGTTGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR-3UTR CAA 90 bp | ACACACAACAACAAGCCTTCCCCATCACAGAGATCAGCTGTGCACAGGACACCACTAGCTTTTAGGAAGTaGAGATGTAGCCTCATCACT | + |
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Preference number: 3 (lower is better) Translates to: THNNKPSPSQRSAVHRTPLAFRK*RCSLIT Trigger: AGTGATGAGGCTACATCTCAACTTCCTAAAAGCTAG...TGGTGTCCTGTGCACAGCTGATCTCTGTGATGGGGAAGGCTTGTTGTTGTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR-3UTR CAA 90 bp | ATAAACAGTGAAAGCTGTTGTGAAGGTCTTTCTGGCTTGCTCTTGACCTCTTCTAAAATGCTTCAGTCTTaGGGTAGACCAGAAGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: INSESCCEGLSGLLLTSSKMLQS*GRPEVH Trigger: GTGGACTTCTGGTCTACCCAAAGACTGAAGCATTTT...AGAAGAGGTCAAGAGCAAGCCAGAAAGACCTTCACAACAGCTTTCACTGTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR CAA 72 bp | CTTCAGTCTTTGGGTAGACCAGAAGTCCACATGGCCTaGGATGTGGTTCTGGTGAGGGGTTCAGGCCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LQSLGRPEVHMA*DVVLVRGSGQE Trigger: CTCTTGGCCTGAACCCCTCACCAGAACCACATCCAAGGCCATGTGGACTTCTGGTCTACCCAAAGACTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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| 3UTR CAA 72 bp | CTGGTGAGGGGTTCAGGCCAAGAGCATGAAGGGTGCTaGCTGCTGACATCAGAAGTACTCTTTGTTGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: LVRGSGQEHEGC*LLTSEVLFVVS Trigger: GCTTACAACAAAGAGTACTTCTGATGTCAGCAGCAAGCACCCTTCATGCTCTTGGCCTGAACCCCTCACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155638.8 |
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