Pregenerated sensors for COX6B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051811Ensembl transcript IDs: ENSMUST00000063324.14, ENSMUST00000182048.2, ENSMUST00000182111.8, ENSMUST00000182173.2, ENSMUST00000182738.8, ENSMUST00000183334.8, ENSMUST00000183971.8, ENSMUST00000184143.8
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TATTTGTGGCACAAAGACAAAGTGGAGGGAGGGGGTGACCCAGGCTaGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: YLWHKDKVEGGGDPG*GLMKGQPLGVDDAR Trigger: CCTGGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACCCCCTCCCTCCACTTTGTCTTTGTGCCACAAATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183334.8 ENSMUST00000183971.8 ENSMUST00000184143.8 |
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| 3UTR GCA 90 bp | AGCAGCGCTCAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTaGTTGATCTGCTCATTCCAGCGCTGCACCCAGCTGATGGGACAC | + |
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Preference number: 1 (lower is better) Translates to: SSAQVQGHILPGKVP*LICSFQRCTQLMGH Trigger: GTGTCCCATCAGCTGGGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTGAGCGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| 3UTR GCA 90 bp | CAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTTGATCTaGTCATTCCAGCGCTGCACCCAGCTGATGGGACACAGTGAATGG | + |
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Preference number: 1 (lower is better) Translates to: QVQGHILPGKVPCLI*SFQRCTQLMGHSEW Trigger: CCATTCACTGTGTCCCATCAGCTGGGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCAGTGGAGGGAGGGGGTaGCCCAGGCTGGGGCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: GDPGWGLMKGQPLGVDDASGGRG*PRLGLD Trigger: ATCAAGCCCCAGCCTGGGTCACCCCCTCCCTCCACT...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 5 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183334.8 ENSMUST00000183971.8 ENSMUST00000184143.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCGGGGGTGACCCAGGCTaGGGCTTGATGAAAGGACAG | + |
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Preference number: 2 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAGGDPG*GLMKGQ Trigger: CTGTCCTTTCATCAAGCCCCAGCCTGGGTCACCCCC...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183334.8 ENSMUST00000183971.8 ENSMUST00000184143.8 |
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| 3UTR GCA 72 bp | CAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTaGTTGATCTGCTCATTCCAGCGCTGCACCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QVQGHILPGKVP*LICSFQRCTQL Trigger: CAGCTGGGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| 3UTR TCA 72 bp | CTCATTCCAGCGCTGCACCCAGCTGATGGGACACAGTaGATGGAATACACGGAAATAGTACTCGCAGGGTTG | + |
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Preference number: 3 (lower is better) Translates to: LIPALHPADGTQ*MEYTEIVLAGL Trigger: CAACCCTGCGAGTACTATTTCCGTGTATTCCATTCACTGTGTCCCATCAGCTGGGTGCAGCGCTGGAATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| 3UTR GCA 72 bp | GGGAAAGTTCCCTGCTTGATCTGCTCATTCCAGCGCTaGACCCAGCTGATGGGACACAGTGAATGGAATACA | + |
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Preference number: 3 (lower is better) Translates to: GKVPCLICSFQR*TQLMGHSEWNT Trigger: TGTATTCCATTCACTGTGTCCCATCAGCTGGGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| CDS-3UTR GCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCGTTCCCTGCTTGATCTaGTCATTCCAGCGCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAVPCLI*SFQRCT Trigger: GGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAAC...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 |
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| CDS-3UTR TCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCGGAAAGTTCCCTGCTTaGTCTGCTCATTCCAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAGKFPA*SAHSSA Trigger: AGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCC...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183971.8 |
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| CDS-3UTR GCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCGTTCCCTGCTTGATCTaGTCATTCCAGCGCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAVPCLI*SFQRCT Trigger: TGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAAC...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183971.8 |
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| CDS-3UTR CCA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCTTACGCGTCTGGTTCTaGTTAGGGAAGCGCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: GDPGWGLMKGQPLGVDDALRVWF*LGKRGS Trigger: TGATCCGCGCTTCCCTAACCAGAACCAGACGCGTAA...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183334.8 ENSMUST00000183971.8 ENSMUST00000184143.8 |
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| CDS-3UTR CCA 90 bp | AGCAGCGCTCAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTTGATCTTACGCGTCTGGTTCTaGTTAGGGAAGCGCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: SSAQVQGHILPGKVPCLILRVWF*LGKRGS Trigger: TGATCCGCGCTTCCCTAACCAGAACCAGACGCGTAA...GATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTGAGCGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000183334.8 ENSMUST00000184143.8 |
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| CDS-3UTR GCA 90 bp | AGCAGCGCTCAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTTGATCACACCGGTGGTAGTCTaGAGAGTGCCCAGAAAATTC | + |
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Preference number: 4 (lower is better) Translates to: SSAQVQGHILPGKVPCLITPVVV*RVPRKF Trigger: GAATTTTCTGGGCACTCTGCAGACTACCACCGGTGT...GATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTGAGCGCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183334.8 |
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| CDS-3UTR CAA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCATAGTACTCGCAGGGTaGTGTGCTCTTTCCGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAIVLAG*CALSAA Trigger: CGCCGCGGAAAGAGCACACAACCCTGCGAGTACTAT...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183971.8 |
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| CDS-3UTR CAA 90 bp | GGTGACCCAGGCTGGGGCTTGATGAAAGGACAGCCACTAGGGGTTGATGACGCCGGGAAAGTTCCCTGCTaGATCTGCTCATTCCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: GDPGWGLMKGQPLGVDDAGKVPC*ICSFQR Trigger: GCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCC...GGCGTCATCAACCCCTAGTGGCTGTCCTTTCATCAAGCCCCAGCCTGGGTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063324.14 ENSMUST00000182111.8 ENSMUST00000183971.8 |
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| CDS GCA 90 bp | CCCTGCTTGATCTGCTCATTCCAGCGCTGCACTCGCAGGGTTGTGTaGTCTTTCCGCGGCGATTCATGGTCTTCACACACCGGTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: PCLICSFQRCTRRVV*SFRGDSWSSHTGGS Trigger: ACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS GCA 90 bp | ATTTTGCCCGGGAAAGTTCCCTGCTTGATCTGCTCATTCCAGCGCTaGACTCGCAGGGTTGTGTGCTCTTTCCGCGGCGATTCATGGTCT | + |
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Preference number: 5 (lower is better) Translates to: ILPGKVPCLICSFQR*TRRVVCSFRGDSWS Trigger: AGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS GCA 90 bp | AGCAGCGCTCAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTaGTTGATCTGCTCATTCCAGCGCTGCACTCGCAGGGTTGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: SSAQVQGHILPGKVP*LICSFQRCTRRVVC Trigger: GCACACAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTGAGCGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS GCA 90 bp | GCTCATTCCAGCGCTGCACACGGAAATAGTACTCGCAGGGTTGTGTaGTCTTTCCGCGGCGATTCATGGTCTTCACACACCGGTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: AHSSAAHGNSTRRVV*SFRGDSWSSHTGGS Trigger: ACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTGCAGCGCTGGAATGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183971.8 |
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| CDS CCA 90 bp | CAGCGCTGCACTCGCAGGGTTGTGTGCTCTTTCCGCGGCGATTCATaGTCTTCACACACCGGTGGTAGTCCAGAAAATTCTGGTAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: QRCTRRVVCSFRGDS*SSHTGGSPENSGSS Trigger: ACTGCTACCAGAATTTTCTGGACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTGCAGCGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS TCA 90 bp | TCCACCAACCCCTCTCCGCCCTCTCACCCAGCTGATGGGACACAGTaGATGGAATACACGGAAATAGTACTCGCAGGGTTGTGTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: STNPSPPSHPADGTQ*MEYTEIVLAGLCAL Trigger: AAGAGCACACAACCCTGCGAGTACTATTTCCGTGTATTCCATTCACTGTGTCCCATCAGCTGGGTGAGAGGGCGGAGAGGGGTTGGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182173.2 |
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| CDS GCA 90 bp | CAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTTGATCTaGTCATTCCAGCGCTGCACTCGCAGGGTTGTGTGCTCTTTCCGC | + |
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Preference number: 5 (lower is better) Translates to: QVQGHILPGKVPCLI*SFQRCTRRVVCSFR Trigger: GCGGAAAGAGCACACAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS CCA 90 bp | ATTCCAGCGCTGCACAGGGTTGTGTGCTCTTTCCGCGGCGATTCATaGTCTTCACACACCGGTGGTAGTCCAGAAAATTCTGGTAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: IPALHRVVCSFRGDS*SSHTGGSPENSGSS Trigger: ACTGCTACCAGAATTTTCTGGACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGTGCAGCGCTGGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184143.8 |
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| CDS GCA 90 bp | GACACAGTGAATGGAATACACGGAAATAGTACTCGCAGGGTTGTGTaGTCTTTCCGCGGCGATTCATGGTCTTCACACACCGGTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: DTVNGIHGNSTRRVV*SFRGDSWSSHTGGS Trigger: ACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTATTCCATTCACTGTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063324.14 ENSMUST00000182048.2 ENSMUST00000182111.8 ENSMUST00000182173.2 |
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| CDS CCA 90 bp | GGAAATAGTACTCGCAGGGTTGTGTGCTCTTTCCGCGGCGATTCATaGTCTTCACACACCGGTGGTAGTCCAGAAAATTCTGGTAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: GNSTRRVVCSFRGDS*SSHTGGSPENSGSS Trigger: ACTGCTACCAGAATTTTCTGGACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000063324.14 ENSMUST00000182048.2 ENSMUST00000182111.8 ENSMUST00000182173.2 ENSMUST00000183971.8 |
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| CDS GCA 72 bp | GGGAAAGTTCCCTGCTTGATCTGCTCATTCCAGCGCTaGACTCGCAGGGTTGTGTGCTCTTTCCGCGGCGAT | + |
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Preference number: 6 (lower is better) Translates to: GKVPCLICSFQR*TRRVVCSFRGD Trigger: ATCGCCGCGGAAAGAGCACACAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS CAA 90 bp | GATCTGCTCATTCCAGCGCTGCACACGGAAATAGTACTCGCAGGGTaGTGTGCTCTTTCCGCGGCGATTCATGGTCTTCACACACCGGTG | + |
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Preference number: 6 (lower is better) Translates to: DLLIPALHTEIVLAG*CALSAAIHGLHTPV Trigger: CACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTGCAGCGCTGGAATGAGCAGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183971.8 |
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| CDS TCA 72 bp | CCCTCTCCGCCCTCTCACCCAGCTGATGGGACACAGTaGATGGAATACACGGAAATAGTACTCGCAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: PSPPSHPADGTQ*MEYTEIVLAGL Trigger: CAACCCTGCGAGTACTATTTCCGTGTATTCCATTCACTGTGTCCCATCAGCTGGGTGAGAGGGCGGAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182173.2 |
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| CDS GCA 72 bp | AGCGCTGCACACGGAAATAGTACTCGCAGGGTTGTGTaGTCTTTCCGCGGCGATTCATGGTCTTCACACACC | + |
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Preference number: 6 (lower is better) Translates to: SAAHGNSTRRVV*SFRGDSWSSHT Trigger: GGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTGCAGCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183971.8 |
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| CDS TCA 72 bp | TGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTTaGTCTGCTCATTCCAGCGCTGCACTCGCAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: CKVIFCPGKFPA*SAHSSAALAGL Trigger: CAACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS GCA 72 bp | CAAGTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTaGTTGATCTGCTCATTCCAGCGCTGCACTCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: QVQGHILPGKVP*LICSFQRCTRR Trigger: CCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS CAA 72 bp | GTGCAAGGTCATATTTTGCCCGGGAAAGTTCCCTGCTaGATCTGCTCATTCCAGCGCTGCACTCGCAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: VQGHILPGKVPC*ICSFQRCTRRV Trigger: AACCCTGCGAGTGCAGCGCTGGAATGAGCAGATCAAGCAGGGAACTTTCCCGGGCAAAATATGACCTTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182738.8 |
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| CDS CAA 72 bp | ATTCCAGCGCTGCACACGGAAATAGTACTCGCAGGGTaGTGTGCTCTTTCCGCGGCGATTCATGGTCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: IPALHTEIVLAG*CALSAAIHGLH Trigger: GTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTGCAGCGCTGGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183971.8 |
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| CDS CCA 72 bp | ACTCGCAGGGTTGTGTGCTCTTTCCGCGGCGATTCATaGTCTTCACACACCGGTGGTAGTCCAGAAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: TRRVVCSFRGDS*SSHTGGSPENS Trigger: AGAATTTTCTGGACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000063324.14 ENSMUST00000182048.2 ENSMUST00000182111.8 ENSMUST00000182173.2 ENSMUST00000182738.8 ENSMUST00000183971.8 |
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| CDS CCA 72 bp | CTGCACAGGGTTGTGTGCTCTTTCCGCGGCGATTCATaGTCTTCACACACCGGTGGTAGTCCAGAAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LHRVVCSFRGDS*SSHTGGSPENS Trigger: AGAATTTTCTGGACTACCACCGGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184143.8 |
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| CDS GCA 72 bp | AATGGAATACACGGAAATAGTACTCGCAGGGTTGTGTaGTCTTTCCGCGGCGATTCATGGTCTTCACACACC | + |
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Preference number: 6 (lower is better) Translates to: NGIHGNSTRRVV*SFRGDSWSSHT Trigger: GGTGTGTGAAGACCATGAATCGCCGCGGAAAGAGCACACAACCCTGCGAGTACTATTTCCGTGTATTCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063324.14 ENSMUST00000182048.2 ENSMUST00000182111.8 ENSMUST00000182173.2 |
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