RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COX6A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030785

Ensembl transcript IDs: ENSMUST00000033049.9

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACCCAGATACCAACTGCCCAAGAGCCTGCCCAGCCCCTTCCACCATaGTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTA +
Preference number: 1 (lower is better)
Translates to: TQIPTAQEPAQPLPP*CSQRARGHKTSTPL
Trigger: TAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGGTATCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR TCA 90 bp GCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTaGGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCG +
Preference number: 1 (lower is better)
Translates to: AVPKEPEDTKLPHLY*AWNCPLEPQGLSEP
Trigger: CGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CCA 90 bp AGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCACTaGAACCTCAGGGGCTCTCAGAGCCGGTGTGCAGAAGGCCAATTT +
Preference number: 1 (lower is better)
Translates to: RTQNFHTFIELGTVH*NLRGSQSRCAEGQF
Trigger: AAATTGGCCTTCTGCACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CAA 90 bp TCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTaGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGGTGTG +
Preference number: 2 (lower is better)
Translates to: SQRARGHKTSTPLLS*ELSTGTSGALRAGV
Trigger: CACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CAA 90 bp TGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATaGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCC +
Preference number: 2 (lower is better)
Translates to: CCSQRARGHKTSTPL*SLELSTGTSGALRA
Trigger: GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR-3UTR GCA 90 bp ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGGCCAATTTGAAGATTaGTGGCAGAGCGTGTCTGCT +
Preference number: 2 (lower is better)
Translates to: TPLLSLELSTGTSGALRAGQFED*WQSVSA
Trigger: AGCAGACACGCTCTGCCAGCAATCTTCAAATTGGCC...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR-3UTR TCA 90 bp CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGATGCAGAAGGCCAATTTaGAGATTGCTGGCAGAGCGT +
Preference number: 2 (lower is better)
Translates to: LFPKSQRTQNFHTFIELGCRRPI*RLLAER
Trigger: ACGCTCTGCCAGCAATCTTCAAATTGGCCTTCTGCA...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR GCA 72 bp CCAACTGCCCAAGAGCCTGCCCAGCCCCTTCCACCATaGTGTTCCCAAAGAGCCAGAGGACACAAAACTTCC +
Preference number: 3 (lower is better)
Translates to: PTAQEPAQPLPP*CSQRARGHKTS
Trigger: GGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR GCA 72 bp AATAACTGGAACCCAGATACCAACTGCCCAAGAGCCTaGCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGC +
Preference number: 3 (lower is better)
Translates to: NNWNPDTNCPRA*PAPSTMLFPKS
Trigger: GCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGGTATCTGGGTTCCAGTTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR-3UTR CAA 90 bp CCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCAGTGCAGAAGGCCAATTaGAAGATTGCTGGCAGAGCG +
Preference number: 3 (lower is better)
Translates to: PSPFHHAVPKEPEDTKLPVQKAN*KIAGRA
Trigger: CGCTCTGCCAGCAATCTTCAAATTGGCCTTCTGCAC...TGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CCA 72 bp AACTTCCACACCTTTATTGAGCTTGGAACTGTCCACTaGAACCTCAGGGGCTCTCAGAGCCGGTGTGCAGAA +
Preference number: 3 (lower is better)
Translates to: NFHTFIELGTVH*NLRGSQSRCAE
Trigger: TTCTGCACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR TCA 72 bp AAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTaGGCTTGGAACTGTCCACTGGAACCTCAGGGGCTC +
Preference number: 3 (lower is better)
Translates to: KEPEDTKLPHLY*AWNCPLEPQGL
Trigger: GAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR TCA 90 bp CCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACGGATGCGGAGGTGGTaGTACGGGATGAACTCTGGG +
Preference number: 4 (lower is better)
Translates to: PSPFHHAVPKEPEDTKLPRMRRW*YGMNSG
Trigger: CCCAGAGTTCATCCCGTATCACCACCTCCGCATCCG...TGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR GCA 90 bp CCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACTGGCTGCGCTGGCCATaGTCCGGCTCAGGACCTTTA +
Preference number: 4 (lower is better)
Translates to: PAPSTMLFPKSQRTQNFHWLRWP*SGSGPL
Trigger: TAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCA...GTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR CCA 90 bp ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGCTCCTGCCCCTCCATaGTCTCCTTTGGCTGCGCTG +
Preference number: 4 (lower is better)
Translates to: TPLLSLELSTGTSGALRAAPAPP*SPLAAL
Trigger: CAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGC...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR GCA 90 bp CCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACCCAGGTGTTGGCTCCTaGCCCTCCATGGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: PAPSTMLFPKSQRTQNFHPGVGS*PSMVSF
Trigger: AAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGG...GTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR GCA 90 bp ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCAGGGCTTGGTTCGGATaGGGAGGTGGTGATACGGGA +
Preference number: 4 (lower is better)
Translates to: TPLLSLELSTGTSGALRARAWFG*GGGDTG
Trigger: TCCCGTATCACCACCTCCGCATCCGAACCAAGCCCT...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR GCA 90 bp CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCATGGTCTCCTTTGGCTaGGCTGGCCATGCTCCGGCT +
Preference number: 4 (lower is better)
Translates to: QRARGHKTSTPLLSLELSMVSFG*AGHAPA
Trigger: AGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCAT...GGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CAA 72 bp GCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTaGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGA +
Preference number: 4 (lower is better)
Translates to: ARGHKTSTPLLS*ELSTGTSGALR
Trigger: TCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
3UTR CAA 72 bp CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATaGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: QRARGHKTSTPL*SLELSTGTSGA
Trigger: AGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR CCA 90 bp CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCTTGACGTGGGGATTGTaGAAAAGCGTGTGGTTGCCG +
Preference number: 4 (lower is better)
Translates to: QRARGHKTSTPLLSLELSLTWGL*KSVWLP
Trigger: CGGCAACCACACGCTTTTCCACAATCCCCACGTCAA...GGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CCA 90 bp CTACGCCGGGAAGAGCCAGCACAAAGGTCAGGAGGCGCCAGGTGTTaGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCGCTGGCCATGC +
Preference number: 5 (lower is better)
Translates to: LRREEPAQRSGGARC*LLPLHGLLWLRWPC
Trigger: GCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCCCGGCGTAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR CAA 90 bp CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGACCTCCATGGTCTCCTTaGGCTGCGCTGGCCATGCTC +
Preference number: 5 (lower is better)
Translates to: LFPKSQRTQNFHTFIELGPPWSP*AALAML
Trigger: GAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGG...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS-3UTR CAA 90 bp CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGACCGGTGGGCAAAGGATaGACGTGGGGATTGTGGAAA +
Preference number: 5 (lower is better)
Translates to: LFPKSQRTQNFHTFIELGPVGKG*TWGLWK
Trigger: TTTCCACAATCCCCACGTCAATCCTTTGCCCACCGG...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CCA 72 bp GTCAGGAGGCGCCAGGTGTTGGCTCCTGCCCCTCCATaGTCTCCTTTGGCTGCGCTGGCCATGCTCCGGCTC +
Preference number: 6 (lower is better)
Translates to: VRRRQVLAPAPP*SPLAALAMLRL
Trigger: GAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CAA 72 bp CGCCAGGTGTTGGCTCCTGCCCCTCCATGGTCTCCTTaGGCTGCGCTGGCCATGCTCCGGCTCAGGACCTTT +
Preference number: 6 (lower is better)
Translates to: RQVLAPAPPWSP*AALAMLRLRTF
Trigger: AAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS TCA 72 bp AGGGCTTGGTTCGGATGCGGAGGTGGTGATACGGGATaGACTCTGGGCGCTCGTGGTGGCCAGCGTGCATCC +
Preference number: 6 (lower is better)
Translates to: RAWFGCGGGDTG*TLGARGGQRAS
Trigger: GGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACCTCCGCATCCGAACCAAGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS GCA 72 bp CAGCACAAAGGTCAGGAGGCGCCAGGTGTTGGCTCCTaGCCCTCCATGGTCTCCTTTGGCTGCGCTGGCCAT +
Preference number: 6 (lower is better)
Translates to: QHKGQEAPGVGS*PSMVSFGCAGH
Trigger: ATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CCA 72 bp TGGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCGCTaGCCATGCTCCGGCTCAGGACCTTTAGAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: WLLPLHGLLWLR*PCSGSGPLEAE
Trigger: CTCTGCCTCTAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CAA 72 bp GGAAGAGCCAGCACAAAGGTCAGGAGGCGCCAGGTGTaGGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCG +
Preference number: 6 (lower is better)
Translates to: GRASTKVRRRQV*APAPPWSPLAA
Trigger: CGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9
CDS CCA 72 bp GGTTCGGATGCGGAGGTGGTGATACGGGATGAACTCTaGGCGCTCGTGGTGGCCAGCGTGCATCCAGCAGTT +
Preference number: 6 (lower is better)
Translates to: GSDAEVVIRDEL*ALVVASVHPAV
Trigger: AACTGCTGGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACCTCCGCATCCGAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033049.9