Pregenerated sensors for COX6A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030785Ensembl transcript IDs: ENSMUST00000033049.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCCAGATACCAACTGCCCAAGAGCCTGCCCAGCCCCTTCCACCATaGTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTA | + |
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Preference number: 1 (lower is better) Translates to: TQIPTAQEPAQPLPP*CSQRARGHKTSTPL Trigger: TAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGGTATCTGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR TCA 90 bp | GCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTaGGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCG | + |
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Preference number: 1 (lower is better) Translates to: AVPKEPEDTKLPHLY*AWNCPLEPQGLSEP Trigger: CGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CCA 90 bp | AGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCACTaGAACCTCAGGGGCTCTCAGAGCCGGTGTGCAGAAGGCCAATTT | + |
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Preference number: 1 (lower is better) Translates to: RTQNFHTFIELGTVH*NLRGSQSRCAEGQF Trigger: AAATTGGCCTTCTGCACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CAA 90 bp | TCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTaGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: SQRARGHKTSTPLLS*ELSTGTSGALRAGV Trigger: CACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CAA 90 bp | TGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATaGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: CCSQRARGHKTSTPL*SLELSTGTSGALRA Trigger: GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR-3UTR GCA 90 bp | ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGGCCAATTTGAAGATTaGTGGCAGAGCGTGTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: TPLLSLELSTGTSGALRAGQFED*WQSVSA Trigger: AGCAGACACGCTCTGCCAGCAATCTTCAAATTGGCC...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGATGCAGAAGGCCAATTTaGAGATTGCTGGCAGAGCGT | + |
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Preference number: 2 (lower is better) Translates to: LFPKSQRTQNFHTFIELGCRRPI*RLLAER Trigger: ACGCTCTGCCAGCAATCTTCAAATTGGCCTTCTGCA...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR GCA 72 bp | CCAACTGCCCAAGAGCCTGCCCAGCCCCTTCCACCATaGTGTTCCCAAAGAGCCAGAGGACACAAAACTTCC | + |
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Preference number: 3 (lower is better) Translates to: PTAQEPAQPLPP*CSQRARGHKTS Trigger: GGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR GCA 72 bp | AATAACTGGAACCCAGATACCAACTGCCCAAGAGCCTaGCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NNWNPDTNCPRA*PAPSTMLFPKS Trigger: GCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGGCAGGCTCTTGGGCAGTTGGTATCTGGGTTCCAGTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCAGTGCAGAAGGCCAATTaGAAGATTGCTGGCAGAGCG | + |
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Preference number: 3 (lower is better) Translates to: PSPFHHAVPKEPEDTKLPVQKAN*KIAGRA Trigger: CGCTCTGCCAGCAATCTTCAAATTGGCCTTCTGCAC...TGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CCA 72 bp | AACTTCCACACCTTTATTGAGCTTGGAACTGTCCACTaGAACCTCAGGGGCTCTCAGAGCCGGTGTGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: NFHTFIELGTVH*NLRGSQSRCAE Trigger: TTCTGCACACCGGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR TCA 72 bp | AAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTaGGCTTGGAACTGTCCACTGGAACCTCAGGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: KEPEDTKLPHLY*AWNCPLEPQGL Trigger: GAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR TCA 90 bp | CCCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACGGATGCGGAGGTGGTaGTACGGGATGAACTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: PSPFHHAVPKEPEDTKLPRMRRW*YGMNSG Trigger: CCCAGAGTTCATCCCGTATCACCACCTCCGCATCCG...TGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR GCA 90 bp | CCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACTGGCTGCGCTGGCCATaGTCCGGCTCAGGACCTTTA | + |
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Preference number: 4 (lower is better) Translates to: PAPSTMLFPKSQRTQNFHWLRWP*SGSGPL Trigger: TAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCA...GTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR CCA 90 bp | ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCGCTCCTGCCCCTCCATaGTCTCCTTTGGCTGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: TPLLSLELSTGTSGALRAAPAPP*SPLAAL Trigger: CAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGC...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR GCA 90 bp | CCAGCCCCTTCCACCATGCTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACCCAGGTGTTGGCTCCTaGCCCTCCATGGTCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: PAPSTMLFPKSQRTQNFHPGVGS*PSMVSF Trigger: AAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGG...GTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAGCATGGTGGAAGGGGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR GCA 90 bp | ACACCTTTATTGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGAGCCAGGGCTTGGTTCGGATaGGGAGGTGGTGATACGGGA | + |
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Preference number: 4 (lower is better) Translates to: TPLLSLELSTGTSGALRARAWFG*GGGDTG Trigger: TCCCGTATCACCACCTCCGCATCCGAACCAAGCCCT...GGCTCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR GCA 90 bp | CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCATGGTCTCCTTTGGCTaGGCTGGCCATGCTCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: QRARGHKTSTPLLSLELSMVSFG*AGHAPA Trigger: AGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCAT...GGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CAA 72 bp | GCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTaGGAACTGTCCACTGGAACCTCAGGGGCTCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: ARGHKTSTPLLS*ELSTGTSGALR Trigger: TCTGAGAGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| 3UTR CAA 72 bp | CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATaGAGCTTGGAACTGTCCACTGGAACCTCAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: QRARGHKTSTPL*SLELSTGTSGA Trigger: AGCCCCTGAGGTTCCAGTGGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR CCA 90 bp | CAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGAACTGTCCTTGACGTGGGGATTGTaGAAAAGCGTGTGGTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: QRARGHKTSTPLLSLELSLTWGL*KSVWLP Trigger: CGGCAACCACACGCTTTTCCACAATCCCCACGTCAA...GGACAGTTCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CCA 90 bp | CTACGCCGGGAAGAGCCAGCACAAAGGTCAGGAGGCGCCAGGTGTTaGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCGCTGGCCATGC | + |
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Preference number: 5 (lower is better) Translates to: LRREEPAQRSGGARC*LLPLHGLLWLRWPC Trigger: GCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCCCGGCGTAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR CAA 90 bp | CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGACCTCCATGGTCTCCTTaGGCTGCGCTGGCCATGCTC | + |
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Preference number: 5 (lower is better) Translates to: LFPKSQRTQNFHTFIELGPPWSP*AALAML Trigger: GAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGG...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS-3UTR CAA 90 bp | CTGTTCCCAAAGAGCCAGAGGACACAAAACTTCCACACCTTTATTGAGCTTGGACCGGTGGGCAAAGGATaGACGTGGGGATTGTGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LFPKSQRTQNFHTFIELGPVGKG*TWGLWK Trigger: TTTCCACAATCCCCACGTCAATCCTTTGCCCACCGG...TCCAAGCTCAATAAAGGTGTGGAAGTTTTGTGTCCTCTGGCTCTTTGGGAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CCA 72 bp | GTCAGGAGGCGCCAGGTGTTGGCTCCTGCCCCTCCATaGTCTCCTTTGGCTGCGCTGGCCATGCTCCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: VRRRQVLAPAPP*SPLAALAMLRL Trigger: GAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CAA 72 bp | CGCCAGGTGTTGGCTCCTGCCCCTCCATGGTCTCCTTaGGCTGCGCTGGCCATGCTCCGGCTCAGGACCTTT | + |
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Preference number: 6 (lower is better) Translates to: RQVLAPAPPWSP*AALAMLRLRTF Trigger: AAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS TCA 72 bp | AGGGCTTGGTTCGGATGCGGAGGTGGTGATACGGGATaGACTCTGGGCGCTCGTGGTGGCCAGCGTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: RAWFGCGGGDTG*TLGARGGQRAS Trigger: GGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACCTCCGCATCCGAACCAAGCCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS GCA 72 bp | CAGCACAAAGGTCAGGAGGCGCCAGGTGTTGGCTCCTaGCCCTCCATGGTCTCCTTTGGCTGCGCTGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: QHKGQEAPGVGS*PSMVSFGCAGH Trigger: ATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CCA 72 bp | TGGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCGCTaGCCATGCTCCGGCTCAGGACCTTTAGAGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: WLLPLHGLLWLR*PCSGSGPLEAE Trigger: CTCTGCCTCTAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CAA 72 bp | GGAAGAGCCAGCACAAAGGTCAGGAGGCGCCAGGTGTaGGCTCCTGCCCCTCCATGGTCTCCTTTGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: GRASTKVRRRQV*APAPPWSPLAA Trigger: CGCAGCCAAAGGAGACCATGGAGGGGCAGGAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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| CDS CCA 72 bp | GGTTCGGATGCGGAGGTGGTGATACGGGATGAACTCTaGGCGCTCGTGGTGGCCAGCGTGCATCCAGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: GSDAEVVIRDEL*ALVVASVHPAV Trigger: AACTGCTGGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACCTCCGCATCCGAACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033049.9 |
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