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Pregenerated sensors for COX6A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041697

Ensembl transcript IDs: ENSMUST00000040154.9

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GACACGAGCTTAGCATCCAAAGGGTTTTCGTGGTCCACACAGAGTAAGGGTCCACTGTGGTCCCTTTGTTaGCTGGGGGAGGCCAGGTTC +
Preference number: 2 (lower is better)
Translates to: DTSLASKGFSWSTQSKGPLWSLC*LGEARF
Trigger: GAACCTGGCCTCCCCCAGGCAACAAAGGGACCACAG...TGGACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGATGCTAAGCTCGTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040154.9
3UTR-3UTR GCA 90 bp CAAGCAGAAGGGATGGAAGATCAGAGTAATGGTCGCCATCTGAGGAAAGGAGACAGGGTCCAAAACCAGTaGTGTGGTCCCTTTGTTGCC +
Preference number: 2 (lower is better)
Translates to: QAEGMEDQSNGRHLRKGDRVQNQ*CGPFVA
Trigger: GGCAACAAAGGGACCACAGCACTGGTTTTGGACCCT...GTCTCCTTTCCTCAGATGGCGACCATTACTCTGATCTTCCATCCCTTCTGCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040154.9
3UTR-3UTR CCA 90 bp CAAGCAGAAGGGATGGAAGATCAGAGTAATGGTCGCCATCTGAGGAAAGGAGACTCCAAAGGGTTTTCGTaGTCCACACAGAGTAAGGGT +
Preference number: 2 (lower is better)
Translates to: QAEGMEDQSNGRHLRKGDSKGFS*STQSKG
Trigger: ACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGA...GTCTCCTTTCCTCAGATGGCGACCATTACTCTGATCTTCCATCCCTTCTGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040154.9
3UTR-3UTR CAA 90 bp GACACGAGCTTAGCATCCAAAGGGTTTTCGTGGTCCACACAGAGTAAGGGTCCAAGTGCTGTGGTCCCTTaGTTGCCTGGGGGAGGCCAG +
Preference number: 3 (lower is better)
Translates to: DTSLASKGFSWSTQSKGPSAVVP*LPGGGQ
Trigger: CTGGCCTCCCCCAGGCAACAAAGGGACCACAGCACT...TGGACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGATGCTAAGCTCGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040154.9
3UTR GCA 72 bp TTTCGTGGTCCACACAGAGTAAGGGTCCAAAACCAGTaGTGTGGTCCCTTTGTTGCCTGGGGGAGGCCAGGT +
Preference number: 3 (lower is better)
Translates to: FRGPHRVRVQNQ*CGPFVAWGRPG
Trigger: ACCTGGCCTCCCCCAGGCAACAAAGGGACCACAGCACTGGTTTTGGACCCTTACTCTGTGTGGACCACGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040154.9