Pregenerated sensors for COX6A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041697Ensembl transcript IDs: ENSMUST00000040154.9
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GACACGAGCTTAGCATCCAAAGGGTTTTCGTGGTCCACACAGAGTAAGGGTCCACTGTGGTCCCTTTGTTaGCTGGGGGAGGCCAGGTTC | + |
|
Preference number: 2 (lower is better) Translates to: DTSLASKGFSWSTQSKGPLWSLC*LGEARF Trigger: GAACCTGGCCTCCCCCAGGCAACAAAGGGACCACAG...TGGACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGATGCTAAGCTCGTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040154.9 |
||
| 3UTR-3UTR GCA 90 bp | CAAGCAGAAGGGATGGAAGATCAGAGTAATGGTCGCCATCTGAGGAAAGGAGACAGGGTCCAAAACCAGTaGTGTGGTCCCTTTGTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: QAEGMEDQSNGRHLRKGDRVQNQ*CGPFVA Trigger: GGCAACAAAGGGACCACAGCACTGGTTTTGGACCCT...GTCTCCTTTCCTCAGATGGCGACCATTACTCTGATCTTCCATCCCTTCTGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040154.9 |
||
| 3UTR-3UTR CCA 90 bp | CAAGCAGAAGGGATGGAAGATCAGAGTAATGGTCGCCATCTGAGGAAAGGAGACTCCAAAGGGTTTTCGTaGTCCACACAGAGTAAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: QAEGMEDQSNGRHLRKGDSKGFS*STQSKG Trigger: ACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGA...GTCTCCTTTCCTCAGATGGCGACCATTACTCTGATCTTCCATCCCTTCTGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040154.9 |
||
| 3UTR-3UTR CAA 90 bp | GACACGAGCTTAGCATCCAAAGGGTTTTCGTGGTCCACACAGAGTAAGGGTCCAAGTGCTGTGGTCCCTTaGTTGCCTGGGGGAGGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: DTSLASKGFSWSTQSKGPSAVVP*LPGGGQ Trigger: CTGGCCTCCCCCAGGCAACAAAGGGACCACAGCACT...TGGACCCTTACTCTGTGTGGACCACGAAAACCCTTTGGATGCTAAGCTCGTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040154.9 |
||
| 3UTR GCA 72 bp | TTTCGTGGTCCACACAGAGTAAGGGTCCAAAACCAGTaGTGTGGTCCCTTTGTTGCCTGGGGGAGGCCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: FRGPHRVRVQNQ*CGPFVAWGRPG Trigger: ACCTGGCCTCCCCCAGGCAACAAAGGGACCACAGCACTGGTTTTGGACCCTTACTCTGTGTGGACCACGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040154.9 |
||