Pregenerated sensors for COX5B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061518

Ensembl transcript IDs: ENSMUST00000193210.6

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CCCAGCACTCAGAATCTGAAGTCAAGGCAAGCCTGGTCTACAGAGTaGGTTCCAGGCCAGCCAAGGCTACACAGAGAAAAGAGAAACCCT	+
Preference number: 1 (lower is better) Translates to: PSTQNLKSRQAWSTE*VPGQPRLHREKRNP Trigger: AGGGTTTCTCTTTTCTCTGTGTAGCCTTGGCTGGCCTGGAACTCACTCTGTAGACCAGGCTTGCCTTGACTTCAGATTCTGAGTGCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
3UTR-3UTR CCA 90 bp	GATACTTTTAATCCCAGCACTCAGAATCTGAAGTCAAGGCAAGCCTGGTCTACAGAGGAGCCAGTGCAATaGCTAATCTTTATTAGAGAG	+
Preference number: 2 (lower is better) Translates to: DTFNPSTQNLKSRQAWSTEEPVQ*LIFIRE Trigger: CTCTCTAATAAAGATTAGCCATTGCACTGGCTCCTC...TGTAGACCAGGCTTGCCTTGACTTCAGATTCTGAGTGCTGGGATTAAAAGTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
3UTR TCA 72 bp	CAGAATCTGAAGTCAAGGCAAGCCTGGTCTACAGAGTaGGTTCCAGGCCAGCCAAGGCTACACAGAGAAAAG	+
Preference number: 3 (lower is better) Translates to: QNLKSRQAWSTE*VPGQPRLHREK Trigger: CTTTTCTCTGTGTAGCCTTGGCTGGCCTGGAACTCACTCTGTAGACCAGGCTTGCCTTGACTTCAGATTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
3UTR TCA 72 bp	TGGTGGCAGATACTTTTAATCCCAGCACTCAGAATCTaGAGTCAAGGCAAGCCTGGTCTACAGAGTGAGTTC	+
Preference number: 3 (lower is better) Translates to: WWQILLIPALRI*SQGKPGLQSEF Trigger: GAACTCACTCTGTAGACCAGGCTTGCCTTGACTTCAGATTCTGAGTGCTGGGATTAAAAGTATCTGCCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
3UTR CCA 72 bp	CATAAGACTAGCCAGCTATGGGAGGAGCCAGTGCAATaGCTAATCTTTATTAGAGAGAAGTTTTTCTTTACA	+
Preference number: 3 (lower is better) Translates to: HKTSQLWEEPVQ*LIFIREKFFFT Trigger: TGTAAAGAAAAACTTCTCTCTAATAAAGATTAGCCATTGCACTGGCTCCTCCCATAGCTGGCTAGTCTTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
CDS-3UTR GCA 90 bp	AAAGACTATAGACATAAGACTAGCCAGCTATGGGAGGAGCCAGTGCAATGGCTATCCAGCCCAGTAGCCTaGTCCTCATCAGTGGGGACA	+
Preference number: 4 (lower is better) Translates to: KDYRHKTSQLWEEPVQWLSSPVA*SSSVGT Trigger: TGTCCCCACTGATGAGGAGCAGGCTACTGGGCTGGA...TAGCCATTGCACTGGCTCCTCCCATAGCTGGCTAGTCTTATGTCTATAGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6
CDS-3UTR GCA 90 bp	GTGAGTTCCAGGCCAGCCAAGGCTACACAGAGAAAAGAGAAACCCTGTCTCGAACAGTCCCTTCTGTGCTaGTATCATGATCTCCCTCTC	+
Preference number: 4 (lower is better) Translates to: VSSRPAKATQRKEKPCLEQSLLC*YHDLPL Trigger: GAGAGGGAGATCATGATAGCAGCACAGAAGGGACTG...TTCGAGACAGGGTTTCTCTTTTCTCTGTGTAGCCTTGGCTGGCCTGGAACTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193210.6

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