Pregenerated sensors for COX5A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000088Ensembl transcript IDs: ENSMUST00000000090.8
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTAGGAAGCCCAGCTCCTCTGGAGTaGAGATTCCCAATTCATTTA | + |
|
Preference number: 4 (lower is better) Translates to: FPGNCFNQVAIAVKSLGSPAPLE*RFPIHL Trigger: TAAATGAATTGGGAATCTCCACTCCAGAGGAGCTGG...GCTTCCTAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000090.8 |
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| CDS-3UTR GCA 90 bp | AAAACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTATCTACATGCTCGCAATaGAGCATCAATGATTTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KTFPGNCFNQVAIAVKSLSTCSQ*SINDFG Trigger: CCCAAAATCATTGATGCTGCATTGCGAGCATGTAGA...TAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000090.8 |
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| CDS-3UTR CCA 90 bp | AAAACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTACCAGGCATCAATGTCTaGCTTGTTGAAATATGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: KTFPGNCFNQVAIAVKSLPGINV*LVEICH Trigger: GTGACATATTTCAACAAGCCAGACATTGATGCCTGG...TAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000090.8 |
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| CDS-3UTR CAA 90 bp | ACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTAGGAGCATCAATGTCTGGCTaGTTGAAATATGTCACCCAG | + |
|
Preference number: 5 (lower is better) Translates to: TFPGNCFNQVAIAVKSLGASMSG*LKYVTQ Trigger: CTGGGTGACATATTTCAACAAGCCAGACATTGATGC...TCCTAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000090.8 |
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