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Pregenerated sensors for COX5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000088

Ensembl transcript IDs: ENSMUST00000000090.8

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTAGGAAGCCCAGCTCCTCTGGAGTaGAGATTCCCAATTCATTTA +
Preference number: 4 (lower is better)
Translates to: FPGNCFNQVAIAVKSLGSPAPLE*RFPIHL
Trigger: TAAATGAATTGGGAATCTCCACTCCAGAGGAGCTGG...GCTTCCTAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000090.8
CDS-3UTR GCA 90 bp AAAACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTATCTACATGCTCGCAATaGAGCATCAATGATTTTGGG +
Preference number: 4 (lower is better)
Translates to: KTFPGNCFNQVAIAVKSLSTCSQ*SINDFG
Trigger: CCCAAAATCATTGATGCTGCATTGCGAGCATGTAGA...TAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000090.8
CDS-3UTR CCA 90 bp AAAACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTACCAGGCATCAATGTCTaGCTTGTTGAAATATGTCAC +
Preference number: 4 (lower is better)
Translates to: KTFPGNCFNQVAIAVKSLPGINV*LVEICH
Trigger: GTGACATATTTCAACAAGCCAGACATTGATGCCTGG...TAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000090.8
CDS-3UTR CAA 90 bp ACATTTCCAGGCAACTGTTTCAATCAAGTAGCAATAGCAGTTAAGTCCTTAGGAGCATCAATGTCTGGCTaGTTGAAATATGTCACCCAG +
Preference number: 5 (lower is better)
Translates to: TFPGNCFNQVAIAVKSLGASMSG*LKYVTQ
Trigger: CTGGGTGACATATTTCAACAAGCCAGACATTGATGC...TCCTAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000090.8