Pregenerated sensors for COX4I2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009876Ensembl transcript IDs: ENSMUST00000010020.12, ENSMUST00000109821.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGGATTGTCTCCTGGGCTaGAGAAGCAGTTTGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: AEQSRLLLLEKGVETGLRDCLLG*RSSLQG Trigger: CCCCTGCAAACTGCTTCTGCAGCCCAGGAGACAATC...CCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| 3UTR-3UTR GCA 90 bp | CAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGATTGTCTCCTGGGCTaGAGAAGCAGTTTGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: QNKAGCFYWRREWRQDSGDCLLG*RSSLQG Trigger: CCCCTGCAAACTGCTTCTGCAGCCCAGGAGACAATC...TCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGGATGATTGTCTCCTaGGCTGCAGAAGCAGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: QNKAGCFYWRREWRQDSGGMIVS*AAEAVC Trigger: GCAAACTGCTTCTGCAGCCCAGGAGACAATCATCCC...TCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| 3UTR-3UTR CCA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGGGGATGATTGTCTCCTaGGCTGCAGAAGCAGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: FASRTKQAAFIGEGSGDRGMIVS*AAEAVC Trigger: GCAAACTGCTTCTGCAGCCCAGGAGACAATCATCCC...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGGGCTGCAGAAGCAGTTaGCAGGGGCTGGCGGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: TKQAAFIGEGSGDRTQEEGCRSS*QGLAAD Trigger: GTCTGCCGCCAGCCCCTGCAAACTGCTTCTGCAGCC...CTCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGGGCTGCAGAAGCAGTTaGCAGGGGCTGGCGGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: AEQSRLLLLEKGVETGLRGCRSS*QGLAAD Trigger: GTCTGCCGCCAGCCCCTGCAAACTGCTTCTGCAGCC...CCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR TCA 90 bp | AACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGACCCGCTGCTCCTCGCTaGGCTCTGTGCAGAAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: NKAGCFYWRREWRQDSGGPAAPR*ALCRRA Trigger: AGCCCTTCTGCACAGAGCTCAGCGAGGAGCAGCGGG...TCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | GAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGTCCTTCAGGGCCCGCTaGTCCTCGCTGAGCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: EQSRLLLLEKGVETGLRRSFRAR*SSLSSV Trigger: CACAGAGCTCAGCGAGGAGCAGCGGGCCCTGAAGGA...CCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | GCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGGCCAGCAGCATCTCCTaGGCTGTGTGTCCCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: AEQSRLLLLEKGVETGLRASSIS*AVCPCP Trigger: GGGACAGGGACACACAGCCCAGGAGATGCTGCTGGC...CCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGGCCAGCAGCATCTCCTaGGCTGTGTGTCCCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: EQSRLLLLEKGVETGLRRASSIS*AVCPCP Trigger: GGGACAGGGACACACAGCCCAGGAGATGCTGCTGGC...CCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCACCCGCTGCTCCTCGCTaGGCTCTGTGCAGAAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KQNKAGCFYWRREWRQDSPAAPR*ALCRRA Trigger: AGCCCTTCTGCACAGAGCTCAGCGAGGAGCAGCGGG...TGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGGGGGTCATCCTCCTCTaGCTGCCAGCAGCATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: EQSRLLLLEKGVETGLRRGVILL*LPAASP Trigger: AGGAGATGCTGCTGGCAGCCAGAGGAGGATGACCCC...CCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTC 56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | ACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGGCCACCTTCTCTGCTTaGCTCAGCTGGGTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TKQAAFIGEGSGDRTQEEATFSA*LSWVQL Trigger: CAGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGC...CTCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | GCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGGCCACCTTCTCTGCTTaGCTCAGCTGGGTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: AEQSRLLLLEKGVETGLRATFSA*LSWVQL Trigger: CAGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGC...CCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | CAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGATCATCCTCCTCTGGCTaGCAGCAGCATCTCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: QNKAGCFYWRREWRQDSGSSSSG*QQHLLG Trigger: GCCCAGGAGATGCTGCTGGCAGCCAGAGGAGGATGA...TCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGTCCTTCAGGGCCCGCTaGTCCTCGCTGAGCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: FASRTKQAAFIGEGSGDRSFRAR*SSLSSV Trigger: CACAGAGCTCAGCGAGGAGCAGCGGGCCCTGAAGGA...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | GCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGCAAGGCCACCTTCTCTaGTTGGCTCAGCTGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AEQSRLLLLEKGVETGLRQGHLL*LAQLGP Trigger: TGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCCTTG...CCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | ACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGGGCCCTGTATGGGGTTaGTCTTCATGTCCAGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: TKQAAFIGEGSGDRTQEEGPVWG*SSCPGG Trigger: GCCTCCTGGACATGAAGAGCAACCCCATACAGGGCC...CTCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGTCATCCTCCTCTGGCTaGCAGCAGCATCTCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: FASRTKQAAFIGEGSGDRSSSSG*QQHLLG Trigger: GCCCAGGAGATGCTGCTGGCAGCCAGAGGAGGATGA...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | AACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGGCCCTGTATGGGGTTaGTCTTCATGTCCAGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: NKAGCFYWRREWRQDSGGGPVWG*SSCPGG Trigger: GCCTCCTGGACATGAAGAGCAACCCCATACAGGGCC...TCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGGGGGTCATCCTCCTCTaGCTGCCAGCAGCATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: FASRTKQAAFIGEGSGDRGVILL*LPAASP Trigger: AGGAGATGCTGCTGGCAGCCAGAGGAGGATGACCCC...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCATCTGCTTGGCTCAGCTaGGTCCAGCTGCCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: KQNKAGCFYWRREWRQDSSAWLS*VQLPFS Trigger: AGAGAAGGGCAGCTGGACCCAGCTGAGCCAAGCAGA...TGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGATGTCCAGGAGGCGCTaGAGCTGTTGGGCTTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: FASRTKQAAFIGEGSGDRMSRRR*SCWAFR Trigger: ACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACAT...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | AACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGACAGCCAGGCCCTGTATaGGGTTGCTCTTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: NKAGCFYWRREWRQDSGGQPGPV*GCSSCP Trigger: TGGACATGAAGAGCAACCCCATACAGGGCCTGGCTG...TCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | ACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGTCTGCGAAGGTTTCATaGAACTGGAGCCGGTACAAG | + |
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Preference number: 4 (lower is better) Translates to: TKQAAFIGEGSGDRTQEESAKVS*NWSRYK Trigger: CTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGA...CTCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGTCTGCGAAGGTTTCATaGAACTGGAGCCGGTACAAG | + |
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Preference number: 4 (lower is better) Translates to: EQSRLLLLEKGVETGLRRSAKVS*NWSRYK Trigger: CTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGA...CCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCACAGCCAGGCCCTGTATaGGGTTGCTCTTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KQNKAGCFYWRREWRQDSQPGPV*GCSSCP Trigger: TGGACATGAAGAGCAACCCCATACAGGGCCTGGCTG...TGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | GAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGGCGATGGTTCATCTCTaGGAAGGTTTCATGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: EQSRLLLLEKGVETGLRRAMVHL*EGFMEL Trigger: CAGTTCCATGAAACCTTCGCAGAGATGAACCATCGC...CCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR GCA 90 bp | CAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGCGATGGTTCATCTCTaGGAAGGTTTCATGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: QNKAGCFYWRREWRQDSGAMVHL*EGFMEL Trigger: CAGTTCCATGAAACCTTCGCAGAGATGAACCATCGC...TCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 90 bp | GCAGCCAGGCCCTGTATGGGGTTGCTCTTCATGTCCAGGAGGCGCTaGAGCTGTTGGGCTTTCCGTTCTTCCGTCAGGGTGACAACCTTC | + |
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Preference number: 5 (lower is better) Translates to: AARPCMGLLFMSRRR*SCWAFRSSVRVTTF Trigger: GAAGGTTGTCACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCCCATACAGGGCCTGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 90 bp | GTCAACGTAGGGGGTCATCCTCCTCTGGCTGCCAGCAGCATCTCCTaGGCTGTGTGTCCCTGTCCCTCTAGTTCTGAGTCCTGTCCTCAT | + |
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Preference number: 5 (lower is better) Translates to: VNVGGHPPLAASSIS*AVCPCPSSSESCPH Trigger: ATGAGGACAGGACTCAGAACTAGAGGGACAGGGACACACAGCCCAGGAGATGCTGCTGGCAGCCAGAGGAGGATGACCCCCTACGTTGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 90 bp | CCCTGTATGGGGTTGCTCTTCATGTCCAGGAGGCGCTGGAGCTGTTaGGCTTTCCGTTCTTCCGTCAGGGTGACAACCTTCTTAGGGAAC | + |
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Preference number: 5 (lower is better) Translates to: PCMGLLFMSRRRWSC*AFRSSVRVTTFLGN Trigger: GTTCCCTAAGAAGGTTGTCACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCCCATACAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CAA 90 bp | AACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGAGGAGGCCACCTTCTCTGCTaGGCTCAGCTGGGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: NKAGCFYWRREWRQDSGGGHLLC*AQLGPA Trigger: AGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCC...TCCTCCTGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS GCA 90 bp | GCAGCCCATCACTGTCTTCCATTCGTTGGAGCGATGGTTCATCTCTaGGAAGGTTTCATGGAACTGGAGCCGGTACAAGGCCACCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: AAHHCLPFVGAMVHL*EGFMELEPVQGHLL Trigger: GAGAAGGTGGCCTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTCCAACGAATGGAAGACAGTGATGGGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAGGCCACCTTCTCTGCTaGGCTCAGCTGGGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: KQNKAGCFYWRREWRQDSGHLLC*AQLGPA Trigger: AGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCC...TGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 90 bp | AAGAAGAAGACGCAGCCCATCACTGTCTTCCATTCGTTGGAGCGATaGTTCATCTCTGCGAAGGTTTCATGGAACTGGAGCCGGTACAAG | + |
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Preference number: 5 (lower is better) Translates to: KKKTQPITVFHSLER*FISAKVSWNWSRYK Trigger: CTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTCCAACGAATGGAAGACAGTGATGGGCTGCGTCTTCTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTCAACTGTCTTCCATTCGTaGGAGCGATGGTTCATCTCT | + |
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Preference number: 5 (lower is better) Translates to: KQNKAGCFYWRREWRQDSTVFHS*ERWFIS Trigger: AGAGATGAACCATCGCTCCAACGAATGGAAGACAGT...TGAGTCCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS-3UTR CAA 90 bp | TTTGCAAGCAGAACAAAGCAGGCTGCTTTTATTGGAGAAGGGAGTGGAGACAGGACTGTCTTCCATTCGTaGGAGCGATGGTTCATCTCT | + |
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Preference number: 5 (lower is better) Translates to: FASRTKQAAFIGEGSGDRTVFHS*ERWFIS Trigger: AGAGATGAACCATCGCTCCAACGAATGGAAGACAGT...CCTGTCTCCACTCCCTTCTCCAATAAAAGCAGCCTGCTTTGTTCTGCTTGCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 72 bp | TGGAACTGGAGCCGGTACAAGGCCACCTTCTCTGCTTaGCTCAGCTGGGTCCAGCTGCCCTTCTCTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: WNWSRYKATFSA*LSWVQLPFSFS Trigger: GGAGAAAGAGAAGGGCAGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCCTTGTACCGGCTCCAGTTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 72 bp | CCCTGTATGGGGTTGCTCTTCATGTCCAGGAGGCGCTaGAGCTGTTGGGCTTTCCGTTCTTCCGTCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PCMGLLFMSRRR*SCWAFRSSVRV Trigger: CACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCCCATACAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 72 bp | GGGTTGCTCTTCATGTCCAGGAGGCGCTGGAGCTGTTaGGCTTTCCGTTCTTCCGTCAGGGTGACAACCTTC | + |
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Preference number: 6 (lower is better) Translates to: GLLFMSRRRWSC*AFRSSVRVTTF Trigger: GAAGGTTGTCACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CAA 72 bp | ATGGAACTGGAGCCGGTACAAGGCCACCTTCTCTGCTaGGCTCAGCTGGGTCCAGCTGCCCTTCTCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: MELEPVQGHLLC*AQLGPAALLFL Trigger: GAGAAAGAGAAGGGCAGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCCTTGTACCGGCTCCAGTTCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CAA 72 bp | GGGGTTGCTCTTCATGTCCAGGAGGCGCTGGAGCTGTaGGGCTTTCCGTTCTTCCGTCAGGGTGACAACCTT | + |
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Preference number: 6 (lower is better) Translates to: GVALHVQEALEL*GFPFFRQGDNL Trigger: AAGGTTGTCACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CAA 90 bp | GCCCTGTATGGGGTTGCTCTTCATGTCCAGGAGGCGCTGGAGCTGTaGGGCTTTCCGTTCTTCCGTCAGGGTGACAACCTTCTTAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: ALYGVALHVQEALEL*GFPFFRQGDNLLRE Trigger: TTCCCTAAGAAGGTTGTCACCCTGACGGAAGAACGGAAAGCCCAACAGCTCCAGCGCCTCCTGGACATGAAGAGCAACCCCATACAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS GCA 72 bp | TTCATGGAACTGGAGCCGGTACAAGGCCACCTTCTCTaGTTGGCTCAGCTGGGTCCAGCTGCCCTTCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FMELEPVQGHLL*LAQLGPAALLF Trigger: AAAGAGAAGGGCAGCTGGACCCAGCTGAGCCAAGCAGAGAAGGTGGCCTTGTACCGGCTCCAGTTCCATGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 72 bp | GAGCGATGGTTCATCTCTGCGAAGGTTTCATGGAACTaGAGCCGGTACAAGGCCACCTTCTCTGCTTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: ERWFISAKVSWN*SRYKATFSAWL Trigger: GAGCCAAGCAGAGAAGGTGGCCTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS GCA 72 bp | CACTGTCTTCCATTCGTTGGAGCGATGGTTCATCTCTaGGAAGGTTTCATGGAACTGGAGCCGGTACAAGGC | + |
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Preference number: 6 (lower is better) Translates to: HCLPFVGAMVHL*EGFMELEPVQG Trigger: GCCTTGTACCGGCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTCCAACGAATGGAAGACAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CCA 72 bp | ACGCAGCCCATCACTGTCTTCCATTCGTTGGAGCGATaGTTCATCTCTGCGAAGGTTTCATGGAACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: TQPITVFHSLER*FISAKVSWNWS Trigger: GCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTCCAACGAATGGAAGACAGTGATGGGCTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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| CDS CAA 90 bp | AATCCAATGAAGAAGAAGACGCAGCCCATCACTGTCTTCCATTCGTaGGAGCGATGGTTCATCTCTGCGAAGGTTTCATGGAACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: NPMKKKTQPITVFHS*ERWFISAKVSWNWS Trigger: GCTCCAGTTCCATGAAACCTTCGCAGAGATGAACCATCGCTCCAACGAATGGAAGACAGTGATGGGCTGCGTCTTCTTCTTCATTGGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010020.12 ENSMUST00000109821.2 |
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