Pregenerated sensors for COX4I1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031818Ensembl transcript IDs: ENSMUST00000034276.13, ENSMUST00000181586.8, ENSMUST00000181847.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCATaGCGAGGGAGTGAGGGAGGCAGGGAGCCGGCAGGCAGCGGGCTC | + |
|
Preference number: 1 (lower is better) Translates to: WSFISMDHWIRQLPA*RGSEGGREPAGSGL Trigger: GAGCCCGCTGCCTGCCGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGCATGGCCACCCAGTCACGATCGAAAGTATGAGGGATGGGGCCATACACATAGAACTTTCTCATCCCTaGAAAGGCTGCTCCAGTCGG | + |
|
Preference number: 2 (lower is better) Translates to: LHGHPVTIESMRDGAIHIELSHP*KGCSSR Trigger: CCGACTGGAGCAGCCTTTCCAGGGATGAGAAAGTTC...TATGTGTATGGCCCCATCCCTCATACTTTCGATCGTGACTGGGTGGCCATGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181847.8 |
||
| 3UTR GCA 72 bp | ATTAGCATGGACCATTGGATACGGCAGCTTCCAGCATaGCGAGGGAGTGAGGGAGGCAGGGAGCCGGCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: ISMDHWIRQLPA*RGSEGGREPAG Trigger: GCCTGCCGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGGACAGCATCGTGACATaGGCCACATCAGGCAAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPDSIVT*ATSGKG Trigger: CCCCTTGCCTGATGTGGCCCATGTCACGATGCTGTC...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGTCCTTCAGCGCCTTCTaGCTGGCAGACAGCATCGTG | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPSFSAF*LADSIV Trigger: CACGATGCTGTCTGCCAGCCAGAAGGCGCTGAAGGA...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR GCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGAGCATTCGCTTGGTCTaGATGGCCACCCAGTCACGA | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPSIRLV*MATQSR Trigger: TCGTGACTGGGTGGCCATGCAGACCAAGCGAATGCT...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGCGGAGAAGCCCTGAATaGGGTTGGCCTTCATGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPRRSPE*GWPSCP Trigger: TGGACATGAAGGCCAACCCCATTCAGGGCTTCTCCG...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGGAACTTTCTCATCCCTaGAAAGGCTGCTCCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPELSHP*KGCSSR Trigger: CCGACTGGAGCAGCCTTTCCAGGGATGAGAAAGTTC...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGAGCCCTGAATGGGGTTaGCCTTCATGTCCAGCATTC | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPSPEWG*PSCPAF Trigger: GAATGCTGGACATGAAGGCCAACCCCATTCAGGGCT...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CATTGGATACGGCAGCTTCCAGCATGCCGAGGGAGTGAGGGAGGCAGGGAGCCGGCCGATCAGCGTAAGTaGGGAAAGCATAGTCTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: HWIRQLPACRGSEGGREPADQRK*GKHSLH Trigger: GTGAAGACTATGCTTTCCCCACTTACGCTGATCGGC...CGGCTCCCTGCCTCCCTCACTCCCTCGGCATGCTGGAAGCTGCCGTATCCAATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR GCA 90 bp | CACGTAAACTGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCACATCCCTGGAAAGGCTaGTCCAGTCGGCCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: HVNWSFISMDHWIRQLPAHPWKG*SSRPSP Trigger: AGGAGAAGGCCGACTGGAGCAGCCTTTCCAGGGATG...TGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCAGTTTACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CACGTAAACTGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCAGACAGCATCGTGACATaGGCCACATCAGGCAAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: HVNWSFISMDHWIRQLPADSIVT*ATSGKG Trigger: CCCCTTGCCTGATGTGGCCCATGTCACGATGCTGTC...TGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCAGTTTACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CACGTAAACTGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCATCCTTCAGCGCCTTCTaGCTGGCAGACAGCATCGTG | + |
|
Preference number: 4 (lower is better) Translates to: HVNWSFISMDHWIRQLPASFSAF*LADSIV Trigger: CACGATGCTGTCTGCCAGCCAGAAGGCGCTGAAGGA...TGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCAGTTTACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CACGTAAACTGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCACGGAGAAGCCCTGAATaGGGTTGGCCTTCATGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: HVNWSFISMDHWIRQLPARRSPE*GWPSCP Trigger: TGGACATGAAGGCCAACCCCATTCAGGGCTTCTCCG...TGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCAGTTTACGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS-3UTR CCA 90 bp | CACGTAAACTGGTCTTTTATTAGCATGGACCATTGGATACGGCAGCTTCCAGCAGAACTTTCTCATCCCTaGAAAGGCTGCTCCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: HVNWSFISMDHWIRQLPAELSHP*KGCSSR Trigger: CCGACTGGAGCAGCCTTTCCAGGGATGAGAAAGTTC...TGCTGGAAGCTGCCGTATCCAATGGTCCATGCTAATAAAAGACCAGTTTACGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS GCA 90 bp | GTAAGTGGGGAAAGCATAGTCTTCACTCTTCACAACACTCCCATGTaGTCGAAGGCACACCGAAGTAGAAATGGCTCTCTTGCCAATCAG | + |
|
Preference number: 5 (lower is better) Translates to: VSGESIVFTLHNTPM*SKAHRSRNGSLANQ Trigger: CTGATTGGCAAGAGAGCCATTTCTACTTCGGTGTGCCTTCGAGCACATGGGAGTGTTGTGAAGAGTGAAGACTATGCTTTCCCCACTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034276.13 ENSMUST00000181586.8 |
||
| CDS GCA 72 bp | CAAGCAACCATCCCTGCTCCTGGGCCTAAGGGCATGTaGTCGAAGGCACACCGAAGTAGAAATGGCTCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: QATIPAPGPKGM*SKAHRSRNGSL Trigger: AAGAGAGCCATTTCTACTTCGGTGTGCCTTCGAGCACATGCCCTTAGGCCCAGGAGCAGGGATGGTTGCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181847.8 |
||