Pregenerated sensors for COX19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045438Ensembl transcript IDs: ENSMUST00000049630.13, ENSMUST00000133951.2, ENSMUST00000198966.5
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGCCAGGGGTTTAAACAGCCCACAAGCGACTCTGAGGATGGCCTaGGCTCAGCCACAGCTCAGCCCTGCTTGGTGCTCACAGTACAGG | + |
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Preference number: 1 (lower is better) Translates to: AARGLNSPQATLRMA*AQPQLSPAWCSQYR Trigger: CCTGTACTGTGAGCACCAAGCAGGGCTGAGCTGTGGCTGAGCCCAGGCCATCCTCAGAGTCGCTTGTGGGCTGTTTAAACCCCTGGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 90 bp | TCAGCCACAGCTCAGCCCTGCTTGGTGCTCACAGTACAGGGTCAGTaGTCAGCACCCAGGGGTGACACAGAGACATGGTGTTCCTCTAAC | + |
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Preference number: 1 (lower is better) Translates to: SATAQPCLVLTVQGQ*SAPRGDTETWCSSN Trigger: GTTAGAGGAACACCATGTCTCTGTGTCACCCCTGGGTGCTGAGCACTGACCCTGTACTGTGAGCACCAAGCAGGGCTGAGCTGTGGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 90 bp | AGCCATCAACATTGCTACCCTGTGTTCCTGGCATCTCGGTGGAGATaGGTGGACAGGGGAGCTCTCATGGATGGAGCCACTGTGATGCGC | + |
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Preference number: 1 (lower is better) Translates to: SHQHCYPVFLASRWR*VDRGALMDGATVMR Trigger: GCGCATCACAGTGGCTCCATCCATGAGAGCTCCCCTGTCCACCCATCTCCACCGAGATGCCAGGAACACAGGGTAGCAATGTTGATGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 90 bp | ATGCAGCATAAACCCAAACTGCTGCTAGACTGGGACAGCGGAAGCTaGGCTGGGAGATCTACCCAGCCTGGTGAGCCGAGTTCAGTGCCT | + |
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Preference number: 1 (lower is better) Translates to: MQHKPKLLLDWDSGS*AGRSTQPGEPSSVP Trigger: AGGCACTGAACTCGGCTCACCAGGCTGGGTAGATCTCCCAGCTCAGCTTCCGCTGTCCCAGTCTAGCAGCAGTTTGGGTTTATGCTGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 90 bp | ACTGGGCTACTGAAAGGAAAAGCTAGGTTTAGAAACAGTTTGAGGTaGCCAGAAAACAGTATGCAGCATAAACCCAAACTGCTGCTAGAC | + |
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Preference number: 1 (lower is better) Translates to: TGLLKGKARFRNSLR*PENSMQHKPKLLLD Trigger: GTCTAGCAGCAGTTTGGGTTTATGCTGCATACTGTTTTCTGGTCACCTCAAACTGTTTCTAAACCTAGCTTTTCCTTTCAGTAGCCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR-3UTR TCA 90 bp | AACCCTGGGTTCCACTCCCCAGTACCCCAGACACGGAGGCAGAAGGATCAAGAGGAGGACTCAGATCTGTaGCAGGCTGAGTCGCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: NPGFHSPVPQTRRQKDQEEDSDL*QAESLW Trigger: CCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTC...CTCTTGATCCTTCTGCCTCCGTGTCTGGGGTACTGGGGAGTGGAACCCAGGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGTTCAGTCCTGACGGGTCCTGTGACACACAGACGGAAGAAAAACACACTGGTCCCCCTGCACTGTaGGCAGAAGGGCTCAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: AGFSPDGSCDTQTEEKHTGPPAL*AEGLSS Trigger: AGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACC...AGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR-3UTR CCA 90 bp | TGTCCTCTGACCCACCTACAAATTACACACACACACACACACACACACACACACCTGGCCAGGGCTCTGTaGTGTGACAGCCACTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: CPLTHLQITHTHTHTHTHLARAL*CDSHSG Trigger: CCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAG...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGTAGGTGGGTCAGAGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 90 bp | AAAGCAAGAAATTGTGCTAGAGACATGGTTCAGGCAGTAGAGTACTaGCCTAGCCTGCAGGGAACCCTGGGTTCCACTCCCCAGTACCCC | + |
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Preference number: 2 (lower is better) Translates to: KARNCARDMVQAVEY*PSLQGTLGSTPQYP Trigger: GGGGTACTGGGGAGTGGAACCCAGGGTTCCCTGCAGGCTAGGCAAGTACTCTACTGCCTGAACCATGTCTCTAGCACAATTTCTTGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 90 bp | GTCTGTGAGCACAAAAGGCGGACATTTTCCTGTCGCTTGGTTTCATaGACAGGTTCCAGTGTGAGGACTCAGATCTGTGACAGGCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: VCEHKRRTFSCRLVS*TGSSVRTQICDRLS Trigger: ACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 90 bp | ATTGGTCAAATATGTCAAAAGCCAAACAGTGTCTCACTTCCTACTTaGTATTCCAGCTTTGTTCACAGGAGAGAACACAGAGAAAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: IGQICQKPNSVSLPT*YSSFVHRREHRERE Trigger: TTCCCTTTCTCTGTGTTCTCTCCTGTGAACAAAGCTGGAATACAAAGTAGGAAGTGAGACACTGTTTGGCTTTTGACATATTTGACCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | TGCACGGGGCAGCACGGGCTGAGTGTCAGGTCCCCCTaGACTGTGGGCAGAAGGGCTCAGCTCTGCTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: CTGQHGLSVRSP*TVGRRAQLCSR Trigger: CCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | AGGTCCCCCTGCACTGTGGGCAGAAGGGCTCAGCTCTaGTCCAGGCTGGGGACAAGGTCCTGTGGCTCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RSPCTVGRRAQL*SRLGTRSCGSL Trigger: AAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | AAGCCGAGCTTCTCTAGCGGCTCCGGTGCCATCAGCTaGCTTCAGGCCATCTGCCCAGTGGTTGCAGAGATG | + |
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Preference number: 3 (lower is better) Translates to: KPSFSSGSGAIS*LQAICPVVAEM Trigger: CATCTCTGCAACCACTGGGCAGATGGCCTGAAGGCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| 3UTR GCA 72 bp | GCTCAGCCCTGCTTGGTGCTCACAGTACAGGGTCAGTaGTCAGCACCCAGGGGTGACACAGAGACATGGTGT | + |
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Preference number: 3 (lower is better) Translates to: AQPCLVLTVQGQ*SAPRGDTETWC Trigger: ACACCATGTCTCTGTGTCACCCCTGGGTGCTGAGCACTGACCCTGTACTGTGAGCACCAAGCAGGGCTGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 72 bp | ACCCCCTTTCTGGTGCTGGCATTCTGCTGGTGTCTTTaGATCACCCGCCTCAGCATGAAGGCAGCCAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: TPFLVLAFCWCL*ITRLSMKAARG Trigger: ACCCCTGGCTGCCTTCATGCTGAGGCGGGTGATCCAAAGACACCAGCAGAATGCCAGCACCAGAAAGGGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | GAGTCGCTGTGGAATGCTGGCCAGGGCTCTGTGGTGTaGCAGCCACTCTGGGCGGGATATCAAATCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: ESLWNAGQGSVV*QPLWAGYQITA Trigger: TGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | TGGCTCAGTCGTCAGAGGGCTTGGCTGCTCCATCACTaGAATTATGACCAGTGCTGGGGTGACACCAGCGTC | + |
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Preference number: 3 (lower is better) Translates to: WLSRQRAWLLHH*NYDQCWGDTSV Trigger: GACGCTGGTGTCACCCCAGCACTGGTCATAATTGCAGTGATGGAGCAGCCAAGCCCTCTGACGACTGAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | AGCGGCTCCGGTGCCATCAGCTGCCTTCAGGCCATCTaGCCAGTGGTTGCAGAGATGAGTATGGTAACTGTG | + |
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Preference number: 3 (lower is better) Translates to: SGSGAISCLQAI*PVVAEMSMVTV Trigger: CACAGTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAGGCAGCTGATGGCACCGGAGCCGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| 3UTR TCA 72 bp | GAAGATGCTAGCCCAGCTCCTAGTGCACAGCTGACCTaGCCTGTGGAGGCACACACTGGGCTACTGAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: EDASPAPSAQLT*PVEAHTGLLKG Trigger: TCCTTTCAGTAGCCCAGTGTGTGCCTCCACAGGTCAGGTCAGCTGTGCACTAGGAGCTGGGCTAGCATCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | GGGAACCGAGGTCAACAGAGGAAACATTTCGGTGTGTaGTGCAGGGGTGAGCCATGTTCTAAAGTCCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: GNRGQQRKHFGV*CRGEPCSKVPR Trigger: CCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR GCA 72 bp | AACCGAGGTCAACAGAGGAAACATTTCGGTGTGTGCTaGAGGGGTGAGCCATGTTCTAAAGTCCCCAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: NRGQQRKHFGVC*RGEPCSKVPRE Trigger: CTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR-3UTR CAA 90 bp | ATGGTTCAGGCAGTAGAGTACTTGCCTAGCCTGCAGGGAACCCTGGGTTCCACTAGAAGGATCAAGAGTTaGAAGCCATCCTTGGCTACA | + |
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Preference number: 3 (lower is better) Translates to: MVQAVEYLPSLQGTLGSTRRIKS*KPSLAT Trigger: TGTAGCCAAGGATGGCTTCAAACTCTTGATCCTTCT...AGTGGAACCCAGGGTTCCCTGCAGGCTAGGCAAGTACTCTACTGCCTGAACCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 72 bp | CTCAGTAAGTCAAACACAACAAAATGGCTGACGAGATaGCTCAGTCGTCAGAGGGCTTGGCTGCTCCATCAC | + |
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Preference number: 3 (lower is better) Translates to: LSKSNTTKWLTR*LSRQRAWLLHH Trigger: GTGATGGAGCAGCCAAGCCCTCTGACGACTGAGCCATCTCGTCAGCCATTTTGTTGTGTTTGACTTACTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 72 bp | CACTTGGGAGGTGGAAGCGGAGTTCAAGACCAGCCTTaGCTACAGAGTGAACCATCTCTCAGTAAGTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: HLGGGSGVQDQP*LQSEPSLSKSN Trigger: GTTTGACTTACTGAGAGATGGTTCACTCTGTAGCCAAGGCTGGTCTTGAACTCCGCTTCCACCTCCCAAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | AACCATCTCTCAGTAAGTCAAACACAACAAAATGGCTaGCGAGATGGCTCAGTCGTCAGAGGGCTTGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: NHLSVSQTQQNG*RDGSVVRGLGC Trigger: GCAGCCAAGCCCTCTGACGACTGAGCCATCTCGTCAGCCATTTTGTTGTGTTTGACTTACTGAGAGATGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 72 bp | AATAGCAGGACTCTGAATTTAATTCTGGCTTCCACTTaGGAGGTGGAAGCGGAGTTCAAGACCAGCCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: NSRTLNLILAST*EVEAEFKTSLG Trigger: GCCAAGGCTGGTCTTGAACTCCGCTTCCACCTCCCAAGTGGAAGCCAGAATTAAATTCAGAGTCCTGCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | AACACAGAGAAAGGGAAGCCAGCTGATATGAGTCTGTaGGCACAAAAGGCGGACATTTTCCTGTCGCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: NTEKGKPADMSL*AQKADIFLSLG Trigger: ACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTCCCTTTCTCTGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | CAGGAGAGAACACAGAGAAAGGGAAGCCAGCTGATATaGGTCTGTGAGCACAAAAGGCGGACATTTTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: QERTQRKGSQLI*VCEHKRRTFSC Trigger: ACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTCCCTTTCTCTGTGTTCTCTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CCA 72 bp | AGTGAACCATCTCTCAGTAAGTCAAACACAACAAAATaGCTGACGAGATGGCTCAGTCGTCAGAGGGCTTGG | + |
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Preference number: 3 (lower is better) Translates to: SEPSLSKSNTTK*LTRWLSRQRAW Trigger: CCAAGCCCTCTGACGACTGAGCCATCTCGTCAGCCATTTTGTTGTGTTTGACTTACTGAGAGATGGTTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | GTTCACAGGAGAGAACACAGAGAAAGGGAAGCCAGCTaGTATGAGTCTGTGAGCACAAAAGGCGGACATTTT | + |
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Preference number: 3 (lower is better) Translates to: VHRREHREREAS*YESVSTKGGHF Trigger: AAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTCCCTTTCTCTGTGTTCTCTCCTGTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR TCA 72 bp | CTGAAAGGAAAAGCTAGGTTTAGAAACAGTTTGAGGTaGCCAGAAAACAGTATGCAGCATAAACCCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: LKGKARFRNSLR*PENSMQHKPKL Trigger: CAGTTTGGGTTTATGCTGCATACTGTTTTCTGGTCACCTCAAACTGTTTCTAAACCTAGCTTTTCCTTTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | TCTCTAGCGGCTCCGGTGCCATCAGCTGCCTTCAGGCCATCTGCCCAGTGGTTGGGTCCAGCGGGAAGCTaGCTTTGTCTGGGGGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: SLAAPVPSAAFRPSAQWLGPAGS*LCLGAA Trigger: CGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACC...CAACCACTGGGCAGATGGCCTGAAGGCAGCTGATGGCACCGGAGCCGCTAGAGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| CDS-3UTR CCA 90 bp | ACTGTGGGCAGAAGGGCTCAGCTCTGCTCCAGGCTGGGGACAAGGTCCTGTGGCTCTGGGGGCCGCGGCTaGAAGCTTTTGGTCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: TVGRRAQLCSRLGTRSCGSGGRG*KLLVPK Trigger: CTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGA...GCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | TCCCCCTGCACTGTGGGCAGAAGGGCTCAGCTCTGCTCCAGGCTGGGGACAAGGTCCGGTGCCATCAGCTaGCTTTGCATCCTGCACATT | + |
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Preference number: 4 (lower is better) Translates to: SPCTVGRRAQLCSRLGTRSGAIS*LCILHI Trigger: AATGTGCAGGATGCAAAGGCAGCTGATGGCACCGGA...CCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049630.13 ENSMUST00000198966.5 |
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| 3UTR CAA 72 bp | CACCCCCTTTCTGGTGCTGGCATTCTGCTGGTGTCTTaGGATCACCCGCCTCAGCATGAAGGCAGCCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: HPLSGAGILLVS*DHPPQHEGSQG Trigger: CCCCTGGCTGCCTTCATGCTGAGGCGGGTGATCCAAAGACACCAGCAGAATGCCAGCACCAGAAAGGGGGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | GGCTCCGGTGCCATCAGCTGCCTTCAGGCCATCTGCCCAGTGGTTGCAGAGATGGAGGCTGGCTCTTACTaGCACTTTGCATCCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: GSGAISCLQAICPVVAEMEAGSY*HFASCT Trigger: TGTGCAGGATGCAAAGTGGCAGTAAGAGCCAGCCTC...CATCTCTGCAACCACTGGGCAGATGGCCTGAAGGCAGCTGATGGCACCGGAGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| CDS-3UTR CCA 90 bp | TGGCCAGGGCTCTGTGGTGTGACAGCCACTCTGGGCGGGATATCAAATCACAGCGCGGCTGGAAGCTTTTaGTCCCGAAGTTCATTGCGG | + |
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Preference number: 4 (lower is better) Translates to: WPGLCGVTATLGGISNHSAAGSF*SRSSLR Trigger: CCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGC...GCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR CCA 90 bp | CATCAGCTGCCTTCAGGCCATCTGCCCAGTGGTTGCAGAGATGAGTATGGTAACGAAGCTGCCTTTGTCTaGGGGCCGCGGCTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HQLPSGHLPSGCRDEYGNEAAFV*GPRLEA Trigger: AGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTC...GTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAGGCAGCTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| CDS-3UTR GCA 90 bp | GAACCCTGGGTTCCACTCCCCAGTACCCCAGACACGGAGGCAGAAGGATCAAGATCCGGTGCCATCAGCTaGCTTTGCATCCTGCACATT | + |
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Preference number: 4 (lower is better) Translates to: EPWVPLPSTPDTEAEGSRSGAIS*LCILHI Trigger: AATGTGCAGGATGCAAAGGCAGCTGATGGCACCGGA...TCTTGATCCTTCTGCCTCCGTGTCTGGGGTACTGGGGAGTGGAACCCAGGGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | GCAAGAACAGACTCCTTTAAGCTGTCCTCTGACCCACCTACAAATTACACACACGGTCCAGCGGGAAGCTaGCTTTGTCTGGGGGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: ARTDSFKLSSDPPTNYTHGPAGS*LCLGAA Trigger: CGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACC...GTGTGTGTAATTTGTAGGTGGGTCAGAGGACAGCTTAAAGGAGTCTGTTCTTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | TGCACTGTGGGCAGAAGGGCTCAGCTCTGCTCCAGGCTGGGGACAAGGTCCTGTTCAACATTCATCCTTTaGCTCTGGCTTCCCTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: CTVGRRAQLCSRLGTRSCSTFIL*LWLPFH Trigger: ATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGA...ACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049630.13 ENSMUST00000198966.5 |
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| CDS-3UTR CCA 90 bp | CTGACCCACCTACAAATTACACACACACACACACACACACACACACACACACACGAAGCTGCCTTTGTCTaGGGGCCGCGGCTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: LTHLQITHTHTHTHTHTHEAAFV*GPRLEA Trigger: AGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTC...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGTAGGTGGGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR CCA 90 bp | ATGGTTCAGGCAGTAGAGTACTTGCCTAGCCTGCAGGGAACCCTGGGTTCCACTTTACATTCACCGAAGTaGTCCAGCGGGAAGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: MVQAVEYLPSLQGTLGSTLHSPK*SSGKLP Trigger: AGGCAGCTTCCCGCTGGACCACTTCGGTGAATGTAA...AGTGGAACCCAGGGTTCCCTGCAGGCTAGGCAAGTACTCTACTGCCTGAACCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 72 bp | AATTGTGCTAGAGACATGGTTCAGGCAGTAGAGTACTaGCCTAGCCTGCAGGGAACCCTGGGTTCCACTCCC | + |
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Preference number: 4 (lower is better) Translates to: NCARDMVQAVEY*PSLQGTLGSTP Trigger: GGGAGTGGAACCCAGGGTTCCCTGCAGGCTAGGCAAGTACTCTACTGCCTGAACCATGTCTCTAGCACAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 72 bp | GTCTGTGAGCACAAAAGGCGGACATTTTCCTGTCGCTaGGTTTCATTGACAGGTTCCAGTGTGAGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: VCEHKRRTFSCR*VSLTGSSVRTQ Trigger: CTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR GCA 90 bp | CCTTCAGGCCATCTGCCCAGTGGTTGCAGAGATGAGTATGGTAACTGTGGGAGGCTCTTACTGCCACTTTaGATCCTGCACATTAAATAC | + |
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Preference number: 4 (lower is better) Translates to: PSGHLPSGCRDEYGNCGRLLLPL*ILHIKY Trigger: GTATTTAATGTGCAGGATGCAAAGTGGCAGTAAGAG...CCTCCCACAGTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| 3UTR CAA 72 bp | CACAAAAGGCGGACATTTTCCTGTCGCTTGGTTTCATaGACAGGTTCCAGTGTGAGGACTCAGATCTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: HKRRTFSCRLVS*TGSSVRTQICD Trigger: GTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 72 bp | ACTCTGCCGCTCTTGACTGTTAAGTATGTTTGTCATTaGCTGACGAGATACACCAAAGGCTTGGAAAATAGC | + |
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Preference number: 4 (lower is better) Translates to: TLPLLTVKYVCH*LTRYTKGLENS Trigger: GCTATTTTCCAAGCCTTTGGTGTATCTCGTCAGCAAATGACAAACATACTTAACAGTCAAGAGCGGCAGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| 3UTR CAA 72 bp | ATATGTCAAAAGCCAAACAGTGTCTCACTTCCTACTTaGTATTCCAGCTTTGTTCACAGGAGAGAACACAGA | + |
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Preference number: 4 (lower is better) Translates to: ICQKPNSVSLPT*YSSFVHRREHR Trigger: TCTGTGTTCTCTCCTGTGAACAAAGCTGGAATACAAAGTAGGAAGTGAGACACTGTTTGGCTTTTGACATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR CAA 90 bp | CACTGTGGGCAGAAGGGCTCAGCTCTGCTCCAGGCTGGGGACAAGGTCCTGTGGAGCGGGAAGCTGCCTTaGTCTGGGGGCCGCGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: HCGQKGSALLQAGDKVLWSGKLP*SGGRGW Trigger: CCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCT...CCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS-3UTR CAA 90 bp | TCTCTAGCGGCTCCGGTGCCATCAGCTGCCTTCAGGCCATCTGCCCAGTGGTTGAGCGGGAAGCTGCCTTaGTCTGGGGGCCGCGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLAAPVPSAAFRPSAQWLSGKLP*SGGRGW Trigger: CCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCT...CAACCACTGGGCAGATGGCCTGAAGGCAGCTGATGGCACCGGAGCCGCTAGAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133951.2 |
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| CDS-3UTR CAA 90 bp | GCAGGGTTCAGTCCTGACGGGTCCTGTGACACACAGACGGAAGAAAAACACACTCGCGGCTGGAAGCTTTaGGTCCCGAAGTTCATTGCG | + |
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Preference number: 5 (lower is better) Translates to: AGFSPDGSCDTQTEEKHTRGWKL*VPKFIA Trigger: CGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCG...AGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS GCA 90 bp | CTAAAGCCGAGCTTCTCTAGCGGCTCCGGTGCCATCAGCTGCCTTTaGATCCTGCACATTAAATACTCTTTAGATTCATTTCTGCACAAA | + |
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Preference number: 5 (lower is better) Translates to: LKPSFSSGSGAISCL*ILHIKYSLDSFLHK Trigger: TTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAGGCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049630.13 ENSMUST00000198966.5 |
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| CDS CCA 72 bp | TCCAGCGGGAAGCTGCCTTTGTCTGGGGGCCGCGGCTaGAAGCTTTTGGTCCCGAAGTTCATTGCGGTCGAC | + |
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Preference number: 6 (lower is better) Translates to: SSGKLPLSGGRG*KLLVPKFIAVD Trigger: GTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS CCA 72 bp | TTCACCGAAGTGGTCCAGCGGGAAGCTGCCTTTGTCTaGGGGCCGCGGCTGGAAGCTTTTGGTCCCGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: FTEVVQREAAFV*GPRLEAFGPEV Trigger: AACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACCACTTCGGTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS CAA 72 bp | TTACATTCACCGAAGTGGTCCAGCGGGAAGCTGCCTTaGTCTGGGGGCCGCGGCTGGAAGCTTTTGGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: LHSPKWSSGKLP*SGGRGWKLLVP Trigger: CGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACCACTTCGGTGAATGTAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049630.13 |
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| CDS GCA 72 bp | AGCTTCTCTAGCGGCTCCGGTGCCATCAGCTGCCTTTaGATCCTGCACATTAAATACTCTTTAGATTCATTT | + |
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Preference number: 6 (lower is better) Translates to: SFSSGSGAISCL*ILHIKYSLDSF Trigger: AAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAGGCAGCTGATGGCACCGGAGCCGCTAGAGAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049630.13 ENSMUST00000198966.5 |
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