Pregenerated sensors for COX18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035505Ensembl transcript IDs: ENSMUST00000048363.10, ENSMUST00000118816.6, ENSMUST00000148480.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCAGTGCTGAGGTTCCGGAGGGCGACAGAGATGAAAACCCACATTaGAAGCTGGACCCAGACCAGCACCGTGGCTTTGAAAGGGTGGCA | + |
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Preference number: 1 (lower is better) Translates to: PSAEVPEGDRDENPH*KLDPDQHRGFERVA Trigger: TGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTGGGTTTTCATCTCTGTCGCCCTCCGGAACCTCAGCACTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CCA 90 bp | CTGAGGTTCCGGAGGGCGACAGAGATGAAAACCCACATTGGAAGCTaGACCCAGACCAGCACCGTGGCTTTGAAAGGGTGGCAGTTGTCA | + |
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Preference number: 1 (lower is better) Translates to: LRFRRATEMKTHIGS*TQTSTVALKGWQLS Trigger: TGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTGGGTTTTCATCTCTGTCGCCCTCCGGAACCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CCA 90 bp | CACATTGGAAGCTGGACCCAGACCAGCACCGTGGCTTTGAAAGGGTaGCAGTTGTCACGGACATACAGCTCTGAGATAAGTCTCCGCATG | + |
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Preference number: 1 (lower is better) Translates to: HIGSWTQTSTVALKG*QLSRTYSSEISLRM Trigger: CATGCGGAGACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR TCA 90 bp | CACCGTGGCTTTGAAAGGGTGGCAGTTGTCACGGACATACAGCTCTaGGATAAGTCTCCGCATGTTCTTCAGATAGGTGAGTCTAGCCAC | + |
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Preference number: 1 (lower is better) Translates to: HRGFERVAVVTDIQL*DKSPHVLQIGESSH Trigger: GTGGCTAGACTCACCTATCTGAAGAACATGCGGAGACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CAA 90 bp | GGAAGCTGGACCCAGACCAGCACCGTGGCTTTGAAAGGGTGGCAGTaGTCACGGACATACAGCTCTGAGATAAGTCTCCGCATGTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: GSWTQTSTVALKGWQ*SRTYSSEISLRMFF Trigger: GAAGAACATGCGGAGACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CAA 90 bp | ATGAAAACCCACATTGGAAGCTGGACCCAGACCAGCACCGTGGCTTaGAAAGGGTGGCAGTTGTCACGGACATACAGCTCTGAGATAAGT | + |
|
Preference number: 2 (lower is better) Translates to: MKTHIGSWTQTSTVA*KGWQLSRTYSSEIS Trigger: ACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTGGGTTTTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGAACGTCAAATACATCTaGATTTCCCACAGTGCTTCA | + |
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Preference number: 2 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMNVKYI*ISHSAS Trigger: TGAAGCACTGTGGGAAATTCAGATGTATTTGACGTT...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| 3UTR-3UTR GCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGACTTCCAAATTCAATaGATGAAACTGACAGTGACA | + |
|
Preference number: 2 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMDFQIQ*MKLTVT Trigger: TGTCACTGTCAGTTTCATGCATTGAATTTGGAAGTC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| 3UTR-3UTR CAA 90 bp | GGCCCCAGTGCTGAGGTTCCGGAGGGCGACAGAGATGAAAACCCACATTGGAAGACCAGCACCGTGGCTTaGAAAGGGTGGCAGTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: GPSAEVPEGDRDENPHWKTSTVA*KGWQLS Trigger: TGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGT...CTTCCAATGTGGGTTTTCATCTCTGTCGCCCTCCGGAACCTCAGCACTGGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CCA 72 bp | CGGAGGGCGACAGAGATGAAAACCCACATTGGAAGCTaGACCCAGACCAGCACCGTGGCTTTGAAAGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: RRATEMKTHIGS*TQTSTVALKGW Trigger: CCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTGGGTTTTCATCTCTGTCGCCCTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR TCA 72 bp | ACATTGGAAGCTGGACCCAGACCAGCACCGTGGCTTTaGAAGGGTGGCAGTTGTCACGGACATACAGCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: TLEAGPRPAPWL*KGGSCHGHTAL Trigger: CAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR-3UTR CAA 90 bp | TCTGAATGTGTGGCCCCAGTGCTGAGGTTCCGGAGGGCGACAGAGATGAAAACCTTGAAAGGGTGGCAGTaGTCACGGACATACAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: SECVAPVLRFRRATEMKTLKGWQ*SRTYSS Trigger: AGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAA...GGTTTTCATCTCTGTCGCCCTCCGGAACCTCAGCACTGGGGCCACACATTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CCA 72 bp | AGCTGGACCCAGACCAGCACCGTGGCTTTGAAAGGGTaGCAGTTGTCACGGACATACAGCTCTGAGATAAGT | + |
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Preference number: 3 (lower is better) Translates to: SWTQTSTVALKG*QLSRTYSSEIS Trigger: ACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR TCA 72 bp | TTTGAAAGGGTGGCAGTTGTCACGGACATACAGCTCTaGGATAAGTCTCCGCATGTTCTTCAGATAGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: FERVAVVTDIQL*DKSPHVLQIGE Trigger: CTCACCTATCTGAAGAACATGCGGAGACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CAA 72 bp | ACCCAGACCAGCACCGTGGCTTTGAAAGGGTGGCAGTaGTCACGGACATACAGCTCTGAGATAAGTCTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: TQTSTVALKGWQ*SRTYSSEISLR Trigger: GCGGAGACTTATCTCAGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| 3UTR CAA 72 bp | CACATTGGAAGCTGGACCCAGACCAGCACCGTGGCTTaGAAAGGGTGGCAGTTGTCACGGACATACAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HIGSWTQTSTVA*KGWQLSRTYSS Trigger: AGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGTCTGGGTCCAGCTTCCAATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148480.2 |
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| CDS-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTCTGTGCGAGGCCCATaGGGCTGGAGCACAGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMSVRGP*GWSTAS Trigger: ACTGGCTGTGCTCCAGCCTCATGGGCCTCGCACAGA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGCAGCAGCAGGTTCTGTaGGAGGCCCATGAGGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMQQQVL*EAHEAG Trigger: TCCAGCCTCATGGGCCTCGCACAGAACCTGCTGCTG...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGCCAGCACCGTGGCTTTaGAAGGGTGGCAGTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMPAPWL*KGGSCH Trigger: GTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGG...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTGGAATCCACTGCGGTaGGGTCAGGAAACCACAGCG | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMWNPLR*GQETTA Trigger: CGCTGTGGTTTCCTGACCTCACCGCAGTGGATTCCA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGACCAGCACCGTGGCTTTaGAAGGGTGGCAGTTGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGPAPWL*KGGSCH Trigger: GTGACAACTGCCACCCTTTCAAAGCCACGGTGCTGG...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGATGGAATCCACTGCGGTaGGGTCAGGAAACCACAGCG | + |
|
Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGWNPLR*GQETTA Trigger: CGCTGTGGTTTCCTGACCTCACCGCAGTGGATTCCA...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGAACCCACATTGGAAGCTaGACCCAGACCAGCACCGTG | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGTHIGS*TQTSTV Trigger: CACGGTGCTGGTCTGGGTCCAGCTTCCAATGTGGGT...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGCAGCTAACTGTTCCTaGACAGAAATGCCTGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMAANCS*TEMPAS Trigger: AGACGCAGGCATTTCTGTTCAGGAACAGTTAGCTGC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGCGCCGAGGGTACTGTTaGAGCAACTGGAATCATCAA | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMRRGYC*SNWNHQ Trigger: TTGATGATTCCAGTTGCTGCAACAGTACCCTCGGCG...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGCAGACTGCAACTTCTTaGTTAAGGCGCTTGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMQTATS*LRRLAM Trigger: CATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTG...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGTGGCTTTGAAAGGGTaGCAGTTGTCACGGACATAC | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMVALKG*QLSRTY Trigger: GTATGTCCGTGACAACTGCCACCCTTTCAAAGCCAC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGATGAAAACCCACATTaGAAGCTGGACCCAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMDENPH*KLDPDQ Trigger: CTGGTCTGGGTCCAGCTTCCAATGTGGGTTTTCATC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGAGGAGGGCGACAGAGATaGAAACCCACATTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGGGRQR*KPTLEA Trigger: AGCTTCCAATGTGGGTTTTCATCTCTGTCGCCCTCC...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGCCACTATCAGTAGGTTaGCAACACCAACAGAGACAG | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMPLSVG*QHQQRQ Trigger: CTGTCTCTGTTGGTGTTGTCAACCTACTGATAGTGG...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGTTCCTGAACAGAAATaGCTGCGTCTGAATGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMVPEQK*LRLNVW Trigger: CCACACATTCAGACGCAGGCATTTCTGTTCAGGAAC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGACGCCGAGGGTACTGTTaGAGCAACTGGAATCATCAA | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGRRGYC*SNWNHQ Trigger: TTGATGATTCCAGTTGCTGCAACAGTACCCTCGGCG...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGACAGACTGCAACTTCTTaGTTAAGGCGCTTGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGQTATS*LRRLAM Trigger: CATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTG...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTTCTTGAAAGGAACTTaGCGCAAAAGGCAGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMFLKGT*RKRQQR Trigger: TCTCTGCTGCCTTTTGCGCCAAGTTCCTTTCAAGAA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR TCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGACCACTATCAGTAGGTTaGCAACACCAACAGAGACAG | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGPLSVG*QHQQRQ Trigger: CTGTCTCTGTTGGTGTTGTCAACCTACTGATAGTGG...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTACTGTTGCAGCAACTaGAATCATCAACACGGATAC | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMYCCSN*NHQHGY Trigger: GTATCCGTGTTGATGATTCCAGTTGCTGCAACAGTA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTCTTTTATTTCTGGTTaGAAGTTTTCCACCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMSFISG*KFSTLA Trigger: GGCTAAGGTGGAAAACTTGCAACCAGAAATAAAAGA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGATACTGTTGCAGCAACTaGAATCATCAACACGGATAC | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGYCCSN*NHQHGY Trigger: GTATCCGTGTTGATGATTCCAGTTGCTGCAACAGTA...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR GCA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGATCTTTTATTTCTGGTTaGAAGTTTTCCACCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: IQCMKLTVTFVIISRVLGSFISG*KFSTLA Trigger: GGCTAAGGTGGAAAACTTGCAACCAGAAATAAAAGA...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS TCA 90 bp | CCATACCGGAAGGGCTGGGAGCCGCGCGCTGCTCCAGGCGGGCGGTaGTCCCGGTGCCGGGAGCCGCAGGGTGGGCAGCGACCTGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: PYRKGWEPRAAPGGR*SRCREPQGGQRPEP Trigger: TGGCTCAGGTCGCTGCCCACCCTGCGGCTCCCGGCACCGGGATCACCGCCCGCCTGGAGCAGCGCGCGGCTCCCAGCCCTTCCGGTATGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS GCA 90 bp | CGCGCCCAGCAGCACTTCCTCCGCGGTGCGCACCGGCGCCGACGCTaGCAGGGCCTCATACCAGCCACCTGGAGAGGCCGCAGACACCGA | + |
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Preference number: 5 (lower is better) Translates to: RAQQHFLRGAHRRRR*QGLIPATWRGRRHR Trigger: TCGGTGTCTGCGGCCTCTCCAGGTGGCTGGTATGAGGCCCTGGCAGCGTCGGCGCCGGTGCGCACCGCGGAGGAAGTGCTGCTGGGCGCG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS CCA 90 bp | GGTGCGCACCGGCGCCGACGCTGCCAGGGCCTCATACCAGCCACCTaGAGAGGCCGCAGACACCGAAGCGGCTGCCCATACCGGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: GAHRRRRCQGLIPAT*RGRRHRSGCPYRKG Trigger: GCCCTTCCGGTATGGGCAGCCGCTTCGGTGTCTGCGGCCTCTCCAGGTGGCTGGTATGAGGCCCTGGCAGCGTCGGCGCCGGTGCGCACC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS GCA 90 bp | GTGCTGAGTATGATGTTGCTCCACCAGGGGAGGCCGGTAGCCTCCTaGGCGCCCAGCAGCACTTCCTCCGCGGTGCGCACCGGCGCCGAC | + |
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Preference number: 5 (lower is better) Translates to: VLSMMLLHQGRPVAS*APSSTSSAVRTGAD Trigger: GTCGGCGCCGGTGCGCACCGCGGAGGAAGTGCTGCTGGGCGCGCAGGAGGCTACCGGCCTCCCCTGGTGGAGCAACATCATACTCAGCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS TCA 90 bp | GGCGGAACCCAGGGGAGCGCAGCAGCAGGTTCTGTGCGAGGCCCATaGGGCTGGAGCACAGCCAGTAGAGAACAAGCGCCGAGGGTACTG | + |
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Preference number: 5 (lower is better) Translates to: GGTQGSAAAGSVRGP*GWSTASREQAPRVL Trigger: CAGTACCCTCGGCGCTTGTTCTCTACTGGCTGTGCTCCAGCCTCATGGGCCTCGCACAGAACCTGCTGCTGCGCTCCCCTGGGTTCCGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS TCA 90 bp | GAACTTGGCGCAAAAGGCAGCAGAGAGGTCTCGGTACGGGGTCTCTaGGTCGGACTTGCTTGGTGGTATCCGGCAGAGCTGGCGGAACCC | + |
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Preference number: 5 (lower is better) Translates to: ELGAKGSREVSVRGL*VGLAWWYPAELAEP Trigger: GGGTTCCGCCAGCTCTGCCGGATACCACCAAGCAAGTCCGACTCAGAGACCCCGTACCGAGACCTCTCTGCTGCCTTTTGCGCCAAGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS TCA 90 bp | GTGAGGTCAGGAAACCACAGCGTCCCGCCAGCAGCTAACTGTTCCTaGACAGAAATGCCGTCTGAATGTGTGGCCCCAGTGCTGAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: VRSGNHSVPPAANCS*TEMPSECVAPVLRF Trigger: GAACCTCAGCACTGGGGCCACACATTCAGACGGCATTTCTGTTCAGGAACAGTTAGCTGCTGGCGGGACGCTGTGGTTTCCTGACCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048363.10 |
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| CDS GCA 90 bp | GAGTCTAGCCACTCTCTTGGACCATCCAAACTGACGGGCACAGACTaGAACTTCTTGGTTAAGGCGCTTGGCGATGTCTTTTATTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: ESSHSLGPSKLTGTD*NFLVKALGDVFYFW Trigger: CCAGAAATAAAAGACATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGTGCCCGTCAGTTTGGATGGTCCAAGAGAGTGGCTAGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS CCA 90 bp | GCACAGCCAGTAGAGAACAAGCGCCGAGGGTACTGTTGCAGCAACTaGAATCATCAACACGGATACAGCTCGGACAAAATTTGTAACATA | + |
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Preference number: 5 (lower is better) Translates to: AQPVENKRRGYCCSN*NHQHGYSSDKICNI Trigger: TATGTTACAAATTTTGTCCGAGCTGTATCCGTGTTGATGATTCCAGTTGCTGCAACAGTACCCTCGGCGCTTGTTCTCTACTGGCTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGTCTCTGAGTCGGACTaGCTTGGTGGTATCCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMVSESD*LGGIRQ Trigger: CTGCCGGATACCACCAAGCAAGTCCGACTCAGAGAC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGACCAGCACCGTGGCTTaGAAAGGGTGGCAGTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMTSTVA*KGWQLS Trigger: TGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGT...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGGCGCCGAGGGTACTGTaGCAGCAACTGGAATCATCA | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMAPRVL*QQLESS Trigger: TGATGATTCCAGTTGCTGCAACAGTACCCTCGGCGC...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGAGTCTCTGAGTCGGACTaGCTTGGTGGTATCCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: IQCMKLTVTFVIISRVLGVSESD*LGGIRQ Trigger: CTGCCGGATACCACCAAGCAAGTCCGACTCAGAGAC...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGACAGACTGCAACTTCTaGGTTAAGGCGCTTGGCGAT | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMTDCNF*VKALGD Trigger: ATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGT...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTTGAAAGGGTGGCAGTaGTCACGGACATACAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMLKGWQ*SRTYSS Trigger: AGAGCTGTATGTCCGTGACAACTGCCACCCTTTCAA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGAACCAGCACCGTGGCTTaGAAAGGGTGGCAGTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: IQCMKLTVTFVIISRVLGTSTVA*KGWQLS Trigger: TGACAACTGCCACCCTTTCAAAGCCACGGTGCTGGT...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTTTCTTGAAAGGAACTaGGCGCAAAAGGCAGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMFLERN*AQKAAE Trigger: CTCTGCTGCCTTTTGCGCCAAGTTCCTTTCAAGAAA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGAACAGACTGCAACTTCTaGGTTAAGGCGCTTGGCGAT | + |
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Preference number: 5 (lower is better) Translates to: IQCMKLTVTFVIISRVLGTDCNF*VKALGD Trigger: ATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGT...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | GGTAGAGATCACACAGGACCTAATCCTGTTCTCAGCAAAACTATGATTTTTATGTCCACTATCAGTAGGTaGACAACACCAACAGAGACA | + |
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Preference number: 5 (lower is better) Translates to: GRDHTGPNPVLSKTMIFMSTISR*TTPTET Trigger: TGTCTCTGTTGGTGTTGTCAACCTACTGATAGTGGA...CATAAAAATCATAGTTTTGCTGAGAACAGGATTAGGTCCTGTGTGATCTCTACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGATTTCTTGAAAGGAACTaGGCGCAAAAGGCAGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: IQCMKLTVTFVIISRVLGFLERN*AQKAAE Trigger: CTCTGCTGCCTTTTGCGCCAAGTTCCTTTCAAGAAA...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS-3UTR CAA 90 bp | ATTCAATGCATGAAACTGACAGTGACATTTGTAATTATTTCAAGGGTGTTGGGATCCACTATCAGTAGGTaGACAACACCAACAGAGACA | + |
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Preference number: 5 (lower is better) Translates to: IQCMKLTVTFVIISRVLGSTISR*TTPTET Trigger: TGTCTCTGTTGGTGTTGTCAACCTACTGATAGTGGA...TCCCAACACCCTTGAAATAATTACAAATGTCACTGTCAGTTTCATGCATTGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS TCA 72 bp | AAGGGCTGGGAGCCGCGCGCTGCTCCAGGCGGGCGGTaGTCCCGGTGCCGGGAGCCGCAGGGTGGGCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: KGWEPRAAPGGR*SRCREPQGGQR Trigger: TCGCTGCCCACCCTGCGGCTCCCGGCACCGGGATCACCGCCCGCCTGGAGCAGCGCGCGGCTCCCAGCCCTT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS GCA 72 bp | CGGCTGCCCATACCGGAAGGGCTGGGAGCCGCGCGCTaGTCCAGGCGGGCGGTGATCCCGGTGCCGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: RLPIPEGLGAAR*SRRAVIPVPGA Trigger: GGCTCCCGGCACCGGGATCACCGCCCGCCTGGAGCAGCGCGCGGCTCCCAGCCCTTCCGGTATGGGCAGCCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS GCA 72 bp | CAGCACTTCCTCCGCGGTGCGCACCGGCGCCGACGCTaGCAGGGCCTCATACCAGCCACCTGGAGAGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: QHFLRGAHRRRR*QGLIPATWRGR Trigger: GCGGCCTCTCCAGGTGGCTGGTATGAGGCCCTGGCAGCGTCGGCGCCGGTGCGCACCGCGGAGGAAGTGCTG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS CCA 72 bp | CGGCGCCGACGCTGCCAGGGCCTCATACCAGCCACCTaGAGAGGCCGCAGACACCGAAGCGGCTGCCCATAC | + |
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Preference number: 6 (lower is better) Translates to: RRRRCQGLIPAT*RGRRHRSGCPY Trigger: GTATGGGCAGCCGCTTCGGTGTCTGCGGCCTCTCCAGGTGGCTGGTATGAGGCCCTGGCAGCGTCGGCGCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS GCA 72 bp | ATGATGTTGCTCCACCAGGGGAGGCCGGTAGCCTCCTaGGCGCCCAGCAGCACTTCCTCCGCGGTGCGCACC | + |
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Preference number: 6 (lower is better) Translates to: MMLLHQGRPVAS*APSSTSSAVRT Trigger: GGTGCGCACCGCGGAGGAAGTGCTGCTGGGCGCGCAGGAGGCTACCGGCCTCCCCTGGTGGAGCAACATCAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS CAA 90 bp | GGCAGAGTGACAGCACCGCGCAGGGCAACGGTGCTGAGTATGATGTaGCTCCACCAGGGGAGGCCGGTAGCCTCCTGCGCGCCCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GRVTAPRRATVLSMM*LHQGRPVASCAPSS Trigger: GCTGCTGGGCGCGCAGGAGGCTACCGGCCTCCCCTGGTGGAGCAACATCATACTCAGCACCGTTGCCCTGCGCGGTGCTGTCACTCTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS CAA 72 bp | ACAGCACCGCGCAGGGCAACGGTGCTGAGTATGATGTaGCTCCACCAGGGGAGGCCGGTAGCCTCCTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: TAPRRATVLSMM*LHQGRPVASCA Trigger: CGCGCAGGAGGCTACCGGCCTCCCCTGGTGGAGCAACATCATACTCAGCACCGTTGCCCTGCGCGGTGCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 ENSMUST00000148480.2 |
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| CDS TCA 72 bp | GCAAAAGGCAGCAGAGAGGTCTCGGTACGGGGTCTCTaGGTCGGACTTGCTTGGTGGTATCCGGCAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: AKGSREVSVRGL*VGLAWWYPAEL Trigger: CAGCTCTGCCGGATACCACCAAGCAAGTCCGACTCAGAGACCCCGTACCGAGACCTCTCTGCTGCCTTTTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS TCA 72 bp | GGAAACCACAGCGTCCCGCCAGCAGCTAACTGTTCCTaGACAGAAATGCCGTCTGAATGTGTGGCCCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GNHSVPPAANCS*TEMPSECVAPV Trigger: CACTGGGGCCACACATTCAGACGGCATTTCTGTTCAGGAACAGTTAGCTGCTGGCGGGACGCTGTGGTTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048363.10 |
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| CDS GCA 72 bp | GCACAGCCAGTAGAGAACAAGCGCCGAGGGTACTGTTaGAGCAACTGGAATCATCAACACGGATACAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: AQPVENKRRGYC*SNWNHQHGYSS Trigger: CGAGCTGTATCCGTGTTGATGATTCCAGTTGCTGCAACAGTACCCTCGGCGCTTGTTCTCTACTGGCTGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS GCA 72 bp | CACTCTCTTGGACCATCCAAACTGACGGGCACAGACTaGAACTTCTTGGTTAAGGCGCTTGGCGATGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: HSLGPSKLTGTD*NFLVKALGDVF Trigger: AAAGACATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGTGCCCGTCAGTTTGGATGGTCCAAGAGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS CAA 72 bp | GGACCATCCAAACTGACGGGCACAGACTGCAACTTCTaGGTTAAGGCGCTTGGCGATGTCTTTTATTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: GPSKLTGTDCNF*VKALGDVFYFW Trigger: CCAGAAATAAAAGACATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGTGCCCGTCAGTTTGGATGGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS CCA 72 bp | GTAGAGAACAAGCGCCGAGGGTACTGTTGCAGCAACTaGAATCATCAACACGGATACAGCTCGGACAAAATT | + |
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Preference number: 6 (lower is better) Translates to: VENKRRGYCCSN*NHQHGYSSDKI Trigger: AATTTTGTCCGAGCTGTATCCGTGTTGATGATTCCAGTTGCTGCAACAGTACCCTCGGCGCTTGTTCTCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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| CDS CAA 90 bp | CACTCTCTTGGACCATCCAAACTGACGGGCACAGACTGCAACTTCTaGGTTAAGGCGCTTGGCGATGTCTTTTATTTCTGGTTGCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: HSLGPSKLTGTDCNF*VKALGDVFYFWLQV Trigger: AACTTGCAACCAGAAATAAAAGACATCGCCAAGCGCCTTAACCAAGAAGTTGCAGTCTGTGCCCGTCAGTTTGGATGGTCCAAGAGAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048363.10 ENSMUST00000118816.6 |
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