RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COX17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046516

Ensembl transcript IDs: ENSMUST00000120495.2

Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGCTCCAGTCAGCAGGTGAGGCAGGGCTTGGGAACTCTGGAGAATaGTGCTTAGGTGTTTCTGAGGCCTGGGGACACTGCTGTACAGAG +
Preference number: 1 (lower is better)
Translates to: ELQSAGEAGLGNSGE*CLGVSEAWGHCCTE
Trigger: CTCTGTACAGCAGTGTCCCCAGGCCTCAGAAACACCTAAGCAGCATTCTCCAGAGTTCCCAAGCCCTGCCTCACCTGCTGACTGGAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp GCTCCTGTACTTCTCAGGCACTGCGCTCATCAGAGGGGCTACGTCTaGAGGTGGAACACAGACTGCTTCTTCTCTGGTGGAGAGTCCCTG +
Preference number: 1 (lower is better)
Translates to: APVLLRHCAHQRGYV*RWNTDCFFSGGESL
Trigger: CAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGACGTAGCCCCTCTGATGAGCGCAGTGCCTGAGAAGTACAGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp CACTGCGCTCATCAGAGGGGCTACGTCTGCAGGTGGAACACAGACTaGTTCTTCTCTGGTGGAGAGTCCCTGCCAAGTGGGACTGTCTTT +
Preference number: 1 (lower is better)
Translates to: HCAHQRGYVCRWNTD*FFSGGESLPSGTVF
Trigger: AAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGACGTAGCCCCTCTGATGAGCGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp GAGGGGCTACGTCTGCAGGTGGAACACAGACTGCTTCTTCTCTGGTaGAGAGTCCCTGCCAAGTGGGACTGTCTTTTGCACCTGGGCATT +
Preference number: 1 (lower is better)
Translates to: EGLRLQVEHRLLLLW*RVPAKWDCLLHLGI
Trigger: AATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGACGTAGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp GTACTTCTCAGGCACTGCGCTCATCAGAGGGGCTACGTCTGCAGGTaGAACACAGACTGCTTCTTCTCTGGTGGAGAGTCCCTGCCAAGT +
Preference number: 1 (lower is better)
Translates to: VLLRHCAHQRGYVCR*NTDCFFSGGESLPS
Trigger: ACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGACGTAGCCCCTCTGATGAGCGCAGTGCCTGAGAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp CCCGAGTCTGTGGAGTGGTTTCCTCGAAGAGGTTCTCAGAGAACGTaGCCTAGCAGTCTATCAAGCTCACCTCAGAGCAGTGCAGGGAAC +
Preference number: 1 (lower is better)
Translates to: PESVEWFPRRGSQRT*PSSLSSSPQSSAGN
Trigger: GTTCCCTGCACTGCTCTGAGGTGAGCTTGATAGACTGCTAGGCCACGTTCTCTGAGAACCTCTTCGAGGAAACCACTCCACAGACTCGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp TCTGCAGGTGGAACACAGACTGCTTCTTCTCTGGTGGAGAGTCCCTaGCAAGTGGGACTGTCTTTTGCACCTGGGCATTTTATAGGGTCT +
Preference number: 1 (lower is better)
Translates to: SAGGTQTASSLVESP*QVGLSFAPGHFIGS
Trigger: AGACCCTATAAAATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp TGCTTCTTCTCTGGTGGAGAGTCCCTGCCAAGTGGGACTGTCTTTTaGACCTGGGCATTTTATAGGGTCTTGATAGGTGCTCTGTCCTGT +
Preference number: 1 (lower is better)
Translates to: CFFSGGESLPSGTVF*TWAFYRVLIGALSC
Trigger: ACAGGACAGAGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp GAATTAAGGAACTTTTATGACCCCTGCTGGAGCAACCCGAGTCTGTaGAGTGGTTTCCTCGAAGAGGTTCTCAGAGAACGTGGCCTAGCA +
Preference number: 1 (lower is better)
Translates to: ELRNFYDPCWSNPSL*SGFLEEVLRERGLA
Trigger: TGCTAGGCCACGTTCTCTGAGAACCTCTTCGAGGAAACCACTCCACAGACTCGGGTTGCTCCAGCAGGGGTCATAAAAGTTCCTTAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp GCCGGGCTTCTCGCCAGGACACACCACCCTAGTCGATATGCAAGATaGAGAAGAATACTGAATGGTCACTCAGGCAGCCAATTCTTAAGA +
Preference number: 1 (lower is better)
Translates to: AGLLARTHHPSRYAR*RRILNGHSGSQFLR
Trigger: TCTTAAGAATTGGCTGCCTGAGTGACCATTCAGTATTCTTCTCCATCTTGCATATCGACTAGGGTGGTGTGTCCTGGCGAGAAGCCCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 90 bp AATCAGCATCTGGAAAGAAGTGTAGTAGTGAGCGAAGCTAACGCCTaGAGCAAGAGATTCCAACCAGAAGTCACGGACTGTGGTCTTGGT +
Preference number: 1 (lower is better)
Translates to: NQHLERSVVVSEANA*SKRFQPEVTDCGLG
Trigger: ACCAAGACCACAGTCCGTGACTTCTGGTTGGAATCTCTTGCTTCAGGCGTTAGCTTCGCTCACTACTACACTTCTTTCCAGATGCTGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp CGCCTGAAGCAAGAGATTCCAACCAGAAGTCACGGACTGTGGTCTTaGTGGGCACATCCCTTTGACATTGATATTTGGACTCAAAGTTCT +
Preference number: 1 (lower is better)
Translates to: RLKQEIPTRSHGLWS*WAHPFDIDIWTQSS
Trigger: AGAACTTTGAGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGTGACTTCTGGTTGGAATCTCTTGCTTCAGGCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp AAAATATCACTGTCAGGAGTGACAAAGTGCCTCTGGTCTGGAGAATaGAAATCATTTAATGCCACCACTACCCTTCACTGTGCCTTCAAA +
Preference number: 1 (lower is better)
Translates to: KISLSGVTKCLWSGE*KSFNATTTLHCAFK
Trigger: TTTGAAGGCACAGTGAAGGGTAGTGGTGGCATTAAATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAGTGATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 90 bp ATCCTAAAAATGAGCATGCTGGCGATAAAATATCACTGTCAGGAGTaGCAAAGTGCCTCTGGTCTGGAGAATGCAAATCATTTAATGCCA +
Preference number: 1 (lower is better)
Translates to: ILKMSMLAIKYHCQE*QSASGLENANHLMP
Trigger: TGGCATTAAATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAGTGATATTTTATCGCCAGCATGCTCATTTTTAGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp TCAAACCAGTTCTCAAAAGCTTTATACTGTCTCAGATCTACTGGGTaGCTCAAATTGTTGGCACCAAACTGTTACAACCCCATTCTAGAA +
Preference number: 1 (lower is better)
Translates to: SNQFSKALYCLRSTG*LKLLAPNCYNPILE
Trigger: TTCTAGAATGGGGTTGTAACAGTTTGGTGCCAACAATTTGAGGCACCCAGTAGATCTGAGACAGTATAAAGCTTTTGAGAACTGGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 90 bp TTCTTAAGACTAACTCAAGATCATTCTACACCTGTTCCCTTAGTCTaGTTTAGGCAGGAAAATAGCCTCACCAAGACACAGACACCTAAA +
Preference number: 1 (lower is better)
Translates to: FLRLTQDHSTPVPLV*FRQENSLTKTQTPK
Trigger: TTTAGGTGTCTGTGTCTTGGTGAGGCTATTTTCCTGCCTAAACCAGACTAAGGGAACAGGTGTAGAATGATCTTGAGTTAGTCTTAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 90 bp TTGACATTGATATTTGGACTCAAAGTTCTTTGGAAACTGGTGATCTaGGGCTTTAGTTTTCTTAGAACAATACCTGGCTTAAAACAAAGC +
Preference number: 1 (lower is better)
Translates to: LTLIFGLKVLWKLVI*GFSFLRTIPGLKQS
Trigger: GCTTTGTTTTAAGCCAGGTATTGTTCTAAGAAAACTAAAGCCTCAGATCACCAGTTTCCAAAGAACTTTGAGTCCAAATATCAATGTCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 90 bp AAACTGGACCTAGGGATTTACAGACTCAGGACCATCAGAAATAAATaGTTCACTGAAATATTAAGTAACTGTCACAATTGTTCTAAACCA +
Preference number: 1 (lower is better)
Translates to: KLDLGIYRLRTIRNK*FTEILSNCHNCSKP
Trigger: TGGTTTAGAACAATTGTGACAGTTACTTAATATTTCAGTGAAGCATTTATTTCTGATGGTCCTGAGTCTGTAAATCCCTAGGTCCAGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp AGTGAAAGAACCCGAGGGAGAGCAGCAGGGGACAGTGCGGCTGGCCCTGTCTCAGAAGAAAGCCATGCCTaGATGCTGGGTCTGAGCCTT +
Preference number: 2 (lower is better)
Translates to: SERTRGRAAGDSAAGPVSEESHA*MLGLSL
Trigger: AAGGCTCAGACCCAGCATCCAGGCATGGCTTTCTTC...TGAGACAGGGCCAGCCGCACTGTCCCCTGCTGCTCTCCCTCGGGTTCTTTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp AGTGAAAGAACCCGAGGGAGAGCAGCAGGGGACAGTGCGGCTGGCCCTGTCTCACTCAGATCTACTGGGTaGCTCAAATTGTTGGCACCA +
Preference number: 2 (lower is better)
Translates to: SERTRGRAAGDSAAGPVSLRSTG*LKLLAP
Trigger: TGGTGCCAACAATTTGAGGCACCCAGTAGATCTGAG...TGAGACAGGGCCAGCCGCACTGTCCCCTGCTGCTCTCCCTCGGGTTCTTTCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp ATACTGGAGAATGTGGCCACGGAACATCTGGGAAGGCCTACTGAGTACCCCTGGCTACCTTTTGGAGAATaGTGCCTGCCTCGCAGCTAC +
Preference number: 2 (lower is better)
Translates to: ILENVATEHLGRPTEYPWLPFGE*CLPRSY
Trigger: GTAGCTGCGAGGCAGGCAGCATTCTCCAAAAGGTAG...CCAGGGGTACTCAGTAGGCCTTCCCAGATGTTCCGTGGCCACATTCTCCAGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR TCA 90 bp CCTGCCGGGCTTCTCGCCAGGACACACCACCCTAGTCGATATGCAAGATGGAGATTTGAGCACTGGAAATaGCCCCTTCCTGCATTATCT +
Preference number: 2 (lower is better)
Translates to: PAGLLARTHHPSRYARWRFEHWK*PLPALS
Trigger: AGATAATGCAGGAAGGGGTCATTTCCAGTGCTCAAA...TCTCCATCTTGCATATCGACTAGGGTGGTGTGTCCTGGCGAGAAGCCCGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp AGTGAAAGAACCCGAGGGAGAGCAGCAGGGGACAGTGCGGCTGGCCCTGTCTCATCCCCAGTCTCATTATaGCCAATTCAAGTGCTTAAT +
Preference number: 2 (lower is better)
Translates to: SERTRGRAAGDSAAGPVSSPVSL*PIQVLN
Trigger: ATTAAGCACTTGAATTGGCCATAATGAGACTGGGGA...TGAGACAGGGCCAGCCGCACTGTCCCCTGCTGCTCTCCCTCGGGTTCTTTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR TCA 90 bp TCTGTCCTGTGTTTAGGTTTGAGCACTGGAAATGACCCCTTCCTGCATTATCTTGCTCCAGTCAGCAGGTaGGGCAGGGCTTGGGAACTC +
Preference number: 2 (lower is better)
Translates to: SVLCLGLSTGNDPFLHYLAPVSR*GRAWEL
Trigger: GAGTTCCCAAGCCCTGCCTCACCTGCTGACTGGAGC...AAGATAATGCAGGAAGGGGTCATTTCCAGTGCTCAAACCTAAACACAGGACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp AGTCACGGACTGTGGTCTTGGTGGGCACATCCCTTTGACATTGATATTTGGACTAGTTCCCCGCAGCCATaGTCCCTGCATCTTCCTGAC +
Preference number: 2 (lower is better)
Translates to: SHGLWSWWAHPFDIDIWTSSPQP*SLHLPD
Trigger: GTCAGGAAGATGCAGGGAGCATGGCTGCGGGGAACT...AGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp CCTTCGAGCAGCACAAACAGGGTGCTTACGAGGCTGAGGTTCCAGTTCTCATCCGGTGCCTCAAATTGTTaGCACCAAACTGTTACAACC +
Preference number: 2 (lower is better)
Translates to: PSSSTNRVLTRLRFQFSSGASNC*HQTVTT
Trigger: GGTTGTAACAGTTTGGTGCCAACAATTTGAGGCACC...GGATGAGAACTGGAACCTCAGCCTCGTAAGCACCCTGTTTGTGCTGCTCGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp GAAGGTCAGTTCCATATTTGTTCCTGCAGGAAGCTCCTCCTTGACCAGAGGGCAGGGTACTACTTTACATaGGGCACTGAGGAAAGCCTC +
Preference number: 2 (lower is better)
Translates to: EGQFHICSCRKLLLDQRAGYYFT*GTEESL
Trigger: GAGGCTTTCCTCAGTGCCCCATGTAAAGTAGTACCC...TGCCCTCTGGTCAAGGAGGAGCTTCCTGCAGGAACAAATATGGAACTGACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp AGTGAAAGAACCCGAGGGAGAGCAGCAGGGGACAGTGCGGCTGGCCCTGTCTCAAAGATCTGTCTTACTTaGGAAGAATGTCAACATCTA +
Preference number: 2 (lower is better)
Translates to: SERTRGRAAGDSAAGPVSKICLT*EECQHL
Trigger: TAGATGTTGACATTCTTCCCAAGTAAGACAGATCTT...TGAGACAGGGCCAGCCGCACTGTCCCCTGCTGCTCTCCCTCGGGTTCTTTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp TCCAACCATGTGCCAGGCAATGATCTAGGTGCTGGGACATGCTGGACACTCTGGTTAGTTCCTTTACCTTaGAAACCAGTGTACCCGAGT +
Preference number: 2 (lower is better)
Translates to: SNHVPGNDLGAGTCWTLWLVPLP*KPVYPS
Trigger: ACTCGGGTACACTGGTTTCCAAGGTAAAGGAACTAA...CCAGAGTGTCCAGCATGTCCCAGCACCTAGATCATTGCCTGGCACATGGTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp TTATCAGGTAGGGCAAGCTCCTTATCTCCTCCCTCCCGTACTTCAAACACAACTGGACTGTGGTCTTGGTaGGCACATCCCTTTGACATT +
Preference number: 2 (lower is better)
Translates to: LSGRASSLSPPSRTSNTTGLWSW*AHPFDI
Trigger: AATGTCAAAGGGATGTGCCCACCAAGACCACAGTCC...AGTTGTGTTTGAAGTACGGGAGGGAGGAGATAAGGAGCTTGCCCTACCTGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR TCA 90 bp ACTGTCTTTTGCACCTGGGCATTTTATAGGGTCTTGATAGGTGCTCTGTCCTGTGAAAGAGCTAGACCGTaGAGAAAGCCATGCCTGGAT +
Preference number: 2 (lower is better)
Translates to: TVFCTWAFYRVLIGALSCERARP*RKPCLD
Trigger: ATCCAGGCATGGCTTTCTTCACGGTCTAGCTCTTTC...ACAGGACAGAGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp TCCAACCATGTGCCAGGCAATGATCTAGGTGCTGGGACATGCTGGACACTCTGGTATATAGCTGGTGATTaGAAAAACAAGAGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: SNHVPGNDLGAGTCWTLWYIAGD*KNKRSH
Trigger: GTGGCTTCTCTTGTTTTTGCAATCACCAGCTATATA...CCAGAGTGTCCAGCATGTCCCAGCACCTAGATCATTGCCTGGCACATGGTTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp TCTGTCCTGTGTTTAGGTTTGAGCACTGGAAATGACCCCTTCCTGCATTATCTTAGGCAAGCTACCTTTTaGAGAATGCTGCCTGCCTCG +
Preference number: 2 (lower is better)
Translates to: SVLCLGLSTGNDPFLHYLRQATF*RMLPAS
Trigger: CGAGGCAGGCAGCATTCTCCAAAAGGTAGCTTGCCT...AAGATAATGCAGGAAGGGGTCATTTCCAGTGCTCAAACCTAAACACAGGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 90 bp TTAGAAACAAGAAACCAAGAGAATTTTCCACTTAGTTCCTTTACCTaGGAAACCAGTGTACCCGAGTTCCCCGCAGCCATGCTCCCTGCA +
Preference number: 2 (lower is better)
Translates to: LETRNQENFPLSSFT*ETSVPEFPAAMLPA
Trigger: TGCAGGGAGCATGGCTGCGGGGAACTCGGGTACACTGGTTTCCAAGGTAAAGGAACTAAGTGGAAAATTCTCTTGGTTTCTTGTTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 90 bp TTCCAACCAGAAGTCACGGACTGTGGTCTTGGTGGGCACATCCCTTaGACATTGATATTTGGACTCAAAGTTCTTTGGAAACTGGTGATC +
Preference number: 2 (lower is better)
Translates to: FQPEVTDCGLGGHIP*TLIFGLKVLWKLVI
Trigger: GATCACCAGTTTCCAAAGAACTTTGAGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGTGACTTCTGGTTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 90 bp TCCCCAGTCTCATTATGGCCAATTCAAGTGCTTAATAGTCATACATaGCTAGTGGCTACCATACTGGAGAATGTGGCCACGGAACATCTG +
Preference number: 2 (lower is better)
Translates to: SPVSLWPIQVLNSHT*LVATILENVATEHL
Trigger: CAGATGTTCCGTGGCCACATTCTCCAGTATGGTAGCCACTAGCAATGTATGACTATTAAGCACTTGAATTGGCCATAATGAGACTGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR TCA 90 bp GAAGGTCAGTTCCATATTTGTTCCTGCAGGAAGCTCCTCCTTGACCAGAGGGCACTTCTAATTAGGTGGTaGCTTTATTGTCTACCTTCT +
Preference number: 2 (lower is better)
Translates to: EGQFHICSCRKLLLDQRALLIRW*LYCLPS
Trigger: AGAAGGTAGACAATAAAGTCACCACCTAATTAGAAG...TGCCCTCTGGTCAAGGAGGAGCTTCCTGCAGGAACAAATATGGAACTGACCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp TCTGTCCTGTGTTTAGGTTTGAGCACTGGAAATGACCCCTTCCTGCATTATCTTGGGAACTCTGGAGAATaGTGCTTAGGTGTTTCTGAG +
Preference number: 2 (lower is better)
Translates to: SVLCLGLSTGNDPFLHYLGNSGE*CLGVSE
Trigger: CTCAGAAACACCTAAGCAGCATTCTCCAGAGTTCCC...AAGATAATGCAGGAAGGGGTCATTTCCAGTGCTCAAACCTAAACACAGGACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR GCA 90 bp GAAGGTCAGTTCCATATTTGTTCCTGCAGGAAGCTCCTCCTTGACCAGAGGGCATATGGCCAATTCAAGTaGTTAATAGTCATACATTGC +
Preference number: 2 (lower is better)
Translates to: EGQFHICSCRKLLLDQRAYGQFK*LIVIHC
Trigger: GCAATGTATGACTATTAAGCACTTGAATTGGCCATA...TGCCCTCTGGTCAAGGAGGAGCTTCCTGCAGGAACAAATATGGAACTGACCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR TCA 90 bp ACTGTCTTTTGCACCTGGGCATTTTATAGGGTCTTGATAGGTGCTCTGTCCTGTTCAGTATATAGCTGGTaGTTGCAAAAACAAGAGAAG +
Preference number: 2 (lower is better)
Translates to: TVFCTWAFYRVLIGALSCSVYSW*LQKQEK
Trigger: CTTCTCTTGTTTTTGCAATCACCAGCTATATACTGA...ACAGGACAGAGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CCA 90 bp TTATATGGATTTGAGCAGATTTCCCATGTTTCTTTTGACCCTTACAAGCAGGAATACTTCAAACACAACTaGTCATGTGTGACATTCCAG +
Preference number: 2 (lower is better)
Translates to: LYGFEQISHVSFDPYKQEYFKHN*SCVTFQ
Trigger: CTGGAATGTCACACATGACCAGTTGTGTTTGAAGTA...TTCCTGCTTGTAAGGGTCAAAAGAAACATGGGAAATCTGCTCAAATCCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp AAGAACCCGAGGGAGAGCAGCAGGGGACAGTGCGGCTaGCCCTGTCTCAGCCTGCCGGGCTTCTCGCCAGGA +
Preference number: 3 (lower is better)
Translates to: KNPRESSRGQCG*PCLSLPGFSPG
Trigger: TCCTGGCGAGAAGCCCGGCAGGCTGAGACAGGGCCAGCCGCACTGTCCCCTGCTGCTCTCCCTCGGGTTCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp CTGGGACATGCTGGACACTCTGGCAGTGAAACCAGATaGTTCCCGGAGCTTACAGCCCAGCCGGAGGGAAGC +
Preference number: 3 (lower is better)
Translates to: LGHAGHSGSETR*FPELTAQPEGS
Trigger: GCTTCCCTCCGGCTGGGCTGTAAGCTCCGGGAAGCATCTGGTTTCACTGCCAGAGTGTCCAGCATGTCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp GTGCTTACGAGGCTGAGGTTCCAGTTCTCATCCTGCTaGGCCCATCCCGGGAATCCAACCATGTGCCAGGCA +
Preference number: 3 (lower is better)
Translates to: VLTRLRFQFSSC*AHPGNPTMCQA
Trigger: TGCCTGGCACATGGTTGGATTCCCGGGATGGGCTCAGCAGGATGAGAACTGGAACCTCAGCCTCGTAAGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp GCAGGTGAGGCAGGGCTTGGGAACTCTGGAGAATGCTaGTTAGGTGTTTCTGAGGCCTGGGGACACTGCTGT +
Preference number: 3 (lower is better)
Translates to: AGEAGLGNSGEC*LGVSEAWGHCC
Trigger: ACAGCAGTGTCCCCAGGCCTCAGAAACACCTAAGCAGCATTCTCCAGAGTTCCCAAGCCCTGCCTCACCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp CATCAGAGGGGCTACGTCTGCAGGTGGAACACAGACTaGTTCTTCTCTGGTGGAGAGTCCCTGCCAAGTGGG +
Preference number: 3 (lower is better)
Translates to: HQRGYVCRWNTD*FFSGGESLPSG
Trigger: CCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCCACCTGCAGACGTAGCCCCTCTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp AGACTTGGAAGTCGTCTAGGAGCTCCAGTCAGCAGGTaGGGCAGGGCTTGGGAACTCTGGAGAATGCTGCTT +
Preference number: 3 (lower is better)
Translates to: RLGSRLGAPVSR*GRAWELWRMLL
Trigger: AAGCAGCATTCTCCAGAGTTCCCAAGCCCTGCCTCACCTGCTGACTGGAGCTCCTAGACGACTTCCAAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp GCCACGGAACATCTGGGAAGGCCTACTGAGTACCCCTaGAACAGTGACAGGAAGGGTACTACTTTACATGGG +
Preference number: 3 (lower is better)
Translates to: ATEHLGRPTEYP*NSDRKGTTLHG
Trigger: CCCATGTAAAGTAGTACCCTTCCTGTCACTGTTCCAGGGGTACTCAGTAGGCCTTCCCAGATGTTCCGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp TGGCTACCATACTGGAGAATGTGGCCACGGAACATCTaGGAAGGCCTACTGAGTACCCCTGGAACAGTGACA +
Preference number: 3 (lower is better)
Translates to: WLPYWRMWPRNI*EGLLSTPGTVT
Trigger: TGTCACTGTTCCAGGGGTACTCAGTAGGCCTTCCCAGATGTTCCGTGGCCACATTCTCCAGTATGGTAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CAA 90 bp CCTGCCGGGCTTCTCGCCAGGACACACCACCCTAGTCGATATGCAAGATGGAGATGGACTCAAAGTTCTTaGGAAACTGGTGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: PAGLLARTHHPSRYARWRWTQSS*ETGDLR
Trigger: CCTCAGATCACCAGTTTCCAAAGAACTTTGAGTCCA...TCTCCATCTTGCATATCGACTAGGGTGGTGTGTCCTGGCGAGAAGCCCGGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp GCTTGGGAACTCTGGAGAATGCTGCTTAGGTGTTTCTaGGGCCTGGGGACACTGCTGTACAGAGTAGAAGAG +
Preference number: 3 (lower is better)
Translates to: AWELWRMLLRCF*GLGTLLYRVEE
Trigger: CTCTTCTACTCTGTACAGCAGTGTCCCCAGGCCTCAGAAACACCTAAGCAGCATTCTCCAGAGTTCCCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp GGAACACAGACTGCTTCTTCTCTGGTGGAGAGTCCCTaGCAAGTGGGACTGTCTTTTGCACCTGGGCATTTT +
Preference number: 3 (lower is better)
Translates to: GTQTASSLVESP*QVGLSFAPGHF
Trigger: AAAATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGAGAAGAAGCAGTCTGTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp GTGGAGTGGTTTCCTCGAAGAGGTTCTCAGAGAACGTaGCCTAGCAGTCTATCAAGCTCACCTCAGAGCAGT +
Preference number: 3 (lower is better)
Translates to: VEWFPRRGSQRT*PSSLSSSPQSS
Trigger: ACTGCTCTGAGGTGAGCTTGATAGACTGCTAGGCCACGTTCTCTGAGAACCTCTTCGAGGAAACCACTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp GGAGAGTCCCTGCCAAGTGGGACTGTCTTTTGCACCTaGGCATTTTATAGGGTCTTGATAGGTGCTCTGTCC +
Preference number: 3 (lower is better)
Translates to: GESLPSGTVFCT*AFYRVLIGALS
Trigger: GGACAGAGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CAA 90 bp ACTGTCTTTTGCACCTGGGCATTTTATAGGGTCTTGATAGGTGCTCTGTCCTGTCAGGTGAGGCAGGGCTaGGGAACTCTGGAGAATGCT +
Preference number: 3 (lower is better)
Translates to: TVFCTWAFYRVLIGALSCQVRQG*GTLENA
Trigger: AGCATTCTCCAGAGTTCCCAAGCCCTGCCTCACCTG...ACAGGACAGAGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp TCTGGTGGAGAGTCCCTGCCAAGTGGGACTGTCTTTTaGACCTGGGCATTTTATAGGGTCTTGATAGGTGCT +
Preference number: 3 (lower is better)
Translates to: SGGESLPSGTVF*TWAFYRVLIGA
Trigger: AGCACCTATCAAGACCCTATAAAATGCCCAGGTGCAAAAGACAGTCCCACTTGGCAGGGACTCTCCACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp AACTTTTATGACCCCTGCTGGAGCAACCCGAGTCTGTaGAGTGGTTTCCTCGAAGAGGTTCTCAGAGAACGT +
Preference number: 3 (lower is better)
Translates to: NFYDPCWSNPSL*SGFLEEVLRER
Trigger: ACGTTCTCTGAGAACCTCTTCGAGGAAACCACTCCACAGACTCGGGTTGCTCCAGCAGGGGTCATAAAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp CTCGCCAGGACACACCACCCTAGTCGATATGCAAGATaGAGAAGAATACTGAATGGTCACTCAGGCAGCCAA +
Preference number: 3 (lower is better)
Translates to: LARTHHPSRYAR*RRILNGHSGSQ
Trigger: TTGGCTGCCTGAGTGACCATTCAGTATTCTTCTCCATCTTGCATATCGACTAGGGTGGTGTGTCCTGGCGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp GAGGTGGAAGAGAAAGAAACCAGCTGGATACTACTATaGAACTGGCCTGTGGCCTGGGTGTCTCTCAACTGT +
Preference number: 3 (lower is better)
Translates to: EVEEKETSWILL*NWPVAWVSLNC
Trigger: ACAGTTGAGAGACACCCAGGCCACAGGCCAGTTTCATAGTAGTATCCAGCTGGTTTCTTTCTCTTCCACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp CCTCCCTCCCGTACTTCAAACACAACTGGTCATGTGTaGCATTCCAGAGCGAGGTGGAAGAGAAAGAAACCA +
Preference number: 3 (lower is better)
Translates to: PPSRTSNTTGHV*HSRARWKRKKP
Trigger: TGGTTTCTTTCTCTTCCACCTCGCTCTGGAATGTCACACATGACCAGTTGTGTTTGAAGTACGGGAGGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp TGTTTCCTTCGTGTTAGCAGGTTTATGTCACAGACTTaGAAGTCGTCTAGGAGCTCCAGTCAGCAGGTGAGG +
Preference number: 3 (lower is better)
Translates to: CFLRVSRFMSQT*KSSRSSSQQVR
Trigger: CCTCACCTGCTGACTGGAGCTCCTAGACGACTTCCAAGTCTGTGACATAAACCTGCTAACACGAAGGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp CTGGAAAGAAGTGTAGTAGTGAGCGAAGCTAACGCCTaGAGCAAGAGATTCCAACCAGAAGTCACGGACTGT +
Preference number: 3 (lower is better)
Translates to: LERSVVVSEANA*SKRFQPEVTDC
Trigger: ACAGTCCGTGACTTCTGGTTGGAATCTCTTGCTTCAGGCGTTAGCTTCGCTCACTACTACACTTCTTTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp GAAACCAAGAGAATTTTCCACTTAGTTCCTTTACCTTaGAAACCAGTGTACCCGAGTTCCCCGCAGCCATGC +
Preference number: 3 (lower is better)
Translates to: ETKRIFHLVPLP*KPVYPSSPQPC
Trigger: GCATGGCTGCGGGGAACTCGGGTACACTGGTTTCCAAGGTAAAGGAACTAAGTGGAAAATTCTCTTGGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp GCCACCACTACCCTTCACTGTGCCTTCAAATCCCCTTaGGGCTCTAGGCAAATCTTAACAAAACTGACTAGA +
Preference number: 3 (lower is better)
Translates to: ATTTLHCAFKSP*GSRQILTKLTR
Trigger: TCTAGTCAGTTTTGTTAAGATTTGCCTAGAGCCTCAAGGGGATTTGAAGGCACAGTGAAGGGTAGTGGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp ATTAACCAGGCAAGCTACCTTTTGGAGAATGCTGCCTaGCTCGCAGCTACCTCTGTAAGGTTAACACTCAAA +
Preference number: 3 (lower is better)
Translates to: INQASYLLENAA*LAATSVRLTLK
Trigger: TTTGAGTGTTAACCTTACAGAGGTAGCTGCGAGGCAGGCAGCATTCTCCAAAAGGTAGCTTGCCTGGTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp CTGTCAGGAGTGACAAAGTGCCTCTGGTCTGGAGAATaGAAATCATTTAATGCCACCACTACCCTTCACTGT +
Preference number: 3 (lower is better)
Translates to: LSGVTKCLWSGE*KSFNATTTLHC
Trigger: ACAGTGAAGGGTAGTGGTGGCATTAAATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp CAAGAGATTCCAACCAGAAGTCACGGACTGTGGTCTTaGTGGGCACATCCCTTTGACATTGATATTTGGACT +
Preference number: 3 (lower is better)
Translates to: QEIPTRSHGLWS*WAHPFDIDIWT
Trigger: AGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGTGACTTCTGGTTGGAATCTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR-3UTR CAA 90 bp CTTCCTGACTATAATGTAACTCTAAAGGCTCTTGTCAAACCAGTTCTCAAAAGCCAGGCAAGCTACCTTTaGGAGAATGCTGCCTGCCTC +
Preference number: 3 (lower is better)
Translates to: LPDYNVTLKALVKPVLKSQASYL*ENAACL
Trigger: GAGGCAGGCAGCATTCTCCAAAAGGTAGCTTGCCTG...GCTTTTGAGAACTGGTTTGACAAGAGCCTTTAGAGTTACATTATAGTCAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp ACGACCGCTGTAAGAAGAGGCTCAGTATATAGCTGGTaGTTGCAAAAACAAGAGAAGCCACTAACCACAGAT +
Preference number: 3 (lower is better)
Translates to: TTAVRRGSVYSW*LQKQEKPLTTD
Trigger: ATCTGTGGTTAGTGGCTTCTCTTGTTTTTGCAATCACCAGCTATATACTGAGCCTCTTCTTACAGCGGTCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp ATGAGCATGCTGGCGATAAAATATCACTGTCAGGAGTaGCAAAGTGCCTCTGGTCTGGAGAATGCAAATCAT +
Preference number: 3 (lower is better)
Translates to: MSMLAIKYHCQE*QSASGLENANH
Trigger: ATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAGTGATATTTTATCGCCAGCATGCTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp TGTGCAGGAGTTTATTATAGTCAGAGGCTTGGCTTCTaGGGTATACACTCTCATGCATTTCAGCAGCACATC +
Preference number: 3 (lower is better)
Translates to: CAGVYYSQRLGF*GIHSHAFQQHI
Trigger: GATGTGCTGCTGAAATGCATGAGAGTGTATACCTCAGAAGCCAAGCCTCTGACTATAATAAACTCCTGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp GCTGGCGATAAAATATCACTGTCAGGAGTGACAAAGTaGCTCTGGTCTGGAGAATGCAAATCATTTAATGCC +
Preference number: 3 (lower is better)
Translates to: AGDKISLSGVTK*LWSGECKSFNA
Trigger: GGCATTAAATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAGTGATATTTTATCGCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp TGGTCTTGGTGGGCACATCCCTTTGACATTGATATTTaGACTCAAAGTTCTTTGGAAACTGGTGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: WSWWAHPFDIDI*TQSSLETGDLR
Trigger: CCTCAGATCACCAGTTTCCAAAGAACTTTGAGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp CTAACTCAAGATCATTCTACACCTGTTCCCTTAGTCTaGTTTAGGCAGGAAAATAGCCTCACCAAGACACAG +
Preference number: 3 (lower is better)
Translates to: LTQDHSTPVPLV*FRQENSLTKTQ
Trigger: CTGTGTCTTGGTGAGGCTATTTTCCTGCCTAAACCAGACTAAGGGAACAGGTGTAGAATGATCTTGAGTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR GCA 72 bp TTCTCAAAAGCTTTATACTGTCTCAGATCTACTGGGTaGCTCAAATTGTTGGCACCAAACTGTTACAACCCC +
Preference number: 3 (lower is better)
Translates to: FSKALYCLRSTG*LKLLAPNCYNP
Trigger: GGGGTTGTAACAGTTTGGTGCCAACAATTTGAGGCACCCAGTAGATCTGAGACAGTATAAAGCTTTTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp CCAGTTCTCAAAAGCTTTATACTGTCTCAGATCTACTaGGTGCCTCAAATTGTTGGCACCAAACTGTTACAA +
Preference number: 3 (lower is better)
Translates to: PVLKSFILSQIY*VPQIVGTKLLQ
Trigger: TTGTAACAGTTTGGTGCCAACAATTTGAGGCACCCAGTAGATCTGAGACAGTATAAAGCTTTTGAGAACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CCA 72 bp GATAAAATATCACTGTCAGGAGTGACAAAGTGCCTCTaGTCTGGAGAATGCAAATCATTTAATGCCACCACT +
Preference number: 3 (lower is better)
Translates to: DKISLSGVTKCL*SGECKSFNATT
Trigger: AGTGGTGGCATTAAATGATTTGCATTCTCCAGACCAGAGGCACTTTGTCACTCCTGACAGTGATATTTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp GTTGGCACCAAACTGTTACAACCCCATTCTAGAAACTaGACTAAGCTGCTACTTAAACATGCTATATTAACC +
Preference number: 3 (lower is better)
Translates to: VGTKLLQPHSRN*TKLLLKHAILT
Trigger: GGTTAATATAGCATGTTTAAGTAGCAGCTTAGTTCAGTTTCTAGAATGGGGTTGTAACAGTTTGGTGCCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR TCA 72 bp ATATTTGGACTCAAAGTTCTTTGGAAACTGGTGATCTaGGGCTTTAGTTTTCTTAGAACAATACCTGGCTTA +
Preference number: 3 (lower is better)
Translates to: IFGLKVLWKLVI*GFSFLRTIPGL
Trigger: TAAGCCAGGTATTGTTCTAAGAAAACTAAAGCCTCAGATCACCAGTTTCCAAAGAACTTTGAGTCCAAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR TCA 90 bp CCTTCGAGCAGCACAAACAGGGTGCTTACGAGGCTGAGGTTCCAGTTCTCATCCAGTGGCTTCTTCTCCTaGGCCTCGGGCGGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: PSSSTNRVLTRLRFQFSSSGFFS*ASGGAG
Trigger: CCCTGCCCCGCCCGAGGCTCAGGAGAAGAAGCCACT...GGATGAGAACTGGAACCTCAGCCTCGTAAGCACCCTGTTTGTGCTGCTCGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR TCA 90 bp TCCAACCATGTGCCAGGCAATGATCTAGGTGCTGGGACATGCTGGACACTCTGGCTTCTCCTTTCTCAATaGTGCACGCATCACGCGCCT +
Preference number: 4 (lower is better)
Translates to: SNHVPGNDLGAGTCWTLWLLLSQ*CTHHAP
Trigger: AGGCGCGTGATGCGTGCATCATTGAGAAAGGAGAAG...CCAGAGTGTCCAGCATGTCCCAGCACCTAGATCATTGCCTGGCACATGGTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR CCA 90 bp AGAAACCAGCTGGATACTACTATGAAACTGGCCTGTGGCCTGGGTGTCTCTCAACTCATGCACTCCTTGTaGGCTTCAATGAGATGTCCA +
Preference number: 4 (lower is better)
Translates to: RNQLDTTMKLACGLGVSQLMHSL*ASMRCP
Trigger: TGGACATCTCATTGAAGCCCACAAGGAGTGCATGAG...TTGAGAGACACCCAGGCCACAGGCCAGTTTCATAGTAGTATCCAGCTGGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR CCA 90 bp TTATATGGATTTGAGCAGATTTCCCATGTTTCTTTTGACCCTTACAAGCAGGAACATCACGCGCCTTCTTaGTTTCCGGGCAGGCACAGC +
Preference number: 4 (lower is better)
Translates to: LYGFEQISHVSFDPYKQEHHAPS*FPGRHS
Trigger: GCTGTGCCTGCCCGGAAACCAAGAAGGCGCGTGATG...TTCCTGCTTGTAAGGGTCAAAAGAAACATGGGAAATCTGCTCAAATCCATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 72 bp ACGGACTGTGGTCTTGGTGGGCACATCCCTTTGACATaGATATTTGGACTCAAAGTTCTTTGGAAACTGGTG +
Preference number: 4 (lower is better)
Translates to: TDCGLGGHIPLT*IFGLKVLWKLV
Trigger: CACCAGTTTCCAAAGAACTTTGAGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 72 bp GAAGTCACGGACTGTGGTCTTGGTGGGCACATCCCTTaGACATTGATATTTGGACTCAAAGTTCTTTGGAAA +
Preference number: 4 (lower is better)
Translates to: EVTDCGLGGHIP*TLIFGLKVLWK
Trigger: TTTCCAAAGAACTTTGAGTCCAAATATCAATGTCAAAGGGATGTGCCCACCAAGACCACAGTCCGTGACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 72 bp TCATTATGGCCAATTCAAGTGCTTAATAGTCATACATaGCTAGTGGCTACCATACTGGAGAATGTGGCCACG +
Preference number: 4 (lower is better)
Translates to: SLWPIQVLNSHT*LVATILENVAT
Trigger: CGTGGCCACATTCTCCAGTATGGTAGCCACTAGCAATGTATGACTATTAAGCACTTGAATTGGCCATAATGA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
3UTR CAA 72 bp TTTTATATGGATTTGAGCAGATTTCCCATGTTTCTTTaGACCCTTACAAGCAGGAAGAGCCACTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: FYMDLSRFPMFL*TLTSRKSHSLP
Trigger: AGGAAGTGAGTGGCTCTTCCTGCTTGTAAGGGTCAAAAGAAACATGGGAAATCTGCTCAAATCCATATAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR GCA 90 bp AATGTAACTCTAAAGGCTCTTGTCAAACCAGTTCTCAAAAGCTTTATACTGTCTTATCTTAAATCCCAGTaGCCTCATGCACTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: NVTLKALVKPVLKSFILSYLKSQ*PHALLV
Trigger: CACAAGGAGTGCATGAGGGCACTGGGATTTAAGATA...AGACAGTATAAAGCTTTTGAGAACTGGTTTGACAAGAGCCTTTAGAGTTACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2
CDS-3UTR CAA 90 bp CCTTCGAGCAGCACAAACAGGGTGCTTACGAGGCTGAGGTTCCAGTTCTCATCCGCCCTCATGCACTCCTaGTGGGCTTCAATGAGATGT +
Preference number: 5 (lower is better)
Translates to: PSSSTNRVLTRLRFQFSSALMHS*WASMRC
Trigger: ACATCTCATTGAAGCCCACAAGGAGTGCATGAGGGC...GGATGAGAACTGGAACCTCAGCCTCGTAAGCACCCTGTTTGTGCTGCTCGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120495.2