Pregenerated sensors for COX14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023020Ensembl transcript IDs: ENSMUST00000023761.4
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTGAAATCCCAGCAATCACAAGGT | + |
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Preference number: 1 (lower is better) Translates to: PRIWRDDGSVVKSTD*SSRGPELKSQQSQG Trigger: ACCTTGTGATTGCTGGGATTTCAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR GCA 90 bp | GAGGGAGTCAGATCTTTTAGGACTGGATTACAGATGGTTCATTATTaGCAGTGGGTGCTGGGAAATGAACCTGGGTCCTCTGCCAGAGCT | + |
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Preference number: 1 (lower is better) Translates to: EGVRSFRTGLQMVHY*QWVLGNEPGSSARA Trigger: AGCTCTGGCAGAGGACCCAGGTTCATTTCCCAGCACCCACTGGCAATAATGAACCATCTGTAATCCAGTCCTAAAAGATCTGACTCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 90 bp | GTCAGATCTTTTAGGACTGGATTACAGATGGTTCATTATTGCCAGTaGGTGCTGGGAAATGAACCTGGGTCCTCTGCCAGAGCTCTCATG | + |
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Preference number: 1 (lower is better) Translates to: VRSFRTGLQMVHYCQ*VLGNEPGSSARALM Trigger: CATGAGAGCTCTGGCAGAGGACCCAGGTTCATTTCCCAGCACCCACTGGCAATAATGAACCATCTGTAATCCAGTCCTAAAAGATCTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR GCA 90 bp | GGCCTGCACAAAGCTCTGTGGTCTTCTCTGACCGAAAAATTTAGGCAAATGCACCCATGGCTGCTGGCCTaGTGCCACGCTTCCCACCAC | + |
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Preference number: 2 (lower is better) Translates to: GLHKALWSSLTEKFRQMHPWLLA*CHASHH Trigger: GTGGTGGGAAGCGTGGCAGCAGGCCAGCAGCCATGG...GTGCATTTGCCTAAATTTTTCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | GTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGCCCATGATAGCCACGTGGGTGCTGGGAAATaGACCTGGGTCCTCTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: VFPACVSAPCAYSAHDSHVGAGK*TWVLCQ Trigger: CTGGCAGAGGACCCAGGTTCATTTCCCAGCACCCAC...GTGGCTATCATGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CAA 90 bp | GGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTaGAAATCCCAGCAATCACAAGGTGGCTCACAACCATCCGTCATG | + |
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Preference number: 2 (lower is better) Translates to: GSVVKSTDCSSRGPE*KSQQSQGGSQPSVM Trigger: CATGACGGATGGTTGTGAGCCACCTTGTGATTGCTGGGATTTCAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CCA 90 bp | GACCTGATGCCCTCTTCTGGGGTGTCTGAAGACAGCTACAATGTACTTAACTGTTTCCCACCACGGTGGTaGTCATGGACCCCTCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: DLMPSSGVSEDSYNVLNCFPPRW*SWTPLR Trigger: TCTCAGAGGGGTCCATGACCACCACCGTGGTGGGAA...ACAGTTAAGTACATTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | GTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGCCCATGATAGCCACTTAGCCCAGCAGGTTTaGAAGGCATGGGGGCCTAGT | + |
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Preference number: 2 (lower is better) Translates to: VFPACVSAPCAYSAHDSHLAQQV*KAWGPS Trigger: ACTAGGCCCCCATGCCTTTCAAACCTGCTGGGCTAA...GTGGCTATCATGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | GGCCTGCACAAAGCTCTGTGGTCTTCTCTGACCGAAAAATTTAGGCAAATGCACGAAGAACTGGGAGTGTaGCCTTACCAGAGGAGGTGT | + |
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Preference number: 2 (lower is better) Translates to: GLHKALWSSLTEKFRQMHEELGV*PYQRRC Trigger: ACACCTCCTCTGGTAAGGTCACACTCCCAGTTCTTC...GTGCATTTGCCTAAATTTTTCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | GGCCTGCACAAAGCTCTGTGGTCTTCTCTGACCGAAAAATTTAGGCAAATGCACAGAGGCAAGAGGATCTaGTCTCTCTTAGTTCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: GLHKALWSSLTEKFRQMHRGKRI*SLLVQA Trigger: AGCCTGAACTAAGAGAGATCAGATCCTCTTGCCTCT...GTGCATTTGCCTAAATTTTTCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR GCA 90 bp | GTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGCCCATGATAGCCACGCACAAAAATGCAACTaGAATCTCCACACCCGAGGA | + |
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Preference number: 2 (lower is better) Translates to: VFPACVSAPCAYSAHDSHAQKCN*NLHTRG Trigger: TCCTCGGGTGTGGAGATTGCAGTTGCATTTTTGTGC...GTGGCTATCATGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CCA 90 bp | ATAAGAATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCATTTAATCCCAACACTTaGGAGGCAGAGGCAAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: IRMVPLGSGEMMAQWLRAFNPNT*EAEARG Trigger: TCCTCTTGCCTCTGCCTCCCAAGTGTTGGGATTAAA...TGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CCA 90 bp | ATAAGAATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCACTGTTTGGGAAGAACTaGGAGTGTGACCTTACCAGA | + |
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Preference number: 2 (lower is better) Translates to: IRMVPLGSGEMMAQWLRALFGKN*ECDLTR Trigger: TCTGGTAAGGTCACACTCCCAGTTCTTCCCAAACAG...TGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CCA 90 bp | GTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGCCCATGATAGCCACGGGCATGTTTACATATaGCCTGCACAAAGCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: VFPACVSAPCAYSAHDSHGHVYI*PAQSSV Trigger: CACAGAGCTTTGTGCAGGCCATATGTAAACATGCCC...GTGGCTATCATGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | TTAAAGATTTATGTGTACGGGTGTTTTTCCTGCATGTGTATCTGCACCATGTGCATCCGTCATGAGACCTaGTGCCCTCTTCTGGGGTGT | + |
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Preference number: 2 (lower is better) Translates to: LKIYVYGCFSCMCICTMCIRHET*CPLLGC Trigger: ACACCCCAGAAGAGGGCATCAGGTCTCATGACGGAT...GCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAAATCTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | GTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGCCCATGATAGCCACGGCAGATTTTCTCCATaGTCCTACACCCTGATACTA | + |
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Preference number: 2 (lower is better) Translates to: VFPACVSAPCAYSAHDSHGRFSP*SYTLIL Trigger: TAGTATCAGGGTGTAGGATCATGGAGAAAATCTGCC...GTGGCTATCATGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR TCA 90 bp | TTAAAGATTTATGTGTACGGGTGTTTTTCCTGCATGTGTATCTGCACCATGTGCCCAGAGGTCCTGAGTTaGAATCCCAGCAATCACAAG | + |
|
Preference number: 2 (lower is better) Translates to: LKIYVYGCFSCMCICTMCPEVLS*NPSNHK Trigger: CTTGTGATTGCTGGGATTTCAACTCAGGACCTCTGG...GCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAAATCTTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR GCA 90 bp | AAGAATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCACTTATGCCCCAAATAAATaGTTCCGTGAGGTAACTTTT | + |
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Preference number: 2 (lower is better) Translates to: KNGPPRIWRDDGSVVKSTYAPNK*FREVTF Trigger: AAAAGTTACCTCACGGAAGCATTTATTTGGGGCATA...AGTGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CCA 90 bp | ATAAGAATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCAGATCCATTTACTCTCTaGGTACACAGAACCACTAAA | + |
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Preference number: 2 (lower is better) Translates to: IRMVPLGSGEMMAQWLRADPFTL*VHRTTK Trigger: TTTAGTGGTTCTGTGTACCCAGAGAGTAAATGGATC...TGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR GCA 90 bp | TTATGTGTACGGGTGTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGAAAAATTTAGGCAAATaGACTAATGCTGGGGCAGAT | + |
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Preference number: 2 (lower is better) Translates to: LCVRVFFLHVYLHHVHTVKNLGK*TNAGAD Trigger: ATCTGCCCCAGCATTAGTGCATTTGCCTAAATTTTT...CACTGTATGCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR GCA 72 bp | TTCTCCACTTCTCTAGGGCCATGGCTGCTGGCCTGCTaGCACGCTTCCCACCACGGTGGTGGTCATGGACCC | + |
|
Preference number: 3 (lower is better) Translates to: FSTSLGPWLLAC*HASHHGGGHGP Trigger: GGGTCCATGACCACCACCGTGGTGGGAAGCGTGGCAGCAGGCCAGCAGCCATGGCCCTAGAGAAGTGGAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | GGCCTGCTGCCACGCTTCCCACCACGGTGGTGGTCATaGACCCCTCTGAGACTATATGCCCCAAATAAATGC | + |
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Preference number: 3 (lower is better) Translates to: GLLPRFPPRWWS*TPLRLYAPNKC Trigger: GCATTTATTTGGGGCATATAGTCTCAGAGGGGTCCATGACCACCACCGTGGTGGGAAGCGTGGCAGCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | TGGATCAGATGTAAGTTCTCCACTTCTCTAGGGCCATaGCTGCTGGCCTGCTGCCACGCTTCCCACCACGGT | + |
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Preference number: 3 (lower is better) Translates to: WIRCKFSTSLGP*LLACCHASHHG Trigger: ACCGTGGTGGGAAGCGTGGCAGCAGGCCAGCAGCCATGGCCCTAGAGAAGTGGAGAACTTACATCTGATCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR TCA 72 bp | CCCAGCAATCACAAGGTGGCTCACAACCATCCGTCATaGGACCTGATGCCCTCTTCTGGGGTGTCTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: PSNHKVAHNHPS*DLMPSSGVSED Trigger: GTCTTCAGACACCCCAGAAGAGGGCATCAGGTCTCATGACGGATGGTTGTGAGCCACCTTGTGATTGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | ATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTaGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: MVPLGSGEMMAQ*LRALTALPEVL Trigger: CAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR TCA 72 bp | ATCACAAGGTGGCTCACAACCATCCGTCATGAGACCTaGTGCCCTCTTCTGGGGTGTCTGAAGACAGCTACA | + |
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Preference number: 3 (lower is better) Translates to: ITRWLTTIRHET*CPLLGCLKTAT Trigger: TGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGGTCTCATGACGGATGGTTGTGAGCCACCTTGTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR TCA 72 bp | ACAGATGGTTCATTATTGCCAGTGGGTGCTGGGAAATaGACCTGGGTCCTCTGCCAGAGCTCTCATGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: TDGSLLPVGAGK*TWVLCQSSHVL Trigger: AAGGACATGAGAGCTCTGGCAGAGGACCCAGGTTCATTTCCCAGCACCCACTGGCAATAATGAACCATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CAA 90 bp | TCCCAGCAATCACAAGGTGGCTCACAACCATCCGTCATGAGACCTGATGCCCTCCACATTCCCATTTACTaGATGGCCTCCATAAACTGT | + |
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Preference number: 3 (lower is better) Translates to: SQQSQGGSQPSVMRPDALHIPIY*MASINC Trigger: ACAGTTTATGGAGGCCATCAAGTAAATGGGAATGTG...GAGGGCATCAGGTCTCATGACGGATGGTTGTGAGCCACCTTGTGATTGCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR GCA 72 bp | TGGAGAGATGATGGCTCAGTGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTGAAATCCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: WRDDGSVVKSTD*SSRGPELKSQQ Trigger: TTGCTGGGATTTCAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCATCTCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | TGTGGTGGTTTGCATAAGAATGGTCCCCCTAGGATCTaGAGAGATGATGGCTCAGTGGTTAAGAGCACTGAC | + |
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Preference number: 3 (lower is better) Translates to: CGGLHKNGPPRI*RDDGSVVKSTD Trigger: GTCAGTGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTTATGCAAACCACCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR TCA 72 bp | TTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTaGAATCCCAGCAATCACAAGGTGGCTCACAACCAT | + |
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Preference number: 3 (lower is better) Translates to: LRALTALPEVLS*NPSNHKVAHNH Trigger: ATGGTTGTGAGCCACCTTGTGATTGCTGGGATTTCAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | TTTAGGACTGGATTACAGATGGTTCATTATTGCCAGTaGGTGCTGGGAAATGAACCTGGGTCCTCTGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: FRTGLQMVHYCQ*VLGNEPGSSAR Trigger: TCTGGCAGAGGACCCAGGTTCATTTCCCAGCACCCACTGGCAATAATGAACCATCTGTAATCCAGTCCTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | AAGATGCATCTCAGTAGTAGAGGGCATGTTTACATATaGCCTGCACAAAGCTCTGTGGTCTTCTCTGACCGA | + |
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Preference number: 3 (lower is better) Translates to: KMHLSSRGHVYI*PAQSSVVFSDR Trigger: TCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCCATATGTAAACATGCCCTCTACTACTGAGATGCATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR-3UTR CAA 90 bp | TTATGTGTACGGGTGTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGTTTCCAGTTAGCTCTTaGCCTTGTGCCTGTGGATCA | + |
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Preference number: 3 (lower is better) Translates to: LCVRVFFLHVYLHHVHTVFPVSS*PCACGS Trigger: TGATCCACAGGCACAAGGCAAAGAGCTAACTGGAAA...CACTGTATGCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR GCA 72 bp | ATAGAAACTCATAAAGATATATGGCAGGCACAAAAATaGAACTGCAATCTCCACACCCGAGGAGCGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: IETHKDIWQAQK*NCNLHTRGAEA Trigger: TGCCTCCGCTCCTCGGGTGTGGAGATTGCAGTTGCATTTTTGTGCCTGCCATATATCTTTATGAGTTTCTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | GAGGGCATGTTTACATATGGCCTGCACAAAGCTCTGTaGTCTTCTCTGACCGAAAAATTTAGGCAAATGCAC | + |
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Preference number: 3 (lower is better) Translates to: EGMFTYGLHKAL*SSLTEKFRQMH Trigger: GTGCATTTGCCTAAATTTTTCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCCATATGTAAACATGCCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | AAGAGGGAGTCAGATCTTTTAGGACTGGATTACAGATaGTTCATTATTGCCAGTGGGTGCTGGGAAATGAAC | + |
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Preference number: 3 (lower is better) Translates to: KRESDLLGLDYR*FIIASGCWEMN Trigger: GTTCATTTCCCAGCACCCACTGGCAATAATGAACCATCTGTAATCCAGTCCTAAAAGATCTGACTCCCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR GCA 72 bp | ATTCTTTTAAAGATTTATGTGTACGGGTGTTTTTCCTaGATGTGTATCTGCACCATGTGCATACAGTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: ILLKIYVYGCFS*MCICTMCIQCP Trigger: TGGGCACTGTATGCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAAATCTTTAAAAGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CCA 72 bp | AACTCAAAGCCACACCTCTATGATCCATTTACTCTCTaGGTACACAGAACCACTAAAACACAAACAAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: NSKPHLYDPFTL*VHRTTKTQTKQ Trigger: TTGCTTTGTTTGTGTTTTAGTGGTTCTGTGTACCCAGAGAGTAAATGGATCATAGAGGTGTGGCTTTGAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR GCA 90 bp | TCCCAGCAATCACAAGGTGGCTCACAACCATCCGTCATGAGACCTGATGCCCTCGGTCTTCTGCTCTTCTaGAGCCTGGCGCCTGGCACT | + |
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Preference number: 4 (lower is better) Translates to: SQQSQGGSQPSVMRPDALGLLLF*SLAPGT Trigger: AGTGCCAGGCGCCAGGCTGCAGAAGAGCAGAAGACC...GAGGGCATCAGGTCTCATGACGGATGGTTGTGAGCCACCTTGTGATTGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR CCA 90 bp | GGCCTAGTTCTTGCCAGGGTTGACATGCAGGAAAATCTTTTCCATTTCAGGCCGCTGCAGCCTGGCGCCTaGCACTGCGCAGCTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: GLVLARVDMQENLFHFRPLQPGA*HCAAGG Trigger: ACCTCCAGCTGCGCAGTGCCAGGCGCCAGGCTGCAG...CGGCCTGAAATGGAAAAGATTTTCCTGCATGTCAACCCTGGCAAGAACTAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR GCA 90 bp | GGCCTGCACAAAGCTCTGTGGTCTTCTCTGACCGAAAAATTTAGGCAAATGCACCCTGGCGCCTGGCACTaGGCAGCTGGAGGTAACGGT | + |
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Preference number: 4 (lower is better) Translates to: GLHKALWSSLTEKFRQMHPGAWH*AAGGNG Trigger: ACCGTTACCTCCAGCTGCGCAGTGCCAGGCGCCAGG...GTGCATTTGCCTAAATTTTTCGGTCAGAGAAGACCACAGAGCTTTGTGCAGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR GCA 90 bp | AAGAATGGTCCCCCTAGGATCTGGAGAGATGATGGCTCAGTGGTTAAGAGCACTACTCCTGAGGTCTTCTaGTCTTCTGCAGCCTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: KNGPPRIWRDDGSVVKSTTPEVF*SSAAWR Trigger: GCGCCAGGCTGCAGAAGAGCAGAAGACCTCAGGAGT...AGTGCTCTTAACCACTGAGCCATCATCTCTCCAGATCCTAGGGGGACCATTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR CCA 90 bp | TTATGTGTACGGGTGTTTTTCCTGCATGTGTATCTGCACCATGTGCATACAGTGTGCTCTTCTGCAGCCTaGCGCCTGGCACTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LCVRVFFLHVYLHHVHTVCSSAA*RLALRS Trigger: GCTGCGCAGTGCCAGGCGCCAGGCTGCAGAAGAGCA...CACTGTATGCACATGGTGCAGATACACATGCAGGAAAAACACCCGTACACATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS-3UTR TCA 90 bp | GGCCTAGTTCTTGCCAGGGTTGACATGCAGGAAAATCTTTTCCATTTCAGGCCGAACCCCCATACACAGTaGGGAGCATCATCGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GLVLARVDMQENLFHFRPNPHTQ*GASSRQ Trigger: CTGCCTCGATGATGCTCCTCACTGTGTATGGGGGTT...CGGCCTGAAATGGAAAAGATTTTCCTGCATGTCAACCCTGGCAAGAACTAGGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CAA 72 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTaGAAATCCCAGCAATCACAAGGTGGCTCACAACCA | + |
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Preference number: 4 (lower is better) Translates to: VKSTDCSSRGPE*KSQQSQGGSQP Trigger: TGGTTGTGAGCCACCTTGTGATTGCTGGGATTTCAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| 3UTR CAA 72 bp | ATGAAAACTAAGGTCCAGAAACCCAAGTGTGGTGGTTaGCATAAGAATGGTCCCCCTAGGATCTGGAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: MKTKVQKPKCGG*HKNGPPRIWRD Trigger: ATCTCTCCAGATCCTAGGGGGACCATTCTTATGCAAACCACCACACTTGGGTTTCTGGACCTTAGTTTTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS GCA 90 bp | GGACTCCTGAGGTCTTCTGCTCTTCTGCAGCCTGGCGCCTGGCACTaGGCAGCTGGAGGTAACGGTAGGCTCGTACACTGCAGAGGTAAC | + |
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Preference number: 5 (lower is better) Translates to: GLLRSSALLQPGAWH*AAGGNGRLVHCRGN Trigger: GTTACCTCTGCAGTGTACGAGCCTACCGTTACCTCCAGCTGCGCAGTGCCAGGCGCCAGGCTGCAGAAGAGCAGAAGACCTCAGGAGTCC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS TCA 90 bp | GGTAACGGTAGGCTCGTACACTGCAGAGGTAACCCCCATACACAGTaGGGAGCATCATCGAGGCAGAGAAGGTCTTGTAGCCGATATCGG | + |
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Preference number: 5 (lower is better) Translates to: GNGRLVHCRGNPHTQ*GASSRQRRSCSRYR Trigger: CCGATATCGGCTACAAGACCTTCTCTGCCTCGATGATGCTCCTCACTGTGTATGGGGGTTACCTCTGCAGTGTACGAGCCTACCGTTACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS GCA 72 bp | AGGTCTTCTGCTCTTCTGCAGCCTGGCGCCTGGCACTaGGCAGCTGGAGGTAACGGTAGGCTCGTACACTGC | + |
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Preference number: 6 (lower is better) Translates to: RSSALLQPGAWH*AAGGNGRLVHC Trigger: GCAGTGTACGAGCCTACCGTTACCTCCAGCTGCGCAGTGCCAGGCGCCAGGCTGCAGAAGAGCAGAAGACCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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| CDS TCA 72 bp | AGGCTCGTACACTGCAGAGGTAACCCCCATACACAGTaGGGAGCATCATCGAGGCAGAGAAGGTCTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: RLVHCRGNPHTQ*GASSRQRRSCS Trigger: GCTACAAGACCTTCTCTGCCTCGATGATGCTCCTCACTGTGTATGGGGGTTACCTCTGCAGTGTACGAGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023761.4 |
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