Pregenerated sensors for COX11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020544Ensembl transcript IDs: ENSMUST00000020851.15, ENSMUST00000099960.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTCATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCCCACAGACTGAGTTTTaGACTTGTTCTTTCAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: FIFYYLKQSCVCFLPLSTPQTEF*TCSFSL Trigger: AAGACTGAAAGAACAAGTTCAAAACTCAGTCTGTGG...GGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| 3UTR-3UTR TCA 90 bp | TTCATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCCTTAAGTGGGATAAATaGAGGTGCAAAGAAAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: FIFYYLKQSCVCFLPLSTLKWDK*RCKERK Trigger: CTTTCTTTCTTTGCACCTTCATTTATCCCACTTAAG...GGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR TCA 90 bp | GCAGCATCTTTTCACCACAGACTGAGTTTTGAACTTGTTCTTTCAGTCTTAAGTCACCACAGTCCGCCCTaGCCACCCGGGCTGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: AASFHHRLSFELVLSVLSHHSPP*PPGLPP Trigger: TGGAGGCAGCCCGGGTGGTCAGGGCGGACTGTGGTG...ACTTAAGACTGAAAGAACAAGTTCAAAACTCAGTCTGTGGTGAAAAGATGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR GCA 90 bp | CATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCCTGACCACCCGGGCTaGCTCCAGCCCCGGCCACAC | + |
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Preference number: 4 (lower is better) Translates to: HILLLKTELCLFPTLKHHPDHPG*LQPRPH Trigger: GTGTGGCCGGGGCTGGAGGCAGCCCGGGTGGTCAGG...ATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR TCA 90 bp | CACAGGATAGCAGCATCTTTTCACCACAGACTGAGTTTTGAACTTGTTCTTTCAGTTCTCGATCTGGTCTaGGGAGTGCCCGGCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: HRIAASFHHRLSFELVLSVLDLV*GVPGHC Trigger: GCAGTGGCCGGGCACTCCTCAGACCAGATCGAGAAC...TGAAAGAACAAGTTCAAAACTCAGTCTGTGGTGAAAAGATGCTGCTATCCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR TCA 90 bp | TATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCACAGGAGTGCCCGGCCACTGCTaGTCCTCCAAGTCCAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: YYLKQSCVCFLPLSTITGVPGHC*SSKSSS Trigger: ACTACTGGACTTGGAGGATCAGCAGTGGCCGGGCAC...TCCTGTGATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR GCA 90 bp | TATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCACAGGAATCTGGTCTGAGGAGTaGCCGGCCACTGCTGATCCT | + |
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Preference number: 4 (lower is better) Translates to: YYLKQSCVCFLPLSTITGIWSEE*PATADP Trigger: AGGATCAGCAGTGGCCGGGCACTCCTCAGACCAGAT...TCCTGTGATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CCA 90 bp | AATAGTCACACTTGGGCAGTCATATATTCTTCAGGCTTGGAATATGAACAATATTCCTCCTGCGCGCGCTaGAAAGGGTTGCTGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: NSHTWAVIYSSGLEYEQYSSCAR*KGLLLL Trigger: GAGGAGCAGCAACCCTTTCCAGCGCGCGCAGGAGGA...ATATTGTTCATATTCCAAGCCTGAAGAATATATGACTGCCCAAGTGTGACTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR GCA 90 bp | AATAGTCACACTTGGGCAGTCATATATTCTTCAGGCTTGGAATATGAACAATATCCTAAGCACCAGCTCTaGGTTCACCACAGTCCGCCC | + |
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Preference number: 4 (lower is better) Translates to: NSHTWAVIYSSGLEYEQYPKHQL*VHHSPP Trigger: GGGCGGACTGTGGTGAACGCAGAGCTGGTGCTTAGG...ATATTGTTCATATTCCAAGCCTGAAGAATATATGACTGCCCAAGTGTGACTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CCA 90 bp | TTCATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCCAGTGCAGTCTCTCCTaGTACCACATAGATCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FIFYYLKQSCVCFLPLSTQCSLS*YHIDLC Trigger: ACAGAGATCTATGTGGTACCAGGAGAGACTGCACTG...GGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR GCA 90 bp | CATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCTTAGCTTTATAAAATaGCAGTGCAGTCTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HILLLKTELCLFPTLKHHLSFIK*QCSLSW Trigger: CCAGGAGAGACTGCACTGGCATTTTATAAAGCTAAG...ATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR GCA 90 bp | TTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCACAGGATACATTCTTGGATCTTCTaGAAATTCAGGATCAATGTA | + |
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Preference number: 4 (lower is better) Translates to: LLKTELCLFPTLKHHHRIHSWIF*KFRINV Trigger: TACATTGATCCTGAATTTGCAGAAGATCCAAGAATG...TATCCTGTGATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CCA 90 bp | AATAGTCACACTTGGGCAGTCATATATTCTTCAGGCTTGGAATATGAACAATATGACATTCACCATTCTTaGATCTTCTGCAAATTCAGG | + |
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Preference number: 4 (lower is better) Translates to: NSHTWAVIYSSGLEYEQYDIHHS*IFCKFR Trigger: CCTGAATTTGCAGAAGATCCAAGAATGGTGAATGTC...ATATTGTTCATATTCCAAGCCTGAAGAATATATGACTGCCCAAGTGTGACTATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| 3UTR CAA 72 bp | AATATTCATATTCTATTACTTAAAACAGAGCTGTGTTaGTTTCCTACCCTTAAGCACCATCACAGGATAGCA | + |
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Preference number: 4 (lower is better) Translates to: NIHILLLKTELC*FPTLKHHHRIA Trigger: TGCTATCCTGTGATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATGAATATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CCA 90 bp | AATAGTCACACTTGGGCAGTCATATATTCTTCAGGCTTGGAATATGAACAATATATCTACTTCTTCTTGTaGATTAAGCCTTTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NSHTWAVIYSSGLEYEQYIYFFL*IKPLFF Trigger: GAAGAACAAAGGCTTAATCCACAAGAAGAAGTAGAT...ATATTGTTCATATTCCAAGCCTGAAGAATATATGACTGCCCAAGTGTGACTATT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS GCA 90 bp | TGCGCGCGCTGGAAAGGGTTGCTGCTCCTCGGCCGCCGTGGCGGCTaGGTCGCGGGCCCCCGGACCCCGCACGGGCGCTTCCATGTCCCG | + |
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Preference number: 5 (lower is better) Translates to: CARWKGLLLLGRRGG*VAGPRTPHGRFHVP Trigger: CGGGACATGGAAGCGCCCGTGCGGGGTCCGGGGGCCCGCGACGCAGCCGCCACGGCGGCCGAGGAGCAGCAACCCTTTCCAGCGCGCGCA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CAA 90 bp | CATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATTTAATGACCCGGTCCTaGACAGGCACCATGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: HILLLKTELCLFPTLKHHLMTRS*TGTMFS Trigger: CGAGAACATGGTGCCTGTCAAGGACCGGGTCATTAA...ATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS-3UTR CAA 90 bp | CATATTCTATTACTTAAAACAGAGCTGTGTTTGTTTCCTACCCTTAAGCACCATCACATAGATCTCTGTTaGCTGAGGTCTGAAGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: HILLLKTELCLFPTLKHHHIDLC*LRSEVP Trigger: TGGAACTTCAGACCTCAGCAAACAGAGATCTATGTG...ATGGTGCTTAAGGGTAGGAAACAAACACAGCTCTGTTTTAAGTAATAGAATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS GCA 72 bp | TGGAAAGGGTTGCTGCTCCTCGGCCGCCGTGGCGGCTaGGTCGCGGGCCCCCGGACCCCGCACGGGCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: WKGLLLLGRRGG*VAGPRTPHGRF Trigger: GAAGCGCCCGTGCGGGGTCCGGGGGCCCGCGACGCAGCCGCCACGGCGGCCGAGGAGCAGCAACCCTTTCCA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS GCA 72 bp | AGCACCGTCTTGTTCCGCCGCCGCCACTCGTCCTCCTaGGCGCGCTGGAAAGGGTTGCTGCTCCTCGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: STVLFRRRHSSS*ARWKGLLLLGR Trigger: GCGGCCGAGGAGCAGCAACCCTTTCCAGCGCGCGCAGGAGGACGAGTGGCGGCGGCGGAACAAGACGGTGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS GCA 72 bp | TCTGCGTTCACCACAGTCCGCCCTGACCACCCGGGCTaGCTCCAGCCCCGGCCACACGAAGCCACCAACCTC | + |
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Preference number: 6 (lower is better) Translates to: SAFTTVRPDHPG*LQPRPHEATNL Trigger: GAGGTTGGTGGCTTCGTGTGGCCGGGGCTGGAGGCAGCCCGGGTGGTCAGGGCGGACTGTGGTGAACGCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020851.15 |
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| CDS CCA 72 bp | AATGTAGAAAAACACTGGCATATCTACTTCTTCTTGTaGATTAAGCCTTTGTTCTTCAAAACAGAAGCACTG | + |
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Preference number: 6 (lower is better) Translates to: NVEKHWHIYFFL*IKPLFFKTEAL Trigger: CAGTGCTTCTGTTTTGAAGAACAAAGGCTTAATCCACAAGAAGAAGTAGATATGCCAGTGTTTTTCTACATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020851.15 ENSMUST00000099960.3 |
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