Pregenerated sensors for COTL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031827Ensembl transcript IDs: ENSMUST00000034285.14, ENSMUST00000168698.2, ENSMUST00000211873.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGGCCACGGTGACGGCAGGGGTAAATGCCAGGTCCAGGGCCAGTaGCAGAGAGGCTTCTGGGATCAGATGGTATGCATGACCCTGGCA | + |
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Preference number: 1 (lower is better) Translates to: AGHGDGRGKCQVQGQ*QRGFWDQMVCMTLA Trigger: TGCCAGGGTCATGCATACCATCTGATCCCAGAAGCCTCTCTGTCACTGGCCCTGGACCTGGCATTTACCCCTGCCGTCACCGTGGCCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR GCA 90 bp | TTGCTGCCTTCCAGGTGCCCTGAGGCCTATGCCAGCCTCCCTGTTTaGAGGGGACCTTTCCATCCTTGTCACCCTGGAGGCCCTGAGGTT | + |
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Preference number: 1 (lower is better) Translates to: LLPSRCPEAYASLPV*RGPFHPCHPGGPEV Trigger: AACCTCAGGGCCTCCAGGGTGACAAGGATGGAAAGGTCCCCTGCAAACAGGGAGGCTGGCATAGGCCTCAGGGCACCTGGAAGGCAGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR CCA 90 bp | GCCAAGCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTaGAATTTGCAGACTAAGATTCCAACCGTTGCTGCCTTCCAGGTG | + |
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Preference number: 1 (lower is better) Translates to: AKPASAVFKSKQSHL*NLQTKIPTVAAFQV Trigger: CACCTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGCTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCCAGGTGCCCTGAGGCCTATGCCAGCCTCCCTGTTTGCAGGGGACCTTTCCGGCGGAGCAGGCAGATaGCTCTGGGCTGTGGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LPGALRPMPASLFAGDLSGGAGR*LWAVGL Trigger: CAGCCCCACAGCCCAGAGCCATCTGCCTGCTCCGCC...GGAAAGGTCCCCTGCAAACAGGGAGGCTGGCATAGGCCTCAGGGCACCTGGAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | GCACCTGACCAGGCCTCAGCAACTCAAGGCCAGGGTAGCTTAGACCAGGCAGGCAGGGAAGGGGAGGGTTaGACACACTGGTGGCGCTGG | + |
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Preference number: 2 (lower is better) Translates to: APDQASATQGQGSLDQAGREGEG*THWWRW Trigger: CCAGCGCCACCAGTGTGTCCAACCCTCCCCTTCCCT...GCCTGCCTGGTCTAAGCTACCCTGGCCTTGAGTTGCTGAGGCCTGGTCAGGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | CGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGGGACGGCGGAGCAGGCAGATaGCTCTGGGCTGTGGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RSTPDLNLLLPSSVYQRDGGAGR*LWAVGL Trigger: CAGCCCCACAGCCCAGAGCCATCTGCCTGCTCCGCC...GTCCCTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | GCCACTCTGAACAGGACAGGGGTGAGGCCTGGGGCCACATCTATGGGCTCTGAGGGTTGGACACACTGGTaGCGCTGGTGCCTCTCATGG | + |
|
Preference number: 2 (lower is better) Translates to: ATLNRTGVRPGATSMGSEGWTHW*RWCLSW Trigger: CCATGAGAGGCACCAGCGCCACCAGTGTGTCCAACC...CTCAGAGCCCATAGATGTGGCCCCAGGCCTCACCCCTGTCCTGTTCAGAGTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGAGATGGTCCTCACAGCCCAGCCCGGTGCAGCATCCTTCCCCAGAGTAATACTGGGGCCACATCTATaGGCTCTGAGGAGCATGCGC | + |
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Preference number: 2 (lower is better) Translates to: PEMVLTAQPGAASFPRVILGPHL*ALRSMR Trigger: GCGCATGCTCCTCAGAGCCCATAGATGTGGCCCCAG...TATTACTCTGGGGAAGGATGCTGCACCGGGCTGGGCTGTGAGGACCATCTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCTGTTACTGCCAAGCAGTGTCTACCAGAGGGACAGCTCAAGGCCACTCTGAGGGAAGGGGAGGGTTaGACACACTGGTGGCGCTGG | + |
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Preference number: 2 (lower is better) Translates to: KPVTAKQCLPEGQLKATLREGEG*THWWRW Trigger: CCAGCGCCACCAGTGTGTCCAACCCTCCCCTTCCCT...CAGAGTGGCCTTGAGCTGTCCCTCTGGTAGACACTGCTTGGCAGTAACAGGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR TCA 90 bp | GCACCTGACCAGGCCTCAGCAACTCAAGGCCAGGGTAGCTTAGACCAGGCAGGCATCAGATGGTATGCATaGCCCTGGCACCAAAATGAC | + |
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Preference number: 2 (lower is better) Translates to: APDQASATQGQGSLDQAGIRWYA*PWHQND Trigger: GTCATTTTGGTGCCAGGGTCATGCATACCATCTGAT...GCCTGCCTGGTCTAAGCTACCCTGGCCTTGAGTTGCTGAGGCCTGGTCAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCACACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACACACACTGGTGGCGCTaGTGCCTCTCATGGCTTCTC | + |
|
Preference number: 2 (lower is better) Translates to: LHTRSTPDLNLLLPSSVYTHWWR*CLSWLL Trigger: GAGAAGCCATGAGAGGCACCAGCGCCACCAGTGTGT...GTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTGTGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCCAAGCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTCAGGTCCAGGGCCAGTaGCAGAGAGGCTTCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: EPSPPQLSSKANKAIFGIQVQGQ*QRGFWD Trigger: ATCCCAGAAGCCTCTCTGTCACTGGCCCTGGACCTG...AATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGCTTGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACCAGGTCCAGGGCCAGTaGCAGAGAGGCTTCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: ARLSCLQKQTKPSLEFADQVQGQ*QRGFWD Trigger: ATCCCAGAAGCCTCTCTGTCACTGGCCCTGGACCTG...GTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR GCA 90 bp | TCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGGGAGAAGGCTGTAAGGTGTaGACAGCTCCTGGTATTGGT | + |
|
Preference number: 2 (lower is better) Translates to: SVHARPKPVTAKQCLPEGEGCKV*TAPGIG Trigger: ACCAATACCAGGAGCTGTGCACACCTTACAGCCTTC...TCCCTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 ENSMUST00000211873.2 |
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| 3UTR CAA 90 bp | GCAAACAAAGCCATCTTTGGAATTTGCAGACTAAGATTCCAACCGTaGCTGCCTTCCAGGTGCCCTGAGGCCTATGCCAGCCTCCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: ANKAIFGICRLRFQP*LPSRCPEAYASLPV Trigger: AACAGGGAGGCTGGCATAGGCCTCAGGGCACCTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACTAAGAGCTGGGGTGGCACCTaGCCAGGCCTCAGCAACTCA | + |
|
Preference number: 2 (lower is better) Translates to: ASAVFKSKQSHLWNLQTKSWGGT*PGLSNS Trigger: TGAGTTGCTGAGGCCTGGTCAGGTGCCACCCCAGCT...CTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTGCAGACTAAGATTCCAACCGTTGCTGCCTTCCAGGTGCCCTGAGGCCTATGAAGGCTGTAAGGTGTaGACAGCTCCTGGTATTGGT | + |
|
Preference number: 2 (lower is better) Translates to: ICRLRFQPLLPSRCPEAYEGCKV*TAPGIG Trigger: ACCAATACCAGGAGCTGTGCACACCTTACAGCCTTC...ATAGGCCTCAGGGCACCTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAGCCATCTTTGGAATTTGCAGACTAAGATTCCAACCGTTGCTGCCTTCCAGACACACTGGTGGCGCTaGTGCCTCTCATGGCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: QSHLWNLQTKIPTVAAFQTHWWR*CLSWLL Trigger: GAGAAGCCATGAGAGGCACCAGCGCCACCAGTGTGT...CTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCAAATTCCAAAGATGGCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCGAGGAGCCAAGCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGGATCAGATGGTATaGATGACCCTGGCACCAAAA | + |
|
Preference number: 2 (lower is better) Translates to: SRGAKPASAVFKSKQSHLWDQMV*MTLAPK Trigger: TTTTGGTGCCAGGGTCATGCATACCATCTGATCCCA...AAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGCTTGGCTCCTCGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR GCA 90 bp | GCCAAGCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGTGGGATCAGATGGTATaGATGACCCTGGCACCAAAA | + |
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Preference number: 2 (lower is better) Translates to: AKPASAVFKSKQSHLWNLWDQMV*MTLAPK Trigger: TTTTGGTGCCAGGGTCATGCATACCATCTGATCCCA...CAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGCTTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CAA 90 bp | GATGGTCCTCACAGCCCAGCCCGGTGCAGCATCCTTCCCCAGAGTAATAAGAGCGAGGGAAGGGGAGGGTaGGACACACTGGTGGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: DGPHSPARCSILPQSNKSEGRGG*DTLVAL Trigger: CAGCGCCACCAGTGTGTCCAACCCTCCCCTTCCCTC...GCTCTTATTACTCTGGGGAAGGATGCTGCACCGGGCTGGGCTGTGAGGACCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR GCA 72 bp | TGCGCGCGCATGGGAGCTCATGAAGGCTGTAAGGTGTaGACAGCTCCTGGTATTGGTGGCCGGCGTAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: CARMGAHEGCKV*TAPGIGGRRRA Trigger: AGCCCTACGCCGGCCACCAATACCAGGAGCTGTGCACACCTTACAGCCTTCATGAGCTCCCATGCGCGCGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 ENSMUST00000211873.2 |
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| 3UTR GCA 72 bp | TCCAGGTGCCCTGAGGCCTATGCCAGCCTCCCTGTTTaGAGGGGACCTTTCCATCCTTGTCACCCTGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: SRCPEAYASLPV*RGPFHPCHPGG Trigger: GCCTCCAGGGTGACAAGGATGGAAAGGTCCCCTGCAAACAGGGAGGCTGGCATAGGCCTCAGGGCACCTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR CCA 72 bp | GTAGGGCTAGCAGGAAACAGCCAGGTCAAGCTGGGGTaGCACCTGACCAGGCCTCAGCAACTCAAGGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: VGLAGNSQVKLG*HLTRPQQLKAR Trigger: CCTGGCCTTGAGTTGCTGAGGCCTGGTCAGGTGCCACCCCAGCTTGACCTGGCTGTTTCCTGCTAGCCCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 ENSMUST00000211873.2 |
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| 3UTR TCA 72 bp | GGTGACGGCAGGGGTAAATGCCAGGTCCAGGGCCAGTaGCAGAGAGGCTTCTGGGATCAGATGGTATGCATG | + |
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Preference number: 3 (lower is better) Translates to: GDGRGKCQVQGQ*QRGFWDQMVCM Trigger: CATGCATACCATCTGATCCCAGAAGCCTCTCTGTCACTGGCCCTGGACCTGGCATTTACCCCTGCCGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR GCA 72 bp | TGCAGACTAAGATTCCAACCGTTGCTGCCTTCCAGGTaGCCTGAGGCCTATGCCAGCCTCCCTGTTTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: CRLRFQPLLPSR*PEAYASLPVCR Trigger: CCTGCAAACAGGGAGGCTGGCATAGGCCTCAGGGCACCTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR CCA 72 bp | CACATTTACTTCTGTAAACTGTCGGAATGCCAGAGATaGTCCTCACAGCCCAGCCCGGTGCAGCATCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: HIYFCKLSECQR*SSQPSPVQHPS Trigger: GGAAGGATGCTGCACCGGGCTGGGCTGTGAGGACCATCTCTGGCATTCCGACAGTTTACAGAAGTAAATGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACTAAGAGAGGGAAGGGGAGGGTaGGACACACTGGTGGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: PQLSSKANKAIFGICRLREGRGG*DTLVAL Trigger: CAGCGCCACCAGTGTGTCCAACCCTCCCCTTCCCTC...TCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR CCA 72 bp | GCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTaGAATTTGCAGACTAAGATTCCAACCGTTGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: ASAVFKSKQSHL*NLQTKIPTVAA Trigger: GGCAGCAACGGTTGGAATCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACTAAGAAGATTTAAGGCAAATTaGTCACTTCACACTCGGTCC | + |
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Preference number: 3 (lower is better) Translates to: PQLSSKANKAIFGICRLRRFKAN*SLHTRS Trigger: GGACCGAGTGTGAAGTGACAAATTTGCCTTAAATCT...TCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR GCA 90 bp | GGCCAGGGTAGCTTAGACCAGGCAGGCCACGGTGACGGCAGGGGTAAATGCCAGGAAGTGCTGGTAATCTaGTCCCTGATCGCCGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: GQGSLDQAGHGDGRGKCQEVLVI*SLIAGD Trigger: GTCCCCGGCGATCAGGGAGCAGATTACCAGCACTTC...CTGGCATTTACCCCTGCCGTCACCGTGGCCTGCCTGGTCTAAGCTACCCTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR TCA 90 bp | CACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGCAGGTCCAGGGCCAGTaGCAGAGAGGCTTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: HSVHARPKPVTAKQCLPEQVQGQ*QRGFWD Trigger: ATCCCAGAAGCCTCTCTGTCACTGGCCCTGGACCTG...CTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211873.2 |
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| CDS-3UTR GCA 90 bp | CTTCACACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACGAAGTGCTGGTAATCTaGTCCCTGATCGCCGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: LHTRSTPDLNLLLPSSVYEVLVI*SLIAGD Trigger: GTCCCCGGCGATCAGGGAGCAGATTACCAGCACTTC...GTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTGTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 ENSMUST00000211873.2 |
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| CDS-3UTR TCA 90 bp | CATGAAGGCTGTAAGGTGTGCACAGCTCCTGGTATTGGTGGCCGGCGTAGGGCTATCAGATGGTATGCATaGCCCTGGCACCAAAATGAC | + |
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Preference number: 4 (lower is better) Translates to: HEGCKVCTAPGIGGRRRAIRWYA*PWHQND Trigger: GTCATTTTGGTGCCAGGGTCATGCATACCATCTGAT...AGCCCTACGCCGGCCACCAATACCAGGAGCTGTGCACACCTTACAGCCTTCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211873.2 |
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| CDS-3UTR GCA 90 bp | CACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGTGGGATCAGATGGTATaGATGACCCTGGCACCAAAA | + |
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Preference number: 4 (lower is better) Translates to: HSVHARPKPVTAKQCLPEWDQMV*MTLAPK Trigger: TTTTGGTGCCAGGGTCATGCATACCATCTGATCCCA...CTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211873.2 |
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| CDS-3UTR GCA 90 bp | CCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACTAAGAGAAGTGCTGGTAATCTaGTCCCTGATCGCCGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: PQLSSKANKAIFGICRLREVLVI*SLIAGD Trigger: GTCCCCGGCGATCAGGGAGCAGATTACCAGCACTTC...TCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR GCA 90 bp | GAGAGGCTTCTGGGATCAGATGGTATGCATGACCCTGGCACCAAAATGACTTCTGATCACAAATTCCTTTaGAAAATTCTGGACCACCTC | + |
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Preference number: 4 (lower is better) Translates to: ERLLGSDGMHDPGTKMTSDHKFL*KILDHL Trigger: GAGGTGGTCCAGAATTTTGCAAAGGAATTTGTGATC...AGAAGTCATTTTGGTGCCAGGGTCATGCATACCATCTGATCCCAGAAGCCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR GCA 90 bp | GAGCCAAGCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTGATCACAAATTCCTTTaGAAAATTCTGGACCACCTC | + |
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Preference number: 4 (lower is better) Translates to: EPSPPQLSSKANKAIFGIDHKFL*KILDHL Trigger: GAGGTGGTCCAGAATTTTGCAAAGGAATTTGTGATC...AATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGCTTGGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| 3UTR CAA 72 bp | GCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTaGCAGACTAAGATTCCAACCGTTGCTGCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: AVFKSKQSHLWN*QTKIPTVAAFQ Trigger: CTGGAAGGCAGCAACGGTTGGAATCTTAGTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS GCA 90 bp | ACCACCTCCTTCACCAGCGTCTTGTCGGTCCCCGTCTTGGCACGCTaGAGTCCACTCACGTCCTCCCCGATCCATGTGATGAGGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: TTSFTSVLSVPVLAR*SPLTSSPIHVMRAN Trigger: GTTTGCCCTCATCACATGGATCGGGGAGGACGTGAGTGGACTGCAGCGTGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGAGGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR CAA 90 bp | CAGGGTAGCTTAGACCAGGCAGGCCACGGTGACGGCAGGGGTAAATGCCAGGTCGCAAACTTGGATCTTTaGCTCATGGCGTCGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: QGSLDQAGHGDGRGKCQVANLDL*LMASPV Trigger: CACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGC...GACCTGGCATTTACCCCTGCCGTCACCGTGGCCTGCCTGGTCTAAGCTACCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR CAA 90 bp | CACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGTCCTTCACCAGCGTCTaGTCGGTCCCCGTCTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: HSVHARPKPVTAKQCLPESFTSV*SVPVLA Trigger: TGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGA...CTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR CAA 90 bp | GATGGTCCTCACAGCCCAGCCCGGTGCAGCATCCTTCCCCAGAGTAATAAGAGCGTGATGAGGGCAAACTaGGATCTTTTGCTCATGGCG | + |
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Preference number: 5 (lower is better) Translates to: DGPHSPARCSILPQSNKSVMRAN*DLLLMA Trigger: CGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCAC...GCTCTTATTACTCTGGGGAAGGATGCTGCACCGGGCTGGGCTGTGAGGACCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR CAA 90 bp | CACTCGGTCCACGCCAGACCTAAACCTGTTACTGCCAAGCAGTGTCTACCAGAGGTGATGAGGGCAAACTaGGATCTTTTGCTCATGGCG | + |
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Preference number: 5 (lower is better) Translates to: HSVHARPKPVTAKQCLPEVMRAN*DLLLMA Trigger: CGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCAC...CTCTGGTAGACACTGCTTGGCAGTAACAGGTTTAGGTCTGGCGTGGACCGAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS-3UTR CAA 90 bp | GCCCGCCTCAGCTGTCTTCAAAAGCAAACAAAGCCATCTTTGGAATTTGCAGACGCAAACTTGGATCTTTaGCTCATGGCGTCGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: ARLSCLQKQTKPSLEFADANLDL*LMASPV Trigger: CACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGC...GTCTGCAAATTCCAAAGATGGCTTTGTTTGCTTTTGAAGACAGCTGAGGCGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CCA 72 bp | CCACCTCCTTCACCAGCGTCTTGTCGGTCCCCGTCTTaGCACGCTGCAGTCCACTCACGTCCTCCCCGATCC | + |
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Preference number: 6 (lower is better) Translates to: PPPSPASCRSPS*HAAVHSRPPRS Trigger: GGATCGGGGAGGACGTGAGTGGACTGCAGCGTGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGAGGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 72 bp | ACCACCTCCTTCACCAGCGTCTTGTCGGTCCCCGTCTaGGCACGCTGCAGTCCACTCACGTCCTCCCCGATC | + |
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Preference number: 6 (lower is better) Translates to: TTSFTSVLSVPV*ARCSPLTSSPI Trigger: GATCGGGGAGGACGTGAGTGGACTGCAGCGTGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGAGGTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 90 bp | AAATTCTGGACCACCTCCTTCACCAGCGTCTTGTCGGTCCCCGTCTaGGCACGCTGCAGTCCACTCACGTCCTCCCCGATCCATGTGATG | + |
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Preference number: 6 (lower is better) Translates to: KFWTTSFTSVLSVPV*ARCSPLTSSPIHVM Trigger: CATCACATGGATCGGGGAGGACGTGAGTGGACTGCAGCGTGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGAGGTGGTCCAGAATTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 90 bp | CTCACGTCCTCCCCGATCCATGTGATGAGGGCAAACTTGGATCTTTaGCTCATGGCGTCGCCGGTGGTGAAGCGCACAAAGGCGAACAGC | + |
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Preference number: 6 (lower is better) Translates to: LTSSPIHVMRANLDL*LMASPVVKRTKANS Trigger: GCTGTTCGCCTTTGTGCGCTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCACATGGATCGGGGAGGACGTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS TCA 72 bp | CGGGTTTGGATCTTTTGCTCATGGCGTCGCCGGTGGTaGAGCGCACAAAGGCGAACAGCCGGACATCATCTG | + |
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Preference number: 6 (lower is better) Translates to: RVWIFCSWRRRW*SAQRRTAGHHL Trigger: CAGATGATGTCCGGCTGTTCGCCTTTGTGCGCTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAACCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211873.2 |
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| CDS CAA 90 bp | TGCAGTCCACTCACGTCCTCCCCGATCCATGTGATGAGGGCAAACTaGGATCTTTTGCTCATGGCGTCGCCGGTGGTGAAGCGCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: CSPLTSSPIHVMRAN*DLLLMASPVVKRTK Trigger: CTTTGTGCGCTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCACATGGATCGGGGAGGACGTGAGTGGACTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 72 bp | CTCACGTCCTCCCCGATCCATGTGATGAGGGCAAACTaGGATCTTTTGCTCATGGCGTCGCCGGTGGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LTSSPIHVMRAN*DLLLMASPVVK Trigger: CTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCACATGGATCGGGGAGGACGTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 72 bp | TTTGCAAAATTCTGGACCACCTCCTTCACCAGCGTCTaGTCGGTCCCCGTCTTGGCACGCTGCAGTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: FAKFWTTSFTSV*SVPVLARCSPL Trigger: GAGTGGACTGCAGCGTGCCAAGACGGGGACCGACAAGACGCTGGTGAAGGAGGTGGTCCAGAATTTTGCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS TCA 72 bp | CAAACTTGGATCTTTTGCTCATGGCGTCGCCGGTGGTaGAGCGCACAAAGGCGAACAGCCGGACATCATCTG | + |
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Preference number: 6 (lower is better) Translates to: QTWIFCSWRRRW*SAQRRTAGHHL Trigger: CAGATGATGTCCGGCTGTTCGCCTTTGTGCGCTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAGTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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| CDS CAA 72 bp | TCCCCGATCCATGTGATGAGGGCAAACTTGGATCTTTaGCTCATGGCGTCGCCGGTGGTGAAGCGCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: SPIHVMRANLDL*LMASPVVKRTK Trigger: CTTTGTGCGCTTCACCACCGGCGACGCCATGAGCAAAAGATCCAAGTTTGCCCTCATCACATGGATCGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034285.14 ENSMUST00000168698.2 |
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