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Pregenerated sensors for CORT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028971

Ensembl transcript IDs: ENSMUST00000030815.3

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGCTCCGACGGGGGTGCTaGAGCTGGCTTGGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: FRSRWHLTGWPGCYAQGGLRRGC*SWLGKP
Trigger: GGGCTTCCCAAGCCAGCTCCAGCACCCCCGTCGGAG...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CCA 90 bp TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGCGCTCCTCCCCTCGGTaGCTTCCTGCACACTGTCCT +
Preference number: 4 (lower is better)
Translates to: FRSRWHLTGWPGCYAQGGRSSPR*LPAHCP
Trigger: AGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCG...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CCA 90 bp TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGGTGCTGGAGCTGGCTTaGGAAGCCCACTCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: FRSRWHLTGWPGCYAQGGVLELA*EAHSCH
Trigger: GTGGCACGAGTGGGCTTCCCAAGCCAGCTCCAGCAC...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CCA 90 bp TATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCC +
Preference number: 4 (lower is better)
Translates to: YSGLVGISQGGQGAMPRVSCTLS*PVGPLS
Trigger: GGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGA...CACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CCA 90 bp GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGCCTTTCCTGGCTCTTaGACAGCCCGGGGGTACCCC +
Preference number: 4 (lower is better)
Translates to: VFIQVSLASHRVARVLCPAFPGS*TARGYP
Trigger: GGGGTACCCCCGGGCTGTCCAAGAGCCAGGAAAGGC...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR GCA 90 bp GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCACCCTCGGTGGCTTCCTaGACACTGTCCTGGCCAGTA +
Preference number: 4 (lower is better)
Translates to: VFIQVSLASHRVARVLCPPSVAS*TLSWPV
Trigger: TACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGG...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS CCA 90 bp GTCAGAAGGCCGCTCCTCCCCTCGGTGGCTTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCCAGGGGAAGGGCGGAGGCTGCGACC +
Preference number: 5 (lower is better)
Translates to: VRRPLLPSVASCTLS*PVGPLSRGRAEAAT
Trigger: GGTCGCAGCCTCCGCCCTTCCCCTGGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCGGCCTTCTGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CAA 90 bp GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGCCTTTCCTGGCTCTaGGACAGCCCGGGGGTACCC +
Preference number: 5 (lower is better)
Translates to: VFIQVSLASHRVARVLCPGLSWL*DSPGVP
Trigger: GGGTACCCCCGGGCTGTCCAAGAGCCAGGAAAGGCC...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CAA 90 bp TCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGCTGGAGCTGGCTaGGGAAGCCCACTCGTGCCA +
Preference number: 5 (lower is better)
Translates to: SLFRSRWHLTGWPGCYAQGAGAG*GSPLVP
Trigger: TGGCACGAGTGGGCTTCCCAAGCCAGCTCCAGCACC...CTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS-3UTR CAA 90 bp TATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGTTCCAGAAGAAGTTCTaGCAGGGCTTTTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: YSGLVGISQGGQGAMPRVFQKKF*QGFLSR
Trigger: CCTGGATAAAAAGCCCTGCAAGAACTTCTTCTGGAA...CACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3
CDS CCA 72 bp CCGCTCCTCCCCTCGGTGGCTTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCCAGGGGAAGGGCGGAG +
Preference number: 6 (lower is better)
Translates to: PLLPSVASCTLS*PVGPLSRGRAE
Trigger: CTCCGCCCTTCCCCTGGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030815.3