Pregenerated sensors for CORT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028971Ensembl transcript IDs: ENSMUST00000030815.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGCTCCGACGGGGGTGCTaGAGCTGGCTTGGGAAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FRSRWHLTGWPGCYAQGGLRRGC*SWLGKP Trigger: GGGCTTCCCAAGCCAGCTCCAGCACCCCCGTCGGAG...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CCA 90 bp | TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGCGCTCCTCCCCTCGGTaGCTTCCTGCACACTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FRSRWHLTGWPGCYAQGGRSSPR*LPAHCP Trigger: AGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCG...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CCA 90 bp | TTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGGGGTGCTGGAGCTGGCTTaGGAAGCCCACTCGTGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: FRSRWHLTGWPGCYAQGGVLELA*EAHSCH Trigger: GTGGCACGAGTGGGCTTCCCAAGCCAGCTCCAGCAC...CCCACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CCA 90 bp | TATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YSGLVGISQGGQGAMPRVSCTLS*PVGPLS Trigger: GGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGA...CACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CCA 90 bp | GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGCCTTTCCTGGCTCTTaGACAGCCCGGGGGTACCCC | + |
|
Preference number: 4 (lower is better) Translates to: VFIQVSLASHRVARVLCPAFPGS*TARGYP Trigger: GGGGTACCCCCGGGCTGTCCAAGAGCCAGGAAAGGC...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR GCA 90 bp | GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCACCCTCGGTGGCTTCCTaGACACTGTCCTGGCCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: VFIQVSLASHRVARVLCPPSVAS*TLSWPV Trigger: TACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGG...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS CCA 90 bp | GTCAGAAGGCCGCTCCTCCCCTCGGTGGCTTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCCAGGGGAAGGGCGGAGGCTGCGACC | + |
|
Preference number: 5 (lower is better) Translates to: VRRPLLPSVASCTLS*PVGPLSRGRAEAAT Trigger: GGTCGCAGCCTCCGCCCTTCCCCTGGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCGGCCTTCTGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CAA 90 bp | GTCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGCCTTTCCTGGCTCTaGGACAGCCCGGGGGTACCC | + |
|
Preference number: 5 (lower is better) Translates to: VFIQVSLASHRVARVLCPGLSWL*DSPGVP Trigger: GGGTACCCCCGGGCTGTCCAAGAGCCAGGAAAGGCC...TGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CAA 90 bp | TCTTTATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGCTGGAGCTGGCTaGGGAAGCCCACTCGTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SLFRSRWHLTGWPGCYAQGAGAG*GSPLVP Trigger: TGGCACGAGTGGGCTTCCCAAGCCAGCTCCAGCACC...CTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATAAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS-3UTR CAA 90 bp | TATTCAGGTCTCGTTGGCATCTCACAGGGTGGCCAGGGTGCTATGCCCAGGGTGTTCCAGAAGAAGTTCTaGCAGGGCTTTTTATCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: YSGLVGISQGGQGAMPRVFQKKF*QGFLSR Trigger: CCTGGATAAAAAGCCCTGCAAGAACTTCTTCTGGAA...CACCCTGGGCATAGCACCCTGGCCACCCTGTGAGATGCCAACGAGACCTGAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||
| CDS CCA 72 bp | CCGCTCCTCCCCTCGGTGGCTTCCTGCACACTGTCCTaGCCAGTAGGGCCACTCTCCAGGGGAAGGGCGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PLLPSVASCTLS*PVGPLSRGRAE Trigger: CTCCGCCCTTCCCCTGGAGAGTGGCCCTACTGGCCAGGACAGTGTGCAGGAAGCCACCGAGGGGAGGAGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030815.3 |
||