Pregenerated sensors for COQ10B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025981Ensembl transcript IDs: ENSMUST00000027125.7, ENSMUST00000087617.11
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGAAACAACTTCCCAACAACACTGAATCATCTACTGCTACCCATAAGAACAATGCCTGCAAATGTACATaGTACTTAGAGTCACACTTG | + |
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Preference number: 2 (lower is better) Translates to: GKQLPNNTESSTATHKNNACKCT*YLESHL Trigger: CAAGTGTGACTCTAAGTATCATGTACATTTGCAGGC...ATTGTTCTTATGGGTAGCAGTAGATGATTCAGTGTTGTTGGGAAGTTGTTTCCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| 3UTR-3UTR TCA 90 bp | GCAGATAAAATTTTGACACACAATCAGCACAAAGCACCTGGAAGGAAGTTTCAAACTTCCCAACAACACTaGATCATCTACTGCTACCCA | + |
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Preference number: 2 (lower is better) Translates to: ADKILTHNQHKAPGRKFQTSQQH*IIYCYP Trigger: TGGGTAGCAGTAGATGATTCAGTGTTGTTGGGAAGT...TTGAAACTTCCTTCCAGGTGCTTTGTGCTGATTGTGTGTCAAAATTTTATCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| 3UTR CCA 72 bp | ATATGCACAATAAATAGAAAATGCCTTGTGTGGTGCTaGAGACAAATTAACTACTTACTTATCTGTTGCCTA | + |
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Preference number: 3 (lower is better) Translates to: ICTINRKCLVWC*RQINYLLICCL Trigger: TAGGCAACAGATAAGTAAGTAGTTAATTTGTCTCCAGCACCACACAAGGCATTTTCTATTTATTGTGCATAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR TCA 90 bp | ACACACAATCAGCACAAAGCACCTGGAAGGAAGTTTCAAATGTCTAGAAAAGTAAGGCAGCTAAGTGTCTaGCGTCGCGCGCAGACCCCC | + |
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Preference number: 4 (lower is better) Translates to: THNQHKAPGRKFQMSRKVRQLSV*RRAQTP Trigger: GGGGGTCTGCGCGCGACGTCAGACACTTAGCTGCCT...TACTTTTCTAGACATTTGAAACTTCCTTCCAGGTGCTTTGTGCTGATTGTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR TCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGAACAGAGTAGCGAGCTaGGAGTGCAGAAGGGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQENRVAS*ECRRER Trigger: CCGCTCCCTTCTGCACTCTCAGCTCGCTACTCTGTT...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR TCA 90 bp | GGGAAACAACTTCCCAACAACACTGAATCATCTACTGCTACCCATAAGAACAATGTGGCGCAGAGATTCTaGAGAAAGTTCTCGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: GKQLPNNTESSTATHKNNVAQRF*RKFSHR Trigger: TCTGTGCGAGAACTTTCTTCAGAATCTCTGCGCCAC...ATTGTTCTTATGGGTAGCAGTAGATGATTCAGTGTTGTTGGGAAGTTGTTTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR TCA 90 bp | GAAATAATTCTATGTACAAGTGGGTCCATGTTCAATGTGCAAATTTTCAACAGCAACAGAGTAGCGAGCTaGGAGTGCAGAAGGGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: EIILCTSGSMFNVQIFNSNRVAS*ECRRER Trigger: CCGCTCCCTTCTGCACTCTCAGCTCGCTACTCTGTT...GCTGTTGAAAATTTGCACATTGAACATGGACCCACTTGTACATAGAATTATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR TCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGATACATTTCTTGCATTaGGTACCTGACGTCGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQEIHFLH*VPDVAR Trigger: GCGCGCGACGTCAGGTACTCAATGCAAGAAATGTAT...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087617.11 |
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| CDS-3UTR CCA 90 bp | TGTTCATCTGTACACTCAAACGAGGAATGTGGTATCCTAGCAACAGTGATGACACAAGGTACAAGTTCTTaGATAGCCAGGAAGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: CSSVHSNEECGILATVMTQGTSS*IARKTW Trigger: CCAGGTCTTCCTGGCTATCCAAGAACTTGTACCTTG...TGTCATCACTGTTGCTAGGATACCACATTCCTCGTTTGAGTGTACAGATGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR GCA 90 bp | TGTTCATCTGTACACTCAAACGAGGAATGTGGTATCCTAGCAACAGTGATGACACCCATCAGTACAAGATaGCTTTACCAAGTGCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: CSSVHSNEECGILATVMTPISTR*LYQVRF Trigger: AAACCGCACTTGGTAAAGGCATCTTGTACTGATGGG...TGTCATCACTGTTGCTAGGATACCACATTCCTCGTTTGAGTGTACAGATGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR CCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGCAAGGTACAAGTTCTTaGATAGCCAGGAAGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQEQGTSS*IARKTW Trigger: CCAGGTCTTCCTGGCTATCCAAGAACTTGTACCTTG...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR GCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGCCCATCAGTACAAGATaGCTTTACCAAGTGCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQEPISTR*LYQVRF Trigger: AAACCGCACTTGGTAAAGGCATCTTGTACTGATGGG...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR CCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGAGGTATGTTTGTCTCTaGACCATACAGTTTACAGGC | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQERYVCL*TIQFTG Trigger: GCCTGTAAACTGTATGGTCCAGAGACAAACATACCT...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR TCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGTACCAAGGTTACTATTaGTGTGTATCTCTCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQEYQGYY*CVSLQN Trigger: GTTCTGGAGAGATACACATCAATAGTAACCTTGGTA...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR GCA 90 bp | ACAAGTGGGTCCATGTTCAATGTGCAAATTTTCAACAGCACGGGCTTAGAATCATCTTCTTTCAAAGGCTaGTACCATTTGTTTCACAAC | + |
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Preference number: 4 (lower is better) Translates to: TSGSMFNVQIFNSTGLESSSFKG*YHLFHN Trigger: GTTGTGAAACAAATGGTAGCAGCCTTTGAAAGAAGA...TGATTCTAAGCCCGTGCTGTTGAAAATTTGCACATTGAACATGGACCCACTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR GCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGTCTTCTTTCAAAGGCTaGTACCATTTGTTTCACAAC | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQESSFKG*YHLFHN Trigger: GTTGTGAAACAAATGGTAGCAGCCTTTGAAAGAAGA...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR CCA 90 bp | GGGAAACAACTTCCCAACAACACTGAATCATCTACTGCTACCCATAAGAACAATACCCAACTTCTAATCTaGTTTTACAGTATCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: GKQLPNNTESSTATHKNNTQLLI*FYSIQI Trigger: GATCTGGATACTGTAAAACCAGATTAGAAGTTGGGT...ATTGTTCTTATGGGTAGCAGTAGATGATTCAGTGTTGTTGGGAAGTTGTTTCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR CCA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGACCCAACTTCTAATCTaGTTTTACAGTATCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: TSQQMVKGLPRSEQTSQETQLLI*FYSIQI Trigger: GATCTGGATACTGTAAAACCAGATTAGAAGTTGGGT...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR CAA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGCCAAGGTACAAGTTCTaGGATAGCCAGGAAGACCTG | + |
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Preference number: 5 (lower is better) Translates to: TSQQMVKGLPRSEQTSQEPRYKF*DSQEDL Trigger: CAGGTCTTCCTGGCTATCCAAGAACTTGTACCTTGG...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR CAA 90 bp | ACAAGTGGGTCCATGTTCAATGTGCAAATTTTCAACAGCACGGGCTTAGAATCAATTCCCGAGGTATGTTaGTCTCTGGACCATACAGTT | + |
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Preference number: 5 (lower is better) Translates to: TSGSMFNVQIFNSTGLESIPEVC*SLDHTV Trigger: AACTGTATGGTCCAGAGACAAACATACCTCGGGAAT...TGATTCTAAGCCCGTGCTGTTGAAAATTTGCACATTGAACATGGACCCACTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR CAA 90 bp | ACTTCTCAACAGATGGTAAAAGGACTTCCTAGAAGTGAACAAACTAGCCAAGAGTTACCAAGGTTACTATaGATGTGTATCTCTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: TSQQMVKGLPRSEQTSQELPRLL*MCISPE Trigger: TTCTGGAGAGATACACATCAATAGTAACCTTGGTAA...CTCTTGGCTAGTTTGTTCACTTCTAGGAAGTCCTTTTACCATCTGTTGAGAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS-3UTR CAA 90 bp | GAAATAATTCTATGTACAAGTGGGTCCATGTTCAATGTGCAAATTTTCAACAGCCATACATTTCTTGCATaGAGTACCCTAGAATTCTTC | + |
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Preference number: 5 (lower is better) Translates to: EIILCTSGSMFNVQIFNSHTFLA*STLEFF Trigger: GAAGAATTCTAGGGTACTCAATGCAAGAAATGTATG...GCTGTTGAAAATTTGCACATTGAACATGGACCCACTTGTACATAGAATTATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS-3UTR CAA 90 bp | GAAATAATTCTATGTACAAGTGGGTCCATGTTCAATGTGCAAATTTTCAACAGCTTACCAAGGTTACTATaGATGTGTATCTCTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: EIILCTSGSMFNVQIFNSLPRLL*MCISPE Trigger: TTCTGGAGAGATACACATCAATAGTAACCTTGGTAA...GCTGTTGAAAATTTGCACATTGAACATGGACCCACTTGTACATAGAATTATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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| CDS GCA 72 bp | TTCCGTCACGGTGGTCGACTTCGGATGGCACCCCGATaGCACCCTCGCCAGGGCCCTCTGACTGGTCCGAGC | + |
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Preference number: 6 (lower is better) Translates to: FRHGGRLRMAPR*HPRQGPLTGPS Trigger: GCTCGGACCAGTCAGAGGGCCCTGGCGAGGGTGGCATCGGGGTGCCATCCGAAGTCGACCACCGTGACGGAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027125.7 ENSMUST00000087617.11 |
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| CDS TCA 72 bp | TTCTGTTTATCAGTACACCACAGGCAGCTAAGTGTCTaGCGTCGCGCGCAGACCCCCGCGCCGGGGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: FCLSVHHRQLSV*RRAQTPAPGLP Trigger: CGGAAGCCCCGGCGCGGGGGTCTGCGCGCGACGTCAGACACTTAGCTGCCTGTGGTGTACTGATAAACAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027125.7 |
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