Pregenerated sensors for COPZ2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018672Ensembl transcript IDs: ENSMUST00000018816.14, ENSMUST00000145633.2, ENSMUST00000147710.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTaGGAGAGGCCTGAGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAG | + |
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Preference number: 1 (lower is better) Translates to: FCVSESLAGDLRDQF*ERPEKAEWSLLRLE Trigger: CTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCCTCTCTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR CAA 90 bp | CAGGTTAGGATGCTGAGTAGGGGTGAGGGAGCTGGGGTCAAGCTTTaGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: QVRMLSRGEGAGVKL*RLRIPGRRPQGSVL Trigger: CAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTGACCCCAGCTCCCTCACCCCTACTCAGCATCCTAACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTCAAGCTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCCTTTGCTGGTTCCCATaGCCCCAAGGCCAGGTTAGG | + |
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Preference number: 2 (lower is better) Translates to: GSSFCVSESLAGDLRDQFLCWFP*PQGQVR Trigger: CCTAACCTGGCCTTGGGGCCATGGGAACCAGCAAAG...GAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGACCTCAGGGATCAGTTCTGAGAGAGGCCTGAGAAGGCAGAGTGGTCTCCCTGAGAAGGCAGAGTaGTCTCTCTTGCGTCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: QETSGISSERGLRRQSGLPEKAE*SLLRLE Trigger: CTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGG...GAGACCACTCTGCCTTCTCAGGCCTCTCTCAGAACTGATCCCTGAGGTCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGCTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTGAGACTTTCTGGATCACTTaGTGGGGGTCGCTCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: QAFASQNPWQETSGISSETFWIT*WGSLSR Trigger: TCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGT...CTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147710.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTGAGAGAGCTGGCAAAAGTTCTCTaGGGAAGGAGCCTTGATTCC | + |
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Preference number: 2 (lower is better) Translates to: LLRLRIPGRRPQGSVLRELAKVL*GRSLDS Trigger: GGAATCAAGGCTCCTTCCCCAGAGAACTTTTGCCAG...CTCTCTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR-3UTR TCA 90 bp | GGGAAAAATGTAAGTTTATTAAGGCCTAGGACTGAGGATGTCAGAGGTCCGAGGGTTCTGAGAGAGGCCTaGGAAGGCAGAGTGGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: GKNVSLLRPRTEDVRGPRVLREA*EGRVVS Trigger: AGAGACCACTCTGCCTTCTCAGGCCTCTCTCAGAAC...CCTCGGACCTCTGACATCCTCAGTCCTAGGCCTTAATAAACTTACATTTTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR GCA 72 bp | TCTGAGAGAGGCCTGAGAAGGCAGAGTGGTCTCTCTTaGGTCTTGAGATCTTGGGGCTTACGCGGGGACTGG | + |
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Preference number: 3 (lower is better) Translates to: SERGLRRQSGLS*VLRSWGLRGDW Trigger: CCAGTCCCCGCGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCCTCTCTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR CCA 72 bp | GGGAGCTGGGGTCAAGCTTTTGCGTCTCAGAATCCCTaGCAGGAGACCTCAGGGATCAGTTCTGAGAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: GSWGQAFASQNP*QETSGISSERG Trigger: GCCTCTCTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTGACCCCAGCTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR TCA 72 bp | TCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTaGGAGAGGCCTGAGAAGGCAGAGTGGTCTCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: SESLAGDLRDQF*ERPEKAEWSLL Trigger: CAAGAGAGACCACTCTGCCTTCTCAGGCCTCTCTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR CCA 72 bp | AGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAGATCTTaGGGCTTACGCGGGGACTGGCAAAAGTTCTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RRQSGLSCVLRS*GLRGDWQKFSG Trigger: CCCAGAGAACTTTTGCCAGTCCCCGCGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| 3UTR-3UTR CAA 90 bp | AAAAATGTAAGTTTATTAAGGCCTAGGACTGAGGATGTCAGAGGTCCGAGGGGACACTTTCTGGATCACTaGCTGGGGGTCGCTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: KNVSLLRPRTEDVRGPRGHFLDH*LGVALQ Trigger: CTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTG...TCCCCTCGGACCTCTGACATCCTCAGTCCTAGGCCTTAATAAACTTACATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000147710.2 |
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| CDS-3UTR TCA 90 bp | TTCCCATGGCCCCAAGGCCAGGTTAGGATGCTGAGTAGGGGTGAGGGAGCTGGGAGGCAAGCACAGACATaGGCATCAGCTCATTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: FPWPQGQVRMLSRGEGAGRQAQT*ASAHSR Trigger: CCGAGAATGAGCTGATGCTCATGTCTGTGCTTGCCT...CCCAGCTCCCTCACCCCTACTCAGCATCCTAACCTGGCCTTGGGGCCATGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| CDS-3UTR CCA 90 bp | TTCCCATGGCCCCAAGGCCAGGTTAGGATGCTGAGTAGGGGTGAGGGAGCTGGGTTCTGGATCACTTGCTaGGGGTCGCTCTCCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: FPWPQGQVRMLSRGEGAGFWITC*GSLSRI Trigger: GATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAA...CCCAGCTCCCTCACCCCTACTCAGCATCCTAACCTGGCCTTGGGGCCATGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| 3UTR CAA 72 bp | ATGCTGAGTAGGGGTGAGGGAGCTGGGGTCAAGCTTTaGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: MLSRGEGAGVKL*RLRIPGRRPQG Trigger: TCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTGACCCCAGCTCCCTCACCCCTACTCAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| CDS-3UTR TCA 90 bp | GGGTCAAGCTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCAGGCAAGCACAGACATaGGCATCAGCTCATTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GSSFCVSESLAGDLRDQFRQAQT*ASAHSR Trigger: CCGAGAATGAGCTGATGCTCATGTCTGTGCTTGCCT...GAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018816.14 ENSMUST00000147710.2 |
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| CDS-3UTR GCA 90 bp | AGGCCTGAGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAGATCTTGGGGCTTACGACTTTCTGGATCACTTaGTGGGGGTCGCTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RPEKAEWSLLRLEILGLTTFWIT*WGSLSR Trigger: TCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGT...CGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR TCA 90 bp | CAAGCTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTGAGAATCTGTTCCTTGGCTaGCTGAAGAACCTGGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QAFASQNPWQETSGISSENLFLG*LKNLGH Trigger: GTGGCCCAGGTTCTTCAGTCAGCCAAGGAACAGATT...CTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAGCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR GCA 90 bp | AGGCCTGAGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAGATCTTGGGGCTTACGTTCTCGAAAACCATCTaGTCCTTCACGGAGGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: RPEKAEWSLLRLEILGLTFSKTI*SFTEGN Trigger: ATTTCCCTCCGTGAAGGAGCAGATGGTTTTCGAGAA...CGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR CCA 90 bp | GGCCTGAGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAGATCTTGGGGCTTACGCTTCTTCCTTAAGATGTaGCTCAGAGAGTCAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: GLRRQSGLSCVLRSWGLRFFLKM*LRESNR Trigger: CCTGTTTGACTCTCTGAGCCACATCTTAAGGAAGAA...GCGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR CCA 90 bp | TCTCGAAAACCATCTGCTCCTTCACGGAGGGAAATGTGTCGTCATAATACAGTGGGAAAAACAGGACCTTaGCCAGCAGCCTTCGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: SRKPSAPSRREMCRHNTVGKTGP*PAAFAR Trigger: ACGGGCGAAGGCTGCTGGCCAAGGTCCTGTTTTTCC...CACTGTATTATGACGACACATTTCCCTCCGTGAAGGAGCAGATGGTTTTCGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145633.2 |
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| CDS-3UTR TCA 90 bp | CTTTTGCGTCTCAGAATCCCTGGCAGGAGACCTCAGGGATCAGTTCTGAGAGAGTGCGGCTGGTCTTGTTaGAGACATTTTTCTCGAAAA | + |
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Preference number: 4 (lower is better) Translates to: LLRLRIPGRRPQGSVLRECGWSC*RHFSRK Trigger: TTTTCGAGAAAAATGTCTTCAACAAGACCAGCCGCA...CTCTCTCAGAACTGATCCCTGAGGTCTCCTGCCAGGGATTCTGAGACGCAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR CAA 90 bp | AGGCCTGAGAAGGCAGAGTGGTCTCTCTTGCGTCTTGAGATCTTGGGGCTTACGTCGGTGCGGCTGGTCTaGTTGAAGACATTTTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: RPEKAEWSLLRLEILGLTSVRLV*LKTFFS Trigger: CGAGAAAAATGTCTTCAACAAGACCAGCCGCACCGA...CGTAAGCCCCAAGATCTCAAGACGCAAGAGAGACCACTCTGCCTTCTCAGGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR CAA 90 bp | GGGAAAAATGTAAGTTTATTAAGGCCTAGGACTGAGGATGTCAGAGGTCCGAGGCACTTTCTGGATCACTaGCTGGGGGTCGCTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: GKNVSLLRPRTEDVRGPRHFLDH*LGVALQ Trigger: CTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTG...CCTCGGACCTCTGACATCCTCAGTCCTAGGCCTTAATAAACTTACATTTTTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS-3UTR CAA 90 bp | GTTGAAGACATTTTTCTCGAAAACCATCTGCTCCTTCACGGAGGGAAATGTGTCAGGAAAAACAGGACCTaGGCCAGCAGCCTTCGCCCG | + |
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Preference number: 5 (lower is better) Translates to: VEDIFLENHLLLHGGKCVRKNRT*ASSLRP Trigger: CGGGCGAAGGCTGCTGGCCAAGGTCCTGTTTTTCCT...GACACATTTCCCTCCGTGAAGGAGCAGATGGTTTTCGAGAAAAATGTCTTCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000145633.2 |
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| CDS TCA 90 bp | TTAAGATGTGGCTCAGAGAGTCAAACAGGCAGGCAAGCACAGACATaGGCATCAGCTCATTCTCGGAGGAAGATCCCACCACATACAGGA | + |
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Preference number: 5 (lower is better) Translates to: LRCGSESQTGRQAQT*ASAHSRRKIPPHTG Trigger: TCCTGTATGTGGTGGGATCTTCCTCCGAGAATGAGCTGATGCTCATGTCTGTGCTTGCCTGCCTGTTTGACTCTCTGAGCCACATCTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS CCA 90 bp | AGGCCACTGTCATCAGTCCTAAAATTCACTTTCTGGATCACTTGCTaGGGGTCGCTCTCCAGAATCACACCTCCATCGACAGTTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: RPLSSVLKFTFWITC*GSLSRITPPSTVSS Trigger: GGATGAAACTGTCGATGGAGGTGTGATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGACAGTGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS CCA 90 bp | CTCTGTTCTGTTAGGCCACTGTCATCAGTCCTAAAATTCACTTTCTaGATCACTTGCTGGGGGTCGCTCTCCAGAATCACACCTCCATCG | + |
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Preference number: 5 (lower is better) Translates to: LCSVRPLSSVLKFTF*ITCWGSLSRITPPS Trigger: CGATGGAGGTGTGATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGACAGTGGCCTAACAGAACAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS GCA 90 bp | GTTAGGCCACTGTCATCAGTCCTAAAATTCACTTTCTGGATCACTTaGTGGGGGTCGCTCTCCAGAATCACACCTCCATCGACAGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: VRPLSSVLKFTFWIT*WGSLSRITPPSTVS Trigger: TGAAACTGTCGATGGAGGTGTGATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGACAGTGGCCTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS TCA 72 bp | GGCTCAGAGAGTCAAACAGGCAGGCAAGCACAGACATaGGCATCAGCTCATTCTCGGAGGAAGATCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: GSESQTGRQAQT*ASAHSRRKIPP Trigger: TGGTGGGATCTTCCTCCGAGAATGAGCTGATGCTCATGTCTGTGCTTGCCTGCCTGTTTGACTCTCTGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS CCA 72 bp | TCATCAGTCCTAAAATTCACTTTCTGGATCACTTGCTaGGGGTCGCTCTCCAGAATCACACCTCCATCGACA | + |
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Preference number: 6 (lower is better) Translates to: SSVLKFTFWITC*GSLSRITPPST Trigger: TGTCGATGGAGGTGTGATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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| CDS CAA 72 bp | ACTGTCATCAGTCCTAAAATTCACTTTCTGGATCACTaGCTGGGGGTCGCTCTCCAGAATCACACCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: TVISPKIHFLDH*LGVALQNHTSI Trigger: GATGGAGGTGTGATTCTGGAGAGCGACCCCCAGCAAGTGATCCAGAAAGTGAATTTTAGGACTGATGACAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018816.14 |
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