Pregenerated sensors for COPS9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073616Ensembl transcript IDs: ENSMUST00000097642.4, ENSMUST00000112999.8, ENSMUST00000148508.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCATCAAAAGCCCGGTGCTACCTCCAGCCCTTCTCTCAGAGCTTaGGGTCTTGAGGCCTGTCAGTGCGTAAGCCTCGCTCGGGCCTTC | + |
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Preference number: 1 (lower is better) Translates to: VHQKPGATSSPSLRA*GLEACQCVSLARAF Trigger: GAAGGCCCGAGCGAGGCTTACGCACTGACAGGCCTCAAGACCCCAAGCTCTGAGAGAAGGGCTGGAGGTAGCACCGGGCTTTTGATGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| 3UTR CCA 90 bp | CTTGAGGCCTGTCAGTGCGTAAGCCTCGCTCGGGCCTTCCCTCTCTaGAAGATTTATCAGGAGCCACAATCAACTGACAGCGAGCAAACC | + |
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Preference number: 1 (lower is better) Translates to: LEACQCVSLARAFPL*KIYQEPQSTDSEQT Trigger: GGTTTGCTCGCTGTCAGTTGATTGTGGCTCCTGATAAATCTTCCAGAGAGGGAAGGCCCGAGCGAGGCTTACGCACTGACAGGCCTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| 3UTR CCA 90 bp | AAACAAGGACACGGGCTGGCATTCCCAGAGACATCAGTACCCAGTTaGTTCAGACAGTTCCTCTATTGGTTGACAAGGTCTTCATTTCTA | + |
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Preference number: 1 (lower is better) Translates to: KQGHGLAFPETSVPS*FRQFLYWLTRSSFL Trigger: TAGAAATGAAGACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGATGTCTCTGGGAATGCCAGCCCGTGTCCTTGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR CCA 90 bp | CTGCGTGTTACAGTGTTCTTTATTAACTTAAACAAGGACACGGGCTaGCATTCCCAGAGACATCAGTACCCAGTTGGTTCAGACAGTTCC | + |
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Preference number: 1 (lower is better) Translates to: LRVTVFFINLNKDTG*HSQRHQYPVGSDSS Trigger: GGAACTGTCTGAACCAACTGGGTACTGATGTCTCTGGGAATGCCAGCCCGTGTCCTTGTTTAAGTTAATAAAGAACACTGTAACACGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTTCCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTAACAAGGACACGGGCTaGCATTCCCAGAGACATCAG | + |
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Preference number: 2 (lower is better) Translates to: QFLYWLTRSSFLVISTRCNKDTG*HSQRHQ Trigger: CTGATGTCTCTGGGAATGCCAGCCCGTGTCCTTGTT...ACACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTCTACAAGACAGTTCCTCTATTaGTTGACAAGGTCTTCATTT | + |
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Preference number: 2 (lower is better) Translates to: PLLVDKVFISSDINTVSTRQFLY*LTRSSF Trigger: AAATGAAGACCTTGTCAACCAATAGAGGAACTGTCT...TGTAGACACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR CCA 72 bp | AAGCCCGGTGCTACCTCCAGCCCTTCTCTCAGAGCTTaGGGTCTTGAGGCCTGTCAGTGCGTAAGCCTCGCT | + |
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Preference number: 3 (lower is better) Translates to: KPGATSSPSLRA*GLEACQCVSLA Trigger: AGCGAGGCTTACGCACTGACAGGCCTCAAGACCCCAAGCTCTGAGAGAAGGGCTGGAGGTAGCACCGGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| 3UTR CCA 72 bp | CACGGGCTGGCATTCCCAGAGACATCAGTACCCAGTTaGTTCAGACAGTTCCTCTATTGGTTGACAAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: HGLAFPETSVPS*FRQFLYWLTRS Trigger: AGACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGATGTCTCTGGGAATGCCAGCCCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR CCA 72 bp | ACAGTGTTCTTTATTAACTTAAACAAGGACACGGGCTaGCATTCCCAGAGACATCAGTACCCAGTTGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: TVFFINLNKDTG*HSQRHQYPVGS Trigger: TGAACCAACTGGGTACTGATGTCTCTGGGAATGCCAGCCCGTGTCCTTGTTTAAGTTAATAAAGAACACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| 3UTR CCA 72 bp | ACATCAGTACCCAGTTGGTTCAGACAGTTCCTCTATTaGTTGACAAGGTCTTCATTTCTAGTGATATCAACA | + |
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Preference number: 3 (lower is better) Translates to: TSVPSWFRQFLY*LTRSSFLVIST Trigger: TGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| CDS-3UTR TCA 90 bp | GGTCGTGTCCCGAGAGACTCCAGACACATCACAGACATGGAGCACATAGGACCGCGCTTCCCCAGCCTCTaGATCCCCAAAGGCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: GRVPRDSRHITDMEHIGPRFPSL*IPKGLG Trigger: GCCCAGGCCTTTGGGGATTCAGAGGCTGGGGAAGCG...CGGTCCTATGTGCTCCATGTCTGTGATGTGTCTGGAGTCTCTCGGGACACGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| CDS-3UTR GCA 90 bp | GGTCGTGTCCCGAGAGACTCCAGACACATCACAGACATGGAGCACATAGGACCGCTCTGTCTCTGCCTCTaGACACACCCCCGCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: GRVPRDSRHITDMEHIGPLCLCL*THPRHR Trigger: GCGGTGGCGGGGGTGTGTGCAGAGGCAGAGACAGAG...CGGTCCTATGTGCTCCATGTCTGTGATGTGTCTGGAGTCTCTCGGGACACGACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS-3UTR GCA 90 bp | AAGGTCTTCATTTCTAGTGATATCAACACGGTGTCTACAATCAGCTGGTCGTGTGCTCCCGCGCAGGTTTaGAGGCGTGCTCCCACCCCC | + |
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Preference number: 4 (lower is better) Translates to: KVFISSDINTVSTISWSCAPAQV*RRAPTP Trigger: GGGGGTGGGAGCACGCCTGCAAACCTGCGCGGGAGC...ACACGACCAGCTGATTGTAGACACCGTGTTGATATCACTAGAAATGAAGACCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| CDS-3UTR GCA 90 bp | AGGTCTTCATTTCTAGTGATATCAACACGGTGTCTACAATCAGCTGGTCGTGTCAACAGTCGCGGGCCCTaGGACTGTCCCCGGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RSSFLVISTRCLQSAGRVNSRGP*DCPRQL Trigger: GAGCTGCCGGGGACAGTCGCAGGGCCCGCGACTGTT...GACACGACCAGCTGATTGTAGACACCGTGTTGATATCACTAGAAATGAAGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| CDS-3UTR CCA 90 bp | ATCAGCTGGTCGTGTCCCGAGAGACTCCAGACACATCACAGACATGGAGCACATGAACGGCCTTCTCATTaGCTGCCAGGTCCATCAAAA | + |
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Preference number: 4 (lower is better) Translates to: ISWSCPERLQTHHRHGAHERPSH*LPGPSK Trigger: TTTTGATGGACCTGGCAGCCAATGAGAAGGCCGTTC...ATGTGCTCCATGTCTGTGATGTGTCTGGAGTCTCTCGGGACACGACCAGCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 |
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| CDS-3UTR CCA 90 bp | ATCAGCTGGTCGTGTCCCGAGAGACTCCAGACACATCACAGACATGGAGCACATTCACTCGAAGGCTGCTaGTTCAAGTTTCCCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: ISWSCPERLQTHHRHGAHSLEGC*FKFPWS Trigger: ACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGA...ATGTGCTCCATGTCTGTGATGTGTCTGGAGTCTCTCGGGACACGACCAGCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| 3UTR CAA 72 bp | ACACGGGCTGGCATTCCCAGAGACATCAGTACCCAGTaGGTTCAGACAGTTCCTCTATTGGTTGACAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: TRAGIPRDISTQ*VQTVPLLVDKV Trigger: GACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGATGTCTCTGGGAATGCCAGCCCGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| CDS-3UTR CCA 90 bp | CAGTTCCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTTGGCCTCCTCCTTCCTaGGCCCCATCACTCGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: QFLYWLTRSSFLVISTRCWPPPS*APSLEG Trigger: GCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCA...ACACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS-3UTR GCA 90 bp | GTTCCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTCTCCATCAAAAGCCCGGTaGTACCTCCAGCCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: VPLLVDKVFISSDINTVSPSKAR*YLQPHP Trigger: TGGATGAGGCTGGAGGTAGCACCGGGCTTTTGATGG...AGACACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097642.4 |
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| CDS-3UTR CCA 90 bp | CAGTTCCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTGAACGGCCTTCTCATTaGCTGCCAGGTCCATCAAAA | + |
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Preference number: 4 (lower is better) Translates to: QFLYWLTRSSFLVISTRCERPSH*LPGPSK Trigger: TTTTGATGGACCTGGCAGCCAATGAGAAGGCCGTTC...ACACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 |
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| 3UTR CAA 72 bp | TCAGTACCCAGTTGGTTCAGACAGTTCCTCTATTGGTaGACAAGGTCTTCATTTCTAGTGATATCAACACGG | + |
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Preference number: 4 (lower is better) Translates to: SVPSWFRQFLYW*TRSSFLVISTR Trigger: CCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| CDS-3UTR TCA 90 bp | ACAGTTCCTCTATTGGTTGACAAGGTCTTCATTTCTAGTGATATCAACACGGTGTCCTGTACTCTCTTTTaGATCTTCCTTCTGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TVPLLVDKVFISSDINTVSCTLF*IFLLPL Trigger: CAGAGGCAGAAGGAAGATTCAAAAGAGAGTACAGGA...CACCGTGTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| 3UTR CAA 72 bp | GACATCAGTACCCAGTTGGTTCAGACAGTTCCTCTATaGGTTGACAAGGTCTTCATTTCTAGTGATATCAAC | + |
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Preference number: 4 (lower is better) Translates to: DISTQLVQTVPL*VDKVFISSDIN Trigger: GTTGATATCACTAGAAATGAAGACCTTGTCAACCAATAGAGGAACTGTCTGAACCAACTGGGTACTGATGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097642.4 ENSMUST00000112999.8 ENSMUST00000148508.2 |
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| CDS-3UTR CAA 90 bp | GGTCGTGTCCCGAGAGACTCCAGACACATCACAGACATGGAGCACATAGGACCGGGCTCCCGCGCAGGTTaGCAGGCGTGCTCCCACCCC | + |
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Preference number: 5 (lower is better) Translates to: GRVPRDSRHITDMEHIGPGSRAG*QACSHP Trigger: GGGGTGGGAGCACGCCTGCAAACCTGCGCGGGAGCC...CGGTCCTATGTGCTCCATGTCTGTGATGTGTCTGGAGTCTCTCGGGACACGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| CDS CCA 90 bp | AGCCCGGTGCTACCTCCAGCCTGTGGGTGTGTCTCACAGTACAGCTaGCTTTGGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SPVLPPACGCVSQYS*LWPPPSWAPSLEGC Trigger: GCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACCGGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 90 bp | GTGCTACCTCCAGCCTGTGGGTGTGTCTCACAGTACAGCTGGCTTTaGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTGCTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: VLPPACGCVSQYSWL*PPPSWAPSLEGCWF Trigger: GAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 90 bp | ATTGGCTGCCAGGTCCATCAAAAGCCCGGTGCTACCTCCAGCCTGTaGGTGTGTCTCACAGTACAGCTGGCTTTGGCCTCCTCCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: IGCQVHQKPGATSSL*VCLTVQLALASSFL Trigger: CAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACCGGGCTTTTGATGGACCTGGCAGCCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS GCA 90 bp | AGCTGGCTTTGGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTaGTGGTTCAAGTTTCCCTGGAGTGTCAGGTACATGAGCATGTCC | + |
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Preference number: 5 (lower is better) Translates to: SWLWPPPSWAPSLEG*WFKFPWSVRYMSMS Trigger: GGACATGCTCATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 90 bp | TGTGGGTGTGTCTCACAGTACAGCTGGCTTTGGCCTCCTCCTTCCTaGGCCCCATCACTCGAAGGCTGCTGGTTCAAGTTTCCCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: CGCVSQYSWLWPPPS*APSLEGCWFKFPWS Trigger: ACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS GCA 90 bp | CATGAACGGCCTTCTCATTGGCTGCCAGGTCCATCAAAAGCCCGGTaGTACCTCCAGCCTGTGGGTGTGTCTCACAGTACAGCTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: HERPSHWLPGPSKAR*YLQPVGVSHSTAGF Trigger: AAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACCGGGCTTTTGATGGACCTGGCAGCCAATGAGAAGGCCGTTCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 90 bp | TGGCTTTGGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTGCTaGTTCAAGTTTCCCTGGAGTGTCAGGTACATGAGCATGTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: WLWPPPSWAPSLEGC*FKFPWSVRYMSMSC Trigger: ACAGGACATGCTCATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS TCA 90 bp | CACTCGAAGGCTGCTGGTTCAAGTTTCCCTGGAGTGTCAGGTACATaGGCATGTCCTGTACTCTCTTTTGAATCTTCCTTCTGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HSKAAGSSFPGVSGT*ACPVLSFESSFCLC Trigger: GCAGAGGCAGAAGGAAGATTCAAAAGAGAGTACAGGACATGCTCATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS-3UTR CAA 90 bp | ACAGTGTTCTTTATTAACTTAAACAAGGACACGGGCTGGCATTCCCAGAGACATACAGTACAGCTGGCTTaGGCCTCCTCCTTCCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: TVFFINLNKDTGWHSQRHTVQLA*ASSFLG Trigger: GCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGT...ATGTCTCTGGGAATGCCAGCCCGTGTCCTTGTTTAAGTTAATAAAGAACACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS-3UTR CAA 90 bp | GTCTTCATTTCTAGTGATATCAACACGGTGTCTACAATCAGCTGGTCGTGTCCCGTCCTGTACTCTCTTTaGAATCTTCCTTCTGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: VFISSDINTVSTISWSCPVLYSL*NLPSAS Trigger: AGAGGCAGAAGGAAGATTCAAAAGAGAGTACAGGAC...GGGACACGACCAGCTGATTGTAGACACCGTGTTGATATCACTAGAAATGAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS GCA 72 bp | TCTGAATCCCCAAAGGCCTGGGCTCCCGCGCAGGTTTaGAGGCGTGCTCCCACCCCCACGCATCGCTCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SESPKAWAPAQV*RRAPTPTHRSA Trigger: CGCGGAGCGATGCGTGGGGGTGGGAGCACGCCTGCAAACCTGCGCGGGAGCCCAGGCCTTTGGGGATTCAGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148508.2 |
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| CDS CCA 72 bp | CCAGCCTGTGGGTGTGTCTCACAGTACAGCTGGCTTTaGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: PACGCVSQYSWL*PPPSWAPSLEG Trigger: GCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CAA 90 bp | GGTGCTACCTCCAGCCTGTGGGTGTGTCTCACAGTACAGCTGGCTTaGGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTGCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: GATSSLWVCLTVQLA*ASSFLGPITRRLLV Trigger: AACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 72 bp | CAGGTCCATCAAAAGCCCGGTGCTACCTCCAGCCTGTaGGTGTGTCTCACAGTACAGCTGGCTTTGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: QVHQKPGATSSL*VCLTVQLALAS Trigger: GGAGGCCAAAGCCAGCTGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACCGGGCTTTTGATGGACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS GCA 72 bp | TGGCCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTaGTGGTTCAAGTTTCCCTGGAGTGTCAGGTACATG | + |
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Preference number: 6 (lower is better) Translates to: WPPPSWAPSLEG*WFKFPWSVRYM Trigger: CATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 72 bp | CCTCCTCCTTCCTGGGCCCCATCACTCGAAGGCTGCTaGTTCAAGTTTCCCTGGAGTGTCAGGTACATGAGC | + |
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Preference number: 6 (lower is better) Translates to: PPPSWAPSLEGC*FKFPWSVRYMS Trigger: GCTCATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS GCA 72 bp | CCTTCTCATTGGCTGCCAGGTCCATCAAAAGCCCGGTaGTACCTCCAGCCTGTGGGTGTGTCTCACAGTACA | + |
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Preference number: 6 (lower is better) Translates to: PSHWLPGPSKAR*YLQPVGVSHST Trigger: TGTACTGTGAGACACACCCACAGGCTGGAGGTAGCACCGGGCTTTTGATGGACCTGGCAGCCAATGAGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS CCA 72 bp | GTCTCACAGTACAGCTGGCTTTGGCCTCCTCCTTCCTaGGCCCCATCACTCGAAGGCTGCTGGTTCAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: VSQYSWLWPPPS*APSLEGCWFKF Trigger: AAACTTGAACCAGCAGCCTTCGAGTGATGGGGCCCAGGAAGGAGGAGGCCAAAGCCAGCTGTACTGTGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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| CDS TCA 72 bp | GCTGCTGGTTCAAGTTTCCCTGGAGTGTCAGGTACATaGGCATGTCCTGTACTCTCTTTTGAATCTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: AAGSSFPGVSGT*ACPVLSFESSF Trigger: GAAGGAAGATTCAAAAGAGAGTACAGGACATGCTCATGTACCTGACACTCCAGGGAAACTTGAACCAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112999.8 |
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