Pregenerated sensors for COPS8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034432Ensembl transcript IDs: ENSMUST00000036153.12, ENSMUST00000186750.2, ENSMUST00000186882.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGAGCTGCTGCTCATTGGGGATTGGCGGAACTGGGGCAGGCTCTaGCAGAGGCCTGGACAGTTCTCAACAGCAGGCATGAAGTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: GELLLIGDWRNWGRL*QRPGQFSTAGMKSP Trigger: TGGAGACTTCATGCCTGCTGTTGAGAACTGTCCAGGCCTCTGGCAGAGCCTGCCCCAGTTCCGCCAATCCCCAATGAGCAGCAGCTCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR GCA 90 bp | TCGGCATTTCTCCTCAGGATCTGGATGCGCAGCAGGCAGGAGGGCTaGAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACACA | + |
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Preference number: 1 (lower is better) Translates to: SAFLLRIWMRSRQEG*SPSLRSGAPSAQHT Trigger: TGTGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCCTGCTGCGCATCCAGATCCTGAGGAGAAATGCCGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 90 bp | GCTTCCTTGTTCTGGGATAGGAGGAAGAGCACACTCTCCAGAGCGTaGGTGACAATGTGGGGAGGGCACCACCTGGGACAGTCCTCCTCA | + |
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Preference number: 1 (lower is better) Translates to: ASLFWDRRKSTLSRA*VTMWGGHHLGQSSS Trigger: TGAGGAGGACTGTCCCAGGTGGTGCCCTCCCCACATTGTCACTCACGCTCTGGAGAGTGTGCTCTTCCTCCTATCCCAGAACAAGGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 90 bp | GCGGCACACAGGAGCGTGGTGTATGCTACAGCACCCTCTGCTACTTaGAGCAGGACAGCTTGTGTTCGGAGTCCAGTCCTTGACAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: AAHRSVVYATAPSAT*SRTACVRSPVLDRN Trigger: GTTTCTGTCAAGGACTGGACTCCGAACACAAGCTGTCCTGCTTCAAGTAGCAGAGGGTGCTGTAGCATACACCACGCTCCTGTGTGCCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR TCA 90 bp | TCACGCAATGGATGCTTGCACACACTGGGAAAACAAATGGAGCATTaGCAAGCTCCCCTCCAGGGTCCGCCACCACGCAGCTTTCTGATG | + |
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Preference number: 1 (lower is better) Translates to: SRNGCLHTLGKQMEH*QAPLQGPPPRSFLM Trigger: CATCAGAAAGCTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 90 bp | GCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACACACTaGACTCTGCTCCCTCCCTTCTTCTCTAAGGAGGCATCAGAACTT | + |
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Preference number: 1 (lower is better) Translates to: AVHLSGQELLQHSTH*TLLPPFFSKEASEL Trigger: AAGTTCTGATGCCTCCTTAGAGAAGAAGGGAGGGAGCAGAGTGCAGTGTGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 90 bp | ATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACACACTGCACTCTaGTCCCTCCCTTCTTCTCTAAGGAGGCATCAGAACTTGGAGTTT | + |
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Preference number: 1 (lower is better) Translates to: ISQVRSSFSTAHTAL*SLPSSLRRHQNLEF Trigger: AAACTCCAAGTTCTGATGCCTCCTTAGAGAAGAAGGGAGGGAGCAGAGTGCAGTGTGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 90 bp | AAGAACAAAAATAGATGCATTCGGCATTTCTCCTCAGGATCTGGATaGGCAGCAGGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: KNKNRCIRHFSSGSG*AAGRRAAVHLSGQE Trigger: CTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCCTGCTGCGCATCCAGATCCTGAGGAGAAATGCCGAATGCATCTATTTTTGTTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 90 bp | ACCACCTCAAATCTTCAAGGGCTGCCATACAAGAACAAAAATAGATaGATTCGGCATTTCTCCTCAGGATCTGGATGCGCAGCAGGCAGG | + |
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Preference number: 1 (lower is better) Translates to: TTSNLQGLPYKNKNR*IRHFSSGSGCAAGR Trigger: CCTGCCTGCTGCGCATCCAGATCCTGAGGAGAAATGCCGAATGCATCTATTTTTGTTCTTGTATGGCAGCCCTTGAAGATTTGAGGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 90 bp | TGCATTTTATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTCTaGACTCAGAATAAAACTCCATGTCTGTTTGCCAGTGACAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: CILSHPKDTEVLTLF*TQNKTPCLFASDRD Trigger: GTCCCTGTCACTGGCAAACAGACATGGAGTTTTATTCTGAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR GCA 90 bp | AAAGTGCCTGAGGAGAAAACTGTACAATGCGCTTCATCTTCTATGTaGATTTTATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTC | + |
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Preference number: 1 (lower is better) Translates to: KVPEEKTVQCASSSM*ILSHPKDTEVLTLF Trigger: GAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCATTGTACAGTTTTCTCCTCAGGCACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR GCA 90 bp | CTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTaGTCACCCTGTTCTGAACTCAGAATAAAACTCCATGTCTGTTTG | + |
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Preference number: 1 (lower is better) Translates to: LHLLCAFYHTQRTQR*SPCSELRIKLHVCL Trigger: CAAACAGACATGGAGTTTTATTCTGAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR TCA 90 bp | TCGATGTGTAATACTGATGGCTCTAACCAAAGTGATCAATACAAATaGAAACTGCTCCAAGGACATTCAAAAGTGCCTGAGGAGAAAACT | + |
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Preference number: 1 (lower is better) Translates to: SMCNTDGSNQSDQYK*KLLQGHSKVPEEKT Trigger: AGTTTTCTCCTCAGGCACTTTTGAATGTCCTTGGAGCAGTTTTCATTTGTATTGATCACTTTGGTTAGAGCCATCAGTATTACACATCGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACAGCCAGTGACAGGGACTaGAGGTGGATCTTGAACTCA | + |
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Preference number: 2 (lower is better) Translates to: GRRAAVHLSGQELLQHSTASDRD*RWILNS Trigger: TGAGTTCAAGATCCACCTTCAGTCCCTGTCACTGGC...TGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACCACTGGGAAAACAAATaGAGCATTGACAAGCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: RQEGCSPSLRSGAPSAQHHWENK*SIDKLP Trigger: GGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTG...GTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCTCCTCAAATCCCAAGCACATCATTTCAGCTAGAGGCCAGCGGCACACAGCTCTGCCAGAGGCCTaGACAGTTCTCAACAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QSSSNPKHIISARGQRHTALPEA*TVLNSR Trigger: CCTGCTGTTGAGAACTGTCCAGGCCTCTGGCAGAGC...TGTGTGCCGCTGGCCTCTAGCTGAAATGATGTGCTTGGGATTTGAGGAGGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR CAA 90 bp | CTCACGCAATGGATGCTTGCACACACTGGGAAAACAAATGGAGCATaGACAAGCTCCCCTCCAGGGTCCGCCACCACGCAGCTTTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: LTQWMLAHTGKTNGA*TSSPPGSATTQLSD Trigger: ATCAGAAAGCTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR TCA 90 bp | CAGTCCTCCTCAAATCCCAAGCACATCATTTCAGCTAGAGGCCAGCGGCACACAATGTCTGTTTGCCAGTaGCAGGGACTGAAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: QSSSNPKHIISARGQRHTMSVCQ*QGLKVD Trigger: ATCCACCTTCAGTCCCTGTCACTGGCAAACAGACAT...TGTGTGCCGCTGGCCTCTAGCTGAAATGATGTGCTTGGGATTTGAGGAGGACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR TCA 90 bp | GTGGGGAGGGCACCACCTGGGACAGTCCTCCTCAAATCCCAAGCACATCATTTCGTGCTCACCCTGTTCTaGACTCAGAATAAAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: VGRAPPGTVLLKSQAHHFVLTLF*TQNKTP Trigger: TGGAGTTTTATTCTGAGTTCAGAACAGGGTGAGCAC...GAAATGATGTGCTTGGGATTTGAGGAGGACTGTCCCAGGTGGTGCCCTCCCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR TCA 90 bp | GGAGCATTGACAAGCTCCCCTCCAGGGTCCGCCACCACGCAGCTTTCTGATGCTACATTCAAAAGTGCCTaGGGAGAAAACTGTACAATG | + |
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Preference number: 2 (lower is better) Translates to: GALTSSPPGSATTQLSDATFKSA*GENCTM Trigger: CATTGTACAGTTTTCTCCTCAGGCACTTTTGAATGT...AGCATCAGAAAGCTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR TCA 90 bp | GGAGCATTGACAAGCTCCCCTCCAGGGTCCGCCACCACGCAGCTTTCTGATGCTAGTGATCAATACAAATaGAAACTGCTCCAAGGACAT | + |
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Preference number: 2 (lower is better) Translates to: GALTSSPPGSATTQLSDASDQYK*KLLQGH Trigger: ATGTCCTTGGAGCAGTTTTCATTTGTATTGATCACT...AGCATCAGAAAGCTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR GCA 90 bp | ATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTAACTGGGGCAGGCTCTaGCAGAGGCCTGGACAGTTC | + |
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Preference number: 2 (lower is better) Translates to: MRFIFYVHFITPKGHRGANWGRL*QRPGQF Trigger: GAACTGTCCAGGCCTCTGGCAGAGCCTGCCCCAGTT...AGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR-3UTR CCA 90 bp | TATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTCTGAACTCAGAATAAAACGAGCTGCTGCTCATTaGGGATTGGCGGAACTGGGG | + |
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Preference number: 2 (lower is better) Translates to: YHTQRTQRCSPCSELRIKRAAAH*GLAELG Trigger: CCCCAGTTCCGCCAATCCCCAATGAGCAGCAGCTCG...TTTTATTCTGAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR-3UTR GCA 90 bp | CACGCAATGGATGCTTGCACACACTGGGAAAACAAATGGAGCATTGACAAGCTCCAAAGGACACAGAGGTaGTCACCCTGTTCTGAACTC | + |
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Preference number: 2 (lower is better) Translates to: HAMDACTHWENKWSIDKLQRTQR*SPCSEL Trigger: GAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTG...GAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR TCA 90 bp | ATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTGCCAGTGACAGGGACTaGAGGTGGATCTTGAACTCA | + |
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Preference number: 2 (lower is better) Translates to: MRFIFYVHFITPKGHRGAASDRD*RWILNS Trigger: TGAGTTCAAGATCCACCTTCAGTCCCTGTCACTGGC...AGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR TCA 90 bp | CCACCTCAAATCTTCAAGGGCTGCCATACAAGAACAAAAATAGATGCATTCGGCGCACCCTCTGCTACTTaGAGCAGGACAGCTTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: PPQIFKGCHTRTKIDAFGAPSAT*SRTACV Trigger: AACACAAGCTGTCCTGCTTCAAGTAGCAGAGGGTGC...GCCGAATGCATCTATTTTTGTTCTTGTATGGCAGCCCTTGAAGATTTGAGGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR TCA 90 bp | AATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCATGTCTGTTTGCCAGTaGCAGGGACTGAAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: NALHLLCAFYHTQRTQRCMSVCQ*QGLKVD Trigger: ATCCACCTTCAGTCCCTGTCACTGGCAAACAGACAT...GCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR GCA 90 bp | ACATCACTGCTTCCTTGTTCTGGGATAGGAGGAAGAGCACACTCTCCAGAGCGTGCTTCATCTTCTATGTaGATTTTATCACACCCAAAG | + |
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Preference number: 2 (lower is better) Translates to: TSLLPCSGIGGRAHSPERASSSM*ILSHPK Trigger: CTTTGGGTGTGATAAAATGCACATAGAAGATGAAGC...ACGCTCTGGAGAGTGTGCTCTTCCTCCTATCCCAGAACAAGGAAGCAGTGATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR GCA 90 bp | TTTTATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTCTGAACTCAGAATAAAGGACATTCAAAAGTaGCTGAGGAGAAAACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: FYHTQRTQRCSPCSELRIKDIQK*LRRKLY Trigger: GTACAGTTTTCTCCTCAGGCACTTTTGAATGTCCTT...TATTCTGAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTAAGGACATTCAAAAGTaGCTGAGGAGAAAACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: IFYVHFITPKGHRGAHPVKDIQK*LRRKLY Trigger: GTACAGTTTTCTCCTCAGGCACTTTTGAATGTCCTT...AACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR TCA 90 bp | ATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTAGTGATCAATACAAATaGAAACTGCTCCAAGGACAT | + |
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Preference number: 2 (lower is better) Translates to: MRFIFYVHFITPKGHRGASDQYK*KLLQGH Trigger: ATGTCCTTGGAGCAGTTTTCATTTGTATTGATCACT...AGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR GCA 90 bp | ATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTGCTTCATCTTCTATGTaGATTTTATCACACCCAAAG | + |
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Preference number: 2 (lower is better) Translates to: MRFIFYVHFITPKGHRGAASSSM*ILSHPK Trigger: CTTTGGGTGTGATAAAATGCACATAGAAGATGAAGC...AGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGCTCTAACCAAAGTGATCAATACAAATGAAAACTGCTCCAAGGACATTCAAACATTCAAAAGTGCCTaGGGAGAAAACTGTACAATG | + |
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Preference number: 2 (lower is better) Translates to: MALTKVINTNENCSKDIQTFKSA*GENCTM Trigger: CATTGTACAGTTTTCTCCTCAGGCACTTTTGAATGT...TTGAATGTCCTTGGAGCAGTTTTCATTTGTATTGATCACTTTGGTTAGAGCCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR CCA 72 bp | ATCGGTGAGCCGGGCGAGCTGCTGCTCATTGGGGATTaGCGGAACTGGGGCAGGCTCTGCCAGAGGCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: IGEPGELLLIGD*RNWGRLCQRPG Trigger: TCCAGGCCTCTGGCAGAGCCTGCCCCAGTTCCGCCAATCCCCAATGAGCAGCAGCTCGCCCGGCTCACCGAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR CCA 72 bp | CCGGGCGAGCTGCTGCTCATTGGGGATTGGCGGAACTaGGGCAGGCTCTGCCAGAGGCCTGGACAGTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: PGELLLIGDWRN*GRLCQRPGQFS Trigger: TGAGAACTGTCCAGGCCTCTGGCAGAGCCTGCCCCAGTTCCGCCAATCCCCAATGAGCAGCAGCTCGCCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR GCA 72 bp | CTCCTCAGGATCTGGATGCGCAGCAGGCAGGAGGGCTaGAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LLRIWMRSRQEG*SPSLRSGAPSA Trigger: TGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCCTGCTGCGCATCCAGATCCTGAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 72 bp | CTGCTCATTGGGGATTGGCGGAACTGGGGCAGGCTCTaGCAGAGGCCTGGACAGTTCTCAACAGCAGGCATG | + |
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Preference number: 3 (lower is better) Translates to: LLIGDWRNWGRL*QRPGQFSTAGM Trigger: CATGCCTGCTGTTGAGAACTGTCCAGGCCTCTGGCAGAGCCTGCCCCAGTTCCGCCAATCCCCAATGAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186882.2 |
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| 3UTR TCA 72 bp | GGGATAGGAGGAAGAGCACACTCTCCAGAGCGTGAGTaGCAATGTGGGGAGGGCACCACCTGGGACAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: GIGGRAHSPERE*QCGEGTTWDSP Trigger: AGGACTGTCCCAGGTGGTGCCCTCCCCACATTGTCACTCACGCTCTGGAGAGTGTGCTCTTCCTCCTATCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 72 bp | GGATGCTTGCACACACTGGGAAAACAAATGGAGCATTaGCAAGCTCCCCTCCAGGGTCCGCCACCACGCAGC | + |
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Preference number: 3 (lower is better) Translates to: GCLHTLGKQMEH*QAPLQGPPPRS Trigger: GCTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 72 bp | AAGCTCCCCTCCAGGGTCCGCCACCACGCAGCTTTCTaGTGCTACATCACTGCTTCCTTGTTCTGGGATAGG | + |
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Preference number: 3 (lower is better) Translates to: KLPSRVRHHAAF*CYITASLFWDR Trigger: CCTATCCCAGAACAAGGAAGCAGTGATGTAGCATCAGAAAGCTGCGTGGTGGCGGACCCTGGAGGGGAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR GCA 72 bp | GGCACACAGGAGCGTGGTGTATGCTACAGCACCCTCTaGTACTTGAAGCAGGACAGCTTGTGTTCGGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: GTQERGVCYSTL*YLKQDSLCSES Trigger: GGACTCCGAACACAAGCTGTCCTGCTTCAAGTAGCAGAGGGTGCTGTAGCATACACCACGCTCCTGTGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR CCA 72 bp | CACGCAATGGATGCTTGCACACACTGGGAAAACAAATaGAGCATTGACAAGCTCCCCTCCAGGGTCCGCCAC | + |
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Preference number: 3 (lower is better) Translates to: HAMDACTHWENK*SIDKLPSRVRH Trigger: GTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 72 bp | AGGAGCGTGGTGTATGCTACAGCACCCTCTGCTACTTaGAGCAGGACAGCTTGTGTTCGGAGTCCAGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: RSVVYATAPSAT*SRTACVRSPVL Trigger: AAGGACTGGACTCCGAACACAAGCTGTCCTGCTTCAAGTAGCAGAGGGTGCTGTAGCATACACCACGCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR GCA 72 bp | AATAGATGCATTCGGCATTTCTCCTCAGGATCTGGATaGGCAGCAGGCAGGAGGGCTGCAGTCCATCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: NRCIRHFSSGSG*AAGRRAAVHLS Trigger: TGAGAGATGGACTGCAGCCCTCCTGCCTGCTGCGCATCCAGATCCTGAGGAGAAATGCCGAATGCATCTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR CCA 72 bp | GACTGTCTGTCTCACGCAATGGATGCTTGCACACACTaGGAAAACAAATGGAGCATTGACAAGCTCCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: DCLSHAMDACTH*ENKWSIDKLPS Trigger: GGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTGAGACAGACAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR-3UTR CAA 90 bp | TGCAGACTGTCTGTCTCACGCAATGGATGCTTGCACACACTGGGAAAACAAATGAGCACCCTCTGCTACTaGAAGCAGGACAGCTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: CRLSVSRNGCLHTLGKQMSTLCY*KQDSLC Trigger: ACACAAGCTGTCCTGCTTCAAGTAGCAGAGGGTGCT...CATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTGAGACAGACAGTCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR CCA 72 bp | GTTGAGTTCTCACTGCAGACTGTCTGTCTCACGCAATaGATGCTTGCACACACTGGGAAAACAAATGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: VEFSLQTVCLTQ*MLAHTGKTNGA Trigger: TGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCATTGCGTGAGACAGACAGTCTGCAGTGAGAACTCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR TCA 72 bp | TCACACCCAAAGGACACAGAGGTGCTCACCCTGTTCTaGACTCAGAATAAAACTCCATGTCTGTTTGCCAGT | + |
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Preference number: 3 (lower is better) Translates to: SHPKDTEVLTLF*TQNKTPCLFAS Trigger: ACTGGCAAACAGACATGGAGTTTTATTCTGAGTTCAGAACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR GCA 72 bp | GAGGAGAAAACTGTACAATGCGCTTCATCTTCTATGTaGATTTTATCACACCCAAAGGACACAGAGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: EEKTVQCASSSM*ILSHPKDTEVL Trigger: GAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCATTGTACAGTTTTCTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186882.2 |
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| 3UTR GCA 72 bp | AATCTTCAAGGGCTGCCATACAAGAACAAAAATAGATaGATTCGGCATTTCTCCTCAGGATCTGGATGCGCA | + |
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Preference number: 3 (lower is better) Translates to: NLQGLPYKNKNR*IRHFSSGSGCA Trigger: TGCGCATCCAGATCCTGAGGAGAAATGCCGAATGCATCTATTTTTGTTCTTGTATGGCAGCCCTTGAAGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CCA 90 bp | GGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACAGAAGAACCATTCTTGTaGTGGAGTCGGCCTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: GRRAAVHLSGQELLQHSTEEPFL*WSRPAI Trigger: GATGGCAGGCCGACTCCACCACAAGAATGGTTCTTC...TGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| 3UTR CAA 72 bp | TGGATGCTTGCACACACTGGGAAAACAAATGGAGCATaGACAAGCTCCCCTCCAGGGTCCGCCACCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: WMLAHTGKTNGA*TSSPPGSATTQ Trigger: CTGCGTGGTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGTGCAAGCATCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR TCA 90 bp | ACATCACTGCTTCCTTGTTCTGGGATAGGAGGAAGAGCACACTCTCCAGAGCGTGACATCCAGGGTTCCTaGGGCTGGCTTCCTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TSLLPCSGIGGRAHSPERDIQGS*GWLPGK Trigger: CTTCCCAGGAAGCCAGCCTCAGGAACCCTGGATGTC...ACGCTCTGGAGAGTGTGCTCTTCCTCCTATCCCAGAACAAGGAAGCAGTGATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CCA 90 bp | ACACACTGGGAAAACAAATGGAGCATTGACAAGCTCCCCTCCAGGGTCCGCCACCTGAGGCTGGCTTCCTaGGAAGAACCATTCTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: THWENKWSIDKLPSRVRHLRLAS*EEPFLW Trigger: CCACAAGAATGGTTCTTCCCAGGAAGCCAGCCTCAG...GTGGCGGACCCTGGAGGGGAGCTTGTCAATGCTCCATTTGTTTTCCCAGTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CCA 90 bp | ATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCTCACCCTGTTCGAGCTGCTGCTCATTaGGGATTGGCGGAACTGGGG | + |
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Preference number: 4 (lower is better) Translates to: IFYVHFITPKGHRGAHPVRAAAH*GLAELG Trigger: CCCCAGTTCCGCCAATCCCCAATGAGCAGCAGCTCG...AACAGGGTGAGCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR GCA 90 bp | CCACCTCAAATCTTCAAGGGCTGCCATACAAGAACAAAAATAGATGCATTCGGCGGCGCGTCTCCTTGTTaGATCTCTAAGGGCTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PPQIFKGCHTRTKIDAFGGASPC*ISKGFH Trigger: ATGGAAGCCCTTAGAGATGCAACAAGGAGACGCGCC...GCCGAATGCATCTATTTTTGTTCTTGTATGGCAGCCCTTGAAGATTTGAGGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CCA 90 bp | AATGCGCTTCATCTTCTATGTGCATTTTATCACACCCAAAGGACACAGAGGTGCGAACCATTCTTGTGGTaGAGTCGGCCTGCCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: NALHLLCAFYHTQRTQRCEPFLW*SRPAIL Trigger: AAGGATGGCAGGCCGACTCCACCACAAGAATGGTTC...GCACCTCTGTGTCCTTTGGGTGTGATAAAATGCACATAGAAGATGAAGCGCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CCA 90 bp | GGGCACCACCTGGGACAGTCCTCCTCAAATCCCAAGCACATCATTTCAGCTAGATTATTCATGTCGTTCTaGAGCAAGTACAAAGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: GHHLGQSSSNPKHIISARLFMSF*SKYKAR Trigger: TCTAGCTTTGTACTTGCTCCAGAACGACATGAATAA...TCTAGCTGAAATGATGTGCTTGGGATTTGAGGAGGACTGTCCCAGGTGGTGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR GCA 90 bp | ATGGCTCTAACCAAAGTGATCAATACAAATGAAAACTGCTCCAAGGACATTCAACCAGGGAAATCTCTTTaGCAGATTCGCTGTCCAACT | + |
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Preference number: 4 (lower is better) Translates to: MALTKVINTNENCSKDIQPGKSL*QIRCPT Trigger: AGTTGGACAGCGAATCTGGCAAAGAGATTTCCCTGG...TTGAATGTCCTTGGAGCAGTTTTCATTTGTATTGATCACTTTGGTTAGAGCCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CAA 90 bp | GGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACATGGGAAGAACCATTCTaGTGGTGGAGTCGGCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: GRRAAVHLSGQELLQHSTWEEPF*WWSRPA Trigger: GGCAGGCCGACTCCACCACAAGAATGGTTCTTCCCA...TGTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS-3UTR CAA 90 bp | AGGCAGGAGGGCTGCAGTCCATCTCTCAGGTCAGGAGCTCCTTCAGCACAGCACCCCAGGGAAATCTCTTaGCCAGATTCGCTGTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: RQEGCSPSLRSGAPSAQHPREIS*PDSLSN Trigger: GTTGGACAGCGAATCTGGCAAAGAGATTTCCCTGGG...GTGCTGTGCTGAAGGAGCTCCTGACCTGAGAGATGGACTGCAGCCCTCCTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036153.12 |
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| CDS CCA 72 bp | TCAAGGAGACATCCAGGGTTCCTGAGGCTGGCTTCCTaGGAAGAACCATTCTTGTGGTGGAGTCGGCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SRRHPGFLRLAS*EEPFLWWSRPA Trigger: GGCAGGCCGACTCCACCACAAGAATGGTTCTTCCCAGGAAGCCAGCCTCAGGAACCCTGGATGTCTCCTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186750.2 |
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| CDS CCA 72 bp | CTGAGGCTGGCTTCCTGGGAAGAACCATTCTTGTGGTaGAGTCGGCCTGCCATCCTTGTTCCAACACGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LRLASWEEPFLW*SRPAILVPTRL Trigger: AAGGCGTGTTGGAACAAGGATGGCAGGCCGACTCCACCACAAGAATGGTTCTTCCCAGGAAGCCAGCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186750.2 |
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| CDS CAA 90 bp | AGACATCCAGGGTTCCTGAGGCTGGCTTCCTGGGAAGAACCATTCTaGTGGTGGAGTCGGCCTGCCATCCTTGTTCCAACACGCCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RHPGFLRLASWEEPF*WWSRPAILVPTRLS Trigger: TGAAAGGCGTGTTGGAACAAGGATGGCAGGCCGACTCCACCACAAGAATGGTTCTTCCCAGGAAGCCAGCCTCAGGAACCCTGGATGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036153.12 ENSMUST00000186750.2 |
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