Pregenerated sensors for COPS7A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030127Ensembl transcript IDs: ENSMUST00000032220.15, ENSMUST00000112439.9, ENSMUST00000129446.8, ENSMUST00000129976.8, ENSMUST00000148485.2
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAAGGGGAGGAGGAGGAACTGCAGATTAGGCATGCAGGGGTAGGTGTGGGTGGTGGTACCAACAGAACATaGCCTGCACTGGCCTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QGEEEELQIRHAGVGVGGGTNRT*PALASS Trigger: GGAGGAGGCCAGTGCAGGTCATGTTCTGTTGGTACC...ACCACCCACACCTACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR-3UTR CCA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAAGGCAGGTAGGCAGCTaGGACCCCACATTCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLRQVGS*DPTFPG Trigger: CCCTGGGAATGTGGGGTCCCAGCTGCCTACCTGCCT...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR-3UTR GCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTAGAGGGTGTGGCTTATaGTTGGGGGTGGAGGAGATG | + |
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Preference number: 2 (lower is better) Translates to: LGGKCPATPRVADWLQNSRGCGL*LGVEEM Trigger: CATCTCCTCCACCCCCAAGCATAAGCCACACCCTCT...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR-3UTR CCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTACTAGCATTATCAGCTaGCCAGGGGCACAGGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: LGGKCPATPRVADWLQNSTSIIS*PGAQEG Trigger: GCCTTCCTGTGCCCCTGGCCAGCTGATAATGCTAGT...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGAACTCTAAGGCTGGAATGAAGGTGGAGACCCCCTTCCCCATGGCTTTTGGGAGGAGGAGGAACTaGAGATTAGGCATGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LQNSKAGMKVETPFPMAFGRRRN*RLGMQG Trigger: CCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCC...AAAAGCCATGGGGAAGGGGGTCTCCACCTTCATTCCAGCCTTAGAGTTCTGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR-3UTR TCA 90 bp | AAAGGGACAGAGACCAACAAATCTAATCGTTTTATGTGCTTTCAATGTCAAAAGGGTGCCCGTGACTGCTaGCCATGGGCTGAGGGATGG | + |
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Preference number: 2 (lower is better) Translates to: KGTETNKSNRFMCFQCQKGARDC*PWAEGW Trigger: CCATCCCTCAGCCCATGGTCAGCAGTCACGGGCACC...CTTTTGACATTGAAAGCACATAAAACGATTAGATTTGTTGGTCTCTGTCCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR-3UTR TCA 90 bp | GTTTTATGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGGGCAGGACAGTCAGTaGTGGTGTCTGCATCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: VLCAFNVKSQVHYQHLPCGQDSQ*WCLHLH Trigger: ATGGAGATGCAGACACCATCACTGACTGTCCTGCCC...ACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR TCA 72 bp | AGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTGCTaGCCATGGGCTGAGGGATGGAGCAATCTGTCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: RTWRCSAGARDC*PWAEGWSNLSR Trigger: CCTGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCACCTGCTGAACACCGCCATGTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR-3UTR CAA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTGGGTGTGGCTTATGCTaGGGGGTGGAGGAGATGAAA | + |
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Preference number: 3 (lower is better) Translates to: LGGKCPATPRVADWLQNSGCGLC*GVEEMK Trigger: TTTCATCTCCTCCACCCCCAAGCATAAGCCACACCC...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| 3UTR TCA 72 bp | GTTCACTACCAACACCTCCCTTGTGATTCTCTGAGGTaGCAGGAAGCAGACCACACTGCAGGTCCTTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: VHYQHLPCDSLR*QEADHTAGPWA Trigger: TGCCCAAGGACCTGCAGTGTGGTCTGCTTCCTGTCACCTCAGAGAATCACAAGGGAGGTGTTGGTAGTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR TCA 72 bp | GTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCTaGGGTGACAGGAAGCAGACCACACTGCAGGTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: VKFTTNTSLVIL*GDRKQTTLQVL Trigger: AAGGACCTGCAGTGTGGTCTGCTTCCTGTCACCTCAGAGAATCACAAGGGAGGTGTTGGTAGTGAACTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR-3UTR CAA 90 bp | TGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCCACACTGCAGGTCCTaGGGCAGGACAGTCAGTGAT | + |
|
Preference number: 3 (lower is better) Translates to: CAFNVKSQVHYQHLPCDSPHCRS*GRTVSD Trigger: ATCACTGACTGTCCTGCCCAAGGACCTGCAGTGTGG...AGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| 3UTR GCA 72 bp | AAAGGGACAGAGACCAACAAATCTAATCGTTTTATGTaGTTTCAATGTCAAAAGTCAAGTTCACTACCAACA | + |
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Preference number: 3 (lower is better) Translates to: KGTETNKSNRFM*FQCQKSSSLPT Trigger: TGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAACGATTAGATTTGTTGGTCTCTGTCCCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR TCA 90 bp | CAAGGGGAGGAGGAGGAACTGCAGATTAGGCATGCAGGGGTAGGTGTGGGTGGTGCTGGTTGGCACGGCTaGCCTGCTCTTCGATGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: QGEEEELQIRHAGVGVGGAGWHG*PALRCP Trigger: CGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGC...ACCACCCACACCTACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR TCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGTCTGGGCGATGGCACTaGGGTCCTGGCGCTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQSGRWH*GPGAGC Trigger: ACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGA...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTCTGAGGTCCTGGCGCTaGATGTCCCGCCCGATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGGKCPATPRVADWLQNSLRSWR*MSRPML Trigger: CAGCATCGGGCGGGACATCCAGCGCCAGGACCTCAG...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CAGCAGGTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCACACTCTTGCAGGGTCTaGGCGATGGCACTGAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QQVPVTADHGLRDGAICPHSCRV*AMALRS Trigger: GGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTG...TGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCACCTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | GTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCAGGGTCTTGCTGCTCCTTGTGCTaGTTGGCACGGCTGACCTGC | + |
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Preference number: 4 (lower is better) Translates to: VPVTADHGLRDGAICPGSCCSLC*LARLTC Trigger: GCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCA...AGACCCTGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | GTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCAGGGTCTTGGAGGCTTTCTTGCTaGGCTGGCGCTGGTTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VPVTADHGLRDGAICPGSWRLSC*AGAGWC Trigger: GCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCA...AGACCCTGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | CAAGGGGAGGAGGAGGAACTGCAGATTAGGCATGCAGGGGTAGGTGTGGGTGGTAGCTGCTGCTCCTTGTaGTGGTTGGCACGGCTGACC | + |
|
Preference number: 4 (lower is better) Translates to: QGEEEELQIRHAGVGVGGSCCSL*WLARLT Trigger: GGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCT...ACCACCCACACCTACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACGCCTCCAGCACCTGGTaGATGAGTGTGGCCAGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: GVCISIVRTWRCSAGARDASSTW*MSVASA Trigger: GGCACTGGCCACACTCATCCACCAGGTGCTGGAGGC...GTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGTGCTGCTCCTTGTGCTaGTTGGCACGGCTGACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQCCSLC*LARLTC Trigger: GCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCA...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CAGCAGGTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCAGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: QQVPVTADHGLRDGAICPAFLLG*RWLVPE Trigger: TTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGC...TGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCACCTGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGTGGAGGCTTTCTTGCTaGGCTGGCGCTGGTTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQWRLSC*AGAGWC Trigger: GCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCA...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR TCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGCATAGGCAAACACTGTaGGCAGCCGGAAGGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQHRQTL*AAGRWR Trigger: CCTCCACCTTCCGGCTGCTCACAGTGTTTGCCTATG...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR TCA 90 bp | CAAGGGGAGGAGGAGGAACTGCAGATTAGGCATGCAGGGGTAGGTGTGGGTGGTTCAACCTCTAGCCGCTaGTTGCGCTGGTCCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: QGEEEELQIRHAGVGVGGSTSSR*LRWSRE Trigger: CTCTCTGGACCAGCGCAATCAGCGGCTAGAGGTTGA...ACCACCCACACCTACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGTTGGCACGGCTGACCTaGTCTTCGATGCCCGACAAC | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQLARLT*SSMPDN Trigger: GTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAA...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTCCTTGGAGGCTTTCTTaGTGGGCTGGCGCTGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LGGKCPATPRVADWLQNSPWRLS*WAGAGW Trigger: CCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGG...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CTCCAGAACTCTAAGGCTGGAATGAAGGTGGAGACCCCCTTCCCCATGGCTTTTATGGCACTGAGGTCCTaGCGCTGGATGTCCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LQNSKAGMKVETPFPMAFMALRS*RWMSRP Trigger: CGGGCGGGACATCCAGCGCCAGGACCTCAGTGCCAT...AAAAGCCATGGGGAAGGGGGTCTCCACCTTCATTCCAGCCTTAGAGTTCTGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGTGTTGCTCAGGATCCTaGGAGGTGGCTGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQCCSGS*EVAAAA Trigger: TGCTGCTGCAGCCACCTCCCAGGATCCTGAGCAACA...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTGCTGGGCTGGCGCTGGTTaGTGCCAGAAGCTGGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: VCISIVRTWRCSAGARDCWAGAG*CQKLVL Trigger: GAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCA...GCAGTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR TCA 90 bp | CAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGCTGGTTGGCACGGCTaGCCTGCTCTTCGATGCCCG | + |
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Preference number: 4 (lower is better) Translates to: QSVMVSASPLLGHGGVQQAGWHG*PALRCP Trigger: CGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGC...CTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCAGGGTCTGCAAGGAGCAGAAACTaGTCTTGGTTCTGCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: VPVTADHGLRDGAICPGSARSRN*SWFCPV Trigger: GACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGC...AGACCCTGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGGATGAGTGTGGCCAGTaGCGCCCCCTTAGCCGACTT | + |
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Preference number: 4 (lower is better) Translates to: AFQMQPTRQGEEEELQIRDECGQ*RPLSRL Trigger: AAGTCGGCTAAGGGGGCGGCACTGGCCACACTCATC...CCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | GTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTGCGCTGGCGCTGGTTGGTaGCAGAAGCTGGTTCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: VCISIVRTWRCSAGARDCAGAGW*QKLVLS Trigger: TGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGC...GCAGTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGCCTCCAGCACCTGGTaGATGAGTGTGGCCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLASSTW*MSVASA Trigger: GGCACTGGCCACACTCATCCACCAGGTGCTGGAGGC...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGACAAGGTCTTCCAGCTaGCGCACGTTTCGAAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQTRSSS*RTFRRA Trigger: TGCCCTTCGAAACGTGCGCCAGCTGGAAGACCTTGT...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | CAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGCTGAGGTCCTGGCGCTaGATGTCCCGCCCGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: QSVMVSASPLLGHGGVQQLRSWR*MSRPML Trigger: CAGCATCGGGCGGGACATCCAGCGCCAGGACCTCAG...CTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | GCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGTTGCTGGGCTGGCGCTaGTTGGTGCCAGAAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: AFQMQPTRQGEEEELQIRLLGWR*LVPEAG Trigger: ACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAA...CCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTCTCCCCCTTGCCCTTaGAGGCTTTCTTGCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GVCISIVRTWRCSAGARDSPPCP*RLSCWA Trigger: AGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGA...GTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR TCA 90 bp | GGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGTCTGGGCGATGGCACTaGGGTCCTGGCGCTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: GQSVMVSASPLLGHGGVQSGRWH*GPGAGC Trigger: ACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGA...CTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | CCCATGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGAACTGCTCTTGGTTCTaGCCTGTCACCTTCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: PMAFQMQPTRQGEEEELQNCSWF*PVTFTS Trigger: GGAGGTGAAGGTGACAGGGCAGAACCAAGAGCAGTT...CTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | GTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCAGGGTCTGGCCTCCAGCAACACTaGATATGGGATACACTTGAC | + |
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Preference number: 4 (lower is better) Translates to: VPVTADHGLRDGAICPGSGLQQH*IWDTLD Trigger: GTCAAGTGTATCCCATATGCAGTGTTGCTGGAGGCC...AGACCCTGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTACCTCACTTTCGATCTaGTGCTTCAGGCCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LGGKCPATPRVADWLQNSTSLSI*CFRPSC Trigger: GCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGT...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | GGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACACCTCACTTTCGATCTaGTGCTTCAGGCCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GVCISIVRTWRCSAGARDTSLSI*CFRPSC Trigger: GCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGT...GTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGTCCCTCGGAGTCCCTTaGCCTTGGAGGCTTTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: AFQMQPTRQGEEEELQIRSLGVP*PWRLSC Trigger: GCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGA...CCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CCA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTATGGGCTGGCGCTGGTTaGTGCCAGAAGCTGGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLWAGAG*CQKLVL Trigger: GAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCA...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGGGAGTCCCTTGCCCTTaGAGGCTTTCTTGCTGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: AFQMQPTRQGEEEELQIRGVPCP*RLSCWA Trigger: AGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCC...CCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR GCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTGCAAGGAGCAGAAACTaGTCTTGGTTCTGCCCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LGGKCPATPRVADWLQNSARSRN*SWFCPV Trigger: GACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGC...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | TCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTGCTAGCTCTGTCAGGTGTTaGTCAGGATCCTGGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SASPLLGHGGVQQVPVTASSVRC*SGSWEV Trigger: CACCTCCCAGGATCCTGAGCAACACCTGACAGAGCT...AGCAGTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLAFLLG*RWLVPE Trigger: TTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGC...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR GCA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTGGCCTCCAGCAACACTaGATATGGGATACACTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: LGGKCPATPRVADWLQNSGLQQH*IWDTLD Trigger: GTCAAGTGTATCCCATATGCAGTGTTGCTGGAGGCC...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | TCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGTTCAGGCCCAGCTGCTaGTCCTTGTGCTGGTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SVMVSASPLLGHGGVQQVFRPSC*SLCWLA Trigger: TGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAA...CACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR GCA 90 bp | GGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGTGCTTCAGGCCCAGCTaGTGCTCCTTGTGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GQSVMVSASPLLGHGGVQCFRPS*CSLCWL Trigger: CAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCA...CTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR GCA 90 bp | CTCCAGAACTCTAAGGCTGGAATGAAGGTGGAGACCCCCTTCCCCATGGCTTTTTCACTTTCGATCTGCTaGTTCAGGCCCAGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LQNSKAGMKVETPFPMAFSLSIC*FRPSCC Trigger: GCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGA...AAAAGCCATGGGGAAGGGGGTCTCCACCTTCATTCCAGCCTTAGAGTTCTGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR GCA 90 bp | AGGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCACCTTGGAGGCTTTCTTaGTGGGCTGGCGCTGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: RTVSDGVCISIVRTWRCSPWRLS*WAGAGW Trigger: CCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGG...TGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CCA 90 bp | CAGCAGGTGCCCGTGACTGCTGACCATGGGCTGAGGGATGGAGCAATCTGTCCACAGCAACACTGCATATaGGATACACTTGACTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QQVPVTADHGLRDGAICPQQHCI*DTLDFG Trigger: GCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCTG...TGGACAGATTGCTCCATCCCTCAGCCCATGGTCAGCAGTCACGGGCACCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CCA 90 bp | AGGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCATTGCTGGGCTGGCGCTaGTTGGTGCCAGAAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RTVSDGVCISIVRTWRCSLLGWR*LVPEAG Trigger: ACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAA...TGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR GCA 90 bp | TCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGGGATGTCCCGCCCGATaGTGTAATCAACCTCTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SVMVSASPLLGHGGVQQVGCPAR*CNQPLA Trigger: GGCTAGAGGTTGATTACAGCATCGGGCGGGACATCC...CACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR GCA 90 bp | TCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTGCTGGCTGCAGCAGCAGCTaGTGTCGTAACTTTAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: SASPLLGHGGVQQVPVTAGCSSS*CRNFNG Trigger: ACCATTAAAGTTACGACAGCAGCTGCTGCTGCAGCC...AGCAGTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGCTGCAGCAGCAGCTaGTGTCGTAACTTTAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLGCSSS*CRNFNG Trigger: ACCATTAAAGTTACGACAGCAGCTGCTGCTGCAGCC...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGATTCAGGCCCAGCTGCTaGTCCTTGTGCTGGTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: EERNNCSVMGFWEENVQRFRPSC*SLCWLA Trigger: TGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAA...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGATGCTTCAGGCCCAGCTaGTGCTCCTTGTGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: EERNNCSVMGFWEENVQRCFRPS*CSLCWL Trigger: CAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCA...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR GCA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGAGCTGGCGCTGGTTGGTaGCAGAAGCTGGTTCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: EERNNCSVMGFWEENVQRAGAGW*QKLVLS Trigger: TGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGC...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GGCTTATGCTTGGGGGTGGAGGAGATGAAAAGTAATGAACTAGCATTATCAGCTCACTCTTGCAGGGTCTaGGCGATGGCACTGAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GLCLGVEEMKSNELALSAHSCRV*AMALRS Trigger: GGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTG...AGCTGATAATGCTAGTTCATTACTTTTCATCTCCTCCACCCCCAAGCATAAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CCA 90 bp | CTCCAGAACTCTAAGGCTGGAATGAAGGTGGAGACCCCCTTCCCCATGGCTTTTCAGCAACACTGCATATaGGATACACTTGACTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LQNSKAGMKVETPFPMAFQQHCI*DTLDFG Trigger: GCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCTG...AAAAGCCATGGGGAAGGGGGTCTCCACCTTCATTCCAGCCTTAGAGTTCTGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR TCA 90 bp | GTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCCATAGGCAAACACTGTaGGCAGCCGGAAGGTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VLSMSKVKFTTNTSLVILHRQTL*AAGRWR Trigger: CCTCCACCTTCCGGCTGCTCACAGTGTTTGCCTATG...GAGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GGCTTATGCTTGGGGGTGGAGGAGATGAAAAGTAATGAACTAGCATTATCAGCTGGATGTCCCGCCCGATaGTGTAATCAACCTCTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GLCLGVEEMKSNELALSAGCPAR*CNQPLA Trigger: GGCTAGAGGTTGATTACAGCATCGGGCGGGACATCC...AGCTGATAATGCTAGTTCATTACTTTTCATCTCCTCCACCCCCAAGCATAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR GCA 90 bp | TGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTAGCTGCTGCTCCTTGTaGTGGTTGGCACGGCTGACC | + |
|
Preference number: 4 (lower is better) Translates to: CAFNVKSQVHYQHLPCDSSCCSL*WLARLT Trigger: GGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCT...AGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GGCTTATGCTTGGGGGTGGAGGAGATGAAAAGTAATGAACTAGCATTATCAGCTAGCTCTGTCAGGTGTTaGTCAGGATCCTGGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GLCLGVEEMKSNELALSASSVRC*SGSWEV Trigger: CACCTCCCAGGATCCTGAGCAACACCTGACAGAGCT...AGCTGATAATGCTAGTTCATTACTTTTCATCTCCTCCACCCCCAAGCATAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGAGTTGGTGCCAGAAGCTaGTTCTCTCAGCTCTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: EERNNCSVMGFWEENVQRVGARS*FSQLCQ Trigger: CTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAAC...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | GGCTTATGCTTGGGGGTGGAGGAGATGAAAAGTAATGAACTAGCATTATCAGCTACTTGGACCAAATCTTaGCGCTCCCTCGGAGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GLCLGVEEMKSNELALSATWTKS*RSLGVP Trigger: AGGGACTCCGAGGGAGCGCCAAGATTTGGTCCAAGT...AGCTGATAATGCTAGTTCATTACTTTTCATCTCCTCCACCCCCAAGCATAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR CCA 90 bp | TCTAATCGTTTTATGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTATGGCACTGAGGTCCTaGCGCTGGATGTCCCGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: SNRFMCFQCQKSSSLPTPMALRS*RWMSRP Trigger: CGGGCGGGACATCCAGCGCCAGGACCTCAGTGCCAT...AGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAACGATTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | GTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCAACTGCTCTTGGTTCTaGCCTGTCACCTTCACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VLSMSKVKFTTNTSLVILNCSWF*PVTFTS Trigger: GGAGGTGAAGGTGACAGGGCAGAACCAAGAGCAGTT...GAGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR GCA 90 bp | TGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTTCACTTTCGATCTGCTaGTTCAGGCCCAGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CAFNVKSQVHYQHLPCDSSLSIC*FRPSCC Trigger: GCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGA...AGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR TCA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGAAGCCAGAGTGACAACTaGCAGATGTCGAAGCTTATT | + |
|
Preference number: 4 (lower is better) Translates to: EERNNCSVMGFWEENVQRSQSDN*QMSKLI Trigger: AATAAGCTTCGACATCTGTCAGTTGTCACTCTGGCT...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
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| CDS-3UTR GCA 90 bp | AAAGGGACAGAGACCAACAAATCTAATCGTTTTATGTGCTTTCAATGTCAAAAGTTGGCACGGCTGACCTaGTCTTCGATGCCCGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: KGTETNKSNRFMCFQCQKLARLT*SSMPDN Trigger: GTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAA...CTTTTGACATTGAAAGCACATAAAACGATTAGATTTGTTGGTCTCTGTCCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS-3UTR CCA 90 bp | TCTAATCGTTTTATGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTTGTTGCTCAGGATCCTaGGAGGTGGCTGCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SNRFMCFQCQKSSSLPTPCCSGS*EVAAAA Trigger: TGCTGCTGCAGCCACCTCCCAGGATCCTGAGCAACA...AGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAACGATTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR TCA 90 bp | GTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCAGCCAGAGTGACAACTaGCAGATGTCGAAGCTTATT | + |
|
Preference number: 4 (lower is better) Translates to: VLSMSKVKFTTNTSLVILSQSDN*QMSKLI Trigger: AATAAGCTTCGACATCTGTCAGTTGTCACTCTGGCT...GAGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CCA 90 bp | TCTAATCGTTTTATGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTGTTGGTGCCAGAAGCTaGTTCTCTCAGCTCTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: SNRFMCFQCQKSSSLPTPVGARS*FSQLCQ Trigger: CTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAAC...AGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAACGATTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS TCA 90 bp | CCTCACAGCCCACGCACCACTCTTGCAGGGTCTGGGCGATGGCACTaGGGTCCTGGCGCTGGATGTCCCGCCCGATGCTGTAATCAACCT | + |
|
Preference number: 5 (lower is better) Translates to: PHSPRTTLAGSGRWH*GPGAGCPARCCNQP Trigger: AGGTTGATTACAGCATCGGGCGGGACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTGGTGCGTGGGCTGTGAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
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| CDS TCA 90 bp | GCTGCTTCAGGCCCAGCTGCTGCTCCTTGTGCTGGTTGGCACGGCTaGCCTGCTCTTCGATGCCCGACAACACAACCTCACAGCCCACGC | + |
|
Preference number: 5 (lower is better) Translates to: AASGPAAAPCAGWHG*PALRCPTTQPHSPR Trigger: GCGTGGGCTGTGAGGTTGTGTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
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| CDS CCA 90 bp | GCGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: ALPRSPLPLEAFLLG*RWLVPEAGSLSSVR Trigger: CCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 90 bp | TTCAGGCCCAGCTGCTGCTCCTTGTGCTGGTTGGCACGGCTGACCTaGTCTTCGATGCCCGACAACACAACCTCACAGCCCACGCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: FRPSCCSLCWLARLT*SSMPDNTTSQPTHH Trigger: GTGGTGCGTGGGCTGTGAGGTTGTGTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
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| CDS CCA 90 bp | TCTTGGCGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTaGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SWRSLGVPCPWRLSC*AGAGWCQKLVLSAL Trigger: CAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGCCAAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CCA 90 bp | CCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTaGTTGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: PRSPLPLEAFLLGWR*LVPEAGSLSSVRCC Trigger: GCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CAA 90 bp | CAAGGGGAGGAGGAGGAACTGCAGATTAGGCATGCAGGGGTAGGTGTGGGTGGTCCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: QGEEEELQIRHAGVGVGGPLEAF*LGWRWL Trigger: CAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGG...ACCACCCACACCTACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 90 bp | AAATCTTGGCGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTaGTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: KSWRSLGVPCPWRLS*WAGAGWCQKLVLSA Trigger: AGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGCCAAGATTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 90 bp | CCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTaGCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: PPCPWRLSCWAGAGW*QKLVLSALSGVAQD Trigger: ATCCTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CCA 90 bp | GGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTaGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: GVPCPWRLSCWAGAG*CQKLVLSALSGVAQ Trigger: CTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CCA 90 bp | TCTCCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTaGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCAG | + |
|
Preference number: 5 (lower is better) Translates to: SPPCPWRLSCWAGAG*CQKLVLSALSGVAQ Trigger: CTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS GCA 90 bp | GTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTaGCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: VPCPWRLSCWAGAGW*QKLVLSALSGVAQD Trigger: ATCCTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CCA 90 bp | CTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCTaGTTCTCTCAGCTCTGTCAGGTGTTGCTCAGGATCCTGGGAGGT | + |
|
Preference number: 5 (lower is better) Translates to: LGGFLAGLALVGARS*FSQLCQVLLRILGG Trigger: ACCTCCCAGGATCCTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 |
||
| CDS CCA 90 bp | ATCTTCTCCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTaGTTGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: IFSPLPLEAFLLGWR*LVPEAGSLSSVRCC Trigger: GCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | GCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGGCGGAGTCCCTTGCCCTaGGAGGCTTTCTTGCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: AFQMQPTRQGEEEELQIRRSPLP*EAFLLG Trigger: GCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCG...CCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 90 bp | GCTGGATGTCCCGCCCGATGCTGTAATCAACCTCTAGCCGCTGATTaGGCTGGTCCAGAGAGCCACGAAGGACATCAGCATACACAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: AGCPARCCNQPLAAD*AGPESHEGHQHTQP Trigger: AGGCTGTGTATGCTGATGTCCTTCGTGGCTCTCTGGACCAGCGCAATCAGCGGCTAGAGGTTGATTACAGCATCGGGCGGGACATCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
||
| CDS CCA 90 bp | GGATTAATCTTCTCCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GLIFSPLPLEAFLLG*RWLVPEAGSLSSVR Trigger: CCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGAACTCTAAGGCTGGAATGAAGGTGGAGACCCCCTTCCCCATGGCTTTTCTGGGCTGGCGCTGGTaGGTGCCAGAAGCTGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LQNSKAGMKVETPFPMAFLGWRW*VPEAGS Trigger: AGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAG...AAAAGCCATGGGGAAGGGGGTCTCCACCTTCATTCCAGCCTTAGAGTTCTGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 90 bp | TTAAGGTTGGCAACCTCACTTTCGATCTGCTGCTTCAGGCCCAGCTaGTGCTCCTTGTGCTGGTTGGCACGGCTGACCTGCTCTTCGATG | + |
|
Preference number: 5 (lower is better) Translates to: LRLATSLSICCFRPS*CSLCWLARLTCSSM Trigger: CATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGTTGCCAACCTTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS-3UTR CAA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGCCCCCTTAGCCGACTaGGCAAGGAGCAGAAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLAPLAD*ARSRNC Trigger: GCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGC...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CAA 90 bp | TGGCTTTTCAGATGCAGCCCACTAGGCAAGGGGAGGAGGAGGAACTGCAGATTAGACTTGGACCAAATCTaGGCGCTCCCTCGGAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: WLFRCSPLGKGRRRNCRLDLDQI*ALPRSP Trigger: GGGACTCCGAGGGAGCGCCAAGATTTGGTCCAAGTC...TAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS TCA 90 bp | TGGCTTCAGCTAAGTAGTCCGCATAGGTCCCATAGGCAAACACTGTaGGCAGCCGGAAGGTGGAGGCAAAGTCGCTTTCTGCCAGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: WLQLSSPHRSHRQTL*AAGRWRQSRFLPAL Trigger: GAGAGCTGGCAGAAAGCGACTTTGCCTCCACCTTCCGGCTGCTCACAGTGTTTGCCTATGGGACCTATGCGGACTACTTAGCTGAAGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
||
| CDS CCA 90 bp | CGAAGGACATCAGCATACACAGCCTCGATCACAAGGTCTTCCAGCTaGCGCACGTTTCGAAGGGCAAGGGCCTCCAGCAACACTGCATAT | + |
|
Preference number: 5 (lower is better) Translates to: RRTSAYTASITRSSS*RTFRRARASSNTAY Trigger: ATATGCAGTGTTGCTGGAGGCCCTTGCCCTTCGAAACGTGCGCCAGCTGGAAGACCTTGTGATCGAGGCTGTGTATGCTGATGTCCTTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
||
| CDS-3UTR CAA 90 bp | CTGGGAGGAAAATGTCCAGCGACTCCCAGGGTAGCAGACTGGCTCCAGAACTCTGAGCAGAAACTGCTCTaGGTTCTGCCCTGTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: LGGKCPATPRVADWLQNSEQKLL*VLPCHL Trigger: AAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTC...AGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTGGACATTTTCCTCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CAA 90 bp | AGGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCACCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: RTVSDGVCISIVRTWRCSPLEAF*LGWRWL Trigger: CAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGG...TGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | GGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGCAGGTGCCCGTGACTTAATCTTCTCCCCCTaGCCCTTGGAGGCTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GVCISIVRTWRCSAGARDLIFSP*PLEAFL Trigger: CAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAA...GTCACGGGCACCTGCTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | GGACAGTCAGTGATGGTGTCTGCATCTCCATTGTTAGGACATGGCGGTGTTCAGGAGCAGAAACTGCTCTaGGTTCTGCCCTGTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: GQSVMVSASPLLGHGGVQEQKLL*VLPCHL Trigger: AAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTC...CTGAACACCGCCATGTCCTAACAATGGAGATGCAGACACCATCACTGACTGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | GAGGAAAGAAACAATTGTAGTGTGATGGGGTTCTGGGAGGAAAATGTCCAGCGACTCCCTCGGAGTCCCTaGCCCTTGGAGGCTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: EERNNCSVMGFWEENVQRLPRSP*PLEAFL Trigger: CAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAG...TCGCTGGACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS-3UTR CAA 90 bp | GGCTTATGCTTGGGGGTGGAGGAGATGAAAAGTAATGAACTAGCATTATCAGCTTGCTCCTTGTGCTGGTaGGCACGGCTGACCTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GLCLGVEEMKSNELALSACSLCW*ARLTCS Trigger: AGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCA...AGCTGATAATGCTAGTTCATTACTTTTCATCTCCTCCACCCCCAAGCATAAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS TCA 90 bp | CACTGCATATGGGATACACTTGACTTTGGCAGCCAGAGTGACAACTaGCAGATGTCGAAGCTTATTCTTCTGTGCGTCAGTCAGTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: HCIWDTLDFGSQSDN*QMSKLILLCVSQWG Trigger: CCCCCACTGACTGACGCACAGAAGAATAAGCTTCGACATCTGTCAGTTGTCACTCTGGCTGCCAAAGTCAAGTGTATCCCATATGCAGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
||
| CDS-3UTR CAA 90 bp | TGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTCTGGGCTGGCGCTGGTaGGTGCCAGAAGCTGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: CAFNVKSQVHYQHLPCDSLGWRW*VPEAGS Trigger: AGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAG...AGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | TGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTGATTCTGCCCCCTTAGCCGACTaGGCAAGGAGCAGAAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: CAFNVKSQVHYQHLPCDSAPLAD*ARSRNC Trigger: GCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGC...AGAATCACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS-3UTR CAA 90 bp | GTTTTATGTGCTTTCAATGTCAAAAGTCAAGTTCACTACCAACACCTCCCTTGTTTCTCCCCCTTGCCCTaGGAGGCTTTCTTGCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: VLCAFNVKSQVHYQHLPCFSPLP*EAFLLG Trigger: GCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAA...ACAAGGGAGGTGTTGGTAGTGAACTTGACTTTTGACATTGAAAGCACATAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS TCA 72 bp | CCACGCACCACTCTTGCAGGGTCTGGGCGATGGCACTaGGGTCCTGGCGCTGGATGTCCCGCCCGATGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PRTTLAGSGRWH*GPGAGCPARCC Trigger: ACAGCATCGGGCGGGACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTGGTGCGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS CAA 72 bp | GCGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: ALPRSPLPLEAF*LGWRWLVPEAG Trigger: ACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 72 bp | AGGGGCCTCCAGCACCTGGTGGATGAGTGTGGCCAGTaGCGCCCCCTTAGCCGACTTGGCAAGGAGCAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: RGLQHLVDECGQ*RPLSRLGKEQK Trigger: TTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGCGGCACTGGCCACACTCATCCACCAGGTGCTGGAGGCCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 ENSMUST00000148485.2 |
||
| CDS GCA 72 bp | CGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTaGTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTT | + |
|
Preference number: 6 (lower is better) Translates to: RSLGVPCPWRLS*WAGAGWCQKLV Trigger: AACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CCA 72 bp | ACAACCTCACAGCCCACGCACCACTCTTGCAGGGTCTaGGCGATGGCACTGAGGTCCTGGCGCTGGATGTCC | + |
|
Preference number: 6 (lower is better) Translates to: TTSQPTHHSCRV*AMALRSWRWMS Trigger: GGACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTGGTGCGTGGGCTGTGAGGTTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS TCA 72 bp | GGCCCAGCTGCTGCTCCTTGTGCTGGTTGGCACGGCTaGCCTGCTCTTCGATGCCCGACAACACAACCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: GPAAAPCAGWHG*PALRCPTTQPH Trigger: GTGAGGTTGTGTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS CCA 72 bp | CGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: RSPLPLEAFLLG*RWLVPEAGSLS Trigger: GCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CCA 72 bp | TCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTaGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: SLGVPCPWRLSC*AGAGWCQKLVL Trigger: GAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CAA 90 bp | CAAATCTTGGCGCTCCCTCGGAGTCCCTTGCCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: QILALPRSPLPLEAF*LGWRWLVPEAGSLS Trigger: GCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGCCAAGATTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS GCA 72 bp | GCCGCCCCCTTAGCCGACTTGGCAAGGAGCAGAAACTaGTCTTGGTTCTGCCCTGTCACCTTCACCTCCGCA | + |
|
Preference number: 6 (lower is better) Translates to: AAPLADLARSRN*SWFCPVTFTSA Trigger: TGCGGAGGTGAAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGCGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 ENSMUST00000148485.2 |
||
| CDS GCA 72 bp | AGCTGCTGCTCCTTGTGCTGGTTGGCACGGCTGACCTaGTCTTCGATGCCCGACAACACAACCTCACAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SCCSLCWLARLT*SSMPDNTTSQP Trigger: GGGCTGTGAGGTTGTGTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS GCA 72 bp | GCAACCTCACTTTCGATCTGCTGCTTCAGGCCCAGCTaGTGCTCCTTGTGCTGGTTGGCACGGCTGACCTGC | + |
|
Preference number: 6 (lower is better) Translates to: ATSLSICCFRPS*CSLCWLARLTC Trigger: GCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
||
| CDS CCA 72 bp | TTCTCCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTaGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FSPLPLEAFLLG*RWLVPEAGSLS Trigger: GCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 90 bp | AGCACCTGGTGGATGAGTGTGGCCAGTGCCGCCCCCTTAGCCGACTaGGCAAGGAGCAGAAACTGCTCTTGGTTCTGCCCTGTCACCTTC | + |
|
Preference number: 6 (lower is better) Translates to: STWWMSVASAAPLAD*ARSRNCSWFCPVTF Trigger: GAAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGCGGCACTGGCCACACTCATCCACCAGGTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 ENSMUST00000148485.2 |
||
| CDS CAA 90 bp | CGGAGTCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTaGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RSPLPLEAFLLGWRW*VPEAGSLSSVRCCS Trigger: TGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032220.15 |
||
| CDS CAA 72 bp | TGGATGAGTGTGGCCAGTGCCGCCCCCTTAGCCGACTaGGCAAGGAGCAGAAACTGCTCTTGGTTCTGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: WMSVASAAPLAD*ARSRNCSWFCP Trigger: AGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGCGGCACTGGCCACACTCATCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 ENSMUST00000148485.2 |
||
| CDS CAA 90 bp | TTCTCCCCCTTGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTaGGTGCCAGAAGCTGGTTCTCTCAGCTCTGTCAGGTGTTGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: FSPLPLEAFLLGWRW*VPEAGSLSSVRCCS Trigger: TGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 90 bp | GTGGACTGGGGATTAATCTTCTCCCCCTTGCCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGTTCTCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: VDWGLIFSPLPLEAF*LGWRWLVPEAGSLS Trigger: GCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCCCCAGTCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CCA 72 bp | TCAGCATACACAGCCTCGATCACAAGGTCTTCCAGCTaGCGCACGTTTCGAAGGGCAAGGGCCTCCAGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: SAYTASITRSSS*RTFRRARASSN Trigger: GTTGCTGGAGGCCCTTGCCCTTCGAAACGTGCGCCAGCTGGAAGACCTTGTGATCGAGGCTGTGTATGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
||
| CDS CAA 72 bp | GGATTAATCTTCTCCCCCTTGCCCTTGGAGGCTTTCTaGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: GLIFSPLPLEAF*LGWRWLVPEAG Trigger: ACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 72 bp | ACAGTGGACTGGGGATTAATCTTCTCCCCCTTGCCCTaGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: TVDWGLIFSPLP*EAFLLGWRWLV Trigger: CACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCCCCAGTCCACTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 72 bp | GGCTTTACAGTGGACTGGGGATTAATCTTCTCCCCCTaGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GFTVDWGLIFSP*PLEAFLLGWRW Trigger: CCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCCCCAGTCCACTGTAAAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 90 bp | CTTGGCTTTACAGTGGACTGGGGATTAATCTTCTCCCCCTTGCCCTaGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTGCCAGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LGFTVDWGLIFSPLP*EAFLLGWRWLVPEA Trigger: AGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCCCCAGTCCACTGTAAAGCCAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
||
| CDS CAA 90 bp | TTGGCACTTGGCTTTACAGTGGACTGGGGATTAATCTTCTCCCCCTaGCCCTTGGAGGCTTTCTTGCTGGGCTGGCGCTGGTTGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LALGFTVDWGLIFSP*PLEAFLLGWRWLVP Trigger: TGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGGGAGAAGATTAATCCCCAGTCCACTGTAAAGCCAAGTGCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112439.9 |
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| CDS CAA 72 bp | CCCCTTAGCCGACTTGGCAAGGAGCAGAAACTGCTCTaGGTTCTGCCCTGTCACCTTCACCTCCGCACTCAT | + |
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Preference number: 6 (lower is better) Translates to: PLSRLGKEQKLL*VLPCHLHLRTH Trigger: ATGAGTGCGGAGGTGAAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 ENSMUST00000148485.2 |
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| CDS GCA 72 bp | GCGCACGTTTCGAAGGGCAAGGGCCTCCAGCAACACTaGATATGGGATACACTTGACTTTGGCAGCCAGAGT | + |
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Preference number: 6 (lower is better) Translates to: AHVSKGKGLQQH*IWDTLDFGSQS Trigger: ACTCTGGCTGCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCTGGAGGCCCTTGCCCTTCGAAACGTGCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
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| CDS GCA 72 bp | GTTTTCTTAAGGTTGGCAACCTCACTTTCGATCTGCTaGTTCAGGCCCAGCTGCTGCTCCTTGTGCTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: VFLRLATSLSIC*FRPSCCSLCWL Trigger: CAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGTTGCCAACCTTAAGAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129976.8 |
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| CDS CCA 72 bp | GTTTCGAAGGGCAAGGGCCTCCAGCAACACTGCATATaGGATACACTTGACTTTGGCAGCCAGAGTGACAAC | + |
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Preference number: 6 (lower is better) Translates to: VSKGKGLQQHCI*DTLDFGSQSDN Trigger: GTTGTCACTCTGGCTGCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCTGGAGGCCCTTGCCCTTCGAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
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| CDS TCA 72 bp | TGGGATACACTTGACTTTGGCAGCCAGAGTGACAACTaGCAGATGTCGAAGCTTATTCTTCTGTGCGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: WDTLDFGSQSDN*QMSKLILLCVS Trigger: ACTGACGCACAGAAGAATAAGCTTCGACATCTGTCAGTTGTCACTCTGGCTGCCAAAGTCAAGTGTATCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032220.15 ENSMUST00000112439.9 ENSMUST00000129446.8 ENSMUST00000129976.8 |
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