RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COPS6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019494

Ensembl transcript IDs: ENSMUST00000019638.15, ENSMUST00000110951.8, ENSMUST00000132639.2

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ACCATCATCAGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTACGTCATTGCATTGCTaGGAGGGAACACAAAGAACC +
Preference number: 2 (lower is better)
Translates to: TIIRKTVPAFAGQCLVGRTSLHC*EGTQRT
Trigger: GGTTCTTTGTGTTCCCTCCCAGCAATGCAATGACGT...ACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCTGATGATGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR CAA 90 bp GAACCATCATCAGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTaGTCGGTCGTAGAGGACGTTGAACTTGTTCACAAACTGGTTCAT +
Preference number: 2 (lower is better)
Translates to: EPSSEKQSPHSPANA*SVVEDVELVHKLVH
Trigger: ATGAACCAGTTTGTGAACAAGTTCAACGTCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCTGATGATGGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR-3UTR TCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCCATGGAACAGCTGTCTaGGCCCCACACACCATCCCT +
Preference number: 2 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPHGTAV*APHTIP
Trigger: AGGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATG...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR TCA 90 bp AGGACGTTGAACTTGTTCACAAACTGGTTCATTGTGTTGCACGTTTTGGTGATGTGCCGAGGTAGGCCATaGGCCCCACGTCATTGCATT +
Preference number: 2 (lower is better)
Translates to: RTLNLFTNWFIVLHVLVMCRGRP*APRHCI
Trigger: AATGCAATGACGTGGGGCTCATGGCCTACCTCGGCA...CATCACCAAAACGTGCAACACAATGAACCAGTTTGTGAACAAGTTCAACGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR-3UTR CCA 90 bp AGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTAGAGGACGTAACTTGTTCACAAACTaGTTCATTGTGTTGCACGTT +
Preference number: 2 (lower is better)
Translates to: RKTVPAFAGQCLVGRRGRNLFTN*FIVLHV
Trigger: AACGTGCAACACAATGAACCAGTTTGTGAACAAGTT...ACGTCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR-3UTR TCA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAAAACCAGTGTGGTGCCTaGGAGGACAAAGCCACTGGA +
Preference number: 2 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKNQCGA*EDKATG
Trigger: TCCAGTGGCTTTGTCCTCTCAGGCACCACACTGGTT...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR CAA 90 bp GTGCTAGTCAATCTGGGAGATAGAAGGCCTTGGGACCACTGTTTCTaGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCCAC +
Preference number: 2 (lower is better)
Translates to: VLVNLGDRRPWDHCF*RCFQLWTFRLLDPH
Trigger: GTGGGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTCCCAAGGCCTTCTATCTCCCAGATTGACTAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR GCA 90 bp ACGTTGAACTTGTTCACAAACTGGTTCATTGTGTTGCACGTTTTGGTGATGGTGCCCACGTCATTGCATTaGTGGGAGGGAACACAAAGA +
Preference number: 2 (lower is better)
Translates to: TLNLFTNWFIVLHVLVMVPTSLH*WEGTQR
Trigger: TCTTTGTGTTCCCTCCCAGCAATGCAATGACGTGGG...CACCATCACCAAAACGTGCAACACAATGAACCAGTTTGTGAACAAGTTCAACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR-3UTR TCA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAACTTAAGAGTCCATGTTaGGAAACCAGTGTGGTGCCT +
Preference number: 2 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKLKSPC*ETSVVP
Trigger: AGGCACCACACTGGTTTCTCAACATGGACTCTTAAG...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR TCA 90 bp GGACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCTGTGGAGCTGTGACATaGATTGATCACAGAGCACAA +
Preference number: 2 (lower is better)
Translates to: GPLFLEMLPIMDISFVRPCGAVT*IDHRAQ
Trigger: TTGTGCTCTGTGATCAATTCATGTCACAGCTCCACA...GGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR CCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCTCTCTAAAGGGAATGTaGTACTCAGGTCCATGGAAC +
Preference number: 2 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPSLKGM*YSGPWN
Trigger: GTTCCATGGACCTGAGTACCACATTCCCTTTAGAGA...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR CCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCCCACAATTACAAAGATaGAATTCAGCTTCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPPQLQR*NSASLP
Trigger: GGGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGG...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR GCA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAAGGGCTGCTAAGGGGCTaGTCTTTTATTAATGAGTTT +
Preference number: 2 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKGLLRG*SFINEF
Trigger: AAACTCATTAATAAAAGAGCAGCCCCTTAGCAGCCC...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR CAA 90 bp AACCACAATTACAAAGATGGAATTCAGCTTCCCTCCCCTTCCTATTaGAGAAACATTTGCAGTGAAATTAAATTAGCCTGGGAAAGCAAT +
Preference number: 2 (lower is better)
Translates to: NHNYKDGIQLPSPSY*RNICSEIKLAWESN
Trigger: ATTGCTTTCCCAGGCTAATTTAATTTCACTGCAAATGTTTCTCAAATAGGAAGGGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR-3UTR CAA 90 bp ATCAGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTAGAGGACCCCACGTCATTGCATaGCTGGGAGGGAACACAAAG +
Preference number: 3 (lower is better)
Translates to: IRKTVPAFAGQCLVGRRGPHVIA*LGGNTK
Trigger: CTTTGTGTTCCCTCCCAGCAATGCAATGACGTGGGG...TCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR-3UTR CAA 90 bp GTTGAACTTGTTCACAAACTGGTTCATTGTGTTGCACGTTTTGGTGATGGTGCCATGAGCCCCACGTCATaGCATTGCTGGGAGGGAACA +
Preference number: 3 (lower is better)
Translates to: VELVHKLVHCVARFGDGAMSPTS*HCWEGT
Trigger: TGTTCCCTCCCAGCAATGCAATGACGTGGGGCTCAT...GGCACCATCACCAAAACGTGCAACACAATGAACCAGTTTGTGAACAAGTTCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR TCA 72 bp GGGAAAGCAATCTTTCTGTGGAGCTGTGACATGAATTaGTCACAGAGCACAAAAACTGGAAGCAAGCAGGTC +
Preference number: 3 (lower is better)
Translates to: GKAIFLWSCDMN*SQSTKTGSKQV
Trigger: GACCTGCTTGCTTCCAGTTTTTGTGCTCTGTGATCAATTCATGTCACAGCTCCACAGAAAGATTGCTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR TCA 72 bp AGCCTGGGAAAGCAATCTTTCTGTGGAGCTGTGACATaGATTGATCACAGAGCACAAAAACTGGAAGCAAGC +
Preference number: 3 (lower is better)
Translates to: SLGKQSFCGAVT*IDHRAQKLEAS
Trigger: GCTTGCTTCCAGTTTTTGTGCTCTGTGATCAATTCATGTCACAGCTCCACAGAAAGATTGCTTTCCCAGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR CCA 72 bp TACTATGTGCTAGTCAATCTGGGAGATAGAAGGCCTTaGGACCACTGTTTCTTGAGATGCTTCCAATTATGG +
Preference number: 3 (lower is better)
Translates to: YYVLVNLGDRRP*DHCFLRCFQLW
Trigger: CCATAATTGGAAGCATCTCAAGAAACAGTGGTCCCAAGGCCTTCTATCTCCCAGATTGACTAGCACATAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR TCA 72 bp AAATTAGCCTGGGAAAGCAATCTTTCTGTGGAGCTGTaGCATGAATTGATCACAGAGCACAAAAACTGGAAG +
Preference number: 3 (lower is better)
Translates to: KLAWESNLSVEL*HELITEHKNWK
Trigger: CTTCCAGTTTTTGTGCTCTGTGATCAATTCATGTCACAGCTCCACAGAAAGATTGCTTTCCCAGGCTAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp GGTGATGGTGCCGAGGTAGGCCATGAGCCCCACGTCATTGCATTGCTGGGAGGGTGGAGTTCTCCCCACTaGCTGTTGCTGTCATCCGGG +
Preference number: 4 (lower is better)
Translates to: GDGAEVGHEPHVIALLGGWSSPH*LLLSSG
Trigger: CCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCA...CCCTCCCAGCAATGCAATGACGTGGGGCTCATGGCCTACCTCGGCACCATCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR CCA 90 bp AGTGTGGTGCCTGAGAGGACAAAGCCACTGGAAGGGCTGCTAAGGGGCTGCTCTATAGGCCGCCCCTCCTaGGAGCGCATGCGGATCCAA +
Preference number: 4 (lower is better)
Translates to: SVVPERTKPLEGLLRGCSIGRPS*ERMRIQ
Trigger: TTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTAT...AGAGCAGCCCCTTAGCAGCCCTTCCAGTGGCTTTGTCCTCTCAGGCACCACACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCCTCCCCACTGCCTGTTaGTGTCATCCGGGCCACGTG +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPLPTAC*CHPGHV
Trigger: CACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAG...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTAGAGGACGTCTCCCCACTGCCTGTTaGTGTCATCCGGGCCACGTG +
Preference number: 4 (lower is better)
Translates to: RKTVPAFAGQCLVGRRGRLPTAC*CHPGHV
Trigger: CACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAG...ACGTCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
3UTR CAA 72 bp GGTGCCGAGGTAGGCCATGAGCCCCACGTCATTGCATaGCTGGGAGGGAACACAAAGAACCAGTTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: GAEVGHEPHVIA*LGGNTKNQFPR
Trigger: CCTGGGGAACTGGTTCTTTGTGTTCCCTCCCAGCAATGCAATGACGTGGGGCTCATGGCCTACCTCGGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR TCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCTGCCGAGGTAGGCCATaGGCCCCACGTCATTGCATT +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPCRGRP*APRHCI
Trigger: AATGCAATGACGTGGGGCTCATGGCCTACCTCGGCA...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCTGGAGTTCTCCCCACTaGCTGTTGCTGTCATCCGGG +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPWSSPH*LLLSSG
Trigger: CCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCA...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCGCATTCGCCGGCCAATaGCTTGTCGGTCGTAGAGGA +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPAFAGQ*LVGRRG
Trigger: TCCTCTACGACCGACAAGGCATTGGCCGGCGAATGC...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATATAGGCCGCCCCTCCTaGGAGCGCATGCGGATCCAA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHIGRPS*ERMRIQ
Trigger: TTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTAT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCGGTGTTCAGCCACAGTaGAGTTCTCCCCACTGCCTG +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPGVQPQ*SSPHCL
Trigger: CAGGCAGTGGGGAGAACTCCACTGTGGCTGAACACC...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp AGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTAGAGGACGTGGTGTTCAGCCACAGTaGAGTTCTCCCCACTGCCTG +
Preference number: 4 (lower is better)
Translates to: RKTVPAFAGQCLVGRRGRGVQPQ*SSPHCL
Trigger: CAGGCAGTGGGGAGAACTCCACTGTGGCTGAACACC...ACGTCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR TCA 90 bp AGTGTGGTGCCTGAGAGGACAAAGCCACTGGAAGGGCTGCTAAGGGGCTGCTCTAGGATGACAAGGGGATaGAGAGCGACGGAAACACTC +
Preference number: 4 (lower is better)
Translates to: SVVPERTKPLEGLLRGCSRMTRG*RATETL
Trigger: GAGTGTTTCCGTCGCTCTTCATCCCCTTGTCATCCT...AGAGCAGCCCCTTAGCAGCCCTTCCAGTGGCTTTGTCCTCTCAGGCACCACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCTCCTGGGAGCGCATaGGGATCCAATGGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHPPGSA*GSNGLR
Trigger: TCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGG...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATGCATTCGCCGGCCAATaGCTTGTCGGTCGTAGAGGA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHAFAGQ*LVGRRG
Trigger: TCCTCTACGACCGACAAGGCATTGGCCGGCGAATGC...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCTCACACACCTGCTTATaGACGTGGATGTCTGAGGGG +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPSHTCL*TWMSEG
Trigger: CCCCTCAGACATCCACGTCCATAAGCAGGTGTGTGA...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCTTGATGGCACTATGCTaGGCTATCAGGTGTTCAGCC +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPLMALC*AIRCSA
Trigger: GGCTGAACACCTGATAGCTCAGCATAGTGCCATCAA...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATTGTTGCACGTTTTGGTaGTGGTGCCGAGGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHCCTFW*WCRGRP
Trigger: TGGCCTACCTCGGCACCATCACCAAAACGTGCAACA...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATATATTTCGCCCCTCCTaGTTCCCGATCAGAGCCCCA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHIFRPS*FPIRAP
Trigger: TGGGGCTCTGATCGGGAAGCAGGAGGGGCGAAATAT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATAGGATGACAAGGGGATaGAGAGCGACGGAAACACTC +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHRMTRG*RATETL
Trigger: GAGTGTTTCCGTCGCTCTTCATCCCCTTGTCATCCT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp ATCAGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTTGTCGGTCGTAGAGGATGGCCAGAGTGTAAGTaGGCTCAGCAAACAGCATTG +
Preference number: 4 (lower is better)
Translates to: IRKTVPAFAGQCLVGRRGWPECK*AQQTAL
Trigger: CAATGCTGTTTGCTGAGCTCACTTACACTCTGGCCA...TCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR TCA 90 bp GTAGGCCATGAGCCCCACGTCATTGCATTGCTGGGAGGGAACACAAAGAACCAGTTGATGGCACTATGCTaGGCTATCAGGTGTTCAGCC +
Preference number: 4 (lower is better)
Translates to: VGHEPHVIALLGGNTKNQLMALC*AIRCSA
Trigger: GGCTGAACACCTGATAGCTCAGCATAGTGCCATCAA...CTGGTTCTTTGTGTTCCCTCCCAGCAATGCAATGACGTGGGGCTCATGGCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR TCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATGGCTGTGCAGCATCTTaGTGGCACTATGCTGAGCTA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHGCAAS*WHYAEL
Trigger: TAGCTCAGCATAGTGCCATCAAGATGCTGCACAGCC...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp GTAGGCCATGAGCCCCACGTCATTGCATTGCTGGGAGGGAACACAAAGAACCAGGAAGGGAACCTCTCCTaGTTCAGAGGCCTTGACATA +
Preference number: 4 (lower is better)
Translates to: VGHEPHVIALLGGNTKNQEGNLS*FRGLDI
Trigger: TATGTCAAGGCCTCTGAAGCAGGAGAGGTTCCCTTC...CTGGTTCTTTGTGTTCCCTCCCAGCAATGCAATGACGTGGGGCTCATGGCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR CCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCCGCATGCGGATCCAATaGTCTGAGATGTTAAGGATG +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPRMRIQ*SEMLRM
Trigger: CATCCTTAACATCTCAGACCATTGGATCCGCATGCG...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AGGGAACACAAAGAACCAGTTCCCCAGGGGTCCCTCGTATTAGCCAGTGACACTAGCTTCACACGGCTGTaGAGCATCTTGATGGCACTA +
Preference number: 4 (lower is better)
Translates to: REHKEPVPQGSLVLASDTSFTRL*SILMAL
Trigger: TAGTGCCATCAAGATGCTGCACAGCCGTGTGAAGCT...AGTGTCACTGGCTAATACGAGGGACCCCTGGGGAACTGGTTCTTTGTGTTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR GCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATGAAGGGAACCTCTCCTaGTTCAGAGGCCTTGACATA +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHEGNLS*FRGLDI
Trigger: TATGTCAAGGCCTCTGAAGCAGGAGAGGTTCCCTTC...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATGCGGATCCAATGGTCTaGGATGTTAAGGATGACAAG +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHADPMV*DVKDDK
Trigger: CTTGTCATCCTTAACATCTCAGACCATTGGATCCGC...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
3UTR CAA 72 bp TCAGAAAAACAGTCCCCGCATTCGCCGGCCAATGCCTaGTCGGTCGTAGAGGACGTTGAACTTGTTCACAAA +
Preference number: 4 (lower is better)
Translates to: SEKQSPHSPANA*SVVEDVELVHK
Trigger: TTTGTGAACAAGTTCAACGTCCTCTACGACCGACAAGGCATTGGCCGGCGAATGCGGGGACTGTTTTTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR GCA 90 bp GGACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCACGCTGGGGACTGCTaGATCCACTTCCATGCCGCT +
Preference number: 4 (lower is better)
Translates to: GPLFLEMLPIMDISFVRPHAGDC*IHFHAA
Trigger: AGCGGCATGGAAGTGGATGCAGCAGTCCCCAGCGTG...GGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATACAGGAAGATCTGTGTaGTTGGTCATAGGGTTCAAC +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHTGRSV*LVIGFN
Trigger: GTTGAACCCTATGACCAAGCACACAGATCTTCCTGT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AAACAAGGACTTGAGATAACCACAATTACAAAGATGGAATTCAGCTTCCCTCCCCTCCCCACTGCCTGTTaGTGTCATCCGGGCCACGTG +
Preference number: 4 (lower is better)
Translates to: KQGLEITTITKMEFSFPPLPTAC*CHPGHV
Trigger: CACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAG...GGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGGTTATCTCAAGTCCTTGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR TCA 90 bp GAACTTGTTCACAAACTGGTTCATTGTGTTGCACGTTTTGGTGATGGTGCCGAGGGCTGTGCAGCATCTTaGTGGCACTATGCTGAGCTA +
Preference number: 4 (lower is better)
Translates to: ELVHKLVHCVARFGDGAEGCAAS*WHYAEL
Trigger: TAGCTCAGCATAGTGCCATCAAGATGCTGCACAGCC...CTCGGCACCATCACCAAAACGTGCAACACAATGAACCAGTTTGTGAACAAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132639.2
CDS-3UTR GCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCCCTCCTGGGAGCGCATaGGGATCCAATGGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPPPGSA*GSNGLR
Trigger: TCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGG...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTTGGAGTTCTCCCCACTaGCTGTTGCTGTCATCCGGG +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSWSSPH*LLLSSG
Trigger: CCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCA...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGGTGTTCAGCCACAGTaGAGTTCTCCCCACTGCCTG +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSGVQPQ*SSPHCL
Trigger: CAGGCAGTGGGGAGAACTCCACTGTGGCTGAACACC...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp GGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCAACTTGTTCACAAACTaGTTCATTGTGTTGCACGTT +
Preference number: 4 (lower is better)
Translates to: GMWYSGPWNSCLSPTHHPNLFTN*FIVLHV
Trigger: AACGTGCAACACAATGAACCAGTTTGTGAACAAGTT...GGGATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp AAACAAGGACTTGAGATAACCACAATTACAAAGATGGAATTCAGCTTCCCTCCCTGCCGAGGTAGGCCATaGGCCCCACGTCATTGCATT +
Preference number: 4 (lower is better)
Translates to: KQGLEITTITKMEFSFPPCRGRP*APRHCI
Trigger: AATGCAATGACGTGGGGCTCATGGCCTACCTCGGCA...GGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGGTTATCTCAAGTCCTTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp AAACAAGGACTTGAGATAACCACAATTACAAAGATGGAATTCAGCTTCCCTCCCCATCACGCTGGGGACTaGTGCATCCACTTCCATGCC +
Preference number: 4 (lower is better)
Translates to: KQGLEITTITKMEFSFPPHHAGD*CIHFHA
Trigger: GGCATGGAAGTGGATGCAGCAGTCCCCAGCGTGATG...GGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGGTTATCTCAAGTCCTTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR TCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCGGCTGTGCAGCATCTTaGTGGCACTATGCTGAGCTA +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPGCAAS*WHYAEL
Trigger: TAGCTCAGCATAGTGCCATCAAGATGCTGCACAGCC...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTTTCTCTTCCACGGTGTaGGACAGCAGCTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSFSSTV*DSSSKE
Trigger: CTCCTTTGAGCTGCTGTCCCACACCGTGGAAGAGAA...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAAACCTGCTTATGGACGTaGATGTCTGAGGGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKTCLWT*MSEGSG
Trigger: ACCTGACCCCTCAGACATCCACGTCCATAAGCAGGT...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTACCTGCTTATGGACGTaGATGTCTGAGGGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSTCLWT*MSEGSG
Trigger: ACCTGACCCCTCAGACATCCACGTCCATAAGCAGGT...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CCA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATAACTTGTTCACAAACTaGTTCATTGTGTTGCACGTT +
Preference number: 4 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHNLFTN*FIVLHV
Trigger: AACGTGCAACACAATGAACCAGTTTGTGAACAAGTT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCTGGCCAGAGTGTAAGTaGGCTCAGCAAACAGCATTG +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPWPECK*AQQTAL
Trigger: CAATGCTGTTTGCTGAGCTCACTTACACTCTGGCCA...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR TCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTTGGCCAGAGTGTAAGTaGGCTCAGCAAACAGCATTG +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSWPECK*AQQTAL
Trigger: CAATGCTGTTTGCTGAGCTCACTTACACTCTGGCCA...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAATTGATGGCACTATGCTaGGCTATCAGGTGTTCAGCC +
Preference number: 4 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKLMALC*AIRCSA
Trigger: GGCTGAACACCTGATAGCTCAGCATAGTGCCATCAA...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCAGCTTCACACGGCTGTaGAGCATCTTGATGGCACTA +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPSFTRL*SILMAL
Trigger: TAGTGCCATCAAGATGCTGCACAGCCGTGTGAAGCT...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR GCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTAGCTTCACACGGCTGTaGAGCATCTTGATGGCACTA +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSSFTRL*SILMAL
Trigger: TAGTGCCATCAAGATGCTGCACAGCCGTGTGAAGCT...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCGAAGGGAACCTCTCCTaGTTCAGAGGCCTTGACATA +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPEGNLS*FRGLDI
Trigger: TATGTCAAGGCCTCTGAAGCAGGAGAGGTTCCCTTC...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CCA 90 bp AGGTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTACGCATGCGGATCCAATaGTCTGAGATGTTAAGGATG +
Preference number: 4 (lower is better)
Translates to: RSSYHILSTSTRGHLESLRMRIQ*SEMLRM
Trigger: CATCCTTAACATCTCAGACCATTGGATCCGCATGCG...TAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR TCA 90 bp GACCACTGTTTCTTGAGATGCTTCCAATTATGGACATTTCGTTTGTTAGACCCCGCGGATCCAATGGTCTaGGATGTTAAGGATGACAAG +
Preference number: 4 (lower is better)
Translates to: DHCFLRCFQLWTFRLLDPADPMV*DVKDDK
Trigger: CTTGTCATCCTTAACATCTCAGACCATTGGATCCGC...GGGGTCTAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR TCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTCAGACTCAAAAACGCTaGCAGGAAGATCTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSQTQKR*QEDLCA
Trigger: AGCACACAGATCTTCCTGTCAGCGTTTTTGAGTCTG...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR TCA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGGTCGTAGAGGACGTTaGACTTGTTCACAAACTGGT +
Preference number: 4 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSGRRGR*TCSQTG
Trigger: ACCAGTTTGTGAACAAGTTCAACGTCCTCTACGACC...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR GCA 90 bp AGGTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAACAGGAAGATCTGTGTaGTTGGTCATAGGGTTCAAC +
Preference number: 4 (lower is better)
Translates to: RSSYHILSTSTRGHLESLTGRSV*LVIGFN
Trigger: GTTGAACCCTATGACCAAGCACACAGATCTTCCTGT...TAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
3UTR CAA 72 bp AATCTGGGAGATAGAAGGCCTTGGGACCACTGTTTCTaGAGATGCTTCCAATTATGGACATTTCGTTTGTTA +
Preference number: 4 (lower is better)
Translates to: NLGDRRPWDHCF*RCFQLWTFRLL
Trigger: TAACAAACGAAATGTCCATAATTGGAAGCATCTCAAGAAACAGTGGTCCCAAGGCCTTCTATCTCCCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 90 bp GGAAACACTCCCAGTCACTCCGGAGGCCATCACGCTGGGGACTGCTaGATCCACTTCCATGCCGCTGCTGCCTCCGCTCCCATTCGCCCC +
Preference number: 5 (lower is better)
Translates to: GNTPSHSGGHHAGDC*IHFHAAAASAPIRP
Trigger: GGGGCGAATGGGAGCGGAGGCAGCAGCGGCATGGAAGTGGATGCAGCAGTCCCCAGCGTGATGGCCTCCGGAGTGACTGGGAGTGTTTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 90 bp GACGGAAACACTCCCAGTCACTCCGGAGGCCATCACGCTGGGGACTaGTGCATCCACTTCCATGCCGCTGCTGCCTCCGCTCCCATTCGC +
Preference number: 5 (lower is better)
Translates to: DGNTPSHSGGHHAGD*CIHFHAAAASAPIR
Trigger: GCGAATGGGAGCGGAGGCAGCAGCGGCATGGAAGTGGATGCAGCAGTCCCCAGCGTGATGGCCTCCGGAGTGACTGGGAGTGTTTCCGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 90 bp AGCTATCAGGTGTTCAGCCACAGTGGAGTTCTCCCCACTGCCTGTTaGTGTCATCCGGGCCACGTGGTCTACACCGATCCGTTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: SYQVFSHSGVLPTAC*CHPGHVVYTDPFSF
Trigger: GAAGCTGAACGGATCGGTGTAGACCACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCACTGTGGCTGAACACCTGATAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS CCA 90 bp TGCTTCCCGATCAGAGCCCCAATCACCTGCATAGGCCGCCCCTCCTaGGAGCGCATGCGGATCCAATGGTCTGAGATGTTAAGGATGACA +
Preference number: 5 (lower is better)
Translates to: CFPIRAPITCIGRPS*ERMRIQWSEMLRMT
Trigger: TGTCATCCTTAACATCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTATGCAGGTGATTGGGGCTCTGATCGGGAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS TCA 90 bp CTGCATAGGCCGCCCCTCCTGGGAGCGCATGCGGATCCAATGGTCTaGGATGTTAAGGATGACAAGGGGATGAAGAGCGACGGAAACACT +
Preference number: 5 (lower is better)
Translates to: LHRPPLLGAHADPMV*DVKDDKGMKSDGNT
Trigger: AGTGTTTCCGTCGCTCTTCATCCCCTTGTCATCCTTAACATCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTATGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATTCGCCGGCCAATGCCTaGTCGGTCGTAGAGGACGTT +
Preference number: 5 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHSPANA*SVVEDV
Trigger: AACGTCCTCTACGACCGACAAGGCATTGGCCGGCGA...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS TCA 90 bp CGCATGCGGATCCAATGGTCTGAGATGTTAAGGATGACAAGGGGATaGAGAGCGACGGAAACACTCCCAGTCACTCCGGAGGCCATCACG +
Preference number: 5 (lower is better)
Translates to: RMRIQWSEMLRMTRG*RATETLPVTPEAIT
Trigger: CGTGATGGCCTCCGGAGTGACTGGGAGTGTTTCCGTCGCTCTTCATCCCCTTGTCATCCTTAACATCTCAGACCATTGGATCCGCATGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS TCA 90 bp AAAATGAGCTTCACACGGCTGTGCAGCATCTTGATGGCACTATGCTaGGCTATCAGGTGTTCAGCCACAGTGGAGTTCTCCCCACTGCCT +
Preference number: 5 (lower is better)
Translates to: KMSFTRLCSILMALC*AIRCSATVEFSPLP
Trigger: AGGCAGTGGGGAGAACTCCACTGTGGCTGAACACCTGATAGCTCAGCATAGTGCCATCAAGATGCTGCACAGCCGTGTGAAGCTCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS-3UTR CAA 90 bp AGGTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTATCTCCCCACTGCCTGTaGCTGTCATCCGGGCCACGT +
Preference number: 5 (lower is better)
Translates to: RSSYHILSTSTRGHLESLSPHCL*LSSGPR
Trigger: ACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAGA...TAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CAA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATGGAAGATCTGTGTGCTaGGTCATAGGGTTCAACTTC +
Preference number: 5 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHGRSVC*VIGFNF
Trigger: GAAGTTGAACCCTATGACCAAGCACACAGATCTTCC...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATAACTGGTTCATTGTGTaGCACGTTTTGGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHNWFIV*HVLVMV
Trigger: CACCATCACCAAAACGTGCAACACAATGAACCAGTT...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp AAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTGAGCCCCACACACCATCCCCACGTCATTGCATaGATCATAAAAGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: KGMWYSGPWNSCLSPTHHPHVIA*IIKVCL
Trigger: AAGACAGACTTTTATGATCAATGCAATGACGTGGGG...ATGGTGTGTGGGGCTCAGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp GTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTAAAGGAAGATCTGTGTGCTaGGTCATAGGGTTCAACTTC +
Preference number: 5 (lower is better)
Translates to: VVLSHFVYFNKGSPRVIKGRSVC*VIGFNF
Trigger: GAAGTTGAACCCTATGACCAAGCACACAGATCTTCC...TTTAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CAA 90 bp AGGTCGTCCTATCACATTTTGTCTACTTCAACAAGGGGTCACCTCGAGTCATTACCCCACGTCATTGCATaGATCATAAAAGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: RSSYHILSTSTRGHLESLPHVIA*IIKVCL
Trigger: AAGACAGACTTTTATGATCAATGCAATGACGTGGGG...TAATGACTCGAGGTGACCCCTTGTTGAAGTAGACAAAATGTGATAGGACGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS-3UTR CAA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTAACTGGTTCATTGTGTaGCACGTTTTGGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSNWFIV*HVLVMV
Trigger: CACCATCACCAAAACGTGCAACACAATGAACCAGTT...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp TTAATGAGTTTCTCTAAAGGGAATGTGGTACTCAGGTCCATGGAACAGCTGTCTAGAAACTCCAGCTCCTaGAAAACCTGTTTAAACTGC +
Preference number: 5 (lower is better)
Translates to: LMSFSKGNVVLRSMEQLSRNSSS*KTCLNC
Trigger: GCAGTTTAAACAGGTTTTCAAGGAGCTGGAGTTTCT...AGACAGCTGTTCCATGGACCTGAGTACCACATTCCCTTTAGAGAAACTCATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS-3UTR CAA 90 bp AAACAAGGACTTGAGATAACCACAATTACAAAGATGGAATTCAGCTTCCCTCCCAGAAACTCCAGCTCCTaGAAAACCTGTTTAAACTGC +
Preference number: 5 (lower is better)
Translates to: KQGLEITTITKMEFSFPPRNSSS*KTCLNC
Trigger: GCAGTTTAAACAGGTTTTCAAGGAGCTGGAGTTTCT...GGGAGGGAAGCTGAATTCCATCTTTGTAATTGTGGTTATCTCAAGTCCTTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 72 bp AGGCCATCACGCTGGGGACTGCTGCATCCACTTCCATaGCGCTGCTGCCTCCGCTCCCATTCGCCCCCGCCG +
Preference number: 6 (lower is better)
Translates to: RPSRWGLLHPLP*RCCLRSHSPPP
Trigger: CGGCGGGGGCGAATGGGAGCGGAGGCAGCAGCGGCATGGAAGTGGATGCAGCAGTCCCCAGCGTGATGGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 72 bp CCCAGTCACTCCGGAGGCCATCACGCTGGGGACTGCTaGATCCACTTCCATGCCGCTGCTGCCTCCGCTCCC +
Preference number: 6 (lower is better)
Translates to: PSHSGGHHAGDC*IHFHAAAASAP
Trigger: GGGAGCGGAGGCAGCAGCGGCATGGAAGTGGATGCAGCAGTCCCCAGCGTGATGGCCTCCGGAGTGACTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019638.15
CDS GCA 72 bp GTGTTCAGCCACAGTGGAGTTCTCCCCACTGCCTGTTaGTGTCATCCGGGCCACGTGGTCTACACCGATCCG +
Preference number: 6 (lower is better)
Translates to: VFSHSGVLPTAC*CHPGHVVYTDP
Trigger: CGGATCGGTGTAGACCACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCACTGTGGCTGAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS CCA 72 bp TTCTCCCCACTGCCTGTTGCTGTCATCCGGGCCACGTaGTCTACACCGATCCGTTCAGCTTCCTCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: FSPLPVAVIRAT*STPIRSASSVA
Trigger: GGCCACTGAGGAAGCTGAACGGATCGGTGTAGACCACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS CAA 90 bp GAGCTATCAGGTGTTCAGCCACAGTGGAGTTCTCCCCACTGCCTGTaGCTGTCATCCGGGCCACGTGGTCTACACCGATCCGTTCAGCTT +
Preference number: 6 (lower is better)
Translates to: ELSGVQPQWSSPHCL*LSSGPRGLHRSVQL
Trigger: AAGCTGAACGGATCGGTGTAGACCACGTGGCCCGGATGACAGCAACAGGCAGTGGGGAGAACTCCACTGTGGCTGAACACCTGATAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS TCA 72 bp CCGCCCCTCCTGGGAGCGCATGCGGATCCAATGGTCTaGGATGTTAAGGATGACAAGGGGATGAAGAGCGAC +
Preference number: 6 (lower is better)
Translates to: PPLLGAHADPMV*DVKDDKGMKSD
Trigger: GTCGCTCTTCATCCCCTTGTCATCCTTAACATCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGGGGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS CCA 72 bp ATCAGAGCCCCAATCACCTGCATAGGCCGCCCCTCCTaGGAGCGCATGCGGATCCAATGGTCTGAGATGTTA +
Preference number: 6 (lower is better)
Translates to: IRAPITCIGRPS*ERMRIQWSEML
Trigger: TAACATCTCAGACCATTGGATCCGCATGCGCTCCCAGGAGGGGCGGCCTATGCAGGTGATTGGGGCTCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS TCA 72 bp TTCACACGGCTGTGCAGCATCTTGATGGCACTATGCTaGGCTATCAGGTGTTCAGCCACAGTGGAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: FTRLCSILMALC*AIRCSATVEFS
Trigger: GGAGAACTCCACTGTGGCTGAACACCTGATAGCTCAGCATAGTGCCATCAAGATGCTGCACAGCCGTGTGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
ENSMUST00000132639.2
CDS GCA 72 bp TCAAAGGAGTTCATCACTTCGATATTTCGCCCCTCCTaGTTCCCGATCAGAGCCCCAATCACCTGCATAGGC +
Preference number: 6 (lower is better)
Translates to: SKEFITSIFRPS*FPIRAPITCIG
Trigger: GCCTATGCAGGTGATTGGGGCTCTGATCGGGAAGCAGGAGGGGCGAAATATCGAAGTGATGAACTCCTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8
CDS TCA 72 bp ATCCAATGGTCTGAGATGTTAAGGATGACAAGGGGATaGAGAGCGACGGAAACACTCCCAGTCACTCCGGAG +
Preference number: 6 (lower is better)
Translates to: IQWSEMLRMTRG*RATETLPVTPE
Trigger: CTCCGGAGTGACTGGGAGTGTTTCCGTCGCTCTTCATCCCCTTGTCATCCTTAACATCTCAGACCATTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019638.15
ENSMUST00000110951.8