Pregenerated sensors for COPS5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025917Ensembl transcript IDs: ENSMUST00000027050.10, ENSMUST00000186528.7, ENSMUST00000190155.7
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAACTAAGCTGCCACGTCCCAGTTaGGCTTCCGACTGCTCTAAC | + |
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Preference number: 2 (lower is better) Translates to: ELLFLPHTSFEKYLVVTKLPRPS*ASDCSN Trigger: GTTAGAGCAGTCGGAAGCCCAACTGGGACGTGGCAG...CTTAGTTACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| 3UTR-3UTR CCA 90 bp | TTTACTCGAGTTTCTGTGCCCTCTACAGGCAAAGCGAAACTGTCCATGATGATCAGTTGCCTCCTGACCTaGCATGCATCACCATTTTCA | + |
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Preference number: 2 (lower is better) Translates to: FTRVSVPSTGKAKLSMMISCLLT*HASPFS Trigger: TGAAAATGGTGATGCATGCCAGGTCAGGAGGCAACT...GATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186528.7 |
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| 3UTR-3UTR GCA 90 bp | GAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAACTAAGGTTTGTCTTCCGACTTaGGGTCATGTGTTTCTAAGC | + |
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Preference number: 2 (lower is better) Translates to: ELLFLPHTSFEKYLVVTKVCLPT*GHVFLS Trigger: GCTTAGAAACACATGACCGCAAGTCGGAAGACAAAC...CTTAGTTACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| 3UTR-3UTR CCA 90 bp | TTTGGATATGTCCTAAAGGCGCCAAGATTCACTTTTCCTGCAGAGATTGTTCTGCACCACTGCTACAAATaGTTCTTGAAACTGCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: FGYVLKAPRFTFPAEIVLHHCYK*FLKLLV Trigger: AACCAGCAGTTTCAAGAACCATTTGTAGCAGTGGTG...CAGAACAATCTCTGCAGGAAAAGTGAATCTTGGCGCCTTTAGGACATATCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186528.7 |
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| 3UTR-3UTR GCA 90 bp | TGCTACAAATGGTTCTTGAAACTGCTGGTTCAGCATCTGTGTACTAACATCAATGGCATTTTCTATGTATaGAGCCATATACTCATACGC | + |
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Preference number: 2 (lower is better) Translates to: CYKWFLKLLVQHLCTNINGIFYV*SHILIR Trigger: GCGTATGAGTATATGGCTGCATACATAGAAAATGCC...ATTGATGTTAGTACACAGATGCTGAACCAGCAGTTTCAAGAACCATTTGTAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186528.7 |
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| 3UTR-3UTR TCA 90 bp | AGGACAATTTCACGTGATAGTTTTATTACAGTGCTAATACTCAGGACACCACACGTTAAAAGTGTTACTTaGGCTTCTTTTCCTTCCACA | + |
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Preference number: 2 (lower is better) Translates to: RTISRDSFITVLILRTPHVKSVT*ASFPST Trigger: TGTGGAAGGAAAAGAAGCTCAAGTAACACTTTTAAC...GTGTGGTGTCCTGAGTATTAGCACTGTAATAAAACTATCACGTGAAATTGTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| 3UTR TCA 72 bp | CTTCCGACTTGCGGTCATGTGTTTCTAAGCCCAACATaGAACTGCCACGTCCCAGTTGGGCTTCCGACTGCT | + |
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Preference number: 3 (lower is better) Translates to: LPTCGHVFLSPT*NCHVPVGLPTA Trigger: AGCAGTCGGAAGCCCAACTGGGACGTGGCAGTTTCATGTTGGGCTTAGAAACACATGACCGCAAGTCGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| 3UTR TCA 72 bp | TCTATGTATGCAGCCATATACTCATACGCAGCAGCTTaGGCATTTACTCGAGTTTCTGTGCCCTCTACAGGC | + |
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Preference number: 3 (lower is better) Translates to: SMYAAIYSYAAA*AFTRVSVPSTG Trigger: GCCTGTAGAGGGCACAGAAACTCGAGTAAATGCTCAAGCTGCTGCGTATGAGTATATGGCTGCATACATAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186528.7 |
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| CDS-3UTR CCA 90 bp | CAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGAGCCTGCCACGTCCCAGTTaGGCTTCCGACTGCTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: QDLNTIDLVSLFPPINKSLPRPS*ASDCSN Trigger: GTTAGAGCAGTCGGAAGCCCAACTGGGACGTGGCAG...GCTCTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR GCA 90 bp | GAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAACTAAGTTACTCGAGTTTCTGTaGCCTCTACAGGCAAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: ELLFLPHTSFEKYLVVTKLLEFL*PLQAKR Trigger: TCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAA...CTTAGTTACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| CDS-3UTR TCA 90 bp | GAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAACTAAGTCATACGCAGCAGCTTaGGCATTTACTCGAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: ELLFLPHTSFEKYLVVTKSYAAA*AFTRVS Trigger: AGAAACTCGAGTAAATGCTCAAGCTGCTGCGTATGA...CTTAGTTACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| CDS-3UTR CCA 90 bp | TTACTTGAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAAGGTTTGTAGCCCTTTaGATATGTCCTAAAGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: LLELLFLPHTSFEKYLVVRFVAL*ICPKGA Trigger: GGCGCCTTTAGGACATATCCAAAGGGCTACAAACCT...TACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTCAAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CCA 90 bp | GAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAACTAAGAGAGATTGTTCTGGTTaGATCAATCACCACTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: ELLFLPHTSFEKYLVVTKRDCSG*INHHCY Trigger: GTAGCAGTGGTGATTGATCCAACCAGAACAATCTCT...CTTAGTTACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGTTACTCGAGTTTCTGTaGCCTCTACAGGCAAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: RQDLNTIDLVSLFPPINKLLEFL*PLQAKR Trigger: TCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAA...CTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR GCA 90 bp | AATAGACTGTCAAGAGAAGGCACAAGAAAAACTGACAAGTTTGTGACCATGGTGGTTTGTCTTCCGACTTaGGGTCATGTGTTTCTAAGC | + |
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Preference number: 4 (lower is better) Translates to: NRLSREGTRKTDKFVTMVVCLPT*GHVFLS Trigger: GCTTAGAAACACATGACCGCAAGTCGGAAGACAAAC...CACCATGGTCACAAACTTGTCAGTTTTTCTTGTGCCTTCTCTTGACAGTCTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CCA 90 bp | AGGACAATTTCACGTGATAGTTTTATTACAGTGCTAATACTCAGGACACCACACAGTTGCCTCCTGACCTaGCATGCATCACCATTTTCA | + |
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Preference number: 4 (lower is better) Translates to: RTISRDSFITVLILRTPHSCLLT*HASPFS Trigger: TGAAAATGGTGATGCATGCCAGGTCAGGAGGCAACT...GTGTGGTGTCCTGAGTATTAGCACTGTAATAAAACTATCACGTGAAATTGTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CCA 90 bp | ATTAGTAAGCAAGCTAGAGGAACTCAGGGTATTCACCCAGTATTTATTCCACAAAGTTGCCTCCTGACCTaGCATGCATCACCATTTTCA | + |
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Preference number: 4 (lower is better) Translates to: ISKQARGTQGIHPVFIPQSCLLT*HASPFS Trigger: TGAAAATGGTGATGCATGCCAGGTCAGGAGGCAACT...TTGTGGAATAAATACTGGGTGAATACCCTGAGTTCCTCTAGCTTGCTTACTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| CDS-3UTR CCA 90 bp | TTACTTGAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTACACCACTGCTACAAATaGTTCTTGAAACTGCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LLELLFLPHTSFEKYLVVHHCYK*FLKLLV Trigger: AACCAGCAGTTTCAAGAACCATTTGTAGCAGTGGTG...TACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTCAAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027050.10 ENSMUST00000190155.7 |
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| CDS-3UTR TCA 90 bp | AGGCAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGTCATACGCAGCAGCTTaGGCATTTACTCGAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: RQDLNTIDLVSLFPPINKSYAAA*AFTRVS Trigger: AGAAACTCGAGTAAATGCTCAAGCTGCTGCGTATGA...CTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CCA 90 bp | AATAGACTGTCAAGAGAAGGCACAAGAAAAACTGACAAGTTTGTGACCATGGTGAGAGATTGTTCTGGTTaGATCAATCACCACTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: NRLSREGTRKTDKFVTMVRDCSG*INHHCY Trigger: GTAGCAGTGGTGATTGATCCAACCAGAACAATCTCT...CACCATGGTCACAAACTTGTCAGTTTTTCTTGTGCCTTCTCTTGACAGTCTATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CCA 90 bp | AGGACAATTTCACGTGATAGTTTTATTACAGTGCTAATACTCAGGACACCACACCATGGATGGCTTCTATaGTGGTTTTACAGCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: RTISRDSFITVLILRTPHHGWLL*WFYSCL Trigger: GAGACAGCTGTAAAACCACCATAGAAGCCATCCATG...GTGTGGTGTCCTGAGTATTAGCACTGTAATAAAACTATCACGTGAAATTGTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR GCA 90 bp | TTACTTGAGCTTCTTTTCCTTCCACACACCAGCTTTGAGAAGTACTTGGTGGTAAGGCATAATATTGTTTaGAGTGCACGCCAAAATCTT | + |
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Preference number: 4 (lower is better) Translates to: LLELLFLPHTSFEKYLVVRHNIV*SARQNL Trigger: AAGATTTTGGCGTGCACTGCAAACAATATTATGCCT...TACCACCAAGTACTTCTCAAAGCTGGTGTGTGGAAGGAAAAGAAGCTCAAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR GCA 90 bp | AGGCAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGGGCATTTTCTATGTATaGAGCCATATACTCATACGC | + |
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Preference number: 4 (lower is better) Translates to: RQDLNTIDLVSLFPPINKGIFYV*SHILIR Trigger: GCGTATGAGTATATGGCTGCATACATAGAAAATGCC...CTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR GCA 90 bp | ATTAGTAAGCAAGCTAGAGGAACTCAGGGTATTCACCCAGTATTTATTCCACAAGGCATTTTCTATGTATaGAGCCATATACTCATACGC | + |
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Preference number: 4 (lower is better) Translates to: ISKQARGTQGIHPVFIPQGIFYV*SHILIR Trigger: GCGTATGAGTATATGGCTGCATACATAGAAAATGCC...TTGTGGAATAAATACTGGGTGAATACCCTGAGTTCCTCTAGCTTGCTTACTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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| CDS-3UTR GCA 90 bp | AGGCAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGTGGATCAATCACCACTaGTACAAATGGTTCTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: RQDLNTIDLVSLFPPINKWINHH*YKWFLK Trigger: TTTCAAGAACCATTTGTAGCAGTGGTGATTGATCCA...CTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTGCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| 3UTR CAA 72 bp | ATGCTAAGATCCTTTGATTACTTTGATAGGCAGGATTaGAACACAATAGATCTAGTGAGTCTTTTTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: MLRSFDYFDRQD*NTIDLVSLFPP Trigger: GGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTGCCTATCAAAGTAATCAAAGGATCTTAGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CAA 90 bp | TTTACTCGAGTTTCTGTGCCCTCTACAGGCAAAGCGAAACTGTCCATGATGATCTGCGCTTCCTGCATGTaGTTGGCCAATTCCCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: FTRVSVPSTGKAKLSMMICASCM*LANSQV Trigger: AACCTGGGAATTGGCCAACAACATGCAGGAAGCGCA...GATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186528.7 |
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| CDS-3UTR CAA 90 bp | CAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGAGCTGCGCTTCCTGCATGTaGTTGGCCAATTCCCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: QDLNTIDLVSLFPPINKSCASCM*LANSQV Trigger: AACCTGGGAATTGGCCAACAACATGCAGGAAGCGCA...GCTCTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CAA 90 bp | CAGGATTTGAACACAATAGATCTAGTGAGTCTTTTTCCTCCCATAAACAAGAGCCAGAGATTGTTCTGGTaGGATCAATCACCACTGCTA | + |
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Preference number: 5 (lower is better) Translates to: QDLNTIDLVSLFPPINKSQRLFW*DQSPLL Trigger: TAGCAGTGGTGATTGATCCAACCAGAACAATCTCTG...GCTCTTGTTTATGGGAGGAAAAAGACTCACTAGATCTATTGTGTTCAAATCCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027050.10 |
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| CDS-3UTR CAA 90 bp | ATTAGTAAGCAAGCTAGAGGAACTCAGGGTATTCACCCAGTATTTATTCCACAACAGAGATTGTTCTGGTaGGATCAATCACCACTGCTA | + |
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Preference number: 5 (lower is better) Translates to: ISKQARGTQGIHPVFIPQQRLFW*DQSPLL Trigger: TAGCAGTGGTGATTGATCCAACCAGAACAATCTCTG...TTGTGGAATAAATACTGGGTGAATACCCTGAGTTCCTCTAGCTTGCTTACTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190155.7 |
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