Pregenerated sensors for COPS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019373Ensembl transcript IDs: ENSMUST00000019517.10, ENSMUST00000141415.2, ENSMUST00000156837.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTGTCCAGGAGGAACCGGCATGGAACCCGCATGGTACTTCCTGCTaGGCTCTTCACACTTGCCAGGCCAAGGTTCTGTTACCTCAAGAT | + |
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Preference number: 1 (lower is better) Translates to: TVQEEPAWNPHGTSC*ALHTCQAKVLLPQD Trigger: ATCTTGAGGTAACAGAACCTTGGCCTGGCAAGTGTGAAGAGCGCAGCAGGAAGTACCATGCGGGTTCCATGCCGGTTCCTCCTGGACAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| 3UTR-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCCGCATGGTACTTCCTaGTGCGCTCTTCACACTTGC | + |
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Preference number: 2 (lower is better) Translates to: LCREWFSESNRTADVKLNPHGTS*CALHTC Trigger: GCAAGTGTGAAGAGCGCAGCAGGAAGTACCATGCGG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| 3UTR-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCATGGTACTTCCTGCTaGGCTCTTCACACTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: LCREWFSESNRTADVKLNHGTSC*ALHTCQ Trigger: CTGGCAAGTGTGAAGAGCGCAGCAGGAAGTACCATG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGAGCCCATGCTCTTTTaGACAAACTGGGGGTTCACC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNEPMLF*TNWGFT Trigger: GGTGAACCCCCAGTTTGTTCAAAAGAGCATGGGCTC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCACAGTGTCCAGATaGGACAAGTTCTTCGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNSTVSR*DKFFAR Trigger: CCTTGCGAAGAACTTGTCCCATCTGGACACTGTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGATTCCAACATGATATaGCTGACGGCCATGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNDSNMI*LTAMAG Trigger: TCCTGCCATGGCCGTCAGCCATATCATGTTGGAATC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCCCAAAGAGTGTTCTTaGACATCTAAAGCCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNPKECS*TSKAPS Trigger: GCTTGGGGCTTTAGATGTTCAAGAACACTCTTTGGG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGTGCATTTGTTAGCTaGTGGCAAAGCCCAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNSAFVS*WQSPAN Trigger: GTTTGCTGGGCTTTGCCATCAGCTAACAAATGCACT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGGAACACTGGGCATTaGGAACTTCACAAACAGAAC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNRNTGH*ELHKQN Trigger: GTTCTGTTTGTGAAGTTCTCAATGCCCAGTGTTCCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGGTTATCATGGAAACTaGCCATTCCATCCTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNGYHGN*PFHPSG Trigger: ACCAGAAGGATGGAATGGTCAGTTTCCATGATAACC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCAAACGTATCTGTTaGATATCGAATGTGCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNSKRIC*ISNVLA Trigger: GGCGAGCACATTCGATATGCAACAGATACGTTTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCTTCTTGTGAGCCCATaGTCTTTTGAACAAACTGGG | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNLLVSP*SFEQTG Trigger: CCCAGTTTGTTCAAAAGAGCATGGGCTCACAAGAAG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCGAAGTCAGGAACACTaGGCATTGAGAACTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNRSQEH*ALRTSQ Trigger: TTGTGAAGTTCTCAATGCCCAGTGTTCCTGACTTCG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAATCTACCCACTATTTaGGAGGTGTATTTAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNNLPTI*EVYLGS Trigger: GCTGCCTAAATACACCTCTCAAATAGTGGGTAGATT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTCTTGGTCGATGTTATaGAGCATGGCTGGGTTATTA | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNSWSML*SMAGLL Trigger: TAATAACCCAGCCATGCTTCATAACATCGACCAAGA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTTGCATATCGAATGTaGTCGCCATTACATGTACTG | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNVAYRM*SPLHVL Trigger: CAGTACATGTAATGGCGAGCACATTCGATATGCAAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTGGTTGGTATTCATCTaGATCTTGTCTATGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNWLVFI*ILSMAC Trigger: GCAAGCCATAGACAAGATGCAGATGAATACCAACCA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCACAGAAAGTGTTTTaGATCATAGGCTCCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNAQKVF*IIGSIL Trigger: GAGAATGGAGCCTATGATGCAAAACACTTTCTGTGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCTCATCCAGCTCTATaGATTTTAGCATCTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNAHPAL*ILASLG Trigger: ACCAAGAGATGCTAAAATGCATAGAGCTGGATGAGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCTGAGGTCAGTTGGTTaGTATTCATCTGCATCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNLRSVG*YSSASC Trigger: ACAAGATGCAGATGAATACCAACCAACTGACCTCAG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTTCTCAGGGTTATCATaGAAACTGACCATTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNFSGLS*KLTIPS Trigger: GGATGGAATGGTCAGTTTCCATGATAACCCTGAGAA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATATCCACATCAAGATATaGAAGGGCAGGTTTAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNIHIKI*KGRFKA Trigger: TGCTTTAAACCTGCCCTTCCATATCTTGATGTGGAT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTTATGAAGCATGGCTaGGTTATTATACTTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNVMKHG*VIILLR Trigger: CCTGAGAAGTATAATAACCCAGCCATGCTTCATAAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCAGCTGTTGTACTTTaGCAAGTAATATCAAAGACA | + |
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Preference number: 4 (lower is better) Translates to: LCREWFSESNRTADVKLNAAVVL*QVISKT Trigger: TGTCTTTGATATTACTTGGCAAAGTACAACAGCTGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS GCA 90 bp | TGCTTCACCAGGCCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTaGTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTGGTTGAA | + |
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Preference number: 5 (lower is better) Translates to: CFTRPMLLSRVKVSL*LLTRFRSSDGLLVE Trigger: TTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCTGGTGAAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATACCAGGCCCATGTTGTaGTCTCGAGTGAAGGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNTRPML*SRVKVS Trigger: CGAGACCTTCACTCGAGACAACAACATGGGCCTGGT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTTCACCAGGCCCATGTaGTTGTCTCGAGTGAAGGTC | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNFTRPM*LSRVKV Trigger: GACCTTCACTCGAGACAACAACATGGGCCTGGTGAA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCAGCAAACGTATCTGTaGCATATCGAATGTGCTCGC | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNQQTYL*HIECAR Trigger: GCGAGCACATTCGATATGCAACAGATACGTTTGCTG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATACTGAGGTCAGTTGGTaGGTATTCATCTGCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNTEVSW*VFICIL Trigger: CAAGATGCAGATGAATACCAACCAACTGACCTCAGT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTATTCATCTGCATCTaGTCTATGGCTTGCTTAAGG | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNVFICI*SMACLR Trigger: CCTTAAGCAAGCCATAGACAAGATGCAGATGAATAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCACAGAAAGTGTTTaGCATCATAGGCTCCATTCT | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNSTESV*HHRLHS Trigger: AGAATGGAGCCTATGATGCAAAACACTTTCTGTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGGCAGCTGTTGTACTTaGCCAAGTAATATCAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNGSCCT*PSNIKD Trigger: GTCTTTGATATTACTTGGCAAAGTACAACAGCTGCC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCAGACGGGTTGTTGGTaGAATAAACTTGTGCTAACT | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNQTGCW*NKLVLT Trigger: AGTTAGCACAAGTTTATTCAACCAACAACCCGTCTG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAAATCTACCCACTATTaGAGAGGTGTATTTAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNKSTHY*RGVFRQ Trigger: CTGCCTAAATACACCTCTCAAATAGTGGGTAGATTT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATATAACTGTACACGGCTaGCCATATCTTGTAATGATA | + |
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Preference number: 5 (lower is better) Translates to: LCREWFSESNRTADVKLNITVHG*PYLVMI Trigger: TATCATTACAAGATATGGCAAGCCGTGTACAGTTAT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS GCA 72 bp | AGGCCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTaGTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: RPMLLSRVKVSL*LLTRFRSSDGL Trigger: CAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 72 bp | CCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTGCTaGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PMLLSRVKVSLC*LTRFRSSDGLL Trigger: CAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 72 bp | AGAGACGACAGGCACTGCTTCACCAGGCCCATGTTGTaGTCTCGAGTGAAGGTCTCGCTGTGCTTGCTCACC | + |
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Preference number: 6 (lower is better) Translates to: RDDRHCFTRPML*SRVKVSLCLLT Trigger: GGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCTGGTGAAGCAGTGCCTGTCGTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 90 bp | GAACACTGGGCATTGAGAACTTCACAAACGGCCAAGGGTGATGACTaGAGGTTGATCCCTGAAACCCACACGGTAGCAAGGAAACAATTC | + |
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Preference number: 6 (lower is better) Translates to: EHWALRTSQTAKGDD*RLIPETHTVARKQF Trigger: GAATTGTTTCCTTGCTACCGTGTGGGTTTCAGGGATCAACCTCAAGTCATCACCCTTGGCCGTTTGTGAAGTTCTCAATGCCCAGTGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141415.2 |
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| CDS CCA 72 bp | AGGGCAGGTTTAAAGCACTTCGCTAGTAAACAAAGCTaGCAGAGATCGGCATGTACTGAGGTCAGTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: RAGLKHFASKQS*QRSACTEVSWL Trigger: CAACCAACTGACCTCAGTACATGCCGATCTCTGCCAGCTTTGTTTACTAGCGAAGTGCTTTAAACCTGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS CCA 72 bp | GCTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTaGTTGAATAAACTTGTGCTAACTCATGGTAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: ACSPGSAAQTGC*LNKLVLTHGKH Trigger: ATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 72 bp | TGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTGGTaGAATAAACTTGTGCTAACTCATGGTAAGCATTGC | + |
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Preference number: 6 (lower is better) Translates to: CSPGSAAQTGCW*NKLVLTHGKHC Trigger: GCAATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS TCA 72 bp | CACGGTAGCAAGGAAACAATTCCCACAAGTTGTCTCTaGCCTAGAACAGCAAGGACACCCAAAGAGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: HGSKETIPTSCL*PRTARTPKECS Trigger: AGAACACTCTTTGGGTGTCCTTGCTGTTCTAGGTCAGAGACAACTTGTGGGAATTGTTTCCTTGCTACCGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141415.2 |
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| CDS CAA 72 bp | AGCTGGCAGAGATCGGCATGTACTGAGGTCAGTTGGTaGGTATTCATCTGCATCTTGTCTATGGCTTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: SWQRSACTEVSW*VFICILSMACL Trigger: TAAGCAAGCCATAGACAAGATGCAGATGAATACCAACCAACTGACCTCAGTACATGCCGATCTCTGCCAGCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019517.10 |
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| CDS TCA 72 bp | GCATTGCTGAGAGGCTTAATAAATCTACCCACTATTTaGGAGGTGTATTTAGGCAGCTGTTGTACTTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: ALLRGLINLPTI*EVYLGSCCTLP Trigger: TGGCAAAGTACAACAGCTGCCTAAATACACCTCTCAAATAGTGGGTAGATTTATTAAGCCTCTCAGCAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 72 bp | AGCATTGCTGAGAGGCTTAATAAATCTACCCACTATTaGAGAGGTGTATTTAGGCAGCTGTTGTACTTTGCC | + |
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Preference number: 6 (lower is better) Translates to: SIAERLNKSTHY*RGVFRQLLYFA Trigger: GGCAAAGTACAACAGCTGCCTAAATACACCTCTCAAATAGTGGGTAGATTTATTAAGCCTCTCAGCAATGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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| CDS CAA 72 bp | TCATTCCTCCATAATAGTAGTAGCACAGAAAGTGTTTaGCATCATAGGCTCCATTCTCTTTACAGATATCCA | + |
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Preference number: 6 (lower is better) Translates to: SFLHNSSSTESV*HHRLHSLYRYP Trigger: TGGATATCTGTAAAGAGAATGGAGCCTATGATGCAAAACACTTTCTGTGCTACTACTATTATGGAGGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019517.10 ENSMUST00000156837.2 |
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