RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COPS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019373

Ensembl transcript IDs: ENSMUST00000019517.10, ENSMUST00000141415.2, ENSMUST00000156837.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTGTCCAGGAGGAACCGGCATGGAACCCGCATGGTACTTCCTGCTaGGCTCTTCACACTTGCCAGGCCAAGGTTCTGTTACCTCAAGAT +
Preference number: 1 (lower is better)
Translates to: TVQEEPAWNPHGTSC*ALHTCQAKVLLPQD
Trigger: ATCTTGAGGTAACAGAACCTTGGCCTGGCAAGTGTGAAGAGCGCAGCAGGAAGTACCATGCGGGTTCCATGCCGGTTCCTCCTGGACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
3UTR-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCCGCATGGTACTTCCTaGTGCGCTCTTCACACTTGC +
Preference number: 2 (lower is better)
Translates to: LCREWFSESNRTADVKLNPHGTS*CALHTC
Trigger: GCAAGTGTGAAGAGCGCAGCAGGAAGTACCATGCGG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
3UTR-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCATGGTACTTCCTGCTaGGCTCTTCACACTTGCCAG +
Preference number: 2 (lower is better)
Translates to: LCREWFSESNRTADVKLNHGTSC*ALHTCQ
Trigger: CTGGCAAGTGTGAAGAGCGCAGCAGGAAGTACCATG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGAGCCCATGCTCTTTTaGACAAACTGGGGGTTCACC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNEPMLF*TNWGFT
Trigger: GGTGAACCCCCAGTTTGTTCAAAAGAGCATGGGCTC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCACAGTGTCCAGATaGGACAAGTTCTTCGCAAGG +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNSTVSR*DKFFAR
Trigger: CCTTGCGAAGAACTTGTCCCATCTGGACACTGTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGATTCCAACATGATATaGCTGACGGCCATGGCAGGA +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNDSNMI*LTAMAG
Trigger: TCCTGCCATGGCCGTCAGCCATATCATGTTGGAATC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCCCAAAGAGTGTTCTTaGACATCTAAAGCCCCAAGC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNPKECS*TSKAPS
Trigger: GCTTGGGGCTTTAGATGTTCAAGAACACTCTTTGGG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGTGCATTTGTTAGCTaGTGGCAAAGCCCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNSAFVS*WQSPAN
Trigger: GTTTGCTGGGCTTTGCCATCAGCTAACAAATGCACT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGGAACACTGGGCATTaGGAACTTCACAAACAGAAC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNRNTGH*ELHKQN
Trigger: GTTCTGTTTGTGAAGTTCTCAATGCCCAGTGTTCCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGGTTATCATGGAAACTaGCCATTCCATCCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNGYHGN*PFHPSG
Trigger: ACCAGAAGGATGGAATGGTCAGTTTCCATGATAACC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCAAACGTATCTGTTaGATATCGAATGTGCTCGCC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNSKRIC*ISNVLA
Trigger: GGCGAGCACATTCGATATGCAACAGATACGTTTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCTTCTTGTGAGCCCATaGTCTTTTGAACAAACTGGG +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNLLVSP*SFEQTG
Trigger: CCCAGTTTGTTCAAAAGAGCATGGGCTCACAAGAAG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCGAAGTCAGGAACACTaGGCATTGAGAACTTCACAA +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNRSQEH*ALRTSQ
Trigger: TTGTGAAGTTCTCAATGCCCAGTGTTCCTGACTTCG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAATCTACCCACTATTTaGGAGGTGTATTTAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNNLPTI*EVYLGS
Trigger: GCTGCCTAAATACACCTCTCAAATAGTGGGTAGATT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR TCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTCTTGGTCGATGTTATaGAGCATGGCTGGGTTATTA +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNSWSML*SMAGLL
Trigger: TAATAACCCAGCCATGCTTCATAACATCGACCAAGA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTTGCATATCGAATGTaGTCGCCATTACATGTACTG +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNVAYRM*SPLHVL
Trigger: CAGTACATGTAATGGCGAGCACATTCGATATGCAAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTGGTTGGTATTCATCTaGATCTTGTCTATGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNWLVFI*ILSMAC
Trigger: GCAAGCCATAGACAAGATGCAGATGAATACCAACCA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCACAGAAAGTGTTTTaGATCATAGGCTCCATTCTC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNAQKVF*IIGSIL
Trigger: GAGAATGGAGCCTATGATGCAAAACACTTTCTGTGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCTCATCCAGCTCTATaGATTTTAGCATCTCTTGGT +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNAHPAL*ILASLG
Trigger: ACCAAGAGATGCTAAAATGCATAGAGCTGGATGAGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCTGAGGTCAGTTGGTTaGTATTCATCTGCATCTTGT +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNLRSVG*YSSASC
Trigger: ACAAGATGCAGATGAATACCAACCAACTGACCTCAG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTTCTCAGGGTTATCATaGAAACTGACCATTCCATCC +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNFSGLS*KLTIPS
Trigger: GGATGGAATGGTCAGTTTCCATGATAACCCTGAGAA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATATCCACATCAAGATATaGAAGGGCAGGTTTAAAGCA +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNIHIKI*KGRFKA
Trigger: TGCTTTAAACCTGCCCTTCCATATCTTGATGTGGAT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTTATGAAGCATGGCTaGGTTATTATACTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNVMKHG*VIILLR
Trigger: CCTGAGAAGTATAATAACCCAGCCATGCTTCATAAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR GCA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGCAGCTGTTGTACTTTaGCAAGTAATATCAAAGACA +
Preference number: 4 (lower is better)
Translates to: LCREWFSESNRTADVKLNAAVVL*QVISKT
Trigger: TGTCTTTGATATTACTTGGCAAAGTACAACAGCTGC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS GCA 90 bp TGCTTCACCAGGCCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTaGTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTGGTTGAA +
Preference number: 5 (lower is better)
Translates to: CFTRPMLLSRVKVSL*LLTRFRSSDGLLVE
Trigger: TTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCTGGTGAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATACCAGGCCCATGTTGTaGTCTCGAGTGAAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNTRPML*SRVKVS
Trigger: CGAGACCTTCACTCGAGACAACAACATGGGCCTGGT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATTTCACCAGGCCCATGTaGTTGTCTCGAGTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNFTRPM*LSRVKV
Trigger: GACCTTCACTCGAGACAACAACATGGGCCTGGTGAA...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCAGCAAACGTATCTGTaGCATATCGAATGTGCTCGC +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNQQTYL*HIECAR
Trigger: GCGAGCACATTCGATATGCAACAGATACGTTTGCTG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATACTGAGGTCAGTTGGTaGGTATTCATCTGCATCTTG +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNTEVSW*VFICIL
Trigger: CAAGATGCAGATGAATACCAACCAACTGACCTCAGT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGTATTCATCTGCATCTaGTCTATGGCTTGCTTAAGG +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNVFICI*SMACLR
Trigger: CCTTAAGCAAGCCATAGACAAGATGCAGATGAATAC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAGCACAGAAAGTGTTTaGCATCATAGGCTCCATTCT +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNSTESV*HHRLHS
Trigger: AGAATGGAGCCTATGATGCAAAACACTTTCTGTGCT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATGGCAGCTGTTGTACTTaGCCAAGTAATATCAAAGAC +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNGSCCT*PSNIKD
Trigger: GTCTTTGATATTACTTGGCAAAGTACAACAGCTGCC...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATCAGACGGGTTGTTGGTaGAATAAACTTGTGCTAACT +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNQTGCW*NKLVLT
Trigger: AGTTAGCACAAGTTTATTCAACCAACAACCCGTCTG...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATAAATCTACCCACTATTaGAGAGGTGTATTTAGGCAG +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNKSTHY*RGVFRQ
Trigger: CTGCCTAAATACACCTCTCAAATAGTGGGTAGATTT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS-3UTR CAA 90 bp CTTTGCAGAGAATGGTTTTCTGAAAGCAATAGGACTGCAGATGTTAAACTGAATATAACTGTACACGGCTaGCCATATCTTGTAATGATA +
Preference number: 5 (lower is better)
Translates to: LCREWFSESNRTADVKLNITVHG*PYLVMI
Trigger: TATCATTACAAGATATGGCAAGCCGTGTACAGTTAT...ATTCAGTTTAACATCTGCAGTCCTATTGCTTTCAGAAAACCATTCTCTGCAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS GCA 72 bp AGGCCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTaGTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTG +
Preference number: 6 (lower is better)
Translates to: RPMLLSRVKVSL*LLTRFRSSDGL
Trigger: CAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 72 bp CCCATGTTGTTGTCTCGAGTGAAGGTCTCGCTGTGCTaGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTG +
Preference number: 6 (lower is better)
Translates to: PMLLSRVKVSLC*LTRFRSSDGLL
Trigger: CAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 72 bp AGAGACGACAGGCACTGCTTCACCAGGCCCATGTTGTaGTCTCGAGTGAAGGTCTCGCTGTGCTTGCTCACC +
Preference number: 6 (lower is better)
Translates to: RDDRHCFTRPML*SRVKVSLCLLT
Trigger: GGTGAGCAAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCTGGTGAAGCAGTGCCTGTCGTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 90 bp GAACACTGGGCATTGAGAACTTCACAAACGGCCAAGGGTGATGACTaGAGGTTGATCCCTGAAACCCACACGGTAGCAAGGAAACAATTC +
Preference number: 6 (lower is better)
Translates to: EHWALRTSQTAKGDD*RLIPETHTVARKQF
Trigger: GAATTGTTTCCTTGCTACCGTGTGGGTTTCAGGGATCAACCTCAAGTCATCACCCTTGGCCGTTTGTGAAGTTCTCAATGCCCAGTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141415.2
CDS CCA 72 bp AGGGCAGGTTTAAAGCACTTCGCTAGTAAACAAAGCTaGCAGAGATCGGCATGTACTGAGGTCAGTTGGTTG +
Preference number: 6 (lower is better)
Translates to: RAGLKHFASKQS*QRSACTEVSWL
Trigger: CAACCAACTGACCTCAGTACATGCCGATCTCTGCCAGCTTTGTTTACTAGCGAAGTGCTTTAAACCTGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS CCA 72 bp GCTTGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTaGTTGAATAAACTTGTGCTAACTCATGGTAAGCAT +
Preference number: 6 (lower is better)
Translates to: ACSPGSAAQTGC*LNKLVLTHGKH
Trigger: ATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 72 bp TGCTCACCAGGTTCCGCAGCTCAGACGGGTTGTTGGTaGAATAAACTTGTGCTAACTCATGGTAAGCATTGC +
Preference number: 6 (lower is better)
Translates to: CSPGSAAQTGCW*NKLVLTHGKHC
Trigger: GCAATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS TCA 72 bp CACGGTAGCAAGGAAACAATTCCCACAAGTTGTCTCTaGCCTAGAACAGCAAGGACACCCAAAGAGTGTTCT +
Preference number: 6 (lower is better)
Translates to: HGSKETIPTSCL*PRTARTPKECS
Trigger: AGAACACTCTTTGGGTGTCCTTGCTGTTCTAGGTCAGAGACAACTTGTGGGAATTGTTTCCTTGCTACCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141415.2
CDS CAA 72 bp AGCTGGCAGAGATCGGCATGTACTGAGGTCAGTTGGTaGGTATTCATCTGCATCTTGTCTATGGCTTGCTTA +
Preference number: 6 (lower is better)
Translates to: SWQRSACTEVSW*VFICILSMACL
Trigger: TAAGCAAGCCATAGACAAGATGCAGATGAATACCAACCAACTGACCTCAGTACATGCCGATCTCTGCCAGCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019517.10
CDS TCA 72 bp GCATTGCTGAGAGGCTTAATAAATCTACCCACTATTTaGGAGGTGTATTTAGGCAGCTGTTGTACTTTGCCA +
Preference number: 6 (lower is better)
Translates to: ALLRGLINLPTI*EVYLGSCCTLP
Trigger: TGGCAAAGTACAACAGCTGCCTAAATACACCTCTCAAATAGTGGGTAGATTTATTAAGCCTCTCAGCAATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 72 bp AGCATTGCTGAGAGGCTTAATAAATCTACCCACTATTaGAGAGGTGTATTTAGGCAGCTGTTGTACTTTGCC +
Preference number: 6 (lower is better)
Translates to: SIAERLNKSTHY*RGVFRQLLYFA
Trigger: GGCAAAGTACAACAGCTGCCTAAATACACCTCTCAAATAGTGGGTAGATTTATTAAGCCTCTCAGCAATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2
CDS CAA 72 bp TCATTCCTCCATAATAGTAGTAGCACAGAAAGTGTTTaGCATCATAGGCTCCATTCTCTTTACAGATATCCA +
Preference number: 6 (lower is better)
Translates to: SFLHNSSSTESV*HHRLHSLYRYP
Trigger: TGGATATCTGTAAAGAGAATGGAGCCTATGATGCAAAACACTTTCTGTGCTACTACTATTATGGAGGAATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019517.10
ENSMUST00000156837.2