Pregenerated sensors for COPRS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031458Ensembl transcript IDs: ENSMUST00000033839.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ATAGCCCACACTGAGGAGTCGCTGAGAACGGACAGAGTATCTCACTaGAAACACAGGAAACAACTTGTGATCTGGAGGACACAAAAACTC | + |
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Preference number: 2 (lower is better) Translates to: IAHTEESLRTDRVSH*KHRKQLVIWRTQKL Trigger: GAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGTGTTTCAAGTGAGATACTCTGTCCGTTCTCAGCGACTCCTCAGTGTGGGCTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| 3UTR-3UTR TCA 90 bp | TCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCAGTACAGGAAACAACTTGTaGTCTGGAGGACACAAAAAC | + |
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Preference number: 2 (lower is better) Translates to: SNTLQSPLTTTTTTTCPSTGNNL*SGGHKN Trigger: GTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGT...ACTGGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| 3UTR-3UTR CCA 90 bp | AAATTCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCAAACAACTTGTGATCTaGAGGACACAAAAACTCCCC | + |
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Preference number: 2 (lower is better) Translates to: KFQHTPESINNNHHNNMPKQLVI*RTQKLP Trigger: GGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTT...GGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| 3UTR CCA 72 bp | GTATCTCACTTGAAACACAGGAAACAACTTGTGATCTaGAGGACACAAAAACTCCCCCACTCCACTGTGGAA | + |
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Preference number: 3 (lower is better) Translates to: VSHLKHRKQLVI*RTQKLPHSTVE Trigger: TTCCACAGTGGAGTGGGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGTGTTTCAAGTGAGATAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| 3UTR-3UTR CAA 90 bp | GAGTCCATTAACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATGACAGAGTATCTCACTaGAAACACAGGAAACAACTT | + |
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Preference number: 3 (lower is better) Translates to: ESINNNHHNNMPQLMPVYDRVSH*KHRKQL Trigger: AAGTTGTTTCCTGTGTTTCAAGTGAGATACTCTGTC...ATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | GAGTCCATTAACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATAGCCAGCCTCCGCGCTaGGGGCCTCCTGCGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: ESINNNHHNNMPQLMPVYSQPPR*GPPANS Trigger: GGAGTTCGCAGGAGGCCCCCAGCGCGGAGGCTGGCT...ATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | TTCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCAGCTGCAGCCTGTTCCATaGGTGGGCAGGATGGACCCT | + |
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Preference number: 4 (lower is better) Translates to: FQHTPESINNNHHNNMPQLQPVP*VGRMDP Trigger: AGGGTCCATCCTGCCCACCCATGGAACAGGCTGCAG...CTGGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR TCA 90 bp | AATTCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCTCAGCAGGGATGCTCTaGGCTCCACTGGCTAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: NSNTLQSPLTTTTTTTCPSAGML*APLASR Trigger: TCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGA...GGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR TCA 90 bp | TCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCAGTTGGAGTAGTGTGGTATaGGTGGAGGTGGATGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: SNTLQSPLTTTTTTTCPSWSSVV*VEVDGA Trigger: GGCACCATCCACCTCCACTCATACCACACTACTCCA...ACTGGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR GCA 90 bp | AACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATAGCCCACACCATGTCTCCCTGTGGTaGACAGCACACCCAAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: NNNHHNNMPQLMPVYSPHHVSLW*TAHPRL Trigger: AAGCCTTGGGTGTGCTGTGCACCACAGGGAGACATG...GTGTGGGCTATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR GCA 90 bp | AACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATAGCCCACACGAATGTCAGCAGGGATaGTCTGAGCTCCACTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: NNNHHNNMPQLMPVYSPHECQQG*SELHWL Trigger: TAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTC...GTGTGGGCTATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | CACAGGAAACAACTTGTGATCTGGAGGACACAAAAACTCCCCCACTCCACTGTGCAAGGCTTGATCTCTTaGGAAATGCTCCCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: HRKQLVIWRTQKLPHSTVQGLIS*EMLPWM Trigger: CATCCAGGGGAGCATTTCCCAAGAGATCAAGCCTTG...CACAGTGGAGTGGGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR TCA 90 bp | AATTCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCAGCACACCCAAGGCTTaGTCTCTTGGGAAATGCTCC | + |
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Preference number: 4 (lower is better) Translates to: NSNTLQSPLTTTTTTTCPSTPKA*SLGKCS Trigger: GGAGCATTTCCCAAGAGATCAAGCCTTGGGTGTGCT...GGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR GCA 90 bp | AACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATAGCCCACACAGCTTCCTTCTCCACTaGAAAGCCTTCCTCCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: NNNHHNNMPQLMPVYSPHSFLLH*KAFLLR Trigger: TCTGAGGAGGAAGGCTTTGCAGTGGAGAAGGAAGCT...GTGTGGGCTATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | AATTCCAACACACTCCAGAGTCCATTAACAACAACCACCACAACAACATGCCCCATGAGTGGAGGTGGATaGTGCCAACTGGGGTCGTAT | + |
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Preference number: 4 (lower is better) Translates to: NSNTLQSPLTTTTTTTCPMSGGG*CQLGSY Trigger: ATACGACCCCAGTTGGCACCATCCACCTCCACTCAT...GGGGCATGTTGTTGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | ATTAACAACAACCACCACAACAACATGCCCCAGTTAATGCCTGTCTATAGCCCATGGTATGAGTGGAGGTaGATGGTGCCAACTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: INNNHHNNMPQLMPVYSPWYEWR*MVPTGV Trigger: GACCCCAGTTGGCACCATCCACCTCCACTCATACCA...TGGGCTATAGACAGGCATTAACTGGGGCATGTTGTTGTGGTGGTTGTTGTTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | ACACAGGAAACAACTTGTGATCTGGAGGACACAAAAACTCCCCCACTCCACTGTGTAGTGTGGTATGAGTaGAGGTGGATGGTGCCAACT | + |
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Preference number: 4 (lower is better) Translates to: TQETTCDLEDTKTPPLHCVVWYE*RWMVPT Trigger: AGTTGGCACCATCCACCTCCACTCATACCACACTAC...ACAGTGGAGTGGGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CCA 90 bp | ACACAGGAAACAACTTGTGATCTGGAGGACACAAAAACTCCCCCACTCCACTGTCATCTTGGAGTAGTGTaGTATGAGTGGAGGTGGATG | + |
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Preference number: 4 (lower is better) Translates to: TQETTCDLEDTKTPPLHCHLGVV*YEWRWM Trigger: CATCCACCTCCACTCATACCACACTACTCCAAGATG...ACAGTGGAGTGGGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTCCTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS TCA 90 bp | GAACTTGGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGATGCTCTaGGCTCCACTGGCTAGTCGATCCACGGCCAGCTCAGTCTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: ELGPSAWAGMSAGML*APLASRSTASSVSV Trigger: GACGGAGACTGAGCTGGCCGTGGATCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS GCA 90 bp | CCTCAGAACTTGGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGATaGTCTGAGCTCCACTGGCTAGTCGATCCACGGCCAGCTCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: PQNLGPRHGQECQQG*SELHWLVDPRPAQS Trigger: AGACTGAGCTGGCCGTGGATCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTCTGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS CCA 90 bp | CCCATCAGCTTCCTTCTCCACTGCAAAGCCTTCCTCCTCAGAACTTaGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGATGCTCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: PISFLLHCKAFLLRT*ALGMGRNVSRDALS Trigger: GCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTCTGAGGAGGAAGGCTTTGCAGTGGAGAAGGAAGCTGATGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CAA 90 bp | GAAACAACTTGTGATCTGGAGGACACAAAAACTCCCCCACTCCACTGTGGAAAGCAGCACACCCAAGGCTaGATCTCTTGGGAAATGCTC | + |
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Preference number: 5 (lower is better) Translates to: ETTCDLEDTKTPPLHCGKQHTQG*ISWEML Trigger: GAGCATTTCCCAAGAGATCAAGCCTTGGGTGTGCTG...CTTTCCACAGTGGAGTGGGGGAGTTTTTGTGTCCTCCAGATCACAAGTTGTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS-3UTR CAA 90 bp | AACACAGACAAAAATTCCAACACACTCCAGAGTCCATTAACAACAACCACCACACCAAGGCTTGATCTCTaGGGAAATGCTCCCCTGGAT | + |
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Preference number: 5 (lower is better) Translates to: NTDKNSNTLQSPLTTTTTPRLDL*GNAPLD Trigger: ATCCAGGGGAGCATTTCCCAAGAGATCAAGCCTTGG...TGTGGTGGTTGTTGTTAATGGACTCTGGAGTGTGTTGGAATTTTTGTCTGTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS GCA 72 bp | GCTGTGGCAAAGCCAGCCTCCGCGCTGGGGGCCTCCTaGGAACTCCGCTCGCCCGGGCCCCGACCGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: AVAKPASALGAS*ELRSPGPRPVA Trigger: AGCCACCGGTCGGGGCCCGGGCGAGCGGAGTTCGCAGGAGGCCCCCAGCGCGGAGGCTGGCTTTGCCACAGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS TCA 72 bp | CCCTCGGCATGGGCAGGAATGTCAGCAGGGATGCTCTaGGCTCCACTGGCTAGTCGATCCACGGCCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: PSAWAGMSAGML*APLASRSTASS Trigger: TGAGCTGGCCGTGGATCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS GCA 72 bp | TTGGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGATaGTCTGAGCTCCACTGGCTAGTCGATCCACGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LGPRHGQECQQG*SELHWLVDPRP Trigger: TGGCCGTGGATCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS CCA 72 bp | GGGCAGGAATGTCAGCAGGGATGCTCTGAGCTCCACTaGCTAGTCGATCCACGGCCAGCTCAGTCTCCGTCT | + |
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Preference number: 6 (lower is better) Translates to: GQECQQGCSELH*LVDPRPAQSPS Trigger: AGACGGAGACTGAGCTGGCCGTGGATCGACTAGCCAGTGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS CAA 90 bp | CCCCATCAGCTTCCTTCTCCACTGCAAAGCCTTCCTCCTCAGAACTaGGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGATGCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: PHQLPSPLQSLPPQN*GPRHGQECQQGCSE Trigger: CTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTCTGAGGAGGAAGGCTTTGCAGTGGAGAAGGAAGCTGATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS GCA 72 bp | CCAGGCATACAACTCCCCATCAGCTTCCTTCTCCACTaGAAAGCCTTCCTCCTCAGAACTTGGGCCCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: PGIQLPISFLLH*KAFLLRTWALG Trigger: GCCGAGGGCCCAAGTTCTGAGGAGGAAGGCTTTGCAGTGGAGAAGGAAGCTGATGGGGAGTTGTATGCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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| CDS CCA 72 bp | TTCCTTCTCCACTGCAAAGCCTTCCTCCTCAGAACTTaGGCCCTCGGCATGGGCAGGAATGTCAGCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: FLLHCKAFLLRT*ALGMGRNVSRD Trigger: ATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTCTGAGGAGGAAGGCTTTGCAGTGGAGAAGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033839.9 |
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