Pregenerated sensors for COPE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055681Ensembl transcript IDs: ENSMUST00000066469.14, ENSMUST00000128003.8, ENSMUST00000150968.8, ENSMUST00000167850.3, ENSMUST00000168018.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGCAGTGGCTAGCTGGGTAAGGGTGGCGTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTCCGGGCTAGGTCCAGCCTGTCCAGC | + |
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Preference number: 1 (lower is better) Translates to: QAVASWVRVASSSWS*IFFSSFRARSSLSS Trigger: GCTGGACAGGCTGGACCTAGCCCGGAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR GCA 90 bp | AATGAGATTGATGAGGGTCTCAGGGTGGCCGCTGTCCTTGTCCAGTaGCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGTGC | + |
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Preference number: 1 (lower is better) Translates to: NEIDEGLRVAAVLVQ*LLQHTLCSLPAALC Trigger: GCACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCCTCATCAATCTCATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR CCA 90 bp | AGCTTCTCACCACCCACAGCCAGGTTGACCCAGGCAGTGGCTAGCTaGGTAAGGGTGGCGTCCTCATCTTGGTCCTGCATCTTCTTCAGC | + |
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Preference number: 1 (lower is better) Translates to: SFSPPTARLTQAVAS*VRVASSSWSCIFFS Trigger: GCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTGGGTCAACCTGGCTGTGGGTGGTGAGAAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR CCA 90 bp | CCCAGGTGCTGTGACAGTACAATGAGATTGATGAGGGTCTCAGGGTaGCCGCTGTCCTTGTCCAGTGCCTCTTGCAGCACACCCTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: PRCCDSTMRLMRVSG*PLSLSSASCSTPSA Trigger: TGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCCTCATCAATCTCATTGTACTGTCACAGCACCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGAGGACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTCCCGCGGCACACAGTTaGGGTCACCAGGGCATCTCC | + |
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Preference number: 2 (lower is better) Translates to: REDSIPRHTVGVTRASPLPAAHS*GHQGIS Trigger: GGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGG...AAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGTCCTCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| 3UTR-3UTR CCA 90 bp | GGGTCTCAGGGTGGCCGCTGTCCTTGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGGCAGTGGCTAGCTaGGTAAGGGTGGCGTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GSQGGRCPCPVPLAAHPLQAVAS*VRVASS Trigger: TGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTG...CAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCTTGCCCAGGTGCTGTGACAGTACAATGAGATTGATGAGGGTCTCAGGGCGGCCCTGTGCTGAGTaGCAGGCTGCCTGGCCATTG | + |
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Preference number: 2 (lower is better) Translates to: GGLPRCCDSTMRLMRVSGRPCAE*QAAWPL Trigger: CAATGGCCAGGCAGCCTGCCACTCAGCACAGGGCCG...CCCTGAGACCCTCATCAATCTCATTGTACTGTCACAGCACCTGGGCAAGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGCAGCAGTGTGGGGGAGCACTTGTCGGCCAGCTCTTGGAATATGTAGTAGGCACCCACAGCCAGGTTaGCCCAGGCAGTGGCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: AAAVWGSTCRPALGICSRHPQPG*PRQWLA Trigger: AGCTAGCCACTGCCTGGGTCAACCTGGCTGTGGGTG...CCTACTACATATTCCAAGAGCTGGCCGACAAGTGCTCCCCCACACTGCTGCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGTGCTGAGTGTGGCGTCCTCATCTTaGTCCTGCATCTTCTTCAGC | + |
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Preference number: 2 (lower is better) Translates to: PVPLAAHPLQSPSGPVLSVASSS*SCIFFS Trigger: GCTGAAGAAGATGCAGGACCAAGATGAGGACGCCAC...ACTCAGCACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR CAA 90 bp | GTCACCTCAGGGGGCTTGCCCAGGTGCTGTGACAGTACAATGAGATaGATGAGGGTCTCAGGGTGGCCGCTGTCCTTGTCCAGTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: VTSGGLPRCCDSTMR*MRVSGWPLSLSSAS Trigger: AGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCCTCATCAATCTCATTGTACTGTCACAGCACCTGGGCAAGCCCCCTGAGGTGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR GCA 90 bp | TCCTTGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGTTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: SLSSASCSTPSAVSQRPCSSSWS*IFFSSF Trigger: GAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGA...ACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTTCAGCTGTGACAAGTATCGGTTTGTCACCTCAGGGGGCTTGCCCAGGTATGAGGGTCTCAGGGTaGCCGCTGTCCTTGTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: HPSAVTSIGLSPQGACPGMRVSG*PLSLSS Trigger: ACTGGACAAGGACAGCGGCCACCCTGAGACCCTCAT...ACCTGGGCAAGCCCCCTGAGGTGACAAACCGATACTTGTCACAGCTGAAGGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR GCA 72 bp | GATGAGGGTCTCAGGGTGGCCGCTGTCCTTGTCCAGTaGCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCG | + |
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Preference number: 3 (lower is better) Translates to: DEGLRVAAVLVQ*LLQHTLCSLPA Trigger: CGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCCTCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR CCA 72 bp | CCACCCACAGCCAGGTTGACCCAGGCAGTGGCTAGCTaGGTAAGGGTGGCGTCCTCATCTTGGTCCTGCATC | + |
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Preference number: 3 (lower is better) Translates to: PPTARLTQAVAS*VRVASSSWSCI Trigger: GATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTGGGTCAACCTGGCTGTGGGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR GCA 72 bp | GCTAGCTGGGTAAGGGTGGCGTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTCCGGGCTAGGTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: ASWVRVASSSWS*IFFSSFRARSS Trigger: GCTGGACCTAGCCCGGAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR TCA 72 bp | GATGAAGGGGTGGGCCCTGTGTGCATCCTTCAGCTGTaGCAAGTATCGGTTTGTCACCTCAGGGGGCTTGCC | + |
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Preference number: 3 (lower is better) Translates to: DEGVGPVCILQL*QVSVCHLRGLA Trigger: GGCAAGCCCCCTGAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGCCCACCCCTTCATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR TCA 72 bp | TCGGTTTGTCACCTCAGGGGGCTTGCCCAGGTGCTGTaGCAGTACAATGAGATTGATGAGGGTCTCAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: SVCHLRGLAQVL*QYNEIDEGLRV Trigger: CACCCTGAGACCCTCATCAATCTCATTGTACTGTCACAGCACCTGGGCAAGCCCCCTGAGGTGACAAACCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| 3UTR CCA 72 bp | CAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTaGGCGCATACTGCATTGCCAGGCGATCGAAATCGT | + |
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Preference number: 3 (lower is better) Translates to: QLGSPGHLHFKH*AHTALPGDRNR Trigger: ACGATTTCGATCGCCTGGCAATGCAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| 3UTR GCA 72 bp | AAGTATCGGTTTGTCACCTCAGGGGGCTTGCCCAGGTaGTGTGACAGTACAATGAGATTGATGAGGGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: KYRFVTSGGLPR*CDSTMRLMRVS Trigger: TGAGACCCTCATCAATCTCATTGTACTGTCACAGCACCTGGGCAAGCCCCCTGAGGTGACAAACCGATACTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR GCA 90 bp | AGGGAGGACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTCAGGGTTCGCAGGGCTaGATCCGGGTTCTGGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: REDSIPRHTVGVTRASPLQGSQG*IRVLVV Trigger: CACGACCAGAACCCGGATGCAGCCCTGCGAACCCTG...AAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGTCCTCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | CAGGGTGGCCGCTGTCCTTGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCAGGGTTCGCAGGGCTaGATCCGGGTTCTGGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: QGGRCPCPVPLAAHPLQSQGSQG*IRVLVV Trigger: CACGACCAGAACCCGGATGCAGCCCTGCGAACCCTG...AGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR CCA 90 bp | CCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGTGCTGAGTCTTCCCGCTCAGGACTaGAGAGCTTCACGCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PVPLAAHPLQSPSGPVLSLPAQD*RASRAE Trigger: CTCAGCGCGTGAAGCTCTCCAGTCCTGAGCGGGAAG...ACTCAGCACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR CCA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGGCCCTGTGCTGAGTaGCAGGCTGCCTGGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: HPAAHSWGHQGISTLSTGRPCAE*QAAWPL Trigger: CAATGGCCAGGCAGCCTGCCACTCAGCACAGGGCCG...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR TCA 90 bp | AGGACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGAGGCTGCCTGGCCATTaGGCAGCAGCAGTGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: RTASRGTQLGSPGHLHFKRLPGH*AAAVWG Trigger: CCCCCACACTGCTGCTGCTCAATGGCCAGGCAGCCT...CTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGTCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | AGGGAGGACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTCACCTCAGGGGGCTTaGCCAGGTGCTGTGACAGTA | + |
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Preference number: 4 (lower is better) Translates to: REDSIPRHTVGVTRASPLSPQGA*PGAVTV Trigger: TACTGTCACAGCACCTGGGCAAGCCCCCTGAGGTGA...AAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGTCCTCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CCA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGGAGTGGCAGGCTGCCTaGCCATTGAGCAGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: HPAAHSWGHQGISTLSTGEWQAA*PLSSSS Trigger: ACTGCTGCTGCTCAATGGCCAGGCAGCCTGCCACTC...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR TCA 90 bp | TGGGTAAGGGTGGCGTCCTCATCTTGGTCCTGCATCTTCTTCAGCTCCTTCCGGCGCGCTGAGCCTCGTTaGTGCACTGCTGGTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: WVRVASSSWSCIFFSSFRRAEPR*CTAGSC Trigger: GCAGCTACCAGCAGTGCATCAACGAGGCTCAGCGCG...CCGGAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR CCA 90 bp | CAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTCAGGCAGTGGCTAGCTaGGTAAGGGTGGCGTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: QHPAAHSWGHQGISTLSTQAVAS*VRVASS Trigger: TGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTG...AGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CCA 90 bp | AGGGAGGACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTCTGCTCACCTTGGCCTaGTACTCCTTGATGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: REDSIPRHTVGVTRASPLLLTLA*YSLMKG Trigger: CCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAG...AAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGTCCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR TCA 90 bp | AGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGCATTGCCACCCACAGCCAGGTTaGCCCAGGCAGTGGCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SWGHQGISTLSTGRILHCHPQPG*PRQWLA Trigger: AGCTAGCCACTGCCTGGGTCAACCTGGCTGTGGGTG...GCAATGCAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | CCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGTGCTGAGTTGCACTGCTGGTAGCTaGCGATGTAGAAAGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVPLAAHPLQSPSGPVLSCTAGS*RCRKRS Trigger: AGAACGCTTTCTACATCGGCAGCTACCAGCAGTGCA...ACTCAGCACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR CCA 90 bp | TCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGGTGGCGTCCTCATCTTaGTCCTGCATCTTCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SRGTQLGSPGHLHFKHWAVASSS*SCIFFS Trigger: GCTGAAGAAGATGCAGGACCAAGATGAGGACGCCAC...CGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CCA 90 bp | CAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTATGAGGGTCTCAGGGTaGCCGCTGTCCTTGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: QHPAAHSWGHQGISTLSTMRVSG*PLSLSS Trigger: ACTGGACAAGGACAGCGGCCACCCTGAGACCCTCAT...AGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CCA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGTCCTTGATGAAGGGGTaGGCCCTGTGTGCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: HPAAHSWGHQGISTLSTGSLMKG*ALCASF Trigger: GAAGGATGCACACAGGGCCCACCCCTTCATCAAGGA...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | ACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTTGTCCAGTGCCTCTTaGAGCACACCCTCTGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TASRGTQLGSPGHLHFKHLSSAS*STPSAV Trigger: GACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAA...GTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | GCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGATCCATAGGAACAACTaGCCTGCTCACCTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: ASRGTQLGSPGHLHFKHWIHRNN*PAHLGL Trigger: CAGGCCAAGGTGAGCAGGGCAGTTGTTCCTATGGAT...CCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CCA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGACGATGCTGTCCCTCTaGTTCTCACTGGCAAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HPAAHSWGHQGISTLSTGTMLSL*FSLARY Trigger: GTACCTTGCCAGTGAGAACCAGAGGGACAGCATCGT...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| 3UTR CAA 72 bp | ATGAGATTGATGAGGGTCTCAGGGTGGCCGCTGTCCTaGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: MRLMRVSGWPLS*SSASCSTPSAV Trigger: GACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCCTGAGACCCTCATCAATCTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168018.2 |
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| CDS-3UTR GCA 90 bp | GCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGGGGGGCTTGCCCAGGTaGTGTGACAGTACAATGAGA | + |
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Preference number: 4 (lower is better) Translates to: AHSWGHQGISTLSTGRILGGLPR*CDSTMR Trigger: TCTCATTGTACTGTCACAGCACCTGGGCAAGCCCCC...CAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR TCA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCTTGCCCAGGTGCTGTaGCAGTACAATGAGATTGAT | + |
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Preference number: 4 (lower is better) Translates to: HPAAHSWGHQGISTLSTGLAQVL*QYNEID Trigger: ATCAATCTCATTGTACTGTCACAGCACCTGGGCAAG...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR TCA 90 bp | ACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGCATCCTTCAGCTGTaGCAAGTATCGGTTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: TASRGTQLGSPGHLHFKHCILQL*QVSVCH Trigger: GTGACAAACCGATACTTGTCACAGCTGAAGGATGCA...GTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR GCA 90 bp | ACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TASRGTQLGSPGHLHFKHSSSWS*IFFSSF Trigger: GAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGA...GTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS GCA 90 bp | GGCCATGCACTCAAGGCCGTCGCCCTGGTGCAGGGTTCGCAGGGCTaGATCCGGGTTCTGGTCGTGGAAGTAGATGGAGGCAGCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: GHALKAVALVQGSQG*IRVLVVEVDGGSHE Trigger: CTCATGGCTGCCTCCATCTACTTCCACGACCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAGTGCATGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 |
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| CDS GCA 90 bp | CTCCTTCCACTCAAGGCCGTCGCCCTGGTGCAGGGTTCGCAGGGCTaGATCCGGGTTCTGGTCGTGGAAGTAGATGGAGGCAGCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: LLPLKAVALVQGSQG*IRVLVVEVDGGSHE Trigger: CTCATGGCTGCCTCCATCTACTTCCACGACCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAGTGGAAGGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150968.8 |
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| CDS-3UTR CAA 90 bp | ACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACCCACCCACAGCCAGGTaGACCCAGGCAGTGGCTAGC | + |
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Preference number: 5 (lower is better) Translates to: TASRGTQLGSPGHLHFKHPPTAR*TQAVAS Trigger: GCTAGCCACTGCCTGGGTCAACCTGGCTGTGGGTGG...GTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CAA 90 bp | CATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGGTCACCTCAGGGGGCTaGCCCAGGTGCTGTGACAGT | + |
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Preference number: 5 (lower is better) Translates to: HPAAHSWGHQGISTLSTGVTSGG*PRCCDS Trigger: ACTGTCACAGCACCTGGGCAAGCCCCCTGAGGTGAC...CCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS GCA 90 bp | CAGGCAGTGGCTAGCTGGGTAAGGGTGGCGTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTCCACTCAAGGCCGTCGCCCTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: QAVASWVRVASSSWS*IFFSSFHSRPSPWC Trigger: GCACCAGGGCGACGGCCTTGAGTGGAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGCCACTGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150968.8 |
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| CDS-3UTR CAA 90 bp | GCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGGGGTGGCCGCTGTCCTaGTCCAGTGCCTCTTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AHSWGHQGISTLSTGRILGWPLS*SSASCS Trigger: GCTGCAAGAGGCACTGGACAAGGACAGCGGCCACCC...CAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS CCA 90 bp | TCCTCCCTCCCATCCATAGGAACAACTGCCCTGCTCACCTTGGCCTaGTACTCCTTGATGAAGGGGTGGGCCCTGTGTGCATCCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SSLPSIGTTALLTLA*YSLMKGWALCASFS Trigger: GCTGAAGGATGCACACAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGTTGTTCCTATGGATGGGAGGGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS CCA 90 bp | CTCTGGTTCTCACTGGCAAGGTACTCAGCAAACATGCGCACAGCCTaGAGTTCTGGGGCCGAGGAGGGTTTGATCTCATCCAGGACCACG | + |
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Preference number: 5 (lower is better) Translates to: LWFSLARYSANMRTA*SSGAEEGLISSRTT Trigger: CGTGGTCCTGGATGAGATCAAACCCTCCTCGGCCCCAGAACTCCAGGCTGTGCGCATGTTTGCTGAGTACCTTGCCAGTGAGAACCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 |
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| CDS-3UTR CAA 90 bp | GCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGAGTGTGGGGGAGCACTaGTCGGCCAGCTCTTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: AHSWGHQGISTLSTGRILSVGEH*SASSWN Trigger: ATTCCAAGAGCTGGCCGACAAGTGCTCCCCCACACT...CAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS TCA 90 bp | CTACTTCCCGCTCAGGACTGGAGAGCTTCACGCGCTGAGCCTCGTTaGTGCACTGCTGGTAGCTGCCGATGTAGAAAGCGTTCTTCACGT | + |
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Preference number: 5 (lower is better) Translates to: LLPAQDWRASRAEPR*CTAGSCRCRKRSSR Trigger: ACGTGAAGAACGCTTTCTACATCGGCAGCTACCAGCAGTGCATCAACGAGGCTCAGCGCGTGAAGCTCTCCAGTCCTGAGCGGGAAGTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 ENSMUST00000168018.2 |
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| CDS CCA 90 bp | CTCACTGGCAAGGTACTCAGCAAACATGCGCACAGCCTGGAGTTCTaGGGCCGAGGAGGGTTTGATCTCATCCAGGACCACGCCATACTT | + |
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Preference number: 5 (lower is better) Translates to: LTGKVLSKHAHSLEF*GRGGFDLIQDHAIL Trigger: AAGTATGGCGTGGTCCTGGATGAGATCAAACCCTCCTCGGCCCCAGAACTCCAGGCTGTGCGCATGTTTGCTGAGTACCTTGCCAGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 |
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| CDS-3UTR CAA 90 bp | GCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGCTTGTCGGCCAGCTCTaGGAATATGTAGTAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: ASRGTQLGSPGHLHFKHWLVGQL*EYVVGF Trigger: GAAGCCTACTACATATTCCAAGAGCTGGCCGACAAG...CCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CAA 90 bp | AGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGCATTGCCTTGTCCAGTGCCTCTaGCAGCACACCCTCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: SWGHQGISTLSTGRILHCLVQCL*QHTLCS Trigger: ACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAG...GCAATGCAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CAA 90 bp | AGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACTGGGCGCATACTGCATTGCACTGCCCTGCTCACCTaGGCCTGGTACTCCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: SWGHQGISTLSTGRILHCTALLT*AWYSLM Trigger: CATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGT...GCAATGCAGTATGCGCCCAGTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS TCA 90 bp | GGGCTGCATCCGGGTTCTGGTCGTGGAAGTAGATGGAGGCAGCCATaGGCAGGAAAGTGGTATTGGTCACATCCACACTCCTGCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: GLHPGSGRGSRWRQP*AGKWYWSHPHSCSS Trigger: AGATGAGCAGGAGTGTGGATGTGACCAATACCACTTTCCTGCTCATGGCTGCCTCCATCTACTTCCACGACCAGAACCCGGATGCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 ENSMUST00000150968.8 ENSMUST00000168018.2 |
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| CDS CCA 90 bp | ACAACTGCCCTGCTCACCTTGGCCTGGTACTCCTTGATGAAGGGGTaGGCCCTGTGTGCATCCTTCAGCTGTGACAAGTATCGGTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: TTALLTLAWYSLMKG*ALCASFSCDKYRFV Trigger: GACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS-3UTR CAA 90 bp | ACAGCATCCCGCGGCACACAGTTGGGGTCACCAGGGCATCTCCACTTTAAGCACGACAGTACAATGAGATaGATGAGGGTCTCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: TASRGTQLGSPGHLHFKHDSTMR*MRVSGW Trigger: CCACCCTGAGACCCTCATCAATCTCATTGTACTGTC...GTGCTTAAAGTGGAGATGCCCTGGTGACCCCAACTGTGTGCCGCGGGATGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS TCA 90 bp | GTACTCCTTGATGAAGGGGTGGGCCCTGTGTGCATCCTTCAGCTGTaGCAAGTATCGGTTTGTCACCTTGTCCAGTGCCTCTTGCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: VLLDEGVGPVCILQL*QVSVCHLVQCLLQH Trigger: GTGCTGCAAGAGGCACTGGACAAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGCCCACCCCTTCATCAAGGAGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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| CDS GCA 72 bp | CTCAAGGCCGTCGCCCTGGTGCAGGGTTCGCAGGGCTaGATCCGGGTTCTGGTCGTGGAAGTAGATGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LKAVALVQGSQG*IRVLVVEVDGG Trigger: GCCTCCATCTACTTCCACGACCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 ENSMUST00000150968.8 |
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| CDS GCA 72 bp | ATCGTCATGGCCATGCACTCAAGGCCGTCGCCCTGGTaGAGGGTTCGCAGGGCTGCATCCGGGTTCTGGTCG | + |
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Preference number: 6 (lower is better) Translates to: IVMAMHSRPSPW*RVRRAASGFWS Trigger: CGACCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAGTGCATGGCCATGACGAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 |
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| CDS GCA 72 bp | TTCTTCAGCTCCTTCCACTCAAGGCCGTCGCCCTGGTaGAGGGTTCGCAGGGCTGCATCCGGGTTCTGGTCG | + |
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Preference number: 6 (lower is better) Translates to: FFSSFHSRPSPW*RVRRAASGFWS Trigger: CGACCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAGTGGAAGGAGCTGAAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150968.8 |
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| CDS TCA 72 bp | CGGGCTAGGTCCAGCCTGTCCAGCTTGAGGAGGATCTaGATCGTCATGGCCATGCACTCAAGGCCGTCGCCC | + |
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Preference number: 6 (lower is better) Translates to: RARSSLSSLRRI*IVMAMHSRPSP Trigger: GGGCGACGGCCTTGAGTGCATGGCCATGACGATTCAGATCCTCCTCAAGCTGGACAGGCTGGACCTAGCCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 |
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| CDS CCA 72 bp | ATCTTCTTCAGCTCCTTCCACTCAAGGCCGTCGCCCTaGTGCAGGGTTCGCAGGGCTGCATCCGGGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: IFFSSFHSRPSP*CRVRRAASGFW Trigger: CCAGAACCCGGATGCAGCCCTGCGAACCCTGCACCAGGGCGACGGCCTTGAGTGGAAGGAGCTGAAGAAGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150968.8 |
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| CDS CAA 90 bp | ACCGCTTCCTCCCTCCCATCCATAGGAACAACTGCCCTGCTCACCTaGGCCTGGTACTCCTTGATGAAGGGGTGGGCCCTGTGTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: TASSLPSIGTTALLT*AWYSLMKGWALCAS Trigger: GGATGCACACAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGTTGTTCCTATGGATGGGAGGGAGGAAGCGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS CAA 72 bp | TCCCTCCCATCCATAGGAACAACTGCCCTGCTCACCTaGGCCTGGTACTCCTTGATGAAGGGGTGGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SLPSIGTTALLT*AWYSLMKGWAL Trigger: CAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGTTGTTCCTATGGATGGGAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS CAA 90 bp | GCACTGGGCGCATACTGCATTGCCAGGCGATCGAAATCGTTCTCCTaGGCCTGGTACTCCTTGATGAAGGGGTGGGCCCTGTGTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: ALGAYCIARRSKSFS*AWYSLMKGWALCAS Trigger: GGATGCACACAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGAGAACGATTTCGATCGCCTGGCAATGCAGTATGCGCCCAGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000167850.3 |
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| CDS CAA 90 bp | GCCCTGTGTGCATCCTTCAGCTGTGACAAGTATCGGTTTGTCACCTaGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGTCTCCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: ALCASFSCDKYRFVT*SSASCSTPSAVSQR Trigger: CCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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| CDS TCA 72 bp | GCTCAGGACTGGAGAGCTTCACGCGCTGAGCCTCGTTaGTGCACTGCTGGTAGCTGCCGATGTAGAAAGCGT | + |
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Preference number: 6 (lower is better) Translates to: AQDWRASRAEPR*CTAGSCRCRKR Trigger: ACGCTTTCTACATCGGCAGCTACCAGCAGTGCATCAACGAGGCTCAGCGCGTGAAGCTCTCCAGTCCTGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 ENSMUST00000168018.2 |
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| CDS GCA 72 bp | GCTAGCTGGGTAAGGGTGGCGTCCTCATCTTGGTCCTaGATCTTCTTCAGCTCCTTCCACTCAAGGCCGTCG | + |
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Preference number: 6 (lower is better) Translates to: ASWVRVASSSWS*IFFSSFHSRPS Trigger: CGACGGCCTTGAGTGGAAGGAGCTGAAGAAGATGCAGGACCAAGATGAGGACGCCACCCTTACCCAGCTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150968.8 |
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| CDS GCA 72 bp | GACAAGTATCGGTTTGTCACCTTGTCCAGTGCCTCTTaGAGCACACCCTCTGCAGTCTCCCAGCGGCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: DKYRFVTLSSAS*STPSAVSQRPC Trigger: ACAGGGCCGCTGGGAGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGTGACAAACCGATACTTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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| CDS CCA 72 bp | CCAGCTCCAGCACGATGCTGTCCCTCTGGTTCTCACTaGCAAGGTACTCAGCAAACATGCGCACAGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PAPARCCPSGSH*QGTQQTCAQPG Trigger: TCCAGGCTGTGCGCATGTTTGCTGAGTACCTTGCCAGTGAGAACCAGAGGGACAGCATCGTGCTGGAGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 |
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| CDS CCA 72 bp | CCATCCATAGGAACAACTGCCCTGCTCACCTTGGCCTaGTACTCCTTGATGAAGGGGTGGGCCCTGTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: PSIGTTALLTLA*YSLMKGWALCA Trigger: TGCACACAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGTGAGCAGGGCAGTTGTTCCTATGGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128003.8 |
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| CDS CAA 90 bp | TCAGCAAACATGCGCACAGCCTGGAGTTCTGGGGCCGAGGAGGGTTaGATCTCATCCAGGACCACGCCATACTTCCTCTGTGCGAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SANMRTAWSSGAEEG*ISSRTTPYFLCARY Trigger: ATACCTCGCACAGAGGAAGTATGGCGTGGTCCTGGATGAGATCAAACCCTCCTCGGCCCCAGAACTCCAGGCTGTGCGCATGTTTGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 |
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| CDS CAA 90 bp | AGGGGTGGGCCCTGTGTGCATCCTTCAGCTGTGACAAGTATCGGTTaGTCACCTTGTCCAGTGCCTCTTGCAGCACACCCTCTGCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RGGPCVHPSAVTSIG*SPCPVPLAAHPLQS Trigger: AGACTGCAGAGGGTGTGCTGCAAGAGGCACTGGACAAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGCCCACCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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| CDS TCA 72 bp | TCAGCTCCTTCCGGGCTAGGTCCAGCCTGTCCAGCTTaGGGAGGATCTGAATCGTCATGGCCATGCACTCAA | + |
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Preference number: 6 (lower is better) Translates to: SAPSGLGPACPA*GGSESSWPCTQ Trigger: TTGAGTGCATGGCCATGACGATTCAGATCCTCCTCAAGCTGGACAGGCTGGACCTAGCCCGGAAGGAGCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000128003.8 |
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| CDS CCA 72 bp | AAGGTACTCAGCAAACATGCGCACAGCCTGGAGTTCTaGGGCCGAGGAGGGTTTGATCTCATCCAGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: KVLSKHAHSLEF*GRGGFDLIQDH Trigger: GTGGTCCTGGATGAGATCAAACCCTCCTCGGCCCCAGAACTCCAGGCTGTGCGCATGTTTGCTGAGTACCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000150968.8 |
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| CDS CAA 72 bp | GCATACTGCATTGCCAGGCGATCGAAATCGTTCTCCTaGGCCTGGTACTCCTTGATGAAGGGGTGGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: AYCIARRSKSFS*AWYSLMKGWAL Trigger: CAGGGCCCACCCCTTCATCAAGGAGTACCAGGCCAAGGAGAACGATTTCGATCGCCTGGCAATGCAGTATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066469.14 ENSMUST00000167850.3 |
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| CDS TCA 72 bp | GATGAAGGGGTGGGCCCTGTGTGCATCCTTCAGCTGTaGCAAGTATCGGTTTGTCACCTTGTCCAGTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: DEGVGPVCILQL*QVSVCHLVQCL Trigger: GAGGCACTGGACAAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGGCCCACCCCTTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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| CDS CAA 72 bp | CCCTGTGTGCATCCTTCAGCTGTGACAAGTATCGGTTaGTCACCTTGTCCAGTGCCTCTTGCAGCACACCCT | + |
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Preference number: 6 (lower is better) Translates to: PCVHPSAVTSIG*SPCPVPLAAHP Trigger: AGGGTGTGCTGCAAGAGGCACTGGACAAGGTGACAAACCGATACTTGTCACAGCTGAAGGATGCACACAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167850.3 |
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