Pregenerated sensors for COMMD9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027163Ensembl transcript IDs: ENSMUST00000028584.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCCCAGCAGGGCTGCAAGCTCAGAGAAGGGTCTGAGGGGACCGTaGTGCTATCTGTCTGCTGGCTTCTCTCTGCCGGGGAGCAGGCAC | + |
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Preference number: 1 (lower is better) Translates to: WPSRAASSEKGLRGP*CYLSAGFSLPGSRH Trigger: GTGCCTGCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 90 bp | GTGAGCTCACCCGAGCTAATGCTGGAGGTAACCTCACTAGGTGAGTaGCACGGTGCCGGCCTGAGCTCTCCACAGCAGCACGCACAGGCG | + |
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Preference number: 1 (lower is better) Translates to: VSSPELMLEVTSLGE*HGAGLSSPQQHAQA Trigger: CGCCTGTGCGTGCTGCTGTGGAGAGCTCAGGCCGGCACCGTGGCACTCACCTAGTGAGGTTACCTCCAGCATTAGCTCGGGTGAGCTCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR TCA 90 bp | AACTGGAGCTGTGGCCCAGCAGGGCTGCAAGCTCAGAGAAGGGTCTaGGGGGACCGTGCTGCTATCTGTCTGCTGGCTTCTCTCTGCCGG | + |
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Preference number: 1 (lower is better) Translates to: NWSCGPAGLQAQRRV*GDRAAICLLASLCR Trigger: CCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 90 bp | TGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTaGAAGCTCAGAGAAGGGTCTGAGGGGACCGTGCTGCTATCTGTC | + |
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Preference number: 1 (lower is better) Translates to: WCVPVFRTGAVAQQG*KLREGSEGTVLLSV Trigger: GACAGATAGCAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR CCA 90 bp | GGAATAGTGGCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTaGCCCAGCAGGGCTGCAAGCTCAGAGAAGGGTCTGAGGGGACCG | + |
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Preference number: 1 (lower is better) Translates to: GIVANGVFQFSELEL*PSRAASSEKGLRGP Trigger: CGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGCCACTATTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR-3UTR GCA 90 bp | AGGGGACCGTGCTGCTATCTGTCTGCTGGCTTCTCTCTGCCGGGGAGCAGGCACCACCGTCAGCCTCTGTaGGGACAACCACACCTTCGC | + |
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Preference number: 2 (lower is better) Translates to: RGPCCYLSAGFSLPGSRHHRQPL*GQPHLR Trigger: GCGAAGGTGTGGTTGTCCGCACAGAGGCTGACGGTG...GTGCCTGCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTGCTGAGGGGACCGTGCTaGTATCTGTCTGCTGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: WQMVCSSFPNWSCGPAGLLRGPC*YLSAGF Trigger: GAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAG...CAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR-3UTR CCA 90 bp | GCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTGCAGGGCCTTCTCAGAGATaGAGGCTTCTTCTCATCTTC | + |
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Preference number: 2 (lower is better) Translates to: ANGVFQFSELELWPSRAAGPSQR*RLLLIF Trigger: GAAGATGAGAAGAAGCCTCCATCTCTGAGAAGGCCC...TGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR CCA 72 bp | GAAGGGTCTGAGGGGACCGTGCTGCTATCTGTCTGCTaGCTTCTCTCTGCCGGGGAGCAGGCACTGCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: EGSEGTVLLSVC*LLSAGEQALLA Trigger: GGCCAGCAGTGCCTGCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAGACCCTTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 72 bp | GCTGCAAGCTCAGAGAAGGGTCTGAGGGGACCGTGCTaGTATCTGTCTGCTGGCTTCTCTCTGCCGGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: AASSEKGLRGPC*YLSAGFSLPGS Trigger: GCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 72 bp | AGGGCTGCAAGCTCAGAGAAGGGTCTGAGGGGACCGTaGTGCTATCTGTCTGCTGGCTTCTCTCTGCCGGGG | + |
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Preference number: 3 (lower is better) Translates to: RAASSEKGLRGP*CYLSAGFSLPG Trigger: CCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 72 bp | CCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTaGAAGCTCAGAGAAGGGTCTGAGGGGACCGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: PVFRTGAVAQQG*KLREGSEGTVL Trigger: CAGCACGGTCCCCTCAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR GCA 72 bp | CCCTCCATCACACTGTCTGCCCACCGTCAGCCTCTGTaGGGACAACCACACCTTCGCAGGCCAATAGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: PSITLSAHRQPL*GQPHLRRPIAG Trigger: ACCAGCTATTGGCCTGCGAAGGTGTGGTTGTCCGCACAGAGGCTGACGGTGGGCAGACAGTGTGATGGAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| 3UTR CCA 72 bp | GCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTaGCCCAGCAGGGCTGCAAGCTCAGAGAAGGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: ANGVFQFSELEL*PSRAASSEKGL Trigger: CAGACCCTTCTCTGAGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR GCA 90 bp | GAGCTAATGCTGGAGGTAACCTCACTAGGTGAGTGCCACGGTGCCGGCCTGAGCCTGCAGCAGTTGCGCTaGCTCCCCCTGGGGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: ELMLEVTSLGECHGAGLSLQQLR*LPLGHR Trigger: TCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAG...GCTCAGGCCGGCACCGTGGCACTCACCTAGTGAGGTTACCTCCAGCATTAGCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR GCA 90 bp | TGCCACGGTGCCGGCCTGAGCTCTCCACAGCAGCACGCACAGGCGGCTGATAAAAAGTGGTGCAGAGCCTaGAGCAGTTGCGCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: CHGAGLSSPQQHAQAADKKWCRA*SSCAAS Trigger: GGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTT...TTTATCAGCCGCCTGTGCGTGCTGCTGTGGAGAGCTCAGGCCGGCACCGTGGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR GCA 90 bp | TGCTGCTATCTGTCTGCTGGCTTCTCTCTGCCGGGGAGCAGGCACTGCTGGCCTAGCCTGGTGAAGTGGTaGAGAGCCTGCAGCAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: CCYLSAGFSLPGSRHCWPSLVKW*RACSSC Trigger: GCAACTGCTGCAGGCTCTGCACCACTTCACCAGGCT...AGGCCAGCAGTGCCTGCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | TCCCCTCCATGTATTCCAGGGCTGGAAGTGAGCTCACCCGAGCTAATGCTGGAGTGCGCTGCCTCCCCCTaGGGCACAGACAAGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SPPCIPGLEVSSPELMLECAASP*GTDKLE Trigger: CTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCA...CTCCAGCATTAGCTCGGGTGAGCTCACTTCCAGCCCTGGAATACATGGAGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCAGCAGCCCCTCCATCACACTGTCTGCCCACCGTCAGCCTCTGTGCGGACTTTGCTCAGCTCCATaGTCACAGCCGAGATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SSSSPSITLSAHRQPLCGLCSAP*SQPRWR Trigger: CCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAG...TCCGCACAGAGGCTGACGGTGGGCAGACAGTGTGATGGAGGGGCTGCTGCTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | AGGGGACCGTGCTGCTATCTGTCTGCTGGCTTCTCTCTGCCGGGGAGCAGGCACCCAGCCCATCTAACATaGTGTCCAGCGTCTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: RGPCCYLSAGFSLPGSRHPAHLT*CPASLC Trigger: GCAAAGAGACGCTGGACACCATGTTAGATGGGCTGG...GTGCCTGCTCCCCGGCAGAGAGAAGCCAGCAGACAGATAGCAGCACGGTCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | CTAGGTGAGTGCCACGGTGCCGGCCTGAGCTCTCCACAGCAGCACGCACAGGCGAGTCAAGGCATGAACTaGAGAAGCTTTCTTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: LGECHGAGLSSPQQHAQASQGMN*RSFLGT Trigger: TGTGCCAAGAAAGCTTCTCCAGTTCATGCCTTGACT...CGCCTGTGCGTGCTGCTGTGGAGAGCTCAGGCCGGCACCGTGGCACTCACCTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR TCA 90 bp | TCCGTTCCTCTACTGAGCCTTCTGAGTAGCAGCAGCCCCTCCATCACACTGTCTGGACAGCCATGCGGCTaGTGTTGTCAGAGGAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: SVPLLSLLSSSSPSITLSGQPCG*CCQRRF Trigger: AAACCTCCTCTGACAACATCAGCCGCATGGCTGTCC...AGACAGTGTGATGGAGGGGCTGCTGCTACTCAGAAGGCTCAGTAGAGGAACGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR TCA 90 bp | CCCTTTCTACTTTCTAGCCCGGGAATAGTGGCAAATGGTGTGTTCCAGTTTTCCAGGCCACCAGCCTGGTaGAGTGGTGCAGAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: PFLLSSPGIVANGVFQFSRPPAW*SGAEPA Trigger: TGCAGGCTCTGCACCACTTCACCAGGCTGGTGGCCT...GGAAAACTGGAACACACCATTTGCCACTATTCCCGGGCTAGAAAGTAGAAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR TCA 90 bp | ATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTGCAAGCTTGTCAGAGGAGGTTTTaGTGTCCACTCTCCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: MVCSSFPNWSCGPAGLQACQRRF*CPLSSP Trigger: TGGACTGGAGAGTGGACATCAAAACCTCCTCTGACA...AGCTTGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | CCTCTACTGAGCCTTCTGAGTAGCAGCAGCCCCTCCATCACACTGTCTGCCCACCTGGAGAAGCTTTCTTaGCACAGTTGTCGGACAACA | + |
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Preference number: 4 (lower is better) Translates to: PLLSLLSSSSPSITLSAHLEKLS*HSCRTT Trigger: TGTTGTCCGACAACTGTGCCAAGAAAGCTTCTCCAG...GTGGGCAGACAGTGTGATGGAGGGGCTGCTGCTACTCAGAAGGCTCAGTAGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | GCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGGGCTGCAGAGATCTGGTTTGCTTaGGCTTCAGCTCTCCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: ANGVFQFSELELWPSRAAEIWFA*ASALQV Trigger: GACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTC...TGCAGCCCTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CCA 90 bp | GGCCTTCTCAGAGATGGAGGCTTCTTCTCATCTTCAGGAAAAACAGGAGGAAGAAGACTAGGATCCTCCTaGATCTTCATCTGGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLLRDGGFFSSSGKTGGRRLGSS*IFIWSR Trigger: CCTGCTCCAGATGAAGATCCAGGAGGATCCTAGTCT...TCTTCCTCCTGTTTTTCCTGAAGATGAGAAGAAGCCTCCATCTCTGAGAAGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 90 bp | TCAGCAGAGGACAGGTCACGGAAGGCCACCAGCCTGGTGAAGTGGTaGAGAGCCTGCAGCAGTTGCGCTGCCTCCCCCTGGGGCACAGAC | + |
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Preference number: 5 (lower is better) Translates to: SAEDRSRKATSLVKW*RACSSCAASPWGTD Trigger: GTCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTTCACCAGGCTGGTGGCCTTCCGTGACCTGTCCTCTGCTGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | CTAATGCTGGAGGTAACCTCACTAGGTGAGTGCCACGGTGCCGGCCTGAGCTCTCAGAGCCTGCAGCAGTaGCGCTGCCTCCCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LMLEVTSLGECHGAGLSSQSLQQ*RCLPLG Trigger: CCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTG...AGAGCTCAGGCCGGCACCGTGGCACTCACCTAGTGAGGTTACCTCCAGCATTAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | CTGGTGAAGTGGTGCAGAGCCTGCAGCAGTTGCGCTGCCTCCCCCTaGGGCACAGACAAGCTGGAGCACGTCTTATCTAGGAGGCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LVKWCRACSSCAASP*GTDKLEHVLSRRLS Trigger: AGAAAGCCTCCTAGATAAGACGTGCTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTTCACCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | GAGCCTGCAGCAGTTGCGCTGCCTCCCCCTGGGGCACAGACAAGCTaGAGCACGTCTTATCTAGGAGGCTTTCTGAGTCAAGGCATGAAC | + |
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Preference number: 5 (lower is better) Translates to: EPAAVALPPPGAQTS*STSYLGGFLSQGMN Trigger: GTTCATGCCTTGACTCAGAAAGCCTCCTAGATAAGACGTGCTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 90 bp | CCCGAATGCGACCCAGCCCATCTAACATGGTGTCCAGCGTCTCTTTaGTCAGCTCCATGGTCACAGCCGAGATGGAGGGTTTCTCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: PECDPAHLTWCPASL*SAPWSQPRWRVSLH Trigger: GTGGAGAGAAACCCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCGCATTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | GAGCTAATGCTGGAGGTAACCTCACTAGGTGAGTGCCACGGTGCCGGCCTGAGCGTCGGACAACATCTTTaGAGGAGGCCTTCAGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: ELMLEVTSLGECHGAGLSVGQHL*RRPSVG Trigger: GCCTACTGAAGGCCTCCTCAAAAGATGTTGTCCGAC...GCTCAGGCCGGCACCGTGGCACTCACCTAGTGAGGTTACCTCCAGCATTAGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | CTTCTGAGTAGCAGCAGCCCCTCCATCACACTGTCTGCCCACCGTCAGCCTCTGGCCATGCGGCTGATGTaGTCAGAGGAGGTTTTGATG | + |
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Preference number: 5 (lower is better) Translates to: LLSSSSPSITLSAHRQPLAMRLM*SEEVLM Trigger: CATCAAAACCTCCTCTGACAACATCAGCCGCATGGC...CAGAGGCTGACGGTGGGCAGACAGTGTGATGGAGGGGCTGCTGCTACTCAGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | ATGTCCACTCTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTaGTTTGCTTGGGCTTCAGCTCTCCAAGTCGATATGTGCTCCACG | + |
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Preference number: 5 (lower is better) Translates to: MSTLQSRSTRRGREI*FAWASALQVDMCST Trigger: CGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTGGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | CTACAGCAGAAAGCTGGTCCCGAATGCGACCCAGCCCATCTAACATaGTGTCCAGCGTCTCTTTGCTCAGCTCCATGGTCACAGCCGAGA | + |
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Preference number: 5 (lower is better) Translates to: LQQKAGPECDPAHLT*CPASLCSAPWSQPR Trigger: TCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCGCATTCGGGACCAGCTTTCTGCTGTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | GAGCTAATGCTGGAGGTAACCTCACTAGGTGAGTGCCACGGTGCCGGCCTGAGCTTGTCAGAGGAGGTTTaGATGTCCACTCTCCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: ELMLEVTSLGECHGAGLSLSEEV*MSTLQS Trigger: GGACTGGAGAGTGGACATCAAAACCTCCTCTGACAA...GCTCAGGCCGGCACCGTGGCACTCACCTAGTGAGGTTACCTCCAGCATTAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 90 bp | CACTCTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTaGTTGGGCTTCAGCTCTCCAAGTCGATATGTGCTCCACGATGAT | + |
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Preference number: 5 (lower is better) Translates to: HSPVQVHQAWQRDLV*LGFSSPSRYVLHDD Trigger: ATCATCGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | AGAGGAGGTTTTGATGTCCACTCTCCAGTCCAGGTCCACCAGGCGTaGCAGAGAGATCTGGTTTGCTTGGGCTTCAGCTCTCCAAGTCGA | + |
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Preference number: 5 (lower is better) Translates to: RGGFDVHSPVQVHQA*QRDLVCLGFSSPSR Trigger: TCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTGGACATCAAAACCTCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | CTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTGCTTaGGCTTCAGCTCTCCAAGTCGATATGTGCTCCACGATGATTTTT | + |
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Preference number: 5 (lower is better) Translates to: LQSRSTRRGREIWFA*ASALQVDMCSTMIF Trigger: AAAAATCATCGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | CAACCCTTTCTACTTTCTAGCCCGGGAATAGTGGCAAATGGTGTGTTCCAGTTTGTGTCCAGCGTCTCTTaGCTCAGCTCCATGGTCACA | + |
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Preference number: 5 (lower is better) Translates to: QPFLLSSPGIVANGVFQFVSSVS*LSSMVT Trigger: TGTGACCATGGAGCTGAGCAAAGAGACGCTGGACAC...AAACTGGAACACACCATTTGCCACTATTCCCGGGCTAGAAAGTAGAAAGGGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 90 bp | TGGAGCACGTCTTATCTAGGAGGCTTTCTGAGTCAAGGCATGAACTaGAGAAGCTTTCTTGGCACAGTTGTCGGACAACATCTTTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: WSTSYLGGFLSQGMN*RSFLGTVVGQHLLR Trigger: CCTCAAAAGATGTTGTCCGACAACTGTGCCAAGAAAGCTTCTCCAGTTCATGCCTTGACTCAGAAAGCCTCCTAGATAAGACGTGCTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS-3UTR CAA 90 bp | AATAGTGGCAAATGGTGTGTTCCAGTTTTCCGAACTGGAGCTGTGGCCCAGCAGCAGGTTTTTGAGGTTTaGGTGGAAATTTTCCGGAAA | + |
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Preference number: 5 (lower is better) Translates to: NSGKWCVPVFRTGAVAQQQVFEV*VEIFRK Trigger: TTTCCGGAAAATTTCCACCAAAACCTCAAAAACCTG...CTGCTGGGCCACAGCTCCAGTTCGGAAAACTGGAACACACCATTTGCCACTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 72 bp | GACAGGTCACGGAAGGCCACCAGCCTGGTGAAGTGGTaGAGAGCCTGCAGCAGTTGCGCTGCCTCCCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: DRSRKATSLVKW*RACSSCAASPW Trigger: CCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTTCACCAGGCTGGTGGCCTTCCGTGACCTGTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | GAGGACAGGTCACGGAAGGCCACCAGCCTGGTGAAGTaGTGCAGAGCCTGCAGCAGTTGCGCTGCCTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: EDRSRKATSLVK*CRACSSCAASP Trigger: GGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCACTTCACCAGGCTGGTGGCCTTCCGTGACCTGTCCTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | TGGTGCAGAGCCTGCAGCAGTTGCGCTGCCTCCCCCTaGGGCACAGACAAGCTGGAGCACGTCTTATCTAGG | + |
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Preference number: 6 (lower is better) Translates to: WCRACSSCAASP*GTDKLEHVLSR Trigger: CCTAGATAAGACGTGCTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCAACTGCTGCAGGCTCTGCACCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 90 bp | AGGCAGGTGGGGACAGCCATGCGGCTGATGTTGTCAGAGGAGGTTTaGATGTCCACTCTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: RQVGTAMRLMLSEEV*MSTLQSRSTRRGRE Trigger: CTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTGGACATCAAAACCTCCTCTGACAACATCAGCCGCATGGCTGTCCCCACCTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | CGGACAACATCTTTTGAGGAGGCCTTCAGTAGGCTCTaGAGCGCCACGAAATGCTCTGCTGTCAAGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: RTTSFEEAFSRL*SATKCSAVKAA Trigger: GGCGGCCTTGACAGCAGAGCATTTCGTGGCGCTCCAGAGCCTACTGAAGGCCTCCTCAAAAGATGTTGTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | GCAGTTGCGCTGCCTCCCCCTGGGGCACAGACAAGCTaGAGCACGTCTTATCTAGGAGGCTTTCTGAGTCAA | + |
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Preference number: 6 (lower is better) Translates to: AVALPPPGAQTS*STSYLGGFLSQ Trigger: TTGACTCAGAAAGCCTCCTAGATAAGACGTGCTCCAGCTTGTCTGTGCCCCAGGGGGAGGCAGCGCAACTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | GGGACAGCCATGCGGCTGATGTTGTCAGAGGAGGTTTaGATGTCCACTCTCCAGTCCAGGTCCACCAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: GTAMRLMLSEEV*MSTLQSRSTRR Trigger: ACGCCTGGTGGACCTGGACTGGAGAGTGGACATCAAAACCTCCTCTGACAACATCAGCCGCATGGCTGTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | TGGAGCAGGCAGGTGGGGACAGCCATGCGGCTGATGTaGTCAGAGGAGGTTTTGATGTCCACTCTCCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: WSRQVGTAMRLM*SEEVLMSTLQS Trigger: GGACTGGAGAGTGGACATCAAAACCTCCTCTGACAACATCAGCCGCATGGCTGTCCCCACCTGCCTGCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | CGACCCAGCCCATCTAACATGGTGTCCAGCGTCTCTTaGCTCAGCTCCATGGTCACAGCCGAGATGGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: RPSPSNMVSSVS*LSSMVTAEMEG Trigger: ACCCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 90 bp | ATCTTCATCTGGAGCAGGCAGGTGGGGACAGCCATGCGGCTGATGTaGTCAGAGGAGGTTTTGATGTCCACTCTCCAGTCCAGGTCCACC | + |
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Preference number: 6 (lower is better) Translates to: IFIWSRQVGTAMRLM*SEEVLMSTLQSRST Trigger: GGTGGACCTGGACTGGAGAGTGGACATCAAAACCTCCTCTGACAACATCAGCCGCATGGCTGTCCCCACCTGCCTGCTCCAGATGAAGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 90 bp | TCCCGAATGCGACCCAGCCCATCTAACATGGTGTCCAGCGTCTCTTaGCTCAGCTCCATGGTCACAGCCGAGATGGAGGGTTTCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SRMRPSPSNMVSSVS*LSSMVTAEMEGFSP Trigger: TGGAGAGAAACCCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCGCATTCGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 72 bp | GTCCAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTaGTTGGGCTTCAGCTCTCCAAGTCGATATGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: VQVHQAWQRDLV*LGFSSPSRYVL Trigger: GAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 72 bp | GACCCAGCCCATCTAACATGGTGTCCAGCGTCTCTTTaGTCAGCTCCATGGTCACAGCCGAGATGGAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: DPAHLTWCPASL*SAPWSQPRWRV Trigger: AACCCTCCATCTCGGCTGTGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | AGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTGCTTaGGCTTCAGCTCTCCAAGTCGATATGTGCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: RSTRRGREIWFA*ASALQVDMCST Trigger: CGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | CTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTaGTTTGCTTGGGCTTCAGCTCTCCAAGTCGATATG | + |
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Preference number: 6 (lower is better) Translates to: LQSRSTRRGREI*FAWASALQVDM Trigger: CATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | CAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTGCTaGGGCTTCAGCTCTCCAAGTCGATATGTGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: QVHQAWQRDLVC*GFSSPSRYVLH Trigger: GTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | TTTGATGTCCACTCTCCAGTCCAGGTCCACCAGGCGTaGCAGAGAGATCTGGTTTGCTTGGGCTTCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FDVHSPVQVHQA*QRDLVCLGFSS Trigger: AGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGAGTGGACATCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CCA 72 bp | AAAGCTGGTCCCGAATGCGACCCAGCCCATCTAACATaGTGTCCAGCGTCTCTTTGCTCAGCTCCATGGTCA | + |
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Preference number: 6 (lower is better) Translates to: KAGPECDPAHLT*CPASLCSAPWS Trigger: TGACCATGGAGCTGAGCAAAGAGACGCTGGACACCATGTTAGATGGGCTGGGTCGCATTCGGGACCAGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | AGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTaGCTTGGGCTTCAGCTCTCCAAGTCGATATGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SPGPPGVAERSG*LGLQLSKSICA Trigger: AGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 90 bp | TCTCCAGTCCAGGTCCACCAGGCGTGGCAGAGAGATCTGGTTTGCTaGGGCTTCAGCTCTCCAAGTCGATATGTGCTCCACGATGATTTT | + |
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Preference number: 6 (lower is better) Translates to: SPVQVHQAWQRDLVC*GFSSPSRYVLHDDF Trigger: AAAATCATCGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCAGATCTCTCTGCCACGCCTGGTGGACCTGGACTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 72 bp | AGAAGCTTTCTTGGCACAGTTGTCGGACAACATCTTTaGAGGAGGCCTTCAGTAGGCTCTGGAGCGCCACGA | + |
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Preference number: 6 (lower is better) Translates to: RSFLGTVVGQHL*RRPSVGSGAPR Trigger: TCGTGGCGCTCCAGAGCCTACTGAAGGCCTCCTCAAAAGATGTTGTCCGACAACTGTGCCAAGAAAGCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS CAA 90 bp | ATGAACTGGAGAAGCTTTCTTGGCACAGTTGTCGGACAACATCTTTaGAGGAGGCCTTCAGTAGGCTCTGGAGCGCCACGAAATGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: MNWRSFLGTVVGQHL*RRPSVGSGAPRNAL Trigger: CAGAGCATTTCGTGGCGCTCCAGAGCCTACTGAAGGCCTCCTCAAAAGATGTTGTCCGACAACTGTGCCAAGAAAGCTTCTCCAGTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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| CDS GCA 72 bp | TGGTTTGCTTGGGCTTCAGCTCTCCAAGTCGATATGTaGTCCACGATGATTTTTGTCAGCAGGTTTTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: WFAWASALQVDM*STMIFVSRFLR Trigger: CCTCAAAAACCTGCTGACAAAAATCATCGTGGAGCACATATCGACTTGGAGAGCTGAAGCCCAAGCAAACCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028584.8 |
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