Pregenerated sensors for COMMD8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029213Ensembl transcript IDs: ENSMUST00000013693.11, ENSMUST00000196241.2, ENSMUST00000199767.5
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTGCTATGTCGCAGCCCATAGAGCAGCCTTGTCTGAGGCTGCCTaGAGCCGTAGGAGGAGAACAGTAGTCATCACCGCTCCCGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: HCYVAAHRAALSEAA*SRRRRTVVITAPGC Trigger: ACAGCCGGGAGCGGTGATGACTACTGTTCTCCTCCTACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | AGCCTGATGGAGCATCCACCCGCTGAATATGGACAGCACTCCCTCTaGCACGGTGCAGCACTGAAATCTGAGGTGTTGATGGTCACCATT | + |
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Preference number: 1 (lower is better) Translates to: SLMEHPPAEYGQHSL*HGAALKSEVLMVTI Trigger: AATGGTGACCATCAACACCTCAGATTTCAGTGCTGCACCGTGGCAGAGGGAGTGCTGTCCATATTCAGCGGGTGGATGCTCCATCAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR TCA 90 bp | TGCAATTTCCTGTCCCTTAGGGTTTCTGACGGATTTCCATCTCTGTaGTCTCAGAGCTGCTGCCTGCTCAGCCTGATGGAGCATCCACCC | + |
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Preference number: 1 (lower is better) Translates to: CNFLSLRVSDGFPSL*SQSCCLLSLMEHPP Trigger: GGGTGGATGCTCCATCAGGCTGAGCAGGCAGCAGCTCTGAGATCACAGAGATGGAAATCCGTCAGAAACCCTAAGGGACAGGAAATTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CCA 90 bp | CTAGTCCAGGCTGAACACAGCTATCCCCACCCAAAGAGAAGAGCCTaGGACAAGAAAGTCACTTCACAGTGTGGAAATCTAACAGGCGTT | + |
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Preference number: 1 (lower is better) Translates to: LVQAEHSYPHPKRRA*DKKVTSQCGNLTGV Trigger: AACGCCTGTTAGATTTCCACACTGTGAAGTGACTTTCTTGTCCCAGGCTCTTCTCTTTGGGTGGGGATAGCTGTGTTCAGCCTGGACTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| 3UTR CCA 90 bp | TCAATCAAACTGTGTGCCAATCAGAAAAGCTGTGCAACAGGCTGTTaGGGGTGGAAGAGAACAAGGTATTCTCCTATGAAGGGCTGCCCT | + |
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Preference number: 1 (lower is better) Translates to: SIKLCANQKSCATGC*GWKRTRYSPMKGCP Trigger: AGGGCAGCCCTTCATAGGAGAATACCTTGTTCTCTTCCACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTGGCACACAGTTTGATTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | TCACTAGAAAGCGCGAGCTTTAACTGCCAATCAAAATCCTGCAGCTaGGCACAAGAAATATCAACTATTTCCCCCAACAGGGCCTGCTTG | + |
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Preference number: 1 (lower is better) Translates to: SLESASFNCQSKSCS*AQEISTISPNRACL Trigger: CAAGCAGGCCCTGTTGGGGGAAATAGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCTTTCTAGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | ATCTTGTCACTAGAAAGCGCGAGCTTTAACTGCCAATCAAAATCCTaGAGCTGCGCACAAGAAATATCAACTATTTCCCCCAACAGGGCC | + |
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Preference number: 1 (lower is better) Translates to: ILSLESASFNCQSKS*SCAQEISTISPNRA Trigger: GGCCCTGTTGGGGGAAATAGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCTTTCTAGTGACAAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | CTGAAATCTGAGGTGTTGATGGTCACCATTTCCAGTTATTTTAACTaGAGGACCACCTTATTAGCGGCCTCCAAGGAGCTGATCAGACTC | + |
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Preference number: 1 (lower is better) Translates to: LKSEVLMVTISSYFN*RTTLLAASKELIRL Trigger: GAGTCTGATCAGCTCCTTGGAGGCCGCTAATAAGGTGGTCCTGCAGTTAAAATAACTGGAAATGGTGACCATCAACACCTCAGATTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | GTGAAAACACGGGCTGTGACTTCAGCTCTTTCTTCTTTCATCCTATaGACTTCCTATCAGTCATGCAATTTCCTGTCCCTTAGGGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: VKTRAVTSALSSFIL*TSYQSCNFLSLRVS Trigger: AGAAACCCTAAGGGACAGGAAATTGCATGACTGATAGGAAGTGCATAGGATGAAAGAAGAAAGAGCTGAAGTCACAGCCCGTGTTTTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR TCA 90 bp | GACTATCGAGGACAAGAGAAAGCTTGCATGTGGGCCTGTATTCCTTaGCTACGGAGATGCTTTCATGAGTATCTGTTGGTCAAATGTATT | + |
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Preference number: 1 (lower is better) Translates to: DYRGQEKACMWACIP*LRRCFHEYLLVKCI Trigger: AATACATTTGACCAACAGATACTCATGAAAGCATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCTCGATAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | ATCTGCAAGGTGGCAATCTTGTCACTAGAAAGCGCGAGCTTTAACTaGCAATCAAAATCCTGCAGCTGCGCACAAGAAATATCAACTATT | + |
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Preference number: 1 (lower is better) Translates to: ICKVAILSLESASFN*QSKSCSCAQEISTI Trigger: AATAGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCTTTCTAGTGACAAGATTGCCACCTTGCAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR GCA 90 bp | CCTGGCTATGTCACTCCAAAGACACCATTTCTTCATTACATGATATaGACACAAATGCTCATAGCATTCTCTTCACTAGGACAAGCAAAT | + |
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Preference number: 1 (lower is better) Translates to: PGYVTPKTPFLHYMI*TQMLIAFSSLGQAN Trigger: ATTTGCTTGTCCTAGTGAAGAGAATGCTATGAGCATTTGTGTGCATATCATGTAATGAAGAAATGGTGTCTTTGGAGTGACATAGCCAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CCA 90 bp | GGGCCTGTATTCCTTGACTACGGAGATGCTTTCATGAGTATCTGTTaGTCAAATGTATTGAACCAACACTTTAAATATGGACATTATAGT | + |
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Preference number: 1 (lower is better) Translates to: GPVFLDYGDAFMSIC*SNVLNQHFKYGHYS Trigger: ACTATAATGTCCATATTTAAAGTGTTGGTTCAATACATTTGACCAACAGATACTCATGAAAGCATCTCCGTAGTCAAGGAATACAGGCCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | TTGAGTTCTAGGACAGCCCAGGCAGCAGTTAAGGCCCTGTCCAAGAACAAAGAAGCTGCCTGCTCAGCCTaGTGGAGCATCCACCCGCTG | + |
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Preference number: 2 (lower is better) Translates to: LSSRTAQAAVKALSKNKEAACSA*WSIHPL Trigger: CAGCGGGTGGATGCTCCATCAGGCTGAGCAGGCAGC...TTCTTTGTTCTTGGACAGGGCCTTAACTGCTGCCTGGGCTGTCCTAGAACTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TCCACACCCGAATTTCTTGATGAGAAAAGCAGCACACTGAGAACCCGCTGGCCCGGACAGCACTCCCTCTaGCACGGTGCAGCACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: STPEFLDEKSSTLRTRWPGQHSL*HGAALK Trigger: TTTCAGTGCTGCACCGTGGCAGAGGGAGTGCTGTCC...GGGCCAGCGGGTTCTCAGTGTGCTGCTTTTCTCATCAAGAAATTCGGGTGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CAA 90 bp | AGCTCCTTTCCTAATCACTGCTATGTCGCAGCCCATAGAGCAGCCTaGTCTGAGGCTGCCTGCAGCCGTAGGAGGAGAACAGTAGTCATC | + |
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Preference number: 2 (lower is better) Translates to: SSFPNHCYVAAHRAA*SEAACSRRRRTVVI Trigger: GATGACTACTGTTCTCCTCCTACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGTGATTAGGAAAGGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | TTGAGTTCTAGGACAGCCCAGGCAGCAGTTAAGGCCCTGTCCAAGAACAAAGAAGAAGTGCAGCAGAAGTaGCCAAGGGTGAACGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: LSSRTAQAAVKALSKNKEEVQQK*PRVNAQ Trigger: CTGGGCGTTCACCCTTGGTCACTTCTGCTGCACTTC...TTCTTTGTTCTTGGACAGGGCCTTAACTGCTGCCTGGGCTGTCCTAGAACTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | CACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGGACAAGCAAATGTTaGAACCACCAAAAAGCTACC | + |
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Preference number: 2 (lower is better) Translates to: HSGGRGRRISEFEASLVYRTSKC*NHQKAT Trigger: GGTAGCTTTTTGGTGGTTTCAACATTTGCTTGTCCT...GTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | CCACTTTCCACACCCGAATTTCTTGATGAGAAAAGCAGCACACTGAGAACCCGCTTGTCTGAGGCTGCCTaGAGCCGTAGGAGGAGAACA | + |
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Preference number: 2 (lower is better) Translates to: PLSTPEFLDEKSSTLRTRLSEAA*SRRRRT Trigger: TGTTCTCCTCCTACGGCTGCAGGCAGCCTCAGACAA...GCGGGTTCTCAGTGTGCTGCTTTTCTCATCAAGAAATTCGGGTGTGGAAAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | TCCACACCCGAATTTCTTGATGAGAAAAGCAGCACACTGAGAACCCGCTGGCCCTGCAGCACTGAAATCTaGGGTGTTGATGGTCACCAT | + |
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Preference number: 2 (lower is better) Translates to: STPEFLDEKSSTLRTRWPCSTEI*GVDGHH Trigger: ATGGTGACCATCAACACCTCAGATTTCAGTGCTGCA...GGGCCAGCGGGTTCTCAGTGTGCTGCTTTTCTCATCAAGAAATTCGGGTGTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | GCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATGCTTATTTTCAGTGCTGCCTGCTCAGCCTaGTGGAGCATCCACCCGCTG | + |
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Preference number: 2 (lower is better) Translates to: ATQEETTSLYLFRMLIFSAACSA*WSIHPL Trigger: CAGCGGGTGGATGCTCCATCAGGCTGAGCAGGCAGC...ACTGAAAATAAGCATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | TGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGACCAGGCCTGATACATTGTCAGACTGGAGCCTTATaGAGCCACAGAACTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: CPERKEAIETAGPGLIHCQTGAL*SHRTAH Trigger: GTGTGCAGTTCTGTGGCTCCATAAGGCTCCAGTCTG...ACAATGTATCAGGCCTGGTCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CAA 90 bp | GTCAATCAAACTGTGTGCCAATCAGAAAAGCTGTGCAACAGGCTGTaGGGGGTGGAAGAGAACAAGGTATTCTCCTATGAAGGGCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: VNQTVCQSEKLCNRL*GVEENKVFSYEGLP Trigger: GGGCAGCCCTTCATAGGAGAATACCTTGTTCTCTTCCACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTGGCACACAGTTTGATTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CAA 90 bp | GGACAGCACTCCCTCTGCCACGGTGCAGCACTGAAATCTGAGGTGTaGATGGTCACCATTTCCAGTTATTTTAACTGCAGGACCACCTTA | + |
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Preference number: 2 (lower is better) Translates to: GQHSLCHGAALKSEV*MVTISSYFNCRTTL Trigger: TAAGGTGGTCCTGCAGTTAAAATAACTGGAAATGGTGACCATCAACACCTCAGATTTCAGTGCTGCACCGTGGCAGAGGGAGTGCTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | AGACAAAGCGATCACTGTGAAAACACGGGCTGTGACTTCAGCTCTTTCTTCTTTGGACAGCACTCCCTCTaGCACGGTGCAGCACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: RQSDHCENTGCDFSSFFFGQHSL*HGAALK Trigger: TTTCAGTGCTGCACCGTGGCAGAGGGAGTGCTGTCC...AAAGAAGAAAGAGCTGAAGTCACAGCCCGTGTTTTCACAGTGATCGCTTTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | AACTGTGTGCCAATCAGAAAAGCTGTGCAACAGGCTGTTGGGGGTGGAAGAGAACATTGTTCCACAAGCTaGCAATGCTCCGTGCTGACT | + |
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Preference number: 2 (lower is better) Translates to: NCVPIRKAVQQAVGGGREHCSTS*QCSVLT Trigger: AGTCAGCACGGAGCATTGGCAGCTTGTGGAACAATG...TTCTCTTCCACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTGGCACACAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | TTTGGAGGCAGACTAAGCTTGGTTGGAAAACACGGTGTCCTGCACCATTACCAATGTGCAACAGGCTGTTaGGGGTGGAAGAGAACAAGG | + |
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Preference number: 2 (lower is better) Translates to: FGGRLSLVGKHGVLHHYQCATGC*GWKRTR Trigger: CCTTGTTCTCTTCCACCCCCAACAGCCTGTTGCACA...TTGGTAATGGTGCAGGACACCGTGTTTTCCAACCAAGCTTAGTCTGCCTCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TTTGGAGGCAGACTAAGCTTGGTTGGAAAACACGGTGTCCTGCACCATTACCAACAATCAGAAAAGCTGTaGAACAGGCTGTTGGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: FGGRLSLVGKHGVLHHYQQSEKL*NRLLGV Trigger: CACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTG...TTGGTAATGGTGCAGGACACCGTGTTTTCCAACCAAGCTTAGTCTGCCTCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGACCAGGCCTGATACATTGTGGACAAGAGAAAGCTTaGATGTGGGCCTGTATTCCT | + |
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Preference number: 2 (lower is better) Translates to: CPERKEAIETAGPGLIHCGQEKA*MWACIP Trigger: AGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCC...ACAATGTATCAGGCCTGGTCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | GTGACTGTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTGCTCTTCCAGACACACTAAGGGAAGGTaGATCAGAATGCTAACAAAC | + |
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Preference number: 2 (lower is better) Translates to: VTVRNTMRGLESTDCSSRHTKGR*IRMLTN Trigger: GTTTGTTAGCATTCTGATCCACCTTCCCTTAGTGTG...TCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAACAGTCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | TATTCTCCTATGAAGGGCTGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGAAAATCAGTAACTGCGTaGACATACCGCATAGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: YSPMKGCPERKEAIETAGKSVTA*TYRIGP Trigger: TGGACCTATGCGGTATGTTCACGCAGTTACTGATTT...TCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCAGCCCTTCATAGGAGAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | ACTGACTGCTCTTCCAGAGGGTCTGAAGATAGCTATAGTGTACTCCTTTACATGTGCAGCACTGAAATCTaGGGTGTTGATGGTCACCAT | + |
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Preference number: 2 (lower is better) Translates to: TDCSSRGSEDSYSVLLYMCSTEI*GVDGHH Trigger: ATGGTGACCATCAACACCTCAGATTTCAGTGCTGCA...CATGTAAAGGAGTACACTATAGCTATCTTCAGACCCTCTGGAAGAGCAGTCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR TCA 90 bp | TGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGACCAGGCCTGATACATTGTTATTTGGGAAGTCACTaGAATCAAGCAACACAGGAA | + |
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Preference number: 2 (lower is better) Translates to: CPERKEAIETAGPGLIHCYLGSH*NQATQE Trigger: TTCCTGTGTTGCTTGATTTCAGTGACTTCCCAAATA...ACAATGTATCAGGCCTGGTCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TCGAGGACAAGAGAAAGCTTGCATGTGGGCCTGTATTCCTTGACTACGGAGATGTCAAAATCCTGCAGCTaGGCACAAGAAATATCAACT | + |
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Preference number: 2 (lower is better) Translates to: SRTRESLHVGLYSLTTEMSKSCS*AQEIST Trigger: AGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGA...CATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCTCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TTTGGAGGCAGACTAAGCTTGGTTGGAAAACACGGTGTCCTGCACCATTACCAATGCCAATCAAAATCCTaGAGCTGCGCACAAGAAATA | + |
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Preference number: 2 (lower is better) Translates to: FGGRLSLVGKHGVLHHYQCQSKS*SCAQEI Trigger: TATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCA...TTGGTAATGGTGCAGGACACCGTGTTTTCCAACCAAGCTTAGTCTGCCTCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGACAGACTGGAGCCTTATaGAGCCACAGAACTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: GRWIRMLTNKREWNMSNRQTGAL*SHRTAH Trigger: GTGTGCAGTTCTGTGGCTCCATAAGGCTCCAGTCTG...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CAA 90 bp | ACATTGTTCCACAAGCTGCCAATGCTCCGTGCTGACTTAATAAACTaGCCTAACAAGGAAATCAGTAACTGCGTGAACATACCGCATAGG | + |
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Preference number: 2 (lower is better) Translates to: TLFHKLPMLRADLIN*PNKEISNCVNIPHR Trigger: CCTATGCGGTATGTTCACGCAGTTACTGATTTCCTTGTTAGGCAAGTTTATTAAGTCAGCACGGAGCATTGGCAGCTTGTGGAACAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | CATGCATGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAACATTGTTCCACAAGCTaGCAATGCTCCGTGCTGACT | + |
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Preference number: 2 (lower is better) Translates to: HACWLISAIQLFRKLKPEHCSTS*QCSVLT Trigger: AGTCAGCACGGAGCATTGGCAGCTTGTGGAACAATG...TTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCATGCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAAGACTGTCAATCAGAAAAGCTGTaGAACAGGCTGTTGGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: CWLISAIQLFRKLKPEDCQSEKL*NRLLGV Trigger: CACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTG...ACAGTCTTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | GTGACTGTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTGCTCTTCCAGACAAAGTACTGGCATGTaGAATAAGAGTAACTTGAAA | + |
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Preference number: 2 (lower is better) Translates to: VTVRNTMRGLESTDCSSRQSTGM*NKSNLK Trigger: TTTCAAGTTACTCTTATTGCACATGCCAGTACTTTG...TCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAACAGTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | TCGAGGACAAGAGAAAGCTTGCATGTGGGCCTGTATTCCTTGACTACGGAGATGTGTTATTGTTTGTTTTaGAGGCAGACTAAGCTTGGT | + |
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Preference number: 2 (lower is better) Translates to: SRTRESLHVGLYSLTTEMCYCLF*RQTKLG Trigger: ACCAAGCTTAGTCTGCCTCCAAAACAAACAATAACA...CATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCTCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR-3UTR GCA 90 bp | CATGCATGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAAAGCGCGAGCTTTAACTaGCAATCAAAATCCTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: HACWLISAIQLFRKLKPESASFN*QSKSCS Trigger: GCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCT...TTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCATGCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGAACAGGCTGTTGGGGGTaGAAGAGAACAAGGTATTCT | + |
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Preference number: 2 (lower is better) Translates to: GRWIRMLTNKREWNMSNRTGCWG*KRTRYS Trigger: AGAATACCTTGTTCTCTTCCACCCCCAACAGCCTGT...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| 3UTR CAA 90 bp | AAAAACAAAAAGATCCTGGAGTATGGAACGGAGTATCCGAAGGCCTaGCATTTAGAAAGGAACTGTCAGAGCACAGTGCTAAGAAACAAG | + |
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Preference number: 2 (lower is better) Translates to: KNKKILEYGTEYPKA*HLERNCQSTVLRNK Trigger: CTTGTTTCTTAGCACTGTGCTCTGACAGTTCCTTTCTAAATGCAAGGCCTTCGGATACTCCGTTCCATACTCCAGGATCTTTTTGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| 3UTR-3UTR GCA 90 bp | TCACTGAAATCAAGCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATTTCAAAAGGGGCATCTaGAAGGTGGCAATCTTGTCA | + |
|
Preference number: 2 (lower is better) Translates to: SLKSSNTGRDDQLVFVQNFKRGI*KVAILS Trigger: TGACAAGATTGCCACCTTGCAGATGCCCCTTTTGAA...ATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGCTTGATTTCAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR-3UTR TCA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGAACGGAGATGCTTTCATaGGTATCTGTTGGTCAAATG | + |
|
Preference number: 2 (lower is better) Translates to: GRWIRMLTNKREWNMSNRTEMLS*VSVGQM Trigger: CATTTGACCAACAGATACTCATGAAAGCATCTCCGT...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR GCA 90 bp | GCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATGCTTATTTTCAGTACTTCCTATCAGTCATaGAATTTCCTGTCCCTTAGG | + |
|
Preference number: 2 (lower is better) Translates to: ATQEETTSLYLFRMLIFSTSYQS*NFLSLR Trigger: CCTAAGGGACAGGAAATTGCATGACTGATAGGAAGT...ACTGAAAATAAGCATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR GCA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGAACTTCCTATCAGTCATaGAATTTCCTGTCCCTTAGG | + |
|
Preference number: 2 (lower is better) Translates to: GRWIRMLTNKREWNMSNRTSYQS*NFLSLR Trigger: CCTAAGGGACAGGAAATTGCATGACTGATAGGAAGT...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR TCA 90 bp | TCACTGAAATCAAGCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATTGGTCTCCCAAGAAGTaGGGATGTGAAAATAACAAT | + |
|
Preference number: 2 (lower is better) Translates to: SLKSSNTGRDDQLVFVQNWSPKK*GCENNN Trigger: ATTGTTATTTTCACATCCTCACTTCTTGGGAGACCA...ATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGCTTGATTTCAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR TCA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGATGGTCTCCCAAGAAGTaGGGATGTGAAAATAACAAT | + |
|
Preference number: 2 (lower is better) Translates to: GRWIRMLTNKREWNMSNRWSPKK*GCENNN Trigger: ATTGTTATTTTCACATCCTCACTTCTTGGGAGACCA...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR TCA 90 bp | GCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATGCTTATTTTCAGTCAGATGTTTAATAAATaGGACAAAGCGATCACTGTG | + |
|
Preference number: 2 (lower is better) Translates to: ATQEETTSLYLFRMLIFSQMFNK*DKAITV Trigger: CACAGTGATCGCTTTGTCTCATTTATTAAACATCTG...ACTGAAAATAAGCATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | GTCGCAGCCCATAGAGCAGCCTTGTCTGAGGCTGCCTaGAGCCGTAGGAGGAGAACAGTAGTCATCACCGCT | + |
|
Preference number: 3 (lower is better) Translates to: VAAHRAALSEAA*SRRRRTVVITA Trigger: AGCGGTGATGACTACTGTTCTCCTCCTACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR TCA 72 bp | ATGAGGAGCAGAGCTCCCCATGGCTCTAGTCCAGGCTaGACACAGCTATCCCCACCCAAAGAGAAGAGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: MRSRAPHGSSPG*TQLSPPKEKSL Trigger: CAGGCTCTTCTCTTTGGGTGGGGATAGCTGTGTTCAGCCTGGACTAGAGCCATGGGGAGCTCTGCTCCTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| 3UTR-3UTR CAA 90 bp | GTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTGCTCTTCCAGAGGGTCTTGCAAGGTGGCAATCTaGTCACTAGAAAGCGCGAGC | + |
|
Preference number: 3 (lower is better) Translates to: VRNTMRGLESTDCSSRGSCKVAI*SLESAS Trigger: GCTCGCGCTTTCTAGTGACAAGATTGCCACCTTGCA...AGACCCTCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR TCA 72 bp | CCACACCCGAATTTCTTGATGAGAAAAGCAGCACACTaGGAACCCGCTGGCCCAAGCTCCTTTCCTAATCAC | + |
|
Preference number: 3 (lower is better) Translates to: PHPNFLMRKAAH*EPAGPSSFPNH Trigger: GTGATTAGGAAAGGAGCTTGGGCCAGCGGGTTCTCAGTGTGCTGCTTTTCTCATCAAGAAATTCGGGTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | GCCAATCAGAAAAGCTGTGCAACAGGCTGTTGGGGGTaGAAGAGAACAAGGTATTCTCCTATGAAGGGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: ANQKSCATGCWG*KRTRYSPMKGC Trigger: GCAGCCCTTCATAGGAGAATACCTTGTTCTCTTCCACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | GAGAAGAGCCTGGGACAAGAAAGTCACTTCACAGTGTaGAAATCTAACAGGCGTTGCCTTCCCACCGTGGTT | + |
|
Preference number: 3 (lower is better) Translates to: EKSLGQESHFTV*KSNRRCLPTVV Trigger: AACCACGGTGGGAAGGCAACGCCTGTTAGATTTCCACACTGTGAAGTGACTTTCTTGTCCCAGGCTCTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| 3UTR-3UTR CAA 90 bp | CATGCATGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAAGCCCATAGAGCAGCCTaGTCTGAGGCTGCCTGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: HACWLISAIQLFRKLKPEAHRAA*SEAACS Trigger: GCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGC...TTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCATGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | TCGAGGACAAGAGAAAGCTTGCATGTGGGCCTGTATTCCTTGACTACGGAGATGACCAGGCCTGATACATaGTTCCACAAGCTGCCAATG | + |
|
Preference number: 3 (lower is better) Translates to: SRTRESLHVGLYSLTTEMTRPDT*FHKLPM Trigger: CATTGGCAGCTTGTGGAACAATGTATCAGGCCTGGT...CATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCTCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | TGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGACCAGGCCTGATACATTGTACCAGGCCTGATACATaGTTCCACAAGCTGCCAATG | + |
|
Preference number: 3 (lower is better) Translates to: CPERKEAIETAGPGLIHCTRPDT*FHKLPM Trigger: CATTGGCAGCTTGTGGAACAATGTATCAGGCCTGGT...ACAATGTATCAGGCCTGGTCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | TTGAGTTCTAGGACAGCCCAGGCAGCAGTTAAGGCCCTGTCCAAGAACAAAGAAAGGACAAGAGAAAGCTaGCATGTGGGCCTGTATTCC | + |
|
Preference number: 3 (lower is better) Translates to: LSSRTAQAAVKALSKNKERTRES*HVGLYS Trigger: GGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCT...TTCTTTGTTCTTGGACAGGGCCTTAACTGCTGCCTGGGCTGTCCTAGAACTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR TCA 72 bp | GAAGAGAACAAGGTATTCTCCTATGAAGGGCTGCCCTaGAAGGAAGGAAGCAATAGAGACTGCTGGACCAGG | + |
|
Preference number: 3 (lower is better) Translates to: EENKVFSYEGLP*KEGSNRDCWTR Trigger: CCTGGTCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCAGCCCTTCATAGGAGAATACCTTGTTCTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | GAAAGTCACTTCACAGTGTGGAAATCTAACAGGCGTTaGCTTCCCACCGTGGTTACAGTCGCATCAGGTCAT | + |
|
Preference number: 3 (lower is better) Translates to: ESHFTVWKSNRR*LPTVVTVASGH Trigger: ATGACCTGATGCGACTGTAACCACGGTGGGAAGGCAACGCCTGTTAGATTTCCACACTGTGAAGTGACTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| 3UTR-3UTR CAA 90 bp | TTGAGTTCTAGGACAGCCCAGGCAGCAGTTAAGGCCCTGTCCAAGAACAAAGAACCACACCCGAATTTCTaGATGAGAAAAGCAGCACAC | + |
|
Preference number: 3 (lower is better) Translates to: LSSRTAQAAVKALSKNKEPHPNF*MRKAAH Trigger: GTGTGCTGCTTTTCTCATCAAGAAATTCGGGTGTGG...TTCTTTGTTCTTGGACAGGGCCTTAACTGCTGCCTGGGCTGTCCTAGAACTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | GTGACTGTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTGCTCTTCCAGAGTGTACGGTTTCACTTaGTCATCTTCCTTCACATCC | + |
|
Preference number: 3 (lower is better) Translates to: VTVRNTMRGLESTDCSSRVYGFT*SSSFTS Trigger: GGATGTGAAGGAAGATGACAAAGTGAAACCGTACAC...TCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAACAGTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | GTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTaGTCTTCCAGAGGGTCTGAAGATAGCTATAGTGTA | + |
|
Preference number: 3 (lower is better) Translates to: VRNTMRGLESTD*SSRGSEDSYSV Trigger: TACACTATAGCTATCTTCAGACCCTCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | GCTGAACACAGCTATCCCCACCCAAAGAGAAGAGCCTaGGACAAGAAAGTCACTTCACAGTGTGGAAATCTA | + |
|
Preference number: 3 (lower is better) Translates to: AEHSYPHPKRRA*DKKVTSQCGNL Trigger: TAGATTTCCACACTGTGAAGTGACTTTCTTGTCCCAGGCTCTTCTCTTTGGGTGGGGATAGCTGTGTTCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| 3UTR TCA 72 bp | GGACAAGAGAAAGCTTGCATGTGGGCCTGTATTCCTTaGCTACGGAGATGCTTTCATGAGTATCTGTTGGTC | + |
|
Preference number: 3 (lower is better) Translates to: GQEKACMWACIP*LRRCFHEYLLV Trigger: GACCAACAGATACTCATGAAAGCATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | TGTGTCAATCAAACTGTGTGCCAATCAGAAAAGCTGTaGAACAGGCTGTTGGGGGTGGAAGAGAACAAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: CVNQTVCQSEKL*NRLLGVEENKV Trigger: TACCTTGTTCTCTTCCACCCCCAACAGCCTGTTGCACAGCTTTTCTGATTGGCACACAGTTTGATTGACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | GCTGAAACCAGGAAGACCTGTCACACTAAGGGAAGGTaGATCAGAATGCTAACAAACAAGCGGGAATGGAAT | + |
|
Preference number: 3 (lower is better) Translates to: AETRKTCHTKGR*IRMLTNKREWN Trigger: ATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCCCTTAGTGTGACAGGTCTTCCTGGTTTCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | CAGTGTGGAAATCTAACAGGCGTTGCCTTCCCACCGTaGTTACAGTCGCATCAGGTCATAAATCATGTGATA | + |
|
Preference number: 3 (lower is better) Translates to: QCGNLTGVAFPP*LQSHQVINHVI Trigger: TATCACATGATTTATGACCTGATGCGACTGTAACCACGGTGGGAAGGCAACGCCTGTTAGATTTCCACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| 3UTR GCA 72 bp | CTAGAAAGCGCGAGCTTTAACTGCCAATCAAAATCCTaGAGCTGCGCACAAGAAATATCAACTATTTCCCCC | + |
|
Preference number: 3 (lower is better) Translates to: LESASFNCQSKS*SCAQEISTISP Trigger: GGGGGAAATAGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCTTTCTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | CATGCATGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAAAGGACAAGAGAAAGCTaGCATGTGGGCCTGTATTCC | + |
|
Preference number: 3 (lower is better) Translates to: HACWLISAIQLFRKLKPERTRES*HVGLYS Trigger: GGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCT...TTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCATGCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR TCA 72 bp | ATTCTGTACCAACAAGTGAGCTATTTGGGAAGTCACTaGAATCAAGCAACACAGGAAGAGACGACCAGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: ILYQQVSYLGSH*NQATQEETTSL Trigger: CAAGCTGGTCGTCTCTTCCTGTGTTGCTTGATTTCAGTGACTTCCCAAATAGCTCACTTGTTGGTACAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | TGTTATTGTTTGTTTTGGAGGCAGACTAAGCTTGGTTaGAAAACACGGTGTCCTGCACCATTACCAACAGTA | + |
|
Preference number: 3 (lower is better) Translates to: CYCLFWRQTKLG*KTRCPAPLPTV Trigger: TACTGTTGGTAATGGTGCAGGACACCGTGTTTTCCAACCAAGCTTAGTCTGCCTCCAAAACAAACAATAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | CTTTCTTCTTTCATCCTATGCACTTCCTATCAGTCATaGAATTTCCTGTCCCTTAGGGTTTCTGACGGATTT | + |
|
Preference number: 3 (lower is better) Translates to: LSSFILCTSYQS*NFLSLRVSDGF Trigger: AAATCCGTCAGAAACCCTAAGGGACAGGAAATTGCATGACTGATAGGAAGTGCATAGGATGAAAGAAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | CATGCATGCTGGCTGATATCAGCAATCCAATTATTTAGAAAGCTGAAGCCAGAATACATGTCTTGCTGTTaGCATTTAAGAACAGTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: HACWLISAIQLFRKLKPEYMSCC*HLRTVQ Trigger: CTGGACTGTTCTTAAATGCAAACAGCAAGACATGTA...TTCTGGCTTCAGCTTTCTAAATAATTGGATTGCTGATATCAGCCAGCATGCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR-3UTR CAA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGATTGGCTTGTTATTGTTaGTTTTGGAGGCAGACTAAG | + |
|
Preference number: 3 (lower is better) Translates to: GRWIRMLTNKREWNMSNRLACYC*FWRQTK Trigger: CTTAGTCTGCCTCCAAAACAAACAATAACAAGCCAA...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CCA 72 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATaGAATATGAGTAATAGAAAGATAAGTATGAGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: GRWIRMLTNKRE*NMSNRKISMSL Trigger: TAGGCTCATACTTATCTTTCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR GCA 72 bp | TTGCTGTTTGCATTTAAGAACAGTCCAGCGTGTCTGTaGTCTGTGTGTTTACATTACTTCAGAACTTATTTT | + |
|
Preference number: 3 (lower is better) Translates to: LLFAFKNSPACL*SVCLHYFRTYF Trigger: AAAATAAGTTCTGAAGTAATGTAAACACACAGAGCACAGACACGCTGGACTGTTCTTAAATGCAAACAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CAA 72 bp | CCTAATCACTGCTATGTCGCAGCCCATAGAGCAGCCTaGTCTGAGGCTGCCTGCAGCCGTAGGAGGAGAACA | + |
|
Preference number: 4 (lower is better) Translates to: PNHCYVAAHRAA*SEAACSRRRRT Trigger: TGTTCTCCTCCTACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGTGATTAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| CDS-3UTR GCA 90 bp | ACTGCTATGTCGCAGCCCATAGAGCAGCCTTGTCTGAGGCTGCCTGCAGCCGTAAGCGCGAGCTTTAACTaGCAATCAAAATCCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TAMSQPIEQPCLRLPAAVSASFN*QSKSCS Trigger: GCTGCAGGATTTTGATTGGCAGTTAAAGCTCGCGCT...TACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| CDS-3UTR CCA 90 bp | CACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACGAAAGACTGGCAAACTaGACTGCATTAACCTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HSGGRGRRISEFEASLVYERLAN*TALTSE Trigger: TTCTGAGGTTAATGCAGTCCAGTTTGCCAGTCTTTC...GTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR CAA 72 bp | GCCCAGGGATGGAGACTATCGAGGACAAGAGAAAGCTaGCATGTGGGCCTGTATTCCTTGACTACGGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: AQGWRLSRTRES*HVGLYSLTTEM Trigger: CATCTCCGTAGTCAAGGAATACAGGCCCACATGCAAGCTTTCTCTTGTCCTCGATAGTCTCCATCCCTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CAA 72 bp | GGAAGCAATAGAGACTGCTGGACCAGGCCTGATACATaGTTCCACAAGCTGCCAATGCTCCGTGCTGACTTA | + |
|
Preference number: 4 (lower is better) Translates to: GSNRDCWTRPDT*FHKLPMLRADL Trigger: TAAGTCAGCACGGAGCATTGGCAGCTTGTGGAACAATGTATCAGGCCTGGTCCAGCAGTCTCTATTGCTTCC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| 3UTR CAA 72 bp | TCCCTCTGCCACGGTGCAGCACTGAAATCTGAGGTGTaGATGGTCACCATTTCCAGTTATTTTAACTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLCHGAALKSEV*MVTISSYFNCR Trigger: CCTGCAGTTAAAATAACTGGAAATGGTGACCATCAACACCTCAGATTTCAGTGCTGCACCGTGGCAGAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| CDS-3UTR GCA 90 bp | TATTCTCCTATGAAGGGCTGCCCTGAAAGGAAGGAAGCAATAGAGACTGCTGGAACTGGCAAACTGGACTaGATTAACCTCAGAACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: YSPMKGCPERKEAIETAGTGKLD*INLRTS Trigger: AGAAGTTCTGAGGTTAATGCAGTCCAGTTTGCCAGT...TCCAGCAGTCTCTATTGCTTCCTTCCTTTCAGGGCAGCCCTTCATAGGAGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
||
| 3UTR CAA 72 bp | TGGCTTGTTATTGTTTGTTTTGGAGGCAGACTAAGCTaGGTTGGAAAACACGGTGTCCTGCACCATTACCAA | + |
|
Preference number: 4 (lower is better) Translates to: WLVIVCFGGRLS*VGKHGVLHHYQ Trigger: TTGGTAATGGTGCAGGACACCGTGTTTTCCAACCAAGCTTAGTCTGCCTCCAAAACAAACAATAACAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
||
| CDS-3UTR GCA 90 bp | GCTGTGACTTCAGCTCTTTCTTCTTTCATCCTATGCACTTCCTATCAGTCATGCTGCCAATCAAAATCCTaGAGCTGCGCACAAGAAATA | + |
|
Preference number: 4 (lower is better) Translates to: AVTSALSSFILCTSYQSCCQSKS*SCAQEI Trigger: TATTTCTTGTGCGCAGCTGCAGGATTTTGATTGGCA...GCATGACTGATAGGAAGTGCATAGGATGAAAGAAGAAAGAGCTGAAGTCACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| CDS-3UTR CCA 90 bp | GCAACACAGGAAGAGACGACCAGCTTGTATTTGTTCAGAATGCTTATTTTCAGTAGTTGGTTCAGTTGCTaGAGTGTCTCTTCCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ATQEETTSLYLFRMLIFSSWFSC*SVSSSE Trigger: CTCTGAGGAAGAGACACTCCAGCAACTGAACCAACT...ACTGAAAATAAGCATTCTGAACAAATACAAGCTGGTCGTCTCTTCCTGTGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
||
| CDS-3UTR GCA 90 bp | TATGCACTTCCTATCAGTCATGCAATTTCCTGTCCCTTAGGGTTTCTGACGGATTCAAAATCCTGCAGCTaGGCACAAGAAATATCAACT | + |
|
Preference number: 4 (lower is better) Translates to: YALPISHAISCPLGFLTDSKSCS*AQEIST Trigger: AGTTGATATTTCTTGTGCGCAGCTGCAGGATTTTGA...ATCCGTCAGAAACCCTAAGGGACAGGAAATTGCATGACTGATAGGAAGTGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| 3UTR CAA 72 bp | GGTCATAAATCATGTGATAAAAATGGCACTTTGTCTTaGCAATCTTCTCTCCCAAAACCTGTAACTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: GHKSCDKNGTLS*QSSLPKPVTPV Trigger: AACTGGAGTTACAGGTTTTGGGAGAGAAGATTGCAAAGACAAAGTGCCATTTTTATCACATGATTTATGACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| 3UTR CAA 72 bp | GGAGATGCTTTCATGAGTATCTGTTGGTCAAATGTATaGAACCAACACTTTAAATATGGACATTATAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: GDAFMSICWSNV*NQHFKYGHYSV Trigger: CACACTATAATGTCCATATTTAAAGTGTTGGTTCAATACATTTGACCAACAGATACTCATGAAAGCATCTCC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| CDS-3UTR CAA 90 bp | ACTGCTATGTCGCAGCCCATAGAGCAGCCTTGTCTGAGGCTGCCTGCAGCCGTACCCAACAGGGCCTGCTaGATCTCATTTCTCCTACTC | + |
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Preference number: 5 (lower is better) Translates to: TAMSQPIEQPCLRLPAAVPNRAC*ISFLLL Trigger: GAGTAGGAGAAATGAGATCAAGCAGGCCCTGTTGGG...TACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS-3UTR CAA 90 bp | ACTGCTATGTCGCAGCCCATAGAGCAGCCTTGTCTGAGGCTGCCTGCAGCCGTATGCAAGGTGGCAATCTaGTCACTAGAAAGCGCGAGC | + |
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Preference number: 5 (lower is better) Translates to: TAMSQPIEQPCLRLPAAVCKVAI*SLESAS Trigger: GCTCGCGCTTTCTAGTGACAAGATTGCCACCTTGCA...TACGGCTGCAGGCAGCCTCAGACAAGGCTGCTCTATGGGCTGCGACATAGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS-3UTR CAA 90 bp | GTGACTGTTAGAAACACAATGAGGGGGCTGGAGAGCACTGACTGCTCTTCCAGAATTCAGTTGGTTCAGTaGCTGGAGTGTCTCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VTVRNTMRGLESTDCSSRIQLVQ*LECLFL Trigger: GAGGAAGAGACACTCCAGCAACTGAACCAACTGAAT...TCTGGAAGAGCAGTCAGTGCTCTCCAGCCCCCTCATTGTGTTTCTAACAGTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS TCA 90 bp | TTTGAAAAACGTGGTAACATCTTCGAGAACATGCTTCCACTCAGCTaGATTCCAGACACTGTGATAATCCTGGTGGGCAGGATAAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: FEKRGNIFENMLPLS*IPDTVIILVGRISS Trigger: CGAGCTTATCCTGCCCACCAGGATTATCACAGTGTCTGGAATTCAGCTGAGTGGAAGCATGTTCTCGAAGATGTTACCACGTTTTTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000199767.5 |
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| CDS-3UTR CAA 90 bp | GGAAGGTGGATCAGAATGCTAACAAACAAGCGGGAATGGAATATGAGTAATAGAGTGTACGGTTTCACTTaGTCATCTTCCTTCACATCC | + |
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Preference number: 5 (lower is better) Translates to: GRWIRMLTNKREWNMSNRVYGFT*SSSFTS Trigger: GGATGTGAAGGAAGATGACAAAGTGAAACCGTACAC...TCTATTACTCATATTCCATTCCCGCTTGTTTGTTAGCATTCTGATCCACCTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS CCA 72 bp | AGACAGCACTACCCGCCAAAAGAAAGACTGGCAAACTaGACTGCATTAACCTCAGAACTTCTGTTCCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: RQHYPPKERLAN*TALTSELLFPK Trigger: TTTGGGGAACAGAAGTTCTGAGGTTAATGCAGTCCAGTTTGCCAGTCTTTCTTTTGGCGGGTAGTGCTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| CDS CAA 90 bp | TTCAGTTGGTTCAGTTGCTGGAGTGTCTCTTCCTCAGAGAAGTTTTaGCCAACGACCGCTTTGAAAAACGTGGTAACATCTTCGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: FSWFSCWSVSSSEKF*PTTALKNVVTSSRT Trigger: TGTTCTCGAAGATGTTACCACGTTTTTCAAAGCGGTCGTTGGCAAAAACTTCTCTGAGGAAGAGACACTCCAGCAACTGAACCAACTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS CAA 72 bp | GTCTCTTCCTCAGAGAAGTTTTTGCCAACGACCGCTTaGAAAAACGTGGTAACATCTTCGAGAACATGCTTC | + |
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Preference number: 6 (lower is better) Translates to: VSSSEKFLPTTA*KNVVTSSRTCF Trigger: GAAGCATGTTCTCGAAGATGTTACCACGTTTTTCAAAGCGGTCGTTGGCAAAAACTTCTCTGAGGAAGAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS CAA 72 bp | TTCAGTTGCTGGAGTGTCTCTTCCTCAGAGAAGTTTTaGCCAACGACCGCTTTGAAAAACGTGGTAACATCT | + |
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Preference number: 6 (lower is better) Translates to: FSCWSVSSSEKF*PTTALKNVVTS Trigger: AGATGTTACCACGTTTTTCAAAGCGGTCGTTGGCAAAAACTTCTCTGAGGAAGAGACACTCCAGCAACTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013693.11 |
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| CDS CAA 72 bp | TCCTCTTCCTCAGAGAAGTTTTTGCCAACGACCGCTTaGAAAAACGTGGTAACATCTTCGAGAACATGCTTC | + |
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Preference number: 6 (lower is better) Translates to: SSSSEKFLPTTA*KNVVTSSRTCF Trigger: GAAGCATGTTCTCGAAGATGTTACCACGTTTTTCAAAGCGGTCGTTGGCAAAAACTTCTCTGAGGAAGAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000199767.5 |
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| CDS GCA 72 bp | GCACAAGAAATATCAACTATTTCCCCCAACAGGGCCTaGTTGATCTCATTTCTCCTACTCTTTAAACATTTC | + |
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Preference number: 6 (lower is better) Translates to: AQEISTISPNRA*LISFLLLFKHF Trigger: GAAATGTTTAAAGAGTAGGAGAAATGAGATCAAGCAGGCCCTGTTGGGGGAAATAGTTGATATTTCTTGTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013693.11 ENSMUST00000196241.2 |
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