RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COMMD7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056941

Ensembl transcript IDs: ENSMUST00000071852.10, ENSMUST00000109782.2

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTAAAGTCACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCACTCCTCAAGCGCTGAGACTCTTGGT +
Preference number: 1 (lower is better)
Translates to: CKVTQEPEVVAPSGA*RRIRQHSSSAETLG
Trigger: ACCAAGAGTCTCAGCGCTTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 90 bp CTCTCGGAGCATCTAGGTGTAAAGTCACCCAGGAGCCGGAGGTGGTaGCTCCCAGTGGGGCTTGCAGAAGAATCAGGCAGCACTCCTCAA +
Preference number: 1 (lower is better)
Translates to: LSEHLGVKSPRSRRW*LPVGLAEESGSTPQ
Trigger: TTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACACCTAGATGCTCCGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 90 bp GAGCAGGAAGCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATaGCTGGCTTGGTTTGAGACAGGCTCTCACTTTGCTGCTCTGGCT +
Preference number: 1 (lower is better)
Translates to: EQEALLTTEPSVSPP*LAWFETGSHFAALA
Trigger: AGCCAGAGCAGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGCTTCCTGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 90 bp GTGTGCACGGGTGTGTACAGGTTAGACTACACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGGATCCTGGGAGTTGAACTCGGGCAT +
Preference number: 1 (lower is better)
Translates to: VCTGVYRLDYTCGDQ*SPSTKWILGVELGH
Trigger: ATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCTGTACACACCCGTGCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 90 bp GCTATGCCACACCCTGTGGCCTTTTATGAGCCACCATGTGGTTGCTaGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: AMPHPVAFYEPPCGC*DLNSGPSEEQSGAL
Trigger: AAGAGCACCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTGTGGCATAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 90 bp AGGTTAGACTACACCTGTGGGGATCAGTGGTCTCCTTCCACCAAGTaGATCCTGGGAGTTGAACTCGGGCATCGGGGTAGGTGTATTTAC +
Preference number: 1 (lower is better)
Translates to: RLDYTCGDQWSPSTK*ILGVELGHRGRCIY
Trigger: GTAAATACACCTACCCCGATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 90 bp GTACCCAACCATCTGAATGAAGGAACTGAGCCGTTTGTGAACTGTTaGATGGGAGGTGACAAGACTGCCTCCCAGAGAAAGGACACAGTC +
Preference number: 1 (lower is better)
Translates to: VPNHLNEGTEPFVNC*MGGDKTASQRKDTV
Trigger: GACTGTGTCCTTTCTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAGTTCACAAACGGCTCAGTTCCTTCATTCAGATGGTTGGGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR TCA 90 bp CGCAGGGCCAAGGTTGTAGGTATATGCCGCTACACCCAGGTCGGCTaGCTCTTAAACCATGGAGAAAGACATTTTGTGGATTCAGAGCTT +
Preference number: 1 (lower is better)
Translates to: RRAKVVGICRYTQVG*LLNHGERHFVDSEL
Trigger: AAGCTCTGAATCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAGCCGACCTGGGTGTAGCGGCATATACCTACAACCTTGGCCCTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR GCA 90 bp GTTGGTTTTCTGGAACCAAACAATGTAAGATGGCCTCGAAAGGCCTaGCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGAAATCG +
Preference number: 1 (lower is better)
Translates to: VGFLEPNNVRWPRKA*LLITQKPKRQTQKS
Trigger: CGATTTCTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCGGTGGTGGCTCCCAGTaGGGCTTGCAGAAGAATCAG +
Preference number: 2 (lower is better)
Translates to: TRVTPLLTHCPHHPPFLSGGGSQ*GLQKNQ
Trigger: CTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACC...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp GTGAACTGTTGGATGGGAGGTGACAAGACTGCCTCCCAGAGAAAGGACACAGTCCCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTT +
Preference number: 2 (lower is better)
Translates to: VNCWMGGDKTASQRKDTVPRSRR*WLPVGL
Trigger: AAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGG...GACTGTGTCCTTTCTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAGTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR TCA 90 bp ACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAAACAGTGTGACACTGTTGGATGGGAGGTaGCAAGACTGCCTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: TTRQTVAGNALPPPNSVTLLDGR*QDCLPE
Trigger: CTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAG...TGTCACACTGTTTGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp GCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAGGTGGTGGCTCCCAGTaGGGCTTGCAGAAGAATCAG +
Preference number: 2 (lower is better)
Translates to: AFTQTTRQTVAGNALPPPGGGSQ*GLQKNQ
Trigger: CTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACC...TGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCCCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTT +
Preference number: 2 (lower is better)
Translates to: LYQTSRKLVRSITGGSKGPRSRR*WLPVGL
Trigger: AAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGG...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR GCA 90 bp CAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACACAGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: QCPSPSKQCDTCDTTPDTAPSGA*RRIRQH
Trigger: GTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGC...TGTGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCAGGCAGCTGGGAGCCTaGAGTAGGCTGACACTAGGG +
Preference number: 2 (lower is better)
Translates to: LYQTSRKLVRSITGGSKGRQLGA*SRLTLG
Trigger: CCCTAGTGTCAGCCTACTCCAGGCTCCCAGCTGCCT...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CCA 90 bp TGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGCGACTCGGCAGACAGTaGCTGGCAATGCCCTTCCCC +
Preference number: 2 (lower is better)
Translates to: WPRKACLLITQKPKRQTQRLGRQ*LAMPFP
Trigger: GGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCG...CTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR GCA 90 bp GATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTGATAAAGAGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: DQSLGEAKAEAALAFDKEAPSGA*RRIRQH
Trigger: GTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGC...CTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CCA 90 bp GATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTGATAAAGAGACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGG +
Preference number: 2 (lower is better)
Translates to: DQSLGEAKAEAALAFDKETCGDQ*SPSTKW
Trigger: CCACTTGGTGGAAGGAGACCACTGATCCCCACAGGT...CTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR TCA 90 bp AATGTAAGATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACTGTTGGATGGGAGGTaGCAAGACTGCCTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: NVRWPRKACLLITQKPKRLLDGR*QDCLPE
Trigger: CTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAG...TCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR TCA 90 bp CATGTGTATGCCTGCTCTTGGATAAGAAGATGTGAGGTTGGAGTTACAGGCTGTGAACTGAGCCGTTTGTaGACTGTTGGATGGGAGGTG +
Preference number: 2 (lower is better)
Translates to: HVYACSWIRRCEVGVTGCELSRL*TVGWEV
Trigger: CACCTCCCATCCAACAGTTCACAAACGGCTCAGTTC...ACAGCCTGTAACTCCAACCTCACATCTTCTTATCCAAGAGCAGGCATACACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR TCA 90 bp ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGAACTGAGCCGTTTGTaGACTGTTGGATGGGAGGTG +
Preference number: 2 (lower is better)
Translates to: MASKGLPPYNTKAKETNTELSRL*TVGWEV
Trigger: CACCTCCCATCCAACAGTTCACAAACGGCTCAGTTC...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR-3UTR CCA 90 bp AAACAACAAGTTACCATTCTCTTTTTGGTGAAAGCCCCTAGTTCTCTTATGAGATCGGCAGACAGTGGCTaGCAATGCCCTTCCCCCTCC +
Preference number: 2 (lower is better)
Translates to: KQQVTILFLVKAPSSLMRSADSG*QCPSPS
Trigger: GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGA...TCTCATAAGAGAACTAGGGGCTTTCACCAAAAAGAGAATGGTAACTTGTTGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CCA 90 bp TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCAAACAAGGTGCAGGTTaGTGTTTATACACGCTGCTG +
Preference number: 2 (lower is better)
Translates to: LYQTSRKLVRSITGGSKGKQGAG*CLYTLL
Trigger: CAGCAGCGTGTATAAACACCAACCTGCACCTTGTTT...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR GCA 90 bp TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCCAAGCCATCCAGAAATaGCTTAACTACATTCTTTTT +
Preference number: 2 (lower is better)
Translates to: LYQTSRKLVRSITGGSKGQAIQK*LNYILF
Trigger: AAAAAGAATGTAGTTAAGGCATTTCTGGATGGCTTG...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CCA 90 bp CATGTGTATGCCTGCTCTTGGATAAGAAGATGTGAGGTTGGAGTTACAGGCTGTCTGACTCTTAAACCATaGAGAAAGACATTTTGTGGA +
Preference number: 2 (lower is better)
Translates to: HVYACSWIRRCEVGVTGCLTLKP*RKTFCG
Trigger: TCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAG...ACAGCCTGTAACTCCAACCTCACATCTTCTTATCCAAGAGCAGGCATACACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR TCA 90 bp AGATTAGCTATGGTCCAAAGAGAGAATTTTAACGGAATATTTAAGCAATCAGGCAGTTACAGGCTGTTGTaGGCTTCCAGAAGTGGATGC +
Preference number: 2 (lower is better)
Translates to: RLAMVQRENFNGIFKQSGSYRLL*ASRSGC
Trigger: GCATCCACTTCTGGAAGCTCACAACAGCCTGTAACT...GCCTGATTGCTTAAATATTCCGTTAAAATTCTCTCTTTGGACCATAGCTAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR GCA 90 bp AAACAACAAGTTACCATTCTCTTTTTGGTGAAAGCCCCTAGTTCTCTTATGAGACTCATGGCATGTGTATaGCTGCTCTTGGATAAGAAG +
Preference number: 2 (lower is better)
Translates to: KQQVTILFLVKAPSSLMRLMACV*LLLDKK
Trigger: CTTCTTATCCAAGAGCAGGCATACACATGCCATGAG...TCTCATAAGAGAACTAGGGGCTTTCACCAAAAAGAGAATGGTAACTTGTTGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CCA 90 bp AATCTTCAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTTGTATCAAACCGTGTATGCCTGCTCTTaGATAAGAAGATGTGAGGTT +
Preference number: 2 (lower is better)
Translates to: NLQISEHPGCYKKTLYQTVYACS*IRRCEV
Trigger: AACCTCACATCTTCTTATCCAAGAGCAGGCATACAC...GGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTGAAGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR GCA 72 bp ACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCACTCCTCAAGCGCTGAG +
Preference number: 3 (lower is better)
Translates to: TQEPEVVAPSGA*RRIRQHSSSAE
Trigger: CTCAGCGCTTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 72 bp GAGCATCTAGGTGTAAAGTCACCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTTGCAGAAGAATCAGGC +
Preference number: 3 (lower is better)
Translates to: EHLGVKSPRSRR*WLPVGLAEESG
Trigger: GCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACACCTAGATGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 72 bp ACCACAGAGCCGTCAGTCTCGCCCCCATGGCTGGCTTaGTTTGAGACAGGCTCTCACTTTGCTGCTCTGGCT +
Preference number: 3 (lower is better)
Translates to: TTEPSVSPPWLA*FETGSHFAALA
Trigger: AGCCAGAGCAGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp TACACCTGTGGGGATCAGTGGTCTCCTTCCACCAAGTaGATCCTGGGAGTTGAACTCGGGCATCGGGGTAGG +
Preference number: 3 (lower is better)
Translates to: YTCGDQWSPSTK*ILGVELGHRGR
Trigger: CCTACCCCGATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp GCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATaGCTGGCTTGGTTTGAGACAGGCTCTCACTTTGCT +
Preference number: 3 (lower is better)
Translates to: ALLTTEPSVSPP*LAWFETGSHFA
Trigger: AGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp CTCACGTCTACTCAGACCTATCCTGCTGCGGACGGCTaGATGGAAGGAAGAGTGCACATCCTGAAGGTTGTC +
Preference number: 3 (lower is better)
Translates to: LTSTQTYPAADG*MEGRVHILKVV
Trigger: GACAACCTTCAGGATGTGCACTCTTCCTTCCATCCAGCCGTCCGCAGCAGGATAGGTCTGAGTAGACGTGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CAA 90 bp ACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCCACAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGT +
Preference number: 3 (lower is better)
Translates to: TCDTTPDTLSTPPALPQPQALRL*VLEALC
Trigger: ACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTG...TGGCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR GCA 72 bp CCACACCCTGTGGCCTTTTATGAGCCACCATGTGGTTaGTGGGATTTGAACTCGGGACCTTCAGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: PHPVAFYEPPCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp CACCCTGTGGCCTTTTATGAGCCACCATGTGGTTGCTaGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: HPVAFYEPPCGC*DLNSGPSEEQS
Trigger: CGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp GGTGTGTACAGGTTAGACTACACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGGATCCTGGGAGTTGAA +
Preference number: 3 (lower is better)
Translates to: GVYRLDYTCGDQ*SPSTKWILGVE
Trigger: TTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCTGTACACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp GTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTaGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTG +
Preference number: 3 (lower is better)
Translates to: VSNQQETGPINH*GKQRLRRLLLL
Trigger: CAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CCA 72 bp GTTACAAAAAGACCTTGTATCAAACCAGCAGGAAACTaGTCCGATCAATCACTGGGGGAAGCAAAGGCTGAG +
Preference number: 3 (lower is better)
Translates to: VTKRPCIKPAGN*SDQSLGEAKAE
Trigger: CTCAGCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAAGGTCTTTTTGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR-3UTR CAA 90 bp ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACACAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGT +
Preference number: 3 (lower is better)
Translates to: MASKGLPPYNTKAKETNTQALRL*VLEALC
Trigger: ACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTG...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR TCA 72 bp AAGGTTGTAGGTATATGCCGCTACACCCAGGTCGGCTaGCTCTTAAACCATGGAGAAAGACATTTTGTGGAT +
Preference number: 3 (lower is better)
Translates to: KVVGICRYTQVG*LLNHGERHFVD
Trigger: ATCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAGCCGACCTGGGTGTAGCGGCATATACCTACAACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR GCA 72 bp CTGGAACCAAACAATGTAAGATGGCCTCGAAAGGCCTaGCTCCTTATAACACAAAAGCCAAAGAGACAAACA +
Preference number: 3 (lower is better)
Translates to: LEPNNVRWPRKA*LLITQKPKRQT
Trigger: TGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 72 bp AAGGTGGTTGGTTTTCTGGAACCAAACAATGTAAGATaGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAG +
Preference number: 3 (lower is better)
Translates to: KVVGFLEPNNVR*PRKACLLITQK
Trigger: CTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAACCACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CCA 72 bp ATTATCTTTAATTATGAGCATTTGCGCAGGTATCCATaGAGGCCAGAGGCATTAAATTCCCTGAAGCTGGAC +
Preference number: 3 (lower is better)
Translates to: IIFNYEHLRRYP*RPEALNSLKLD
Trigger: GTCCAGCTTCAGGGAATTTAATGCCTCTGGCCTCCATGGATACCTGCGCAAATGCTCATAATTAAAGATAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR GCA 90 bp ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCAGCTGGTTCAGCTGCTaGATGTCTCCGCGCACGGCC +
Preference number: 4 (lower is better)
Translates to: TRVTPLLTHCPHHPPFLSSWFSC*MSPRTA
Trigger: GGCCGTGCGCGGAGACATGCAGCAGCTGAACCAGCT...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR TCA 90 bp ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCGCAAATTCAGAGAGCTaGGCCAGAAATCGCTCCACC +
Preference number: 4 (lower is better)
Translates to: TRVTPLLTHCPHHPPFLSANSES*ARNRST
Trigger: GGTGGAGCGATTTCTGGCTCAGCTCTCTGAATTTGC...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR GCA 90 bp ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACATCGGGCACCGGGTCCTaGGTGCAGTGCAGGCGGCCC +
Preference number: 4 (lower is better)
Translates to: MASKGLPPYNTKAKETNTSGTGS*VQCRRP
Trigger: GGGCCGCCTGCACTGCACGCAGGACCCGGTGCCCGA...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR TCA 90 bp CAAAGAGCAGGAAGCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATGGCTTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCA +
Preference number: 4 (lower is better)
Translates to: QRAGSTLNHRAVSLAPMALTIRV*PMAHCA
Trigger: TGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAA...AGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGCTTCCTGCTCTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR CCA 90 bp ACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCCAATCGCTCCACCTCTTTaGGCTCAGTTAGGAAATGGA +
Preference number: 4 (lower is better)
Translates to: TCDTTPDTLSTPPALPQPIAPPL*AQLGNG
Trigger: TCCATTTCCTAACTGAGCCCAAAGAGGTGGAGCGAT...TGGCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR GCA 90 bp ACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAAACAGTAGGGTCGAGGCGTTCTaGTTCCACTTTTCAGAAAAG +
Preference number: 4 (lower is better)
Translates to: TQTTRQTVAGNALPPPNSRVEAF*FHFSEK
Trigger: CTTTTCTGAAAAGTGGAAGCAGAACGCCTCGACCCT...ACTGTTTGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS-3UTR GCA 90 bp GGCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCCTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: GFYTDDSADSGWQCPSPSLSLIH*SQTSLQ
Trigger: TTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAG...GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CAA 72 bp GTGGCCTTTTATGAGCCACCATGTGGTTGCTGGGATTaGAACTCGGGACCTTCAGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: VAFYEPPCGCWD*NSGPSEEQSGA
Trigger: AGCACCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR GCA 90 bp GGCAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACAAGGGTCGAGGCGTTCTaGTTCCACTTTTCAGAAAAG +
Preference number: 4 (lower is better)
Translates to: GNALPPPNSVTRVTPLLTRVEAF*FHFSEK
Trigger: CTTTTCTGAAAAGTGGAAGCAGAACGCCTCGACCCT...TGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CAA 72 bp GAAGAATCAGGCAGCACTCCTCAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGTCCGCGGCCTCTCAAG +
Preference number: 4 (lower is better)
Translates to: EESGSTPQALRL*VLEALCPRPLK
Trigger: CTTGAGAGGCCGCGGACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTGAGGAGTGCTGCCTGATTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS-3UTR TCA 90 bp TGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCA +
Preference number: 4 (lower is better)
Translates to: WPRKACLLITQKPKRQTQLTIRV*PMAHCA
Trigger: TGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAA...CTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS-3UTR GCA 90 bp CTTAACCAAAAGGTGGTTGGTTTTCTGGAACCAAACAATGTAAGATGGCCTCGACCCAGCTGGTTCAGCTaGTGCATGTCTCCGCGCACG +
Preference number: 4 (lower is better)
Translates to: LNQKVVGFLEPNNVRWPRPSWFS*CMSPRT
Trigger: CGTGCGCGGAGACATGCAGCAGCTGAACCAGCTGGG...TCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAACCACCTTTTGGTTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR GCA 90 bp CAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACACACTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: QCPSPSKQCDTCDTTPDTLSLIH*SQTSLQ
Trigger: TTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAG...TGTGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
3UTR CAA 72 bp TGGATGGAAGGAAGAGTGCACATCCTGAAGGTTGTCTaGAATCCACAAGGCCCTAAACATGACTCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: WMEGRVHILKVV*NPQGPKHDSAN
Trigger: GTTGGCTGAGTCATGTTTAGGGCCTTGTGGATTCAAGACAACCTTCAGGATGTGCACTCTTCCTTCCATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CAA 72 bp ATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTaGCTTTTGATAAAGAGAGATCTCCATGTGAACTGG +
Preference number: 4 (lower is better)
Translates to: INHWGKQRLRRL*LLIKRDLHVNW
Trigger: CCAGTTCACATGGAGATCTCTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
3UTR CAA 72 bp CAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTaGTATCAAACCAGCAGGAAACTGGTCCGATCAATC +
Preference number: 4 (lower is better)
Translates to: QISEHPGCYKKT*YQTSRKLVRSI
Trigger: GATTGATCGGACCAGTTTCCTGCTGGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR TCA 90 bp AATCTTCAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTTGTATCAAACCGGGCCAAGACTGATCTaGTTGCTGGTGGCAAATTCA +
Preference number: 4 (lower is better)
Translates to: NLQISEHPGCYKKTLYQTGPRLI*LLVANS
Trigger: TGAATTTGCCACCAGCAATCAGATCAGTCTTGGCCC...GGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTGAAGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS-3UTR CAA 90 bp AAGTCACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTGCAGAAGAATCAAATCGCTCCACCTCTTaGGGCTCAGTTAGGAAATGG +
Preference number: 5 (lower is better)
Translates to: KSPRSRRWWLPVGLAEESNRSTS*GSVRKW
Trigger: CCATTTCCTAACTGAGCCCAAAGAGGTGGAGCGATT...TGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS TCA 90 bp CCAAACCTCCACTCCATATCAATCAGCTGGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCAAGGGTCGAGGCGTTCTGCTTCCAC +
Preference number: 5 (lower is better)
Translates to: PNLHSISISWLTIRV*PMAHCARVEAFCFH
Trigger: GTGGAAGCAGAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTGGAGGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS-3UTR CAA 90 bp GGCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCCTTTTCATGATGCTTTaGAGGGGGCCAAGACTGATC +
Preference number: 5 (lower is better)
Translates to: GFYTDDSADSGWQCPSPSLFMML*RGPRLI
Trigger: GATCAGTCTTGGCCCCCTCAAAAGCATCATGAAAAG...GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000071852.10
CDS GCA 90 bp CCAACTTTAACTGTAAAAATATGCTTCCCACTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAAACCTCCACTCCATATCAATCAGCT +
Preference number: 5 (lower is better)
Translates to: PTLTVKICFPLSLIH*SQTSLQTSTPYQSA
Trigger: AGCTGATTGATATGGAGTGGAGGTTTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAGTGGGAAGCATATTTTTACAGTTAAAGTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS TCA 72 bp CACTCCATATCAATCAGCTGGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCAAGGGTCGAGGCGTTC +
Preference number: 6 (lower is better)
Translates to: HSISISWLTIRV*PMAHCARVEAF
Trigger: GAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2
CDS GCA 72 bp CTGGTTAACCATCAGGGTCTGACCCATGGCCCACTGTaGAAGGGTCGAGGCGTTCTGCTTCCACTTTTCAGA +
Preference number: 6 (lower is better)
Translates to: LVNHQGLTHGPL*KGRGVLLPLFR
Trigger: TCTGAAAAGTGGAAGCAGAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071852.10
ENSMUST00000109782.2