Pregenerated sensors for COMMD7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056941Ensembl transcript IDs: ENSMUST00000071852.10, ENSMUST00000109782.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TGTAAAGTCACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCACTCCTCAAGCGCTGAGACTCTTGGT | + |
Preference number: 1 (lower is better) Translates to: CKVTQEPEVVAPSGA*RRIRQHSSSAETLG Trigger: ACCAAGAGTCTCAGCGCTTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 90 bp | CTCTCGGAGCATCTAGGTGTAAAGTCACCCAGGAGCCGGAGGTGGTaGCTCCCAGTGGGGCTTGCAGAAGAATCAGGCAGCACTCCTCAA | + |
Preference number: 1 (lower is better) Translates to: LSEHLGVKSPRSRRW*LPVGLAEESGSTPQ Trigger: TTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACACCTAGATGCTCCGAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 90 bp | GAGCAGGAAGCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATaGCTGGCTTGGTTTGAGACAGGCTCTCACTTTGCTGCTCTGGCT | + |
Preference number: 1 (lower is better) Translates to: EQEALLTTEPSVSPP*LAWFETGSHFAALA Trigger: AGCCAGAGCAGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGCTTCCTGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 90 bp | GTGTGCACGGGTGTGTACAGGTTAGACTACACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGGATCCTGGGAGTTGAACTCGGGCAT | + |
Preference number: 1 (lower is better) Translates to: VCTGVYRLDYTCGDQ*SPSTKWILGVELGH Trigger: ATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCTGTACACACCCGTGCACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 90 bp | GCTATGCCACACCCTGTGGCCTTTTATGAGCCACCATGTGGTTGCTaGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCGGGTGCTCTT | + |
Preference number: 1 (lower is better) Translates to: AMPHPVAFYEPPCGC*DLNSGPSEEQSGAL Trigger: AAGAGCACCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTGTGGCATAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 90 bp | AGGTTAGACTACACCTGTGGGGATCAGTGGTCTCCTTCCACCAAGTaGATCCTGGGAGTTGAACTCGGGCATCGGGGTAGGTGTATTTAC | + |
Preference number: 1 (lower is better) Translates to: RLDYTCGDQWSPSTK*ILGVELGHRGRCIY Trigger: GTAAATACACCTACCCCGATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 90 bp | GTACCCAACCATCTGAATGAAGGAACTGAGCCGTTTGTGAACTGTTaGATGGGAGGTGACAAGACTGCCTCCCAGAGAAAGGACACAGTC | + |
Preference number: 1 (lower is better) Translates to: VPNHLNEGTEPFVNC*MGGDKTASQRKDTV Trigger: GACTGTGTCCTTTCTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAGTTCACAAACGGCTCAGTTCCTTCATTCAGATGGTTGGGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR TCA 90 bp | CGCAGGGCCAAGGTTGTAGGTATATGCCGCTACACCCAGGTCGGCTaGCTCTTAAACCATGGAGAAAGACATTTTGTGGATTCAGAGCTT | + |
Preference number: 1 (lower is better) Translates to: RRAKVVGICRYTQVG*LLNHGERHFVDSEL Trigger: AAGCTCTGAATCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAGCCGACCTGGGTGTAGCGGCATATACCTACAACCTTGGCCCTGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR GCA 90 bp | GTTGGTTTTCTGGAACCAAACAATGTAAGATGGCCTCGAAAGGCCTaGCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGAAATCG | + |
Preference number: 1 (lower is better) Translates to: VGFLEPNNVRWPRKA*LLITQKPKRQTQKS Trigger: CGATTTCTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCGGTGGTGGCTCCCAGTaGGGCTTGCAGAAGAATCAG | + |
Preference number: 2 (lower is better) Translates to: TRVTPLLTHCPHHPPFLSGGGSQ*GLQKNQ Trigger: CTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACC...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | GTGAACTGTTGGATGGGAGGTGACAAGACTGCCTCCCAGAGAAAGGACACAGTCCCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTT | + |
Preference number: 2 (lower is better) Translates to: VNCWMGGDKTASQRKDTVPRSRR*WLPVGL Trigger: AAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGG...GACTGTGTCCTTTCTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAGTTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR TCA 90 bp | ACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAAACAGTGTGACACTGTTGGATGGGAGGTaGCAAGACTGCCTCCCAGAG | + |
Preference number: 2 (lower is better) Translates to: TTRQTVAGNALPPPNSVTLLDGR*QDCLPE Trigger: CTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAG...TGTCACACTGTTTGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | GCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAGGTGGTGGCTCCCAGTaGGGCTTGCAGAAGAATCAG | + |
Preference number: 2 (lower is better) Translates to: AFTQTTRQTVAGNALPPPGGGSQ*GLQKNQ Trigger: CTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACC...TGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCCCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTT | + |
Preference number: 2 (lower is better) Translates to: LYQTSRKLVRSITGGSKGPRSRR*WLPVGL Trigger: AAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGG...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR GCA 90 bp | CAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACACAGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCAC | + |
Preference number: 2 (lower is better) Translates to: QCPSPSKQCDTCDTTPDTAPSGA*RRIRQH Trigger: GTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGC...TGTGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCAGGCAGCTGGGAGCCTaGAGTAGGCTGACACTAGGG | + |
Preference number: 2 (lower is better) Translates to: LYQTSRKLVRSITGGSKGRQLGA*SRLTLG Trigger: CCCTAGTGTCAGCCTACTCCAGGCTCCCAGCTGCCT...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CCA 90 bp | TGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGCGACTCGGCAGACAGTaGCTGGCAATGCCCTTCCCC | + |
Preference number: 2 (lower is better) Translates to: WPRKACLLITQKPKRQTQRLGRQ*LAMPFP Trigger: GGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCG...CTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR GCA 90 bp | GATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTGATAAAGAGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCAC | + |
Preference number: 2 (lower is better) Translates to: DQSLGEAKAEAALAFDKEAPSGA*RRIRQH Trigger: GTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGC...CTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CCA 90 bp | GATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTGATAAAGAGACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGG | + |
Preference number: 2 (lower is better) Translates to: DQSLGEAKAEAALAFDKETCGDQ*SPSTKW Trigger: CCACTTGGTGGAAGGAGACCACTGATCCCCACAGGT...CTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR TCA 90 bp | AATGTAAGATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACTGTTGGATGGGAGGTaGCAAGACTGCCTCCCAGAG | + |
Preference number: 2 (lower is better) Translates to: NVRWPRKACLLITQKPKRLLDGR*QDCLPE Trigger: CTCTGGGAGGCAGTCTTGTCACCTCCCATCCAACAG...TCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR TCA 90 bp | CATGTGTATGCCTGCTCTTGGATAAGAAGATGTGAGGTTGGAGTTACAGGCTGTGAACTGAGCCGTTTGTaGACTGTTGGATGGGAGGTG | + |
Preference number: 2 (lower is better) Translates to: HVYACSWIRRCEVGVTGCELSRL*TVGWEV Trigger: CACCTCCCATCCAACAGTTCACAAACGGCTCAGTTC...ACAGCCTGTAACTCCAACCTCACATCTTCTTATCCAAGAGCAGGCATACACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR TCA 90 bp | ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGAACTGAGCCGTTTGTaGACTGTTGGATGGGAGGTG | + |
Preference number: 2 (lower is better) Translates to: MASKGLPPYNTKAKETNTELSRL*TVGWEV Trigger: CACCTCCCATCCAACAGTTCACAAACGGCTCAGTTC...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR-3UTR CCA 90 bp | AAACAACAAGTTACCATTCTCTTTTTGGTGAAAGCCCCTAGTTCTCTTATGAGATCGGCAGACAGTGGCTaGCAATGCCCTTCCCCCTCC | + |
Preference number: 2 (lower is better) Translates to: KQQVTILFLVKAPSSLMRSADSG*QCPSPS Trigger: GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGA...TCTCATAAGAGAACTAGGGGCTTTCACCAAAAAGAGAATGGTAACTTGTTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CCA 90 bp | TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCAAACAAGGTGCAGGTTaGTGTTTATACACGCTGCTG | + |
Preference number: 2 (lower is better) Translates to: LYQTSRKLVRSITGGSKGKQGAG*CLYTLL Trigger: CAGCAGCGTGTATAAACACCAACCTGCACCTTGTTT...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR GCA 90 bp | TTGTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTGGGGGAAGCAAAGGCCAAGCCATCCAGAAATaGCTTAACTACATTCTTTTT | + |
Preference number: 2 (lower is better) Translates to: LYQTSRKLVRSITGGSKGQAIQK*LNYILF Trigger: AAAAAGAATGTAGTTAAGGCATTTCTGGATGGCTTG...GCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CCA 90 bp | CATGTGTATGCCTGCTCTTGGATAAGAAGATGTGAGGTTGGAGTTACAGGCTGTCTGACTCTTAAACCATaGAGAAAGACATTTTGTGGA | + |
Preference number: 2 (lower is better) Translates to: HVYACSWIRRCEVGVTGCLTLKP*RKTFCG Trigger: TCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAG...ACAGCCTGTAACTCCAACCTCACATCTTCTTATCCAAGAGCAGGCATACACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR TCA 90 bp | AGATTAGCTATGGTCCAAAGAGAGAATTTTAACGGAATATTTAAGCAATCAGGCAGTTACAGGCTGTTGTaGGCTTCCAGAAGTGGATGC | + |
Preference number: 2 (lower is better) Translates to: RLAMVQRENFNGIFKQSGSYRLL*ASRSGC Trigger: GCATCCACTTCTGGAAGCTCACAACAGCCTGTAACT...GCCTGATTGCTTAAATATTCCGTTAAAATTCTCTCTTTGGACCATAGCTAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR GCA 90 bp | AAACAACAAGTTACCATTCTCTTTTTGGTGAAAGCCCCTAGTTCTCTTATGAGACTCATGGCATGTGTATaGCTGCTCTTGGATAAGAAG | + |
Preference number: 2 (lower is better) Translates to: KQQVTILFLVKAPSSLMRLMACV*LLLDKK Trigger: CTTCTTATCCAAGAGCAGGCATACACATGCCATGAG...TCTCATAAGAGAACTAGGGGCTTTCACCAAAAAGAGAATGGTAACTTGTTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CCA 90 bp | AATCTTCAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTTGTATCAAACCGTGTATGCCTGCTCTTaGATAAGAAGATGTGAGGTT | + |
Preference number: 2 (lower is better) Translates to: NLQISEHPGCYKKTLYQTVYACS*IRRCEV Trigger: AACCTCACATCTTCTTATCCAAGAGCAGGCATACAC...GGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTGAAGATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR GCA 72 bp | ACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTaGAGAAGAATCAGGCAGCACTCCTCAAGCGCTGAG | + |
Preference number: 3 (lower is better) Translates to: TQEPEVVAPSGA*RRIRQHSSSAE Trigger: CTCAGCGCTTGAGGAGTGCTGCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 72 bp | GAGCATCTAGGTGTAAAGTCACCCAGGAGCCGGAGGTaGTGGCTCCCAGTGGGGCTTGCAGAAGAATCAGGC | + |
Preference number: 3 (lower is better) Translates to: EHLGVKSPRSRR*WLPVGLAEESG Trigger: GCCTGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTTTACACCTAGATGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 72 bp | ACCACAGAGCCGTCAGTCTCGCCCCCATGGCTGGCTTaGTTTGAGACAGGCTCTCACTTTGCTGCTCTGGCT | + |
Preference number: 3 (lower is better) Translates to: TTEPSVSPPWLA*FETGSHFAALA Trigger: AGCCAGAGCAGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | TACACCTGTGGGGATCAGTGGTCTCCTTCCACCAAGTaGATCCTGGGAGTTGAACTCGGGCATCGGGGTAGG | + |
Preference number: 3 (lower is better) Translates to: YTCGDQWSPSTK*ILGVELGHRGR Trigger: CCTACCCCGATGCCCGAGTTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | GCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATaGCTGGCTTGGTTTGAGACAGGCTCTCACTTTGCT | + |
Preference number: 3 (lower is better) Translates to: ALLTTEPSVSPP*LAWFETGSHFA Trigger: AGCAAAGTGAGAGCCTGTCTCAAACCAAGCCAGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | CTCACGTCTACTCAGACCTATCCTGCTGCGGACGGCTaGATGGAAGGAAGAGTGCACATCCTGAAGGTTGTC | + |
Preference number: 3 (lower is better) Translates to: LTSTQTYPAADG*MEGRVHILKVV Trigger: GACAACCTTCAGGATGTGCACTCTTCCTTCCATCCAGCCGTCCGCAGCAGGATAGGTCTGAGTAGACGTGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CAA 90 bp | ACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCCACAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGT | + |
Preference number: 3 (lower is better) Translates to: TCDTTPDTLSTPPALPQPQALRL*VLEALC Trigger: ACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTG...TGGCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR GCA 72 bp | CCACACCCTGTGGCCTTTTATGAGCCACCATGTGGTTaGTGGGATTTGAACTCGGGACCTTCAGAAGAGCAG | + |
Preference number: 3 (lower is better) Translates to: PHPVAFYEPPCG*WDLNSGPSEEQ Trigger: CTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | CACCCTGTGGCCTTTTATGAGCCACCATGTGGTTGCTaGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCG | + |
Preference number: 3 (lower is better) Translates to: HPVAFYEPPCGC*DLNSGPSEEQS Trigger: CGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCACAGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | GGTGTGTACAGGTTAGACTACACCTGTGGGGATCAGTaGTCTCCTTCCACCAAGTGGATCCTGGGAGTTGAA | + |
Preference number: 3 (lower is better) Translates to: GVYRLDYTCGDQ*SPSTKWILGVE Trigger: TTCAACTCCCAGGATCCACTTGGTGGAAGGAGACCACTGATCCCCACAGGTGTAGTCTAACCTGTACACACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | GTATCAAACCAGCAGGAAACTGGTCCGATCAATCACTaGGGGAAGCAAAGGCTGAGGCGGCTCTTGCTTTTG | + |
Preference number: 3 (lower is better) Translates to: VSNQQETGPINH*GKQRLRRLLLL Trigger: CAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CCA 72 bp | GTTACAAAAAGACCTTGTATCAAACCAGCAGGAAACTaGTCCGATCAATCACTGGGGGAAGCAAAGGCTGAG | + |
Preference number: 3 (lower is better) Translates to: VTKRPCIKPAGN*SDQSLGEAKAE Trigger: CTCAGCCTTTGCTTCCCCCAGTGATTGATCGGACCAGTTTCCTGCTGGTTTGATACAAGGTCTTTTTGTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR-3UTR CAA 90 bp | ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACACAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGT | + |
Preference number: 3 (lower is better) Translates to: MASKGLPPYNTKAKETNTQALRL*VLEALC Trigger: ACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTG...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR TCA 72 bp | AAGGTTGTAGGTATATGCCGCTACACCCAGGTCGGCTaGCTCTTAAACCATGGAGAAAGACATTTTGTGGAT | + |
Preference number: 3 (lower is better) Translates to: KVVGICRYTQVG*LLNHGERHFVD Trigger: ATCCACAAAATGTCTTTCTCCATGGTTTAAGAGTCAGCCGACCTGGGTGTAGCGGCATATACCTACAACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR GCA 72 bp | CTGGAACCAAACAATGTAAGATGGCCTCGAAAGGCCTaGCTCCTTATAACACAAAAGCCAAAGAGACAAACA | + |
Preference number: 3 (lower is better) Translates to: LEPNNVRWPRKA*LLITQKPKRQT Trigger: TGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 72 bp | AAGGTGGTTGGTTTTCTGGAACCAAACAATGTAAGATaGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAG | + |
Preference number: 3 (lower is better) Translates to: KVVGFLEPNNVR*PRKACLLITQK Trigger: CTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAACCACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CCA 72 bp | ATTATCTTTAATTATGAGCATTTGCGCAGGTATCCATaGAGGCCAGAGGCATTAAATTCCCTGAAGCTGGAC | + |
Preference number: 3 (lower is better) Translates to: IIFNYEHLRRYP*RPEALNSLKLD Trigger: GTCCAGCTTCAGGGAATTTAATGCCTCTGGCCTCCATGGATACCTGCGCAAATGCTCATAATTAAAGATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR GCA 90 bp | ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCAGCTGGTTCAGCTGCTaGATGTCTCCGCGCACGGCC | + |
Preference number: 4 (lower is better) Translates to: TRVTPLLTHCPHHPPFLSSWFSC*MSPRTA Trigger: GGCCGTGCGCGGAGACATGCAGCAGCTGAACCAGCT...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR TCA 90 bp | ACACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCGCAAATTCAGAGAGCTaGGCCAGAAATCGCTCCACC | + |
Preference number: 4 (lower is better) Translates to: TRVTPLLTHCPHHPPFLSANSES*ARNRST Trigger: GGTGGAGCGATTTCTGGCTCAGCTCTCTGAATTTGC...GCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR GCA 90 bp | ATGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACATCGGGCACCGGGTCCTaGGTGCAGTGCAGGCGGCCC | + |
Preference number: 4 (lower is better) Translates to: MASKGLPPYNTKAKETNTSGTGS*VQCRRP Trigger: GGGCCGCCTGCACTGCACGCAGGACCCGGTGCCCGA...TGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR TCA 90 bp | CAAAGAGCAGGAAGCACTCTTAACCACAGAGCCGTCAGTCTCGCCCCCATGGCTTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCA | + |
Preference number: 4 (lower is better) Translates to: QRAGSTLNHRAVSLAPMALTIRV*PMAHCA Trigger: TGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAA...AGCCATGGGGGCGAGACTGACGGCTCTGTGGTTAAGAGTGCTTCCTGCTCTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR CCA 90 bp | ACGTGTGACACCACTCCTGACACACTGTCCACACCACCCGCCCTTCCTCAGCCAATCGCTCCACCTCTTTaGGCTCAGTTAGGAAATGGA | + |
Preference number: 4 (lower is better) Translates to: TCDTTPDTLSTPPALPQPIAPPL*AQLGNG Trigger: TCCATTTCCTAACTGAGCCCAAAGAGGTGGAGCGAT...TGGCTGAGGAAGGGCGGGTGGTGTGGACAGTGTGTCAGGAGTGGTGTCACACGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR GCA 90 bp | ACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCAAACAGTAGGGTCGAGGCGTTCTaGTTCCACTTTTCAGAAAAG | + |
Preference number: 4 (lower is better) Translates to: TQTTRQTVAGNALPPPNSRVEAF*FHFSEK Trigger: CTTTTCTGAAAAGTGGAAGCAGAACGCCTCGACCCT...ACTGTTTGGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS-3UTR GCA 90 bp | GGCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCCTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAA | + |
Preference number: 4 (lower is better) Translates to: GFYTDDSADSGWQCPSPSLSLIH*SQTSLQ Trigger: TTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAG...GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CAA 72 bp | GTGGCCTTTTATGAGCCACCATGTGGTTGCTGGGATTaGAACTCGGGACCTTCAGAAGAGCAGTCGGGTGCT | + |
Preference number: 4 (lower is better) Translates to: VAFYEPPCGCWD*NSGPSEEQSGA Trigger: AGCACCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAAAAGGCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR GCA 90 bp | GGCAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACAAGGGTCGAGGCGTTCTaGTTCCACTTTTCAGAAAAG | + |
Preference number: 4 (lower is better) Translates to: GNALPPPNSVTRVTPLLTRVEAF*FHFSEK Trigger: CTTTTCTGAAAAGTGGAAGCAGAACGCCTCGACCCT...TGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CAA 72 bp | GAAGAATCAGGCAGCACTCCTCAAGCGCTGAGACTCTaGGTTTTAGAAGCTCTTTGTCCGCGGCCTCTCAAG | + |
Preference number: 4 (lower is better) Translates to: EESGSTPQALRL*VLEALCPRPLK Trigger: CTTGAGAGGCCGCGGACAAAGAGCTTCTAAAACCAAGAGTCTCAGCGCTTGAGGAGTGCTGCCTGATTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS-3UTR TCA 90 bp | TGGCCTCGAAAGGCCTGCCTCCTTATAACACAAAAGCCAAAGAGACAAACACAGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCA | + |
Preference number: 4 (lower is better) Translates to: WPRKACLLITQKPKRQTQLTIRV*PMAHCA Trigger: TGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAA...CTGTGTTTGTCTCTTTGGCTTTTGTGTTATAAGGAGGCAGGCCTTTCGAGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS-3UTR GCA 90 bp | CTTAACCAAAAGGTGGTTGGTTTTCTGGAACCAAACAATGTAAGATGGCCTCGACCCAGCTGGTTCAGCTaGTGCATGTCTCCGCGCACG | + |
Preference number: 4 (lower is better) Translates to: LNQKVVGFLEPNNVRWPRPSWFS*CMSPRT Trigger: CGTGCGCGGAGACATGCAGCAGCTGAACCAGCTGGG...TCGAGGCCATCTTACATTGTTTGGTTCCAGAAAACCAACCACCTTTTGGTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR GCA 90 bp | CAATGCCCTTCCCCCTCCAAACAGTGTGACACGTGTGACACCACTCCTGACACACTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAA | + |
Preference number: 4 (lower is better) Translates to: QCPSPSKQCDTCDTTPDTLSLIH*SQTSLQ Trigger: TTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAG...TGTGTCAGGAGTGGTGTCACACGTGTCACACTGTTTGGAGGGGGAAGGGCATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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3UTR CAA 72 bp | TGGATGGAAGGAAGAGTGCACATCCTGAAGGTTGTCTaGAATCCACAAGGCCCTAAACATGACTCAGCCAAC | + |
Preference number: 4 (lower is better) Translates to: WMEGRVHILKVV*NPQGPKHDSAN Trigger: GTTGGCTGAGTCATGTTTAGGGCCTTGTGGATTCAAGACAACCTTCAGGATGTGCACTCTTCCTTCCATCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CAA 72 bp | ATCAATCACTGGGGGAAGCAAAGGCTGAGGCGGCTCTaGCTTTTGATAAAGAGAGATCTCCATGTGAACTGG | + |
Preference number: 4 (lower is better) Translates to: INHWGKQRLRRL*LLIKRDLHVNW Trigger: CCAGTTCACATGGAGATCTCTCTTTATCAAAAGCAAGAGCCGCCTCAGCCTTTGCTTCCCCCAGTGATTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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3UTR CAA 72 bp | CAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTaGTATCAAACCAGCAGGAAACTGGTCCGATCAATC | + |
Preference number: 4 (lower is better) Translates to: QISEHPGCYKKT*YQTSRKLVRSI Trigger: GATTGATCGGACCAGTTTCCTGCTGGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR TCA 90 bp | AATCTTCAAATTTCAGAGCATCCAGGGTGTTACAAAAAGACCTTGTATCAAACCGGGCCAAGACTGATCTaGTTGCTGGTGGCAAATTCA | + |
Preference number: 4 (lower is better) Translates to: NLQISEHPGCYKKTLYQTGPRLI*LLVANS Trigger: TGAATTTGCCACCAGCAATCAGATCAGTCTTGGCCC...GGTTTGATACAAGGTCTTTTTGTAACACCCTGGATGCTCTGAAATTTGAAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS-3UTR CAA 90 bp | AAGTCACCCAGGAGCCGGAGGTGGTGGCTCCCAGTGGGGCTTGCAGAAGAATCAAATCGCTCCACCTCTTaGGGCTCAGTTAGGAAATGG | + |
Preference number: 5 (lower is better) Translates to: KSPRSRRWWLPVGLAEESNRSTS*GSVRKW Trigger: CCATTTCCTAACTGAGCCCAAAGAGGTGGAGCGATT...TGATTCTTCTGCAAGCCCCACTGGGAGCCACCACCTCCGGCTCCTGGGTGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS TCA 90 bp | CCAAACCTCCACTCCATATCAATCAGCTGGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCAAGGGTCGAGGCGTTCTGCTTCCAC | + |
Preference number: 5 (lower is better) Translates to: PNLHSISISWLTIRV*PMAHCARVEAFCFH Trigger: GTGGAAGCAGAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTGGAGGTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS-3UTR CAA 90 bp | GGCTTTTACACAGACGACTCGGCAGACAGTGGCTGGCAATGCCCTTCCCCCTCCCTTTTCATGATGCTTTaGAGGGGGCCAAGACTGATC | + |
Preference number: 5 (lower is better) Translates to: GFYTDDSADSGWQCPSPSLFMML*RGPRLI Trigger: GATCAGTCTTGGCCCCCTCAAAAGCATCATGAAAAG...GGAGGGGGAAGGGCATTGCCAGCCACTGTCTGCCGAGTCGTCTGTGTAAAAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000071852.10 |
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CDS GCA 90 bp | CCAACTTTAACTGTAAAAATATGCTTCCCACTTTCTCTAATTCACTaGTCCCAGACGTCACTCCAAACCTCCACTCCATATCAATCAGCT | + |
Preference number: 5 (lower is better) Translates to: PTLTVKICFPLSLIH*SQTSLQTSTPYQSA Trigger: AGCTGATTGATATGGAGTGGAGGTTTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAGTGGGAAGCATATTTTTACAGTTAAAGTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS TCA 72 bp | CACTCCATATCAATCAGCTGGTTAACCATCAGGGTCTaGCCCATGGCCCACTGTGCAAGGGTCGAGGCGTTC | + |
Preference number: 6 (lower is better) Translates to: HSISISWLTIRV*PMAHCARVEAF Trigger: GAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |
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CDS GCA 72 bp | CTGGTTAACCATCAGGGTCTGACCCATGGCCCACTGTaGAAGGGTCGAGGCGTTCTGCTTCCACTTTTCAGA | + |
Preference number: 6 (lower is better) Translates to: LVNHQGLTHGPL*KGRGVLLPLFR Trigger: TCTGAAAAGTGGAAGCAGAACGCCTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071852.10 ENSMUST00000109782.2 |