Pregenerated sensors for COMMD6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075486Ensembl transcript IDs: ENSMUST00000100339.9, ENSMUST00000168587.3
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCATGTGCGCCGGGTCCCCTGGAACCGGAGTTACAGAAAGTTGTaGGCTTCCATGTGGTTCTGGGAATTGAACCTGGGTCCTCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: LHVRRVPWNRSYRKL*ASMWFWELNLGPLR Trigger: TCTCAGAGGACCCAGGTTCAATTCCCAGAACCACATGGAAGCTCACAACTTTCTGTAACTCCGGTTCCAGGGGACCCGGCGCACATGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR CCA 90 bp | TCTCTCCAGCCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTaGTCCATATGCAGTTCTCATTTGGAAGGAAGGGTCCATTACTTT | + |
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Preference number: 1 (lower is better) Translates to: SLQPQKHSFHCIDVL*SICSSHLEGRVHYF Trigger: AAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGGCTGGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR GCA 90 bp | CCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTGGTCCATATaGAGTTCTCATTTGGAAGGAAGGGTCCATTACTTTAGAATAACG | + |
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Preference number: 1 (lower is better) Translates to: PQKHSFHCIDVLWSI*SSHLEGRVHYFRIT Trigger: CGTTATTCTAAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR-3UTR CCA 90 bp | CTCTTAACCTTCAAGCCATCTCTCCAGCCCCAGAAGCACAGCTTTCACTGTATATATGCAGTTCTCATTTaGAAGGAAGGGTCCATTACT | + |
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Preference number: 2 (lower is better) Translates to: LLTFKPSLQPQKHSFHCIYAVLI*KEGSIT Trigger: AGTAATGGACCCTTCCTTCCAAATGAGAACTGCATA...TATACAGTGAAAGCTGTGCTTCTGGGGCTGGAGAGATGGCTTGAAGGTTAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR CCA 72 bp | CCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTaGTCCATATGCAGTTCTCATTTGGAAGGAAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: PQKHSFHCIDVL*SICSSHLEGRV Trigger: GACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR GCA 72 bp | CACAGCTTTCACTGTATAGATGTCCTGTGGTCCATATaGAGTTCTCATTTGGAAGGAAGGGTCCATTACTTT | + |
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Preference number: 3 (lower is better) Translates to: HSFHCIDVLWSI*SSHLEGRVHYF Trigger: AAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR TCA 90 bp | CTGGGTCCTCTGAGAGAGCAGCCAGTGCTCTTAACCTTCAAGCCATCTCTCCAGCTTACTTGGCCAGAGTaGTCTGCCACCTTCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: LGPLREQPVLLTFKPSLQLTWPE*SATFSI Trigger: GATGCTGAAGGTGGCAGATCACTCTGGCCAAGTAAG...CTGGAGAGATGGCTTGAAGGTTAAGAGCACTGGCTGCTCTCTCAGAGGACCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR TCA 90 bp | CCATCTCTCCAGCCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTGGTCCCTTACTTGGCCAGAGTaGTCTGCCACCTTCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: PSLQPQKHSFHCIDVLWSLTWPE*SATFSI Trigger: GATGCTGAAGGTGGCAGATCACTCTGGCCAAGTAAG...GGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGGCTGGAGAGATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | CTTCAAGCCATCTCTCCAGCCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTTTGGCCAGAGTGATCTaGCACCTTCAGCATCACTGC | + |
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Preference number: 4 (lower is better) Translates to: LQAISPAPEAQLSLYRCPLARVI*HLQHHC Trigger: GCAGTGATGCTGAAGGTGGCAGATCACTCTGGCCAA...AGGACATCTATACAGTGAAAGCTGTGCTTCTGGGGCTGGAGAGATGGCTTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | AACCTGGGTCCTCTGAGAGAGCAGCCAGTGCTCTTAACCTTCAAGCCATCTCTCTCTCGATGGACTTGCTaGTTACTTGGCCAGAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: NLGPLREQPVLLTFKPSLSRWTC*LLGQSD Trigger: ATCACTCTGGCCAAGTAAGCAGCAAGTCCATCGAGA...GAGAGATGGCTTGAAGGTTAAGAGCACTGGCTGCTCTCTCAGAGGACCCAGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR TCA 90 bp | GTTGTGAGCTTCCATGTGGTTCTGGGAATTGAACCTGGGTCCTCTGAGAGAGCAATGCCCAGTTTCCACTaGAAATCTATAAGCTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VVSFHVVLGIEPGSSERAMPSFH*KSISWP Trigger: GGGCCAGCTTATAGATTTTCAGTGGAAACTGGGCAT...TGCTCTCTCAGAGGACCCAGGTTCAATTCCCAGAACCACATGGAAGCTCACAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100339.9 |
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| CDS-3UTR GCA 90 bp | TTGAACCTGGGTCCTCTGAGAGAGCAGCCAGTGCTCTTAACCTTCAAGCCATCTCAGAGCTCACAGCCATaGCCAGTTTCCACTGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: LNLGPLREQPVLLTFKPSQSSQP*PVSTEN Trigger: ATTTTCAGTGGAAACTGGGCATGGCTGTGAGCTCTG...AGATGGCTTGAAGGTTAAGAGCACTGGCTGCTCTCTCAGAGGACCCAGGTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | GTTGTGAGCTTCCATGTGGTTCTGGGAATTGAACCTGGGTCCTCTGAGAGAGCACACCTTCAGCATCACTaGCACGTAAGGATACTTGAG | + |
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Preference number: 4 (lower is better) Translates to: VVSFHVVLGIEPGSSERAHLQHH*HVRILE Trigger: CTCAAGTATCCTTACGTGGCAGTGATGCTGAAGGTG...TGCTCTCTCAGAGGACCCAGGTTCAATTCCCAGAACCACATGGAAGCTCACAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR TCA 90 bp | AACCTGGGTCCTCTGAGAGAGCAGCCAGTGCTCTTAACCTTCAAGCCATCTCTCCAGCGGCAATTTCTTTaGACTGTTTGTAGAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: NLGPLREQPVLLTFKPSLQRQFL*TVCRNS Trigger: AGAATTTCTACAAACAGTTCAAAGAAATTGCCGCTG...GAGAGATGGCTTGAAGGTTAAGAGCACTGGCTGCTCTCTCAGAGGACCCAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | CCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTGGTCCATATGCAGTTCTCACACCTTCAGCATCACTaGCACGTAAGGATACTTGAG | + |
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Preference number: 4 (lower is better) Translates to: PEAQLSLYRCPVVHMQFSHLQHH*HVRILE Trigger: CTCAAGTATCCTTACGTGGCAGTGATGCTGAAGGTG...TGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | ATAGATGTCCTGTGGTCCATATGCAGTTCTCATTTGGAAGGAAGGGTCCATTACCAGAGCTCACAGCCATaGCCAGTTTCCACTGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: IDVLWSICSSHLEGRVHYQSSQP*PVSTEN Trigger: ATTTTCAGTGGAAACTGGGCATGGCTGTGAGCTCTG...GTAATGGACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR GCA 90 bp | GCACAGCTTTCACTGTATAGATGTCCTGTGGTCCATATGCAGTTCTCATTTGGATCTCGATGGACTTGCTaGTTACTTGGCCAGAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: AQLSLYRCPVVHMQFSFGSRWTC*LLGQSD Trigger: ATCACTCTGGCCAAGTAAGCAGCAAGTCCATCGAGA...TCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR CCA 90 bp | CACTGTATAGATGTCCTGTGGTCCATATGCAGTTCTCATTTGGAAGGAAGGGTCGAAATTCTGAAATTGTaGAATTGTCATCTCGATGGA | + |
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Preference number: 4 (lower is better) Translates to: HCIDVLWSICSSHLEGRVEILKL*NCHLDG Trigger: TCCATCGAGATGACAATTCCACAATTTCAGAATTTC...GACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| 3UTR CAA 72 bp | TGTATAGATGTCCTGTGGTCCATATGCAGTTCTCATTaGGAAGGAAGGGTCCATTACTTTAGAATAACGAAT | + |
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Preference number: 4 (lower is better) Translates to: CIDVLWSICSSH*EGRVHYFRITN Trigger: ATTCGTTATTCTAAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATATGGACCACAGGACATCTATACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR TCA 90 bp | ATATGCAGTTCTCATTTGGAAGGAAGGGTCCATTACTTTAGAATAACGAATCAGCAGCGGCAATTTCTTTaGACTGTTTGTAGAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: ICSSHLEGRVHYFRITNQQRQFL*TVCRNS Trigger: AGAATTTCTACAAACAGTTCAAAGAAATTGCCGCTG...CTGATTCGTTATTCTAAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR CCA 90 bp | ATATGCAGTTCTCATTTGGAAGGAAGGGTCCATTACTTTAGAATAACGAATCAGGAAATTCTGAAATTGTaGAATTGTCATCTCGATGGA | + |
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Preference number: 4 (lower is better) Translates to: ICSSHLEGRVHYFRITNQEILKL*NCHLDG Trigger: TCCATCGAGATGACAATTCCACAATTTCAGAATTTC...CTGATTCGTTATTCTAAAGTAATGGACCCTTCCTTCCAAATGAGAACTGCATAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR CAA 90 bp | CAGCCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTGGTCCATATGCAGTGGACTTGCTGCTTACTaGGCCAGAGTGATCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QPQKHSFHCIDVLWSICSGLAAY*ARVICH Trigger: GTGGCAGATCACTCTGGCCAAGTAAGCAGCAAGTCC...ACTGCATATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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| CDS-3UTR CAA 90 bp | TCTCTCCAGCCCCAGAAGCACAGCTTTCACTGTATAGATGTCCTGTGGTCCATAGGACTTGCTGCTTACTaGGCCAGAGTGATCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SLQPQKHSFHCIDVLWSIGLAAY*ARVICH Trigger: GTGGCAGATCACTCTGGCCAAGTAAGCAGCAAGTCC...TATGGACCACAGGACATCTATACAGTGAAAGCTGTGCTTCTGGGGCTGGAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100339.9 ENSMUST00000168587.3 |
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