Pregenerated sensors for COMMD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055041Ensembl transcript IDs: ENSMUST00000068407.6, ENSMUST00000109793.3
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGGAGCAGGGTGTGTGTaGCCGCCAGCAGGACGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HHQCGWVLVPASAPHSTRGAGCV*PPAGRP Trigger: TGGCCGTCCTGCTGGCGGGCACACACACCCTGCTCC...CCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACGGCAGCCGGAGAGCCTaGTGGAGCAGGGTGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYGSRRA*WSRVCV Trigger: CACACACACCCTGCTCCAGCAGGCTCTCCGGCTGCC...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | CATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTGGCAGCCGGAGAGCCTaGTGGAGCAGGGTGTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: HPHHQCGWVLVPASAPHSGSRRA*WSRVCV Trigger: CACACACACCCTGCTCCAGCAGGCTCTCCGGCTGCC...ACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | CCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCCTGACAGGTTGGCGCTaGCACCAAGGTGCTGCACGG | + |
|
Preference number: 4 (lower is better) Translates to: PHHQCGWVLVPASAPHSTLTGWR*HQGAAR Trigger: CCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAG...GGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACAGCCGGAGAGCCTGCTaGAGCAGGGTGTGTGTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYSRRAC*SRVCVP Trigger: GGGCACACACACCCTGCTCCAGCAGGCTCTCCGGCT...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | ATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGGCTGCACGGCCTCTCTaGAGTCTTTCCCATGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ITSAAGFWYQLQHPTVPGAARPL*SLSHGG Trigger: CCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGC...CCCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCGCGCTGGCACCAAGGTaGTGCACGGCCTCTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SYILITSAAGFWYQLQHPALAPR*CTASLQ Trigger: CTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGC...GGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR TCA 90 bp | CATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTGGACTGAGCACTGGTTaGGATGGCCACATCCACCCG | + |
|
Preference number: 4 (lower is better) Translates to: HPHHQCGWVLVPASAPHSGLSTG*DGHIHP Trigger: CGGGTGGATGTGGCCATCTCAACCAGTGCTCAGTCC...ACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACGCTGCACGGCCTCTCTaGAGTCTTTCCCATGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYAARPL*SLSHGG Trigger: CCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGC...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | ATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACTGACAGGTTGGCGCTaGCACCAAGGTGCTGCACGG | + |
|
Preference number: 4 (lower is better) Translates to: ILITSAAGFWYQLQHPTVLTGWR*HQGAAR Trigger: CCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAG...TACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGCATCTGGTTTCAGACTaGCAGGGGGCAGCCGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSPVRLGSGTSFSTPQYQHLVSD*QGAAGE Trigger: CTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATG...CTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCATCTGGTTTCAGACTaGCAGGGGGCAGCCGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYHLVSD*QGAAGE Trigger: CTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATG...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR TCA 90 bp | TTCGAAACTGAGCCTCACTACGTAAAACCCAGCCAGGCCGGCCTTACATTTCACGGCCAGACGCTCCTCTaGCAGGTTGGCGCTGGCACC | + |
|
Preference number: 4 (lower is better) Translates to: FETEPHYVKPSQAGLTFHGQTLL*QVGAGT Trigger: GGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCC...GTGAAATGTAAGGCCGGCCTGGCTGGGTTTTACGTAGTGAGGCTCAGTTTCGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068407.6 |
||
| CDS-3UTR TCA 90 bp | ATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCAGGCCAGACGCTCCTCTaGCAGGTTGGCGCTGGCACC | + |
|
Preference number: 4 (lower is better) Translates to: MFLHPHHQCGWVLVPASAGQTLL*QVGAGT Trigger: GGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCC...TGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAACAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | CCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCACTTCTGCAGAGGGCTaGGAACCCAGGAAACTGACC | + |
|
Preference number: 4 (lower is better) Translates to: PHHQCGWVLVPASAPHSTTSAEG*EPRKLT Trigger: GGTCAGTTTCCTGGGTTCCCAGCCCTCTGCAGAAGT...GGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | ATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGGAGGATCCCTGCTGCTaGGCTACAGAGTCGAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ITSAAGFWYQLQHPTVPGEDPCC*ATESRR Trigger: TCTTCTCGACTCTGTAGCCCAGCAGCAGGGATCCTC...CCCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | ATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGCCTGGAATTTGGCTATaGGCACCTCGAAGCGGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ITSAAGFWYQLQHPTVPGPGIWL*APRSGV Trigger: CACACCGCTTCGAGGTGCCCATAGCCAAATTCCAGG...CCCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | CATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGCGTTGACTCCCAAATaGCAAACTGGCCAGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HHQCGWVLVPASAPHSTRALTPK*QTGQIS Trigger: GGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGC...CCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCCTGGAATTTGGCTATaGGCACCTCGAAGCGGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYPGIWL*APRSGV Trigger: CACACCGCTTCGAGGTGCCCATAGCCAAATTCCAGG...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACTTCTGCAGAGGGCTaGGAACCCAGGAAACTGACC | + |
|
Preference number: 4 (lower is better) Translates to: SYILITSAAGFWYQLQHPTSAEG*EPRKLT Trigger: GGTCAGTTTCCTGGGTTCCCAGCCCTCTGCAGAAGT...GGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCTTTCTCTCCAGCTCTaGCATCTCCTTAAGGACCAA | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYLSLQL*HLLKDQ Trigger: TTGGTCCTTAAGGAGATGGCAGAGCTGGAGAGAAAG...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | CATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTTCTCCAATCATATCTTaGGGAATGCCAAGTTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HPHHQCGWVLVPASAPHSSPIIS*GMPSSW Trigger: CCAGGAACTTGGCATTCCCCAAGATATGATTGGAGA...ACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR TCA 90 bp | TCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACGTTTCAACAACTTTCTaGAGGTGCTCCTGTCTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: SSSPVRLGSGTSFSTPQYVSTTF*RCSCLS Trigger: ACTTAGACAGGAGCACCTTCAGAAAGTTGTTGAAAC...GTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR TCA 90 bp | GCTGTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTGCAGGGAGCGGGACTaGGCACTGGTTGAGATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: AVFSLKICSYILITSAAGCRERD*ALVEMA Trigger: GGCCATCTCAACCAGTGCTCAGTCCCGCTCCCTGCA...CCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TTCGAAACTGAGCCTCACTACGTAAAACCCAGCCAGGCCGGCCTTACATTTCACGCGTTGACTCCCAAATaGCAAACTGGCCAGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FETEPHYVKPSQAGLTFHALTPK*QTGQIS Trigger: GGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGC...GTGAAATGTAAGGCCGGCCTGGCTGGGTTTTACGTAGTGAGGCTCAGTTTCGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068407.6 |
||
| CDS-3UTR TCA 90 bp | GTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGCAGGGAGCGGGACTaGGCACTGGTTGAGATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: VFSLKICSYILITSAAGFCRERD*ALVEMA Trigger: GGCCATCTCAACCAGTGCTCAGTCCCGCTCCCTGCA...GAACCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGCGCTGGCACCAAGGTaGTGCACGGCCTCTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SFHLKYVLTSSSPVRLGSALAPR*CTASLQ Trigger: CTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGC...AGAACCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | TTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCTCATATCTTGGGGAATaGCAAGTTCCTGGAGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: FLHPHHQCGWVLVPASAPSYLGE*QVPGVR Trigger: ACGAACTCCAGGAACTTGGCATTCCCCAAGATATGA...GGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCTCCCAAATGCCAAACTaGCCAGATCTCCAATCATAT | + |
|
Preference number: 4 (lower is better) Translates to: FLHPHHQCGWVLVPASAPSQMPN*PDLQSY Trigger: ATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGA...GGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TTCGAAACTGAGCCTCACTACGTAAAACCCAGCCAGGCCGGCCTTACATTTCACTCTCCAATCATATCTTaGGGAATGCCAAGTTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FETEPHYVKPSQAGLTFHSPIIS*GMPSSW Trigger: CCAGGAACTTGGCATTCCCCAAGATATGATTGGAGA...GTGAAATGTAAGGCCGGCCTGGCTGGGTTTTACGTAGTGAGGCTCAGTTTCGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068407.6 |
||
| CDS-3UTR CCA 90 bp | ATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCATCCCAAATGCCAAACTaGCCAGATCTCCAATCATAT | + |
|
Preference number: 4 (lower is better) Translates to: MFLHPHHQCGWVLVPASASQMPN*PDLQSY Trigger: ATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGA...TGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CCA 90 bp | TCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGAGGATCCCTGCTGCTaGGCTACAGAGTCGAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: SFHLKYVLTSSSPVRLGSEDPCC*ATESRR Trigger: TCTTCTCGACTCTGTAGCCCAGCAGCAGGGATCCTC...AGAACCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | GCTGTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGCTTTCTCTCCAGCTCTaGCATCTCCTTAAGGACCAA | + |
|
Preference number: 4 (lower is better) Translates to: AVFSLKICSYILITSAAGLSLQL*HLLKDQ Trigger: TTGGTCCTTAAGGAGATGGCAGAGCTGGAGAGAAAG...CCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR GCA 90 bp | GCTGTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTCATATCTTGGGGAATaGCAAGTTCCTGGAGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: AVFSLKICSYILITSAAGSYLGE*QVPGVR Trigger: ACGAACTCCAGGAACTTGGCATTCCCCAAGATATGA...CCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR TCA 90 bp | GCTGTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGGTTTCAACAACTTTCTaGAGGTGCTCCTGTCTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: AVFSLKICSYILITSAAGVSTTF*RCSCLS Trigger: ACTTAGACAGGAGCACCTTCAGAAAGTTGTTGAAAC...CCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 90 bp | GAGCAGGGTGTGTGTGCCCGCCAGCAGGACGGCCAGACGCTCCTCTaGCAGGTTGGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: EQGVCARQQDGQTLL*QVGAGTKVLHGLSA Trigger: TGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCACACACACCCTGCTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 90 bp | TGGAAGGCATCTGGTTTCAGACTGGCAGGGGGCAGCCGGAGAGCCTaGTGGAGCAGGGTGTGTGTGCCCGCCAGCAGGACGGCCAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: WKASGFRLAGGSRRA*WSRVCVPASRTARR Trigger: GCGTCTGGCCGTCCTGCTGGCGGGCACACACACCCTGCTCCAGCAGGCTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATGCCTTCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 90 bp | ACGGCCAGACGCTCCTCTGACAGGTTGGCGCTGGCACCAAGGTGCTaGACGGCCTCTCTGCAGTCTTTCCCATGGAGGGCCCCGACTACG | + |
|
Preference number: 5 (lower is better) Translates to: TARRSSDRLALAPRC*TASLQSFPWRAPTT Trigger: CGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 90 bp | AGGACGGCCAGACGCTCCTCTGACAGGTTGGCGCTGGCACCAAGGTaGTGCACGGCCTCTCTGCAGTCTTTCCCATGGAGGGCCCCGACT | + |
|
Preference number: 5 (lower is better) Translates to: RTARRSSDRLALAPR*CTASLQSFPWRAPT Trigger: AGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 90 bp | TGCCCGCCAGCAGGACGGCCAGACGCTCCTCTGACAGGTTGGCGCTaGCACCAAGGTGCTGCACGGCCTCTCTGCAGTCTTTCCCATGGA | + |
|
Preference number: 5 (lower is better) Translates to: CPPAGRPDAPLTGWR*HQGAARPLCSLSHG Trigger: TCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 90 bp | TGTGTGTGCCCGCCAGCAGGACGGCCAGACGCTCCTCTGACAGGTTaGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTGCAGTCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CVCPPAGRPDAPLTG*RWHQGAARPLCSLS Trigger: GGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCACACACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | CCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCCATGAGAACACTCGGTaGCAGGGAGCGGGACTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PHHQCGWVLVPASAPHSTHENTR*QGAGLS Trigger: GCTCAGTCCCGCTCCCTGCAACCGAGTGTTCTCATG...GGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 90 bp | ACTTCTGCAGAGGGCTGGGAACCCAGGAAACTGACCCGGCCGCTGTaGCTGTCAGTTGGATGGTGTAAGTATGGAGCCGCAGCCCCCAAC | + |
|
Preference number: 5 (lower is better) Translates to: TSAEGWEPRKLTRPL*LSVGWCKYGAAAPN Trigger: GTTGGGGGCTGCGGCTCCATACTTACACCATCCAACTGACAGTCACAGCGGCCGGGTCAGTTTCCTGGGTTCCCAGCCCTCTGCAGAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 90 bp | GGGCCACTGCCGTCACTTCTGCAGAGGGCTGGGAACCCAGGAAACTaGCCCGGCCGCTGTGACTGTCAGTTGGATGGTGTAAGTATGGAG | + |
|
Preference number: 5 (lower is better) Translates to: GPLPSLLQRAGNPGN*PGRCDCQLDGVSME Trigger: CTCCATACTTACACCATCCAACTGACAGTCACAGCGGCCGGGTCAGTTTCCTGGGTTCCCAGCCCTCTGCAGAAGTGACGGCAGTGGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 90 bp | CCTCTGACAGGTTGGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTaGAGTCTTTCCCATGGAGGGCCCCGACTACGAGTTTCAACAACT | + |
|
Preference number: 5 (lower is better) Translates to: PLTGWRWHQGAARPL*SLSHGGPRLRVSTT Trigger: AGTTGTTGAAACTCGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | CATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTGGGACTGAGCACTGGTaGAGATGGCCACATCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: HPHHQCGWVLVPASAPHSGTEHW*RWPHPP Trigger: GGGTGGATGTGGCCATCTCAACCAGTGCTCAGTCCC...ACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | TCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGCATGAGAACACTCGGTaGCAGGGAGCGGGACTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SSPVRLGSGTSFSTPQYQHENTR*QGAGLS Trigger: GCTCAGTCCCGCTCCCTGCAACCGAGTGTTCTCATG...CTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 90 bp | GCGCTGGCACCAAGGTGCTGCACGGCCTCTCTGCAGTCTTTCCCATaGAGGGCCCCGACTACGAGTTTCAACAACTTTCTGAAGGTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: ALAPRCCTASLQSFP*RAPTTSFNNFLKVL Trigger: GAGCACCTTCAGAAAGTTGTTGAAACTCGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | ATGTTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACGCTCCTCTGACAGGTaGGCGCTGGCACCAAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: MFLHPHHQCGWVLVPASARSSDR*ALAPRC Trigger: GCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCG...TGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAACAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | ATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCCACAGTACCAGGGGTCGAGAAGAGGGCGTaGACTCCCAAATGCCAAACT | + |
|
Preference number: 5 (lower is better) Translates to: ITSAAGFWYQLQHPTVPGVEKRA*TPKCQT Trigger: AGTTTGGCATTTGGGAGTCAACGCCCTCTTCTCGAC...CCCTGGTACTGTGGGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 90 bp | TCTCCAATCATATCTTGGGGAATGCCAAGTTCCTGGAGTTCGTCCTaGAAGGCATCTGGTTTCAGACTGGCAGGGGGCAGCCGGAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: SPIISWGMPSSWSSS*KASGFRLAGGSRRA Trigger: GGCTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | TTCTTACATCCTCATCACCAGTGCGGCTGGGTTCTGGTACCAGCTTCAGCACCCGTCGAGAAGAGGGCGTaGACTCCCAAATGCCAAACT | + |
|
Preference number: 5 (lower is better) Translates to: FLHPHHQCGWVLVPASAPVEKRA*TPKCQT Trigger: AGTTTGGCATTTGGGAGTCAACGCCCTCTTCTCGAC...GGGTGCTGAAGCTGGTACCAGAACCCAGCCGCACTGGTGATGAGGATGTAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS-3UTR CAA 90 bp | GCTGTCTTTTCACTTAAAATATGTTCTTACATCCTCATCACCAGTGCGGCTGGGCGCTCCTCTGACAGGTaGGCGCTGGCACCAAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: AVFSLKICSYILITSAAGRSSDR*ALAPRC Trigger: GCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCG...CCCAGCCGCACTGGTGATGAGGATGTAAGAACATATTTTAAGTGAAAAGACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 90 bp | TCCCAAATGCCAAACTGGCCAGATCTCCAATCATATCTTGGGGAATaGCAAGTTCCTGGAGTTCGTCCTGGAAGGCATCTGGTTTCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: SQMPNWPDLQSYLGE*QVPGVRPGRHLVSD Trigger: GTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 72 bp | GTGTGTGCCCGCCAGCAGGACGGCCAGACGCTCCTCTaGCAGGTTGGCGCTGGCACCAAGGTGCTGCACGGC | + |
|
Preference number: 6 (lower is better) Translates to: VCARQQDGQTLL*QVGAGTKVLHG Trigger: GCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCACACAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | CCGCCAGCAGGACGGCCAGACGCTCCTCTGACAGGTTaGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: PPAGRPDAPLTG*RWHQGAARPLC Trigger: GCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGG 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CAA 72 bp | CCCGCCAGCAGGACGGCCAGACGCTCCTCTGACAGGTaGGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: PASRTARRSSDR*ALAPRCCTASL Trigger: CAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CAA 90 bp | GTGTGTGTGCCCGCCAGCAGGACGGCCAGACGCTCCTCTGACAGGTaGGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTGCAGTCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: VCVPASRTARRSSDR*ALAPRCCTASLQSF Trigger: GAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGCTGGCGGGCACACACAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | GCAGGACGGCCAGACGCTCCTCTGACAGGTTGGCGCTaGCACCAAGGTGCTGCACGGCCTCTCTGCAGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: AGRPDAPLTGWR*HQGAARPLCSL Trigger: AAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCTGGCCGTCCTGC 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 72 bp | GGTTGGCGCTGGCACCAAGGTGCTGCACGGCCTCTCTaGAGTCTTTCCCATGGAGGGCCCCGACTACGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: GWRWHQGAARPL*SLSHGGPRLRV Trigger: AACTCGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 72 bp | AGACGCTCCTCTGACAGGTTGGCGCTGGCACCAAGGTaGTGCACGGCCTCTCTGCAGTCTTTCCCATGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RRSSDRLALAPR*CTASLQSFPWR Trigger: CCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGGTGCCAGCGCCAACCTGTCAGAGGAGCGTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 72 bp | GAGGGCTGGGAACCCAGGAAACTGACCCGGCCGCTGTaGCTGTCAGTTGGATGGTGTAAGTATGGAGCCGCA | + |
|
Preference number: 6 (lower is better) Translates to: EGWEPRKLTRPL*LSVGWCKYGAA Trigger: TGCGGCTCCATACTTACACCATCCAACTGACAGTCACAGCGGCCGGGTCAGTTTCCTGGGTTCCCAGCCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS TCA 72 bp | CCGTCACTTCTGCAGAGGGCTGGGAACCCAGGAAACTaGCCCGGCCGCTGTGACTGTCAGTTGGATGGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: PSLLQRAGNPGN*PGRCDCQLDGV Trigger: TACACCATCCAACTGACAGTCACAGCGGCCGGGTCAGTTTCCTGGGTTCCCAGCCCTCTGCAGAAGTGACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | AATGCCAAGTTCCTGGAGTTCGTCCTGGAAGGCATCTaGTTTCAGACTGGCAGGGGGCAGCCGGAGAGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: NAKFLEFVLEGI*FQTGRGQPESL Trigger: CAGGCTCTCCGGCTGCCCCCTGCCAGTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | CCAAGGTGCTGCACGGCCTCTCTGCAGTCTTTCCCATaGAGGGCCCCGACTACGAGTTTCAACAACTTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: PRCCTASLQSFP*RAPTTSFNNFL Trigger: CAGAAAGTTGTTGAAACTCGTAGTCGGGGCCCTCCATGGGAAAGACTGCAGAGAGGCCGTGCAGCACCTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | ATATCTTGGGGAATGCCAAGTTCCTGGAGTTCGTCCTaGAAGGCATCTGGTTTCAGACTGGCAGGGGGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ISWGMPSSWSSS*KASGFRLAGGS Trigger: GCTGCCCCCTGCCAGTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS GCA 72 bp | GGCTACAGAGTCGAGAAGAGGGCGTTGACTCCCAAATaGCAAACTGGCCAGATCTCCAATCATATCTTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: GYRVEKRALTPK*QTGQISNHILG Trigger: CCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGCCCTCTTCTCGACTCTGTAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CAA 90 bp | GCGTTGACTCCCAAATGCCAAACTGGCCAGATCTCCAATCATATCTaGGGGAATGCCAAGTTCCTGGAGTTCGTCCTGGAAGGCATCTGG | + |
|
Preference number: 6 (lower is better) Translates to: ALTPKCQTGQISNHI*GNAKFLEFVLEGIW Trigger: CCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | CCAAATGCCAAACTGGCCAGATCTCCAATCATATCTTaGGGAATGCCAAGTTCCTGGAGTTCGTCCTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: PNAKLARSPIIS*GMPSSWSSSWK Trigger: CTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | AGTCGAGAAGAGGGCGTTGACTCCCAAATGCCAAACTaGCCAGATCTCCAATCATATCTTGGGGAATGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: SREEGVDSQMPN*PDLQSYLGECQ Trigger: TTGGCATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGGAGTCAACGCCCTCTTCTCGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CAA 72 bp | CCCAAATGCCAAACTGGCCAGATCTCCAATCATATCTaGGGGAATGCCAAGTTCCTGGAGTTCGTCCTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: PKCQTGQISNHI*GNAKFLEFVLE Trigger: TTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGATCTGGCCAGTTTGGCATTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||
| CDS CCA 72 bp | AGATCTCCAATCATATCTTGGGGAATGCCAAGTTCCTaGAGTTCGTCCTGGAAGGCATCTGGTTTCAGACTG | + |
|
Preference number: 6 (lower is better) Translates to: RSPIISWGMPSS*SSSWKASGFRL Trigger: CAGTCTGAAACCAGATGCCTTCCAGGACGAACTCCAGGAACTTGGCATTCCCCAAGATATGATTGGAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068407.6 ENSMUST00000109793.3 |
||