RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COMMD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051154

Ensembl transcript IDs: ENSMUST00000061158.5, ENSMUST00000171845.8

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp TTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATaGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCT +
Preference number: 3 (lower is better)
Translates to: FPLKMTSSSRER*SSRRQGASGFP
Trigger: AGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCGCGTCCAGCAGGCTCTaGAAAGCCGCCCGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: QQETRRVWFSSRLLGSSAASSRL*KAARRR
Trigger: TCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGC...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGCGTCCAGCAGGCTCTaGAAAGCCGCCCGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: WSSRRQGASGFPLGSWGHASSRL*KAARRR
Trigger: TCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGC...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTCCGCCAGCGTCTGGATaGCTCTTTGCACAGACTCCG +
Preference number: 4 (lower is better)
Translates to: KMTSSSRERWSSRRQGASPPASG*LFAQTP
Trigger: CGGAGTCTGTGCAAAGAGGCATCCAGACGCTGGCGG...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGGATCCGCCAGCGTCTaGATGCCTCTTTGCACAGAC +
Preference number: 4 (lower is better)
Translates to: TSSSRERWSSRRQGASGFGSASV*MPLCTD
Trigger: GTCTGTGCAAAGAGGCATCCAGACGCTGGCGGATCC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGGATCCGCCAGCGTCTaGATGCCTCTTTGCACAGAC +
Preference number: 4 (lower is better)
Translates to: WSSRRQGASGFPLGSWGHGSASV*MPLCTD
Trigger: GTCTGTGCAAAGAGGCATCCAGACGCTGGCGGATCC...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGTCTGGATGCCTCTTTaGACAGACTCCGAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: KMTSSSRERWSSRRQGASVWMPL*TDSESS
Trigger: GGAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGAC...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp TTTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACACCGCCAGCGTCTGGATaGCTCTTTGCACAGACTCCG +
Preference number: 4 (lower is better)
Translates to: FSTENDIQLARTMVQQETPPASG*LFAQTP
Trigger: CGGAGTCTGTGCAAAGAGGCATCCAGACGCTGGCGG...TGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACT +
Preference number: 4 (lower is better)
Translates to: QQETRRVWFSSRLLGSSAVAAAA*QCFKTT
Trigger: AGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAAC...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGACTTGTCAACTTGGTaGTTTCCTGCCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: KMTSSSRERWSSRRQGASDLSTW*FPASRM
Trigger: CATCCTGGAGGCAGGAAAGCACCAAGTTGACAAGTC...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCTGGTTGGTCTTTATCTaGTACTCCAAGCGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: QQETRRVWFSSRLLGSSAWLVFI*YSKRQE
Trigger: TTCTTGGCGCTTGGAGTACCAGATAAAGACCAACCA...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp CGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACT +
Preference number: 4 (lower is better)
Translates to: RTMVQQETRRVWFSSRLLVAAAA*QCFKTT
Trigger: AGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAAC...CAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp ATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCGAAACATCAGTTATATaGGGGAGAGATCTGCCTATA +
Preference number: 4 (lower is better)
Translates to: IQLARTMVQQETRRVWFSETSVI*GRDLPI
Trigger: TATAGGCAGATCTCTCCCTCATATAACTGATGTTTC...GGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGGTCGGTACATCTTATaGAGTTGGTTGGTCTTTATC +
Preference number: 4 (lower is better)
Translates to: TSSSRERWSSRRQGASGFGRYIL*SWLVFI
Trigger: GATAAAGACCAACCAACTTCATAAGATGTACCGACC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp TTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAACTCCAGGATGCAAGTTaGAGCTGCTGCATGACAATG +
Preference number: 4 (lower is better)
Translates to: FPLKMTSSSRERWSSRRQLQDAS*SCCMTM
Trigger: CATTGTCATGCAGCAGCTGCAACTTGCATCCTGGAG...TTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp ATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGTTCTGATACTCGGTaGAAAACAGTTCTATTCGCT +
Preference number: 4 (lower is better)
Translates to: MVQQETRRVWFSSRLLGSCSDTR*KTVLFA
Trigger: AGCGAATAGAACTGTTTTGCACCGAGTATCAGAACA...TGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp TCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGTCTTTCCAGGCTTTTTaGAGCATCCTTAAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: STENDIQLARTMVQQETRSFQAF*SILKFP
Trigger: GGGAAACTTAAGGATGCTTCAAAAAGCCTGGAAAGA...CCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTTCTTATGAAGTTGGTTaGTCTTTATCTGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: KMTSSSRERWSSRRQGASSYEVG*SLSGTP
Trigger: TGGAGTACCAGATAAAGACCAACCAACTTCATAAGA...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTGTCTGGATGCCTCTTTaGACAGACTCCGAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: RRNARVILKIQMLKSLPLVWMPL*TDSESS
Trigger: GGAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGAC...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTTATGAGGGAGAGATCTaGCTATACTTCCCAGTAGGG +
Preference number: 4 (lower is better)
Translates to: RRNARVILKIQMLKSLPLYEGEI*LYFPVG
Trigger: CCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATA...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGACTTGTCAACTTGGTaGTTTCCTGCCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: RVILKIQMLKSLPLNHFTDLSTW*FPASRM
Trigger: CATCCTGGAGGCAGGAAAGCACCAAGTTGACAAGTC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGTAGACTTGTCAACTTaGTGCTTTCCTGCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: RVILKIQMLKSLPLNHFTVDLST*CFPASR
Trigger: CCTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTAC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTTCTTTCCAGGCTTTTTaGAGCATCCTTAAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: RRNARVILKIQMLKSLPLSFQAF*SILKFP
Trigger: GGGAAACTTAAGGATGCTTCAAAAAGCCTGGAAAGA...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp ATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACATGTGTATGGTTGGTCTTTATCTaGTACTCCAAGCGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: ILKIQMLKSLPLNHFTCVWLVFI*YSKRQE
Trigger: TTCTTGGCGCTTGGAGTACCAGATAAAGACCAACCA...TACACATGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CCA 90 bp AGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACTCTTATGAAGTTGGTTaGTCTTTATCTGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: RNARVILKIQMLKSLPLNSYEVG*SLSGTP
Trigger: TGGAGTACCAGATAAAGACCAACCAACTTCATAAGA...GTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR TCA 90 bp AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATA +
Preference number: 4 (lower is better)
Translates to: RVILKIQMLKSLPLNHFTETSVI*GRDLPI
Trigger: TATAGGCAGATCTCTCCCTCATATAACTGATGTTTC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR GCA 90 bp AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACATGTTCTGATACTCGGTaGAAAACAGTTCTATTCGCT +
Preference number: 4 (lower is better)
Translates to: RVILKIQMLKSLPLNHFTCSDTR*KTVLFA
Trigger: AGCGAATAGAACTGTTTTGCACCGAGTATCAGAACA...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS CCA 90 bp CCAGCAGGCTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTTaGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGATGCCTCTTT +
Preference number: 5 (lower is better)
Translates to: PAGSGKPPGGEARRR*SQRNRDPPASGCLF
Trigger: AAAGAGGCATCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CAA 90 bp TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCGTCTGGATGCCTCTTaGCACAGACTCCGAGAGCTC +
Preference number: 5 (lower is better)
Translates to: WSSRRQGASGFPLGSWGHRLDAS*HRLREL
Trigger: GAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACG...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CAA 90 bp AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTCGTCTGGATGCCTCTTaGCACAGACTCCGAGAGCTC +
Preference number: 5 (lower is better)
Translates to: KMTSSSRERWSSRRQGASRLDAS*HRLREL
Trigger: GAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACG...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CAA 90 bp ATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCAGTAGACTTGTCAACTaGGTGCTTTCCTGCCTCCAG +
Preference number: 5 (lower is better)
Translates to: IQLARTMVQQETRRVWFSSRLVN*VLSCLQ
Trigger: CTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTACT...GGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CAA 90 bp ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTAGTAGACTTGTCAACTaGGTGCTTTCCTGCCTCCAG +
Preference number: 5 (lower is better)
Translates to: TSSSRERWSSRRQGASGFSRLVN*VLSCLQ
Trigger: CTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTACT...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS-3UTR CAA 90 bp ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGTGCTTAGAGTAGACTaGTCAACTTGGTGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: TSSSRERWSSRRQGASGFVLRVD*STWCFP
Trigger: AGGAAAGCACCAAGTTGACAAGTCTACTCTAAGCAC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS TCA 90 bp ACTTGGTGCTTTCCTGCCTCCAGGATGCAAGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACTGGGTCGATCTGTTTCAAGTATGGG +
Preference number: 5 (lower is better)
Translates to: TWCFPASRMQVAAAA*QCFKTTGSICFKYG
Trigger: CCCATACTTGAAACAGATCGACCCAGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAACTTGCATCCTGGAGGCAGGAAAGCACCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS TCA 90 bp TTGGTCTTTATCTGGTACTCCAAGCGCCAAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATACTTCCCAGTAGGGTTTCTAGAGAA +
Preference number: 5 (lower is better)
Translates to: LVFIWYSKRQETSVI*GRDLPILPSRVSRE
Trigger: TTCTCTAGAAACCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGCTTGGAGTACCAGATAAAGACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS CAA 72 bp CTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTaGGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGG +
Preference number: 6 (lower is better)
Translates to: LWKAARRRSAKA*ESKEPGSASVW
Trigger: CCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS CCA 72 bp TCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTTaGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGA +
Preference number: 6 (lower is better)
Translates to: SGKPPGGEARRR*SQRNRDPPASG
Trigger: TCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS CAA 90 bp TCCAGCAGGCTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTaGGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGATGCCTCTT +
Preference number: 6 (lower is better)
Translates to: SSRLWKAARRRSAKA*ESKEPGSASVWMPL
Trigger: AAGAGGCATCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS TCA 72 bp ATCTGGTACTCCAAGCGCCAAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATACTTCCCAGTAGGGTT +
Preference number: 6 (lower is better)
Translates to: IWYSKRQETSVI*GRDLPILPSRV
Trigger: AACCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGCTTGGAGTACCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8
CDS TCA 72 bp TTTAAGGTCACCAAATATCCAGGTCGGTACATCTTATaGAGTTGGTTGGTCTTTATCTGGTACTCCAAGCGC +
Preference number: 6 (lower is better)
Translates to: FKVTKYPGRYIL*SWLVFIWYSKR
Trigger: GCGCTTGGAGTACCAGATAAAGACCAACCAACTTCATAAGATGTACCGACCTGGATATTTGGTGACCTTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061158.5
ENSMUST00000171845.8