Pregenerated sensors for COMMD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051154Ensembl transcript IDs: ENSMUST00000061158.5, ENSMUST00000171845.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATaGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: FPLKMTSSSRER*SSRRQGASGFP Trigger: AGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCGCGTCCAGCAGGCTCTaGAAAGCCGCCCGGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: QQETRRVWFSSRLLGSSAASSRL*KAARRR Trigger: TCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGC...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGCGTCCAGCAGGCTCTaGAAAGCCGCCCGGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: WSSRRQGASGFPLGSWGHASSRL*KAARRR Trigger: TCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGC...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTCCGCCAGCGTCTGGATaGCTCTTTGCACAGACTCCG | + |
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Preference number: 4 (lower is better) Translates to: KMTSSSRERWSSRRQGASPPASG*LFAQTP Trigger: CGGAGTCTGTGCAAAGAGGCATCCAGACGCTGGCGG...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGGATCCGCCAGCGTCTaGATGCCTCTTTGCACAGAC | + |
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Preference number: 4 (lower is better) Translates to: TSSSRERWSSRRQGASGFGSASV*MPLCTD Trigger: GTCTGTGCAAAGAGGCATCCAGACGCTGGCGGATCC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGGATCCGCCAGCGTCTaGATGCCTCTTTGCACAGAC | + |
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Preference number: 4 (lower is better) Translates to: WSSRRQGASGFPLGSWGHGSASV*MPLCTD Trigger: GTCTGTGCAAAGAGGCATCCAGACGCTGGCGGATCC...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGTCTGGATGCCTCTTTaGACAGACTCCGAGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KMTSSSRERWSSRRQGASVWMPL*TDSESS Trigger: GGAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGAC...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | TTTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACACCGCCAGCGTCTGGATaGCTCTTTGCACAGACTCCG | + |
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Preference number: 4 (lower is better) Translates to: FSTENDIQLARTMVQQETPPASG*LFAQTP Trigger: CGGAGTCTGTGCAAAGAGGCATCCAGACGCTGGCGG...TGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACT | + |
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Preference number: 4 (lower is better) Translates to: QQETRRVWFSSRLLGSSAVAAAA*QCFKTT Trigger: AGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAAC...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGACTTGTCAACTTGGTaGTTTCCTGCCTCCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: KMTSSSRERWSSRRQGASDLSTW*FPASRM Trigger: CATCCTGGAGGCAGGAAAGCACCAAGTTGACAAGTC...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCAGCCTGGTTGGTCTTTATCTaGTACTCCAAGCGCCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: QQETRRVWFSSRLLGSSAWLVFI*YSKRQE Trigger: TTCTTGGCGCTTGGAGTACCAGATAAAGACCAACCA...GGCTGATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | CGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACT | + |
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Preference number: 4 (lower is better) Translates to: RTMVQQETRRVWFSSRLLVAAAA*QCFKTT Trigger: AGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAAC...CAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | ATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCGAAACATCAGTTATATaGGGGAGAGATCTGCCTATA | + |
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Preference number: 4 (lower is better) Translates to: IQLARTMVQQETRRVWFSETSVI*GRDLPI Trigger: TATAGGCAGATCTCTCCCTCATATAACTGATGTTTC...GGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGGTCGGTACATCTTATaGAGTTGGTTGGTCTTTATC | + |
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Preference number: 4 (lower is better) Translates to: TSSSRERWSSRRQGASGFGRYIL*SWLVFI Trigger: GATAAAGACCAACCAACTTCATAAGATGTACCGACC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | TTTCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAACTCCAGGATGCAAGTTaGAGCTGCTGCATGACAATG | + |
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Preference number: 4 (lower is better) Translates to: FPLKMTSSSRERWSSRRQLQDAS*SCCMTM Trigger: CATTGTCATGCAGCAGCTGCAACTTGCATCCTGGAG...TTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | ATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATGTTCTGATACTCGGTaGAAAACAGTTCTATTCGCT | + |
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Preference number: 4 (lower is better) Translates to: MVQQETRRVWFSSRLLGSCSDTR*KTVLFA Trigger: AGCGAATAGAACTGTTTTGCACCGAGTATCAGAACA...TGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | TCCACTGAAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGTCTTTCCAGGCTTTTTaGAGCATCCTTAAGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: STENDIQLARTMVQQETRSFQAF*SILKFP Trigger: GGGAAACTTAAGGATGCTTCAAAAAGCCTGGAAAGA...CCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTTCAGTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTTCTTATGAAGTTGGTTaGTCTTTATCTGGTACTCCA | + |
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Preference number: 4 (lower is better) Translates to: KMTSSSRERWSSRRQGASSYEVG*SLSGTP Trigger: TGGAGTACCAGATAAAGACCAACCAACTTCATAAGA...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTGTCTGGATGCCTCTTTaGACAGACTCCGAGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RRNARVILKIQMLKSLPLVWMPL*TDSESS Trigger: GGAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGAC...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTTATGAGGGAGAGATCTaGCTATACTTCCCAGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: RRNARVILKIQMLKSLPLYEGEI*LYFPVG Trigger: CCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATA...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGACTTGTCAACTTGGTaGTTTCCTGCCTCCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: RVILKIQMLKSLPLNHFTDLSTW*FPASRM Trigger: CATCCTGGAGGCAGGAAAGCACCAAGTTGACAAGTC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGTAGACTTGTCAACTTaGTGCTTTCCTGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RVILKIQMLKSLPLNHFTVDLST*CFPASR Trigger: CCTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTAC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | AGAAGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTTCTTTCCAGGCTTTTTaGAGCATCCTTAAGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RRNARVILKIQMLKSLPLSFQAF*SILKFP Trigger: GGGAAACTTAAGGATGCTTCAAAAAGCCTGGAAAGA...AAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | ATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACATGTGTATGGTTGGTCTTTATCTaGTACTCCAAGCGCCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: ILKIQMLKSLPLNHFTCVWLVFI*YSKRQE Trigger: TTCTTGGCGCTTGGAGTACCAGATAAAGACCAACCA...TACACATGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CCA 90 bp | AGGAACGCAAGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACTCTTATGAAGTTGGTTaGTCTTTATCTGGTACTCCA | + |
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Preference number: 4 (lower is better) Translates to: RNARVILKIQMLKSLPLNSYEVG*SLSGTP Trigger: TGGAGTACCAGATAAAGACCAACCAACTTCATAAGA...GTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCTTGCGTTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR TCA 90 bp | AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATA | + |
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Preference number: 4 (lower is better) Translates to: RVILKIQMLKSLPLNHFTETSVI*GRDLPI Trigger: TATAGGCAGATCTCTCCCTCATATAACTGATGTTTC...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR GCA 90 bp | AGAGTAATACTGAAAATCCAGATGCTTAAGAGTCTCCCTCTTAACCATTTCACATGTTCTGATACTCGGTaGAAAACAGTTCTATTCGCT | + |
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Preference number: 4 (lower is better) Translates to: RVILKIQMLKSLPLNHFTCSDTR*KTVLFA Trigger: AGCGAATAGAACTGTTTTGCACCGAGTATCAGAACA...TGTGAAATGGTTAAGAGGGAGACTCTTAAGCATCTGGATTTTCAGTATTACTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS CCA 90 bp | CCAGCAGGCTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTTaGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGATGCCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: PAGSGKPPGGEARRR*SQRNRDPPASGCLF Trigger: AAAGAGGCATCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CAA 90 bp | TGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCTCTAGGCTCCTGGGGTCATCGTCTGGATGCCTCTTaGCACAGACTCCGAGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: WSSRRQGASGFPLGSWGHRLDAS*HRLREL Trigger: GAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACG...ATGACCCCAGGAGCCTAGAGGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CAA 90 bp | AAAATGACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTCGTCTGGATGCCTCTTaGCACAGACTCCGAGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: KMTSSSRERWSSRRQGASRLDAS*HRLREL Trigger: GAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACG...AGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGTCATTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CAA 90 bp | ATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTCCAGTAGACTTGTCAACTaGGTGCTTTCCTGCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: IQLARTMVQQETRRVWFSSRLVN*VLSCLQ Trigger: CTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTACT...GGAAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CAA 90 bp | ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTAGTAGACTTGTCAACTaGGTGCTTTCCTGCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: TSSSRERWSSRRQGASGFSRLVN*VLSCLQ Trigger: CTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTACT...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS-3UTR CAA 90 bp | ACATCCAGCTCGCGCGAACGATGGTCCAGCAGGAGACAAGGCGCGTCTGGTTTTGTGCTTAGAGTAGACTaGTCAACTTGGTGCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: TSSSRERWSSRRQGASGFVLRVD*STWCFP Trigger: AGGAAAGCACCAAGTTGACAAGTCTACTCTAAGCAC...AAAACCAGACGCGCCTTGTCTCCTGCTGGACCATCGTTCGCGCGAGCTGGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS TCA 90 bp | ACTTGGTGCTTTCCTGCCTCCAGGATGCAAGTTGCAGCTGCTGCATaGCAATGCTTTAAAACCACTGGGTCGATCTGTTTCAAGTATGGG | + |
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Preference number: 5 (lower is better) Translates to: TWCFPASRMQVAAAA*QCFKTTGSICFKYG Trigger: CCCATACTTGAAACAGATCGACCCAGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAACTTGCATCCTGGAGGCAGGAAAGCACCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS TCA 90 bp | TTGGTCTTTATCTGGTACTCCAAGCGCCAAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATACTTCCCAGTAGGGTTTCTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LVFIWYSKRQETSVI*GRDLPILPSRVSRE Trigger: TTCTCTAGAAACCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGCTTGGAGTACCAGATAAAGACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS CAA 72 bp | CTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTaGGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LWKAARRRSAKA*ESKEPGSASVW Trigger: CCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS CCA 72 bp | TCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTTaGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SGKPPGGEARRR*SQRNRDPPASG Trigger: TCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS CAA 90 bp | TCCAGCAGGCTCTGGAAAGCCGCCCGGAGGAGAAGCGCGAAGGCGTaGGAGTCAAAGGAACCGGGATCCGCCAGCGTCTGGATGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SSRLWKAARRRSAKA*ESKEPGSASVWMPL Trigger: AAGAGGCATCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACGCCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS TCA 72 bp | ATCTGGTACTCCAAGCGCCAAGAAACATCAGTTATATaGGGGAGAGATCTGCCTATACTTCCCAGTAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: IWYSKRQETSVI*GRDLPILPSRV Trigger: AACCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGCTTGGAGTACCAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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| CDS TCA 72 bp | TTTAAGGTCACCAAATATCCAGGTCGGTACATCTTATaGAGTTGGTTGGTCTTTATCTGGTACTCCAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: FKVTKYPGRYIL*SWLVFIWYSKR Trigger: GCGCTTGGAGTACCAGATAAAGACCAACCAACTTCATAAGATGTACCGACCTGGATATTTGGTGACCTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061158.5 ENSMUST00000171845.8 |
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