Pregenerated sensors for COMMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036513Ensembl transcript IDs: ENSMUST00000041954.10, ENSMUST00000160959.8
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGTGGTCGCCATTCTGATCGAGGTGCAGCTTTATGGTCACTGCTaGCTTAATCTGTTGCCGGAGACTTCTGCTTGCAAGCTGTACATC | + |
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Preference number: 1 (lower is better) Translates to: AVVAILIEVQLYGHC*LNLLPETSACKLYI Trigger: GATGTACAGCTTGCAAGCAGAAGTCTCCGGCAACAGATTAAGCCAGCAGTGACCATAAAGCTGCACCTCGATCAGAATGGCGACCACAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| 3UTR CCA 90 bp | TCTTGGTGTGTGTGTGTAGACCGAGTCTCTTCATGTGGCCCTAGCTaGCCTAGAATGTTCTGTAGAGCAAGCTGCCTTGGAATCACAGAG | + |
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Preference number: 1 (lower is better) Translates to: SWCVCVDRVSSCGPS*PRMFCRASCLGITE Trigger: CTCTGTGATTCCAAGGCAGCTTGCTCTACAGAACATTCTAGGCCAGCTAGGGCCACATGAAGAGACTCGGTCTACACACACACACCAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CCA 90 bp | ACACCCCTTTGTAAGTCTAGCTCCAAGGGATCCAATACCCTTTTCTaGCCACTGTGTGCACGAACACACAAGGTGCACAGACATACATGT | + |
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Preference number: 1 (lower is better) Translates to: TPLCKSSSKGSNTLF*PLCARTHKVHRHTC Trigger: ACATGTATGTCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATCCCTTGGAGCTAGACTTACAAAGGGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR TCA 90 bp | TACCACTATGCTAACTGCTTTCATCTTTTGATTGAGCTAAGACAATaGACCAAGGGGTGGAAGAAAGGTTGCTTAGAAGGACACAGGCTA | + |
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Preference number: 1 (lower is better) Translates to: YHYANCFHLLIELRQ*TKGWKKGCLEGHRL Trigger: TAGCCTGTGTCCTTCTAAGCAACCTTTCTTCCACCCCTTGGTTCATTGTCTTAGCTCAATCAAAAGATGAAAGCAGTTAGCATAGTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCTAGATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTGCACCAAAACGGAGCTaGGGCTCAGCTTCTGATCAA | + |
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Preference number: 2 (lower is better) Translates to: LLDELGLSLSTQWKLTPLAPKRS*GSASDQ Trigger: TTGATCAGAAGCTGAGCCGCAGCTCCGTTTTGGTGC...AAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCTAGCTCCAATACCCTTTTCTaGCCACTGTGTGCACGAACA | + |
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Preference number: 2 (lower is better) Translates to: LGLSLSTQWKLTPLCKSSSNTLF*PLCART Trigger: TGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGA...GCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CAA 90 bp | GTTTGGTGGTTAAGAGCACTGACTGCTCTTCTAGATGAGCTGGGTTaGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: VWWLRALTALLDELG*SLSTQWKLTPLCKS Trigger: AGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAGAGCAGTCAGTGCTCTTAACCACCAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCTAGATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTAAATGCTTTCCAACCTaGAAGAAGCTGACCGCATTC | + |
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Preference number: 2 (lower is better) Translates to: LLDELGLSLSTQWKLTPLKCFPT*KKLTAF Trigger: GAATGCGGTCAGCTTCTTGCAGGTTGGAAAGCATTT...AAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCTAGCGGTGTGTCTTTTAGTTaGTTTGGGAATGGGGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: LGLSLSTQWKLTPLCKSSGVSFS*FGNGGS Trigger: ACTTCCCCCATTCCCAAAGCAACTAAAAGACACACC...GCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | GCTAAGACAATGAACCAAGGGGTGGAAGAAAGGTTGCTTAGAAGGACACAGGCTAGCCTCAGCACCCAGTaGAAGCTTACACCCCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: AKTMNQGVEERLLRRTQASLSTQ*KLTPLC Trigger: ACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCT...AGCCTGTGTCCTTCTAAGCAACCTTTCTTCCACCCCTTGGTTCATTGTCTTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR TCA 90 bp | CTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCTAGCAAGATTTCAACATCCTaGGCAGGGAAAGAAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: LGLSLSTQWKLTPLCKSSKISTS*AGKETP Trigger: TGGAGTTTCTTTCCCTGCTCAGGATGTTGAAATCTT...GCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCTACTTGATGCTGCGGACTACTCTCCTGCAGTGGTTTGTTTTCATTTCCTCATGAAGCAGGGTAGCTaGGTCTGTCTGCAAGAAATG | + |
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Preference number: 2 (lower is better) Translates to: ELLDAADYSPAVVCFHFLMKQGS*VCLQEM Trigger: CATTTCTTGCAGACAGACCCAGCTACCCTGCTTCAT...GAGGAAATGAAAACAAACCACTGCAGGAGAGTAGTCCGCAGCATCAAGTAGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| 3UTR-3UTR CCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTGCCAGTGTCTCCAACTaGAAGGAAGGAAACCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: LMCMFVHHKEARKGCQIPASVSN*KEGNLR Trigger: TCTGAGGTTTCCTTCCTTCCAGTTGGAGACACTGGC...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | GATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTTGATCCATCTTAGTTaGTGCATCCTCTTTACACAC | + |
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Preference number: 2 (lower is better) Translates to: DELGLSLSTQWKLTPLCKLIHLS*CILFTH Trigger: GTGTGTAAAGAGGATGCACCAACTAAGATGGATCAA...CTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTGCTGGAGAGATGGTTTaGTGGTTAAGAGCACTGACT | + |
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Preference number: 2 (lower is better) Translates to: LMCMFVHHKEARKGCQIPAGEMV*WLRALT Trigger: AGTCAGTGCTCTTAACCACCAAACCATCTCTCCAGC...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR TCA 90 bp | GCTAAGACAATGAACCAAGGGGTGGAAGAAAGGTTGCTTAGAAGGACACAGGCTAGAAATCAGCAGTATTaGTCCATCTTAGTTGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: AKTMNQGVEERLLRRTQARNQQY*SILVGA Trigger: TGCACCAACTAAGATGGATCAATACTGCTGATTTCT...AGCCTGTGTCCTTCTAAGCAACCTTTCTTCCACCCCTTGGTTCATTGTCTTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR TCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTATTGAGCTAAGACAATaGACCAAGGGGTGGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LMCMFVHHKEARKGCQIPIELRQ*TKGWKK Trigger: TTTCTTCCACCCCTTGGTTCATTGTCTTAGCTCAAT...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR TCA 90 bp | GCTAGTAAGGCGGGGAAGGATCAAACAGTACAAAGACAGTACAATGATGTATATCTGCGGCTCAGCTTCTaGTCAAGATTTCAACATCCT | + |
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Preference number: 2 (lower is better) Translates to: ASKAGKDQTVQRQYNDVYLRLSF*SRFQHP Trigger: AGGATGTTGAAATCTTGATCAGAAGCTGAGCCGCAG...ATATACATCATTGTACTGTCTTTGTACTGTTTGATCCTTCCCCGCCTTACTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTAACAAAAACCTATTTTaGGGCTGGAGAGATGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: LMCMFVHHKEARKGCQIPNKNLF*GWRDGL Trigger: CAAACCATCTCTCCAGCCCCAAAATAGGTTTTTGTT...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | GCTAGTAAGGCGGGGAAGGATCAAACAGTACAAAGACAGTACAATGATGTATATTCATGTGGCCCTAGCTaGCCTAGAATGTTCTGTAGA | + |
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Preference number: 2 (lower is better) Translates to: ASKAGKDQTVQRQYNDVYSCGPS*PRMFCR Trigger: TCTACAGAACATTCTAGGCCAGCTAGGGCCACATGA...ATATACATCATTGTACTGTCTTTGTACTGTTTGATCCTTCCCCGCCTTACTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR TCA 90 bp | GCTAGTAAGGCGGGGAAGGATCAAACAGTACAAAGACAGTACAATGATGTATATTGTCAATATGCCAGATaGCCTGAGTTCTATCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: ASKAGKDQTVQRQYNDVYCQYAR*PEFYLQ Trigger: CTGGAGATAGAACTCAGGTCATCTGGCATATTGACA...ATATACATCATTGTACTGTCTTTGTACTGTTTGATCCTTCCCCGCCTTACTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTCAAGCCCCAATGCAATaGAATTTTATTCAGCTATAC | + |
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Preference number: 2 (lower is better) Translates to: LMCMFVHHKEARKGCQIPQAPMQ*NFIQLY Trigger: GTATAGCTGAATAAAATTCCATTGCATTGGGGCTTG...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCATCACCACAGAAATAATCAATATGAGAACAGTTGGGAGAACTGTTTTTGTCCTAACTTTAGCCTTTaGATGAAAACACACACAAAT | + |
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Preference number: 2 (lower is better) Translates to: AHHHRNNQYENSWENCFCPNFSL*MKTHTN Trigger: ATTTGTGTGTGTTTTCATCCAAAGGCTAAAGTTAGG...ACAAAAACAGTTCTCCCAACTGTTCTCATATTGATTATTTCTGTGGTGATGGGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR GCA 72 bp | GGCCCTAGCTGGCCTAGAATGTTCTGTAGAGCAAGCTaGCTTGGAATCACAGAGCTCTGTCTCCTAGGCACT | + |
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Preference number: 3 (lower is better) Translates to: GPSWPRMFCRAS*LGITELCLLGT Trigger: AGTGCCTAGGAGACAGAGCTCTGTGATTCCAAGGCAGCTTGCTCTACAGAACATTCTAGGCCAGCTAGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR TCA 72 bp | GGTTTGGTGGTTAAGAGCACTGACTGCTCTTCTAGATaGGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCT | + |
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Preference number: 3 (lower is better) Translates to: GLVVKSTDCSSR*AGFEPQHPVEA Trigger: AGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAGAGCAGTCAGTGCTCTTAACCACCAAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CCA 72 bp | GTGTGTGTAGACCGAGTCTCTTCATGTGGCCCTAGCTaGCCTAGAATGTTCTGTAGAGCAAGCTGCCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: VCVDRVSSCGPS*PRMFCRASCLG Trigger: TCCAAGGCAGCTTGCTCTACAGAACATTCTAGGCCAGCTAGGGCCACATGAAGAGACTCGGTCTACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR GCA 72 bp | AGCTTGGCAGGGAGGCTACCTTTAAACCCCGTGACATaGACTGCTAACTCATGGTTTCCTTCCTTGTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: SLAGRLPLNPVT*TANSWFPSLWV Trigger: AACCCACAAGGAAGGAAACCATGAGTTAGCAGTGCATGTCACGGGGTTTAAAGGTAGCCTCCCTGCCAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CCA 72 bp | GCCATTCTGATCGAGGTGCAGCTTTATGGTCACTGCTaGCTTAATCTGTTGCCGGAGACTTCTGCTTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: AILIEVQLYGHC*LNLLPETSACK Trigger: CTTGCAAGCAGAAGTCTCCGGCAACAGATTAAGCCAGCAGTGACCATAAAGCTGCACCTCGATCAGAATGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| 3UTR CCA 72 bp | CAGAGCTACTTGATGCTGCGGACTACTCTCCTGCAGTaGTTTGTTTTCATTTCCTCTAACGCCTGCTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: QSYLMLRTTLLQ*FVFISSNACSS Trigger: GCTGGAGCAGGCGTTAGAGGAAATGAAAACAAACCACTGCAGGAGAGTAGTCCGCAGCATCAAGTAGCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| 3UTR CCA 72 bp | CTTCTAGATGAGCTGGGTTTGAGCCTCAGCACCCAGTaGAAGCTTACACCCCTTTGTAAGTCTAGCTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: LLDELGLSLSTQ*KLTPLCKSSSK Trigger: CTTGGAGCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR TCA 72 bp | GTCTCCAACTGGAAGGAAGGAAACCTCAGAGCTACTTaGTGCTGCGGACTACTCTCCTGCAGTGGTTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: VSNWKEGNLRAT*CCGLLSCSGLF Trigger: AAACAAACCACTGCAGGAGAGTAGTCCGCAGCATCAAGTAGCTCTGAGGTTTCCTTCCTTCCAGTTGGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| 3UTR TCA 72 bp | GCTGCGGCTCAGCTTCTGATCAAGATTTCAACATCCTaGGCAGGGAAAGAAACTCCACGAATCCAGACGTAC | + |
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Preference number: 3 (lower is better) Translates to: AAAQLLIKISTS*AGKETPRIQTY Trigger: GTACGTCTGGATTCGTGGAGTTTCTTTCCCTGCTCAGGATGTTGAAATCTTGATCAGAAGCTGAGCCGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041954.10 ENSMUST00000160959.8 |
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| 3UTR CCA 72 bp | TGTAAGTCTAGCTCCAAGGGATCCAATACCCTTTTCTaGCCACTGTGTGCACGAACACACAAGGTGCACAGA | + |
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Preference number: 3 (lower is better) Translates to: CKSSSKGSNTLF*PLCARTHKVHR Trigger: TCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATCCCTTGGAGCTAGACTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCTAGCTGTCTTTTAGTTGCTTaGGGAATGGGGGAAGTTAGT | + |
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Preference number: 3 (lower is better) Translates to: LGLSLSTQWKLTPLCKSSCLLVA*GMGEVS Trigger: ACTAACTTCCCCCATTCCCAAAGCAACTAAAAGACA...GCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR TCA 72 bp | GCATTCAGCACCAAAACGGAGCTGCGGCTCAGCTTCTaGTCAAGATTTCAACATCCTGAGCAGGGAAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: AFSTKTELRLSF*SRFQHPEQGKK Trigger: TTTCTTTCCCTGCTCAGGATGTTGAAATCTTGATCAGAAGCTGAGCCGCAGCTCCGTTTTGGTGCTGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041954.10 ENSMUST00000160959.8 |
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| 3UTR TCA 72 bp | ATCCAAGTCCGAAGAGTCCACAGAAATCAGCAGTATTaGTCCATCTTAGTTGGTGCATCCTCTTTACACACT | + |
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Preference number: 3 (lower is better) Translates to: IQVRRVHRNQQY*SILVGASSLHT Trigger: AGTGTGTAAAGAGGATGCACCAACTAAGATGGATCAATACTGCTGATTTCTGTGGACTCTTCGGACTTGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041954.10 ENSMUST00000160959.8 |
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| 3UTR-3UTR CAA 90 bp | GCCCATCACCACAGAAATAATCAATATGAGAACAGTTGGGAGAACTGTTTTTGTAAACAAAAACCTATTTaGGGGCTGGAGAGATGGTTT | + |
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Preference number: 3 (lower is better) Translates to: AHHHRNNQYENSWENCFCKQKPI*GLERWF Trigger: AAACCATCTCTCCAGCCCCAAAATAGGTTTTTGTTT...ACAAAAACAGTTCTCCCAACTGTTCTCATATTGATTATTTCTGTGGTGATGGGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR GCA 90 bp | GATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGGGCAGGAAGGCCAAGTaGTCCTTGTGCTCCTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: DELGLSLSTQWKLTPLCKGRKAK*SLCSSD Trigger: GTCCGAGGAGCACAAGGAGCACTTGGCCTTCCTGCC...CTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR GCA 90 bp | GTCGCCATTCTGATCGAGGTGCAGCTTTATGGTCACTGCTGGCTTAATCTGTTGGGCAGGAAGGCCAAGTaGTCCTTGTGCTCCTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: VAILIEVQLYGHCWLNLLGRKAK*SLCSSD Trigger: GTCCGAGGAGCACAAGGAGCACTTGGCCTTCCTGCC...CAACAGATTAAGCCAGCAGTGACCATAAAGCTGCACCTCGATCAGAATGGCGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS-3UTR GCA 90 bp | GTCTGTCTGCAAGAAATGAGTGCTGTGGTCGCCATTCTGATCGAGGTGCAGCTTGCCAAGTGCTCCTTGTaGTCCTCGGACAAATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: VCLQEMSAVVAILIEVQLAKCSL*SSDKSS Trigger: GCTGGATTTGTCCGAGGAGCACAAGGAGCACTTGGC...AAGCTGCACCTCGATCAGAATGGCGACCACAGCACTCATTTCTTGCAGACAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS-3UTR GCA 90 bp | GACTTCTGCTTGCAAGCTGTACATCTAGCCGCCACTCAAGACTATGGTAACTGGACTGCAGTGTCCACTTaGGGCAGGAAGGCCAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: DFCLQAVHLAATQDYGNWTAVST*GRKAKC Trigger: GCACTTGGCCTTCCTGCCGCAAGTGGACACTGCAGT...CCAGTTACCATAGTCTTGAGTGGCGGCTAGATGTACAGCTTGCAAGCAGAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS-3UTR CCA 90 bp | CTTCTAGATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTCCTTCCACACCATGCTaGATAGTGTCACTACTCACG | + |
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Preference number: 4 (lower is better) Translates to: LLDELGLSLSTQWKLTPLPSTPC*IVSLLT Trigger: CGTGAGTAGTGACACTATCCAGCATGGTGTGGAAGG...AAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR TCA 90 bp | GATCCAATACCCTTTTCTGGCCACTGTGTGCACGAACACACAAGGTGCACAGACTCTGTCTGCAAGAAATaGGTGCTGTGGTCGCCATTC | + |
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Preference number: 4 (lower is better) Translates to: DPIPFSGHCVHEHTRCTDSVCKK*VLWSPF Trigger: GAATGGCGACCACAGCACTCATTTCTTGCAGACAGA...GTCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR GCA 90 bp | GCTAAGACAATGAACCAAGGGGTGGAAGAAAGGTTGCTTAGAAGGACACAGGCTGCCAAGTGCTCCTTGTaGTCCTCGGACAAATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: AKTMNQGVEERLLRRTQAAKCSL*SSDKSS Trigger: GCTGGATTTGTCCGAGGAGCACAAGGAGCACTTGGC...AGCCTGTGTCCTTCTAAGCAACCTTTCTTCCACCCCTTGGTTCATTGTCTTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CAA 72 bp | TTAAGAGCACTGACTGCTCTTCTAGATGAGCTGGGTTaGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LRALTALLDELG*SLSTQWKLTPL Trigger: AAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATCTAGAAGAGCAGTCAGTGCTCTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR CCA 90 bp | GATCCAATACCCTTTTCTGGCCACTGTGTGCACGAACACACAAGGTGCACAGACATGAAGCAGGGTAGCTaGGTCTGTCTGCAAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: DPIPFSGHCVHEHTRCTDMKQGS*VCLQEM Trigger: CATTTCTTGCAGACAGACCCAGCTACCCTGCTTCAT...GTCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CAA 72 bp | TGTCTCCAACTGGAAGGAAGGAAACCTCAGAGCTACTaGATGCTGCGGACTACTCTCCTGCAGTGGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: CLQLEGRKPQSY*MLRTTLLQWFV Trigger: AACAAACCACTGCAGGAGAGTAGTCCGCAGCATCAAGTAGCTCTGAGGTTTCCTTCCTTCCAGTTGGAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS-3UTR TCA 90 bp | CTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGTCTAGCAGAAATCATAAGCTTTaGGCTCTCGGTGAGGAGATA | + |
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Preference number: 4 (lower is better) Translates to: LGLSLSTQWKLTPLCKSSRNHKL*ALGEEI Trigger: TATCTCCTCACCGAGAGCTCAAAGCTTATGATTTCT...GCTAGACTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR GCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTGCTGGCTTAATCTGTTaGCGGAGACTTCTGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: LMCMFVHHKEARKGCQIPAGLIC*RRLLLA Trigger: TGCAAGCAGAAGTCTCCGGCAACAGATTAAGCCAGC...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR GCA 90 bp | GATCCAATACCCTTTTCTGGCCACTGTGTGCACGAACACACAAGGTGCACAGACTGCGGACTACTCTCCTaGAGTGGTTTGTTTTCATTT | + |
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Preference number: 4 (lower is better) Translates to: DPIPFSGHCVHEHTRCTDCGLLS*SGLFSF Trigger: AAATGAAAACAAACCACTGCAGGAGAGTAGTCCGCA...GTCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR CCA 90 bp | GATGAGCTGGGTTTGAGCCTCAGCACCCAGTGGAAGCTTACACCCCTTTGTAAGACTACTCTCCTGCAGTaGTTTGTTTTCATTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: DELGLSLSTQWKLTPLCKTTLLQ*FVFISS Trigger: AGAGGAAATGAAAACAAACCACTGCAGGAGAGTAGT...CTTACAAAGGGGTGTAAGCTTCCACTGGGTGCTGAGGCTCAAACCCAGCTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR TCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTGCTTTGAGCTCTCGGTaGGGAGATACGTTAATCCTT | + |
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Preference number: 4 (lower is better) Translates to: LMCMFVHHKEARKGCQIPALSSR*GDTLIL Trigger: AAGGATTAACGTATCTCCTCACCGAGAGCTCAAAGC...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| 3UTR CAA 72 bp | TATCCAAGTCCGAAGAGTCCACAGAAATCAGCAGTATaGATCCATCTTAGTTGGTGCATCCTCTTTACACAC | + |
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Preference number: 4 (lower is better) Translates to: YPSPKSPQKSAV*IHLSWCILFTH Trigger: GTGTGTAAAGAGGATGCACCAACTAAGATGGATCAATACTGCTGATTTCTGTGGACTCTTCGGACTTGGATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041954.10 ENSMUST00000160959.8 |
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| CDS-3UTR CCA 90 bp | CTTATGTGCATGTTTGTACACCACAAGGAAGCCAGAAAAGGGTGTCAGATCCCTACAAAGACAGAGTCTTaGAAATCCAGTTCAGAAATC | + |
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Preference number: 4 (lower is better) Translates to: LMCMFVHHKEARKGCQIPTKTES*KSSSEI Trigger: GATTTCTGAACTGGATTTCCAAGACTCTGTCTTTGT...AGGGATCTGACACCCTTTTCTGGCTTCCTTGTGGTGTACAAACATGCACATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS TCA 90 bp | ACTCACGTTCAGTTTTCTGGCGGCGCCTTCGTAGATCTTCGGGTTTaGGCCCCGTCGGAGGAACTCCACGGCGATCCTCCCGAACTCGGC | + |
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Preference number: 5 (lower is better) Translates to: THVQFSGGAFVDLRV*APSEELHGDPPELG Trigger: GCCGAGTTCGGGAGGATCGCCGTGGAGTTCCTCCGACGGGGCTCAAACCCGAAGATCTACGAAGGCGCCGCCAGAAAACTGAACGTGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR CAA 90 bp | GAAGGAAGGAAACCTCAGAGCTACTTGATGCTGCGGACTACTCTCCTGCAGTGGCACTGCAGTGTCCACTaGCGGCAGGAAGGCCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: EGRKPQSYLMLRTTLLQWHCSVH*RQEGQV Trigger: CACTTGGCCTTCCTGCCGCAAGTGGACACTGCAGTG...CCACTGCAGGAGAGTAGTCCGCAGCATCAAGTAGCTCTGAGGTTTCCTTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS-3UTR CAA 90 bp | GCTAAGACAATGAACCAAGGGGTGGAAGAAAGGTTGCTTAGAAGGACACAGGCTCACTGCAGTGTCCACTaGCGGCAGGAAGGCCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: AKTMNQGVEERLLRRTQAHCSVH*RQEGQV Trigger: CACTTGGCCTTCCTGCCGCAAGTGGACACTGCAGTG...AGCCTGTGTCCTTCTAAGCAACCTTTCTTCCACCCCTTGGTTCATTGTCTTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS GCA 90 bp | AGCTTTGAGCTCTCGGTGAGGAGATACGTTAATCCTTCCACACCATaGTGGATAGTGTCACTACTCACGTTCAGTTTTCTGGCGGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: SFELSVRRYVNPSTP*WIVSLLTFSFLAAP Trigger: AGGCGCCGCCAGAAAACTGAACGTGAGTAGTGACACTATCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACCGAGAGCTCAAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS CCA 90 bp | TTTGAGCTCTCGGTGAGGAGATACGTTAATCCTTCCACACCATGCTaGATAGTGTCACTACTCACGTTCAGTTTTCTGGCGGCGCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: FELSVRRYVNPSTPC*IVSLLTFSFLAAPS Trigger: CGAAGGCGCCGCCAGAAAACTGAACGTGAGTAGTGACACTATCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACCGAGAGCTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR CAA 90 bp | GATCCAATACCCTTTTCTGGCCACTGTGTGCACGAACACACAAGGTGCACAGACCTCTCCTGCAGTGGTTaGTTTTCATTTCCTCTAACG | + |
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Preference number: 5 (lower is better) Translates to: DPIPFSGHCVHEHTRCTDLSCSG*FSFPLT Trigger: CGTTAGAGGAAATGAAAACAAACCACTGCAGGAGAG...GTCTGTGCACCTTGTGTGTTCGTGCACACAGTGGCCAGAAAAGGGTATTGGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS CCA 90 bp | AATTTGTTTAGTTCTTCAGAGAATCCCAGAACAAAGACAGAGTCTTaGAAATCCAGTTCAGAAATCATAAGCTTTGAGCTCTCGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: NLFSSSENPRTKTES*KSSSEIISFELSVR Trigger: CCTCACCGAGAGCTCAAAGCTTATGATTTCTGAACTGGATTTCCAAGACTCTGTCTTTGTTCTGGGATTCTCTGAAGAACTAAACAAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS-3UTR CAA 90 bp | GCTAGTAAGGCGGGGAAGGATCAAACAGTACAAAGACAGTACAATGATGTATATAACAAAGACAGAGTCTaGGAAATCCAGTTCAGAAAT | + |
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Preference number: 5 (lower is better) Translates to: ASKAGKDQTVQRQYNDVYNKDRV*EIQFRN Trigger: ATTTCTGAACTGGATTTCCAAGACTCTGTCTTTGTT...ATATACATCATTGTACTGTCTTTGTACTGTTTGATCCTTCCCCGCCTTACTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS TCA 72 bp | CAGTTTTCTGGCGGCGCCTTCGTAGATCTTCGGGTTTaGGCCCCGTCGGAGGAACTCCACGGCGATCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: QFSGGAFVDLRV*APSEELHGDPP Trigger: GGGAGGATCGCCGTGGAGTTCCTCCGACGGGGCTCAAACCCGAAGATCTACGAAGGCGCCGCCAGAAAACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS TCA 72 bp | TCAGAAATTGGCGGCGCCTTCGTAGATCTTCGGGTTTaGGCCCCGTCGGAGGAACTCCACGGCGATCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: SEIGGAFVDLRV*APSEELHGDPP Trigger: GGGAGGATCGCCGTGGAGTTCCTCCGACGGGGCTCAAACCCGAAGATCTACGAAGGCGCCGCCAATTTCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041954.10 |
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| CDS CAA 72 bp | TCAGTTTTCTGGCGGCGCCTTCGTAGATCTTCGGGTTaGAGCCCCGTCGGAGGAACTCCACGGCGATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SVFWRRLRRSSG*SPVGGTPRRSS Trigger: GGAGGATCGCCGTGGAGTTCCTCCGACGGGGCTCAAACCCGAAGATCTACGAAGGCGCCGCCAGAAAACTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS CAA 90 bp | TACTCACGTTCAGTTTTCTGGCGGCGCCTTCGTAGATCTTCGGGTTaGAGCCCCGTCGGAGGAACTCCACGGCGATCCTCCCGAACTCGG | + |
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Preference number: 6 (lower is better) Translates to: YSRSVFWRRLRRSSG*SPVGGTPRRSSRTR Trigger: CCGAGTTCGGGAGGATCGCCGTGGAGTTCCTCCGACGGGGCTCAAACCCGAAGATCTACGAAGGCGCCGCCAGAAAACTGAACGTGAGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS CCA 72 bp | TCGGTGAGGAGATACGTTAATCCTTCCACACCATGCTaGATAGTGTCACTACTCACGTTCAGTTTTCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SVRRYVNPSTPC*IVSLLTFSFLA Trigger: CGCCAGAAAACTGAACGTGAGTAGTGACACTATCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS GCA 72 bp | CTCTCGGTGAGGAGATACGTTAATCCTTCCACACCATaGTGGATAGTGTCACTACTCACGTTCAGTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LSVRRYVNPSTP*WIVSLLTFSFL Trigger: CAGAAAACTGAACGTGAGTAGTGACACTATCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACCGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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| CDS CCA 72 bp | AGTTCTTCAGAGAATCCCAGAACAAAGACAGAGTCTTaGAAATCCAGTTCAGAAATCATAAGCTTTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: SSSENPRTKTES*KSSSEIISFEL Trigger: GAGCTCAAAGCTTATGATTTCTGAACTGGATTTCCAAGACTCTGTCTTTGTTCTGGGATTCTCTGAAGAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160959.8 |
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