RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COMMD1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000098650

Ensembl transcript IDs: ENSMUST00000160826.2

Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCAAGGGGGCCGGAGTACAGGAATCCACCACCCCCGGCATACGGTaGGTAGACGCCGGTGTAGAAGACTTCTGGGATGTAGTACTTCAG +
Preference number: 1 (lower is better)
Translates to: GKGAGVQESTTPGIR*VDAGVEDFWDVVLQ
Trigger: CTGAAGTACTACATCCCAGAAGTCTTCTACACCGGCGTCTACCCACCGTATGCCGGGGGTGGTGGATTCCTGTACTCCGGCCCCCTTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 90 bp ACCACCCCCGGCATACGGTGGGTAGACGCCGGTGTAGAAGACTTCTaGGATGTAGTACTTCAGTTTCTTATCCCGGTGAGGCCCAGCATT +
Preference number: 1 (lower is better)
Translates to: TTPGIRWVDAGVEDF*DVVLQFLIPVRPSI
Trigger: AATGCTGGGCCTCACCGGGATAAGAAACTGAAGTACTACATCCCAGAAGTCTTCTACACCGGCGTCTACCCACCGTATGCCGGGGGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 90 bp CAGCTTCTCCTGTTCCCTGTTCCAGTATGCCCGGGGAGTGCTGGGTaGCTTCCAGAACTTCTCTTTCGGGATTATTACTCCTCCCTTTCC +
Preference number: 1 (lower is better)
Translates to: QLLLFPVPVCPGSAG*LPELLFRDYYSSLS
Trigger: GGAAAGGGAGGAGTAATAATCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR GCA 90 bp ACCTGTTCAGCTTCTCCTGTTCCCTGTTCCAGTATGCCCGGGGAGTaGTGGGTGGCTTCCAGAACTTCTCTTTCGGGATTATTACTCCTC +
Preference number: 1 (lower is better)
Translates to: TCSASPVPCSSMPGE*WVASRTSLSGLLLL
Trigger: GAGGAGTAATAATCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGAAGCTGAACAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 90 bp TGTTCAGCTTCTCCTGTTCCCTGTTCCAGTATGCCCGGGGAGTGCTaGGTGGCTTCCAGAACTTCTCTTTCGGGATTATTACTCCTCCCT +
Preference number: 1 (lower is better)
Translates to: CSASPVPCSSMPGEC*VASRTSLSGLLLLP
Trigger: AGGGAGGAGTAATAATCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGAAGCTGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 90 bp ACTCTCAAACTTAAGCATGTCCGAAAGGTCAGGGTGGTTGTCCTCTaGGGGTGTCTTGCCCAACAGGAAGACCCTCACTACTGTCTGGTT +
Preference number: 1 (lower is better)
Translates to: TLKLKHVRKVRVVVL*GCLAQQEDPHYCLV
Trigger: AACCAGACAGTAGTGAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGGACAACCACCCTGACCTTTCGGACATGCTTAAGTTTGAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 90 bp GTTCACAAACACGTCATCATCGCCCTTGAAGACAAACTCTGCGTCTaGACAGGAAGTGCTCACCCACCTAAGAAACAGCACTTCCTTCAG +
Preference number: 1 (lower is better)
Translates to: VHKHVIIALEDKLCV*TGSAHPPKKQHFLQ
Trigger: CTGAAGGAAGTGCTGTTTCTTAGGTGGGTGAGCACTTCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR TCA 90 bp GGAATACGTGATAATATGGCAAGAATAGAATCTTGGGGTTTTAACTaGCTAATCACGTCCAAAGCTCAGAAGTGGCGAATGCTTCCCAGT +
Preference number: 1 (lower is better)
Translates to: GIRDNMARIESWGFN*LITSKAQKWRMLPS
Trigger: ACTGGGAAGCATTCGCCACTTCTGAGCTTTGGACGTGATTAGTCAGTTAAAACCCCAAGATTCTATTCTTGCCATATTATCACGTATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR TCA 90 bp AGACCCATGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACGCTAGCTCCCCTGTCTaGTTGGCCACCCTGTTCAAG +
Preference number: 2 (lower is better)
Translates to: RPMAVGLLSLQLAIRESHASSPV*LATLFK
Trigger: CTTGAACAGGGTGGCCAATCAGACAGGGGAGCTAGC...GTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCATGGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR GCA 90 bp AGACCCATGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACCCTCTGGGGGTGTCTTaGCCAACAGGAAGACCCTCA +
Preference number: 2 (lower is better)
Translates to: RPMAVGLLSLQLAIRESHPLGVS*PTGRPS
Trigger: TGAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGG...GTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCATGGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR GCA 90 bp GTTCACAAACACGTCATCATCGCCCTTGAAGACAAACTCTGCGTCTGGACAGGAAGTATGCCCGGGGAGTaGTGGGTGGCTTCCAGAACT +
Preference number: 2 (lower is better)
Translates to: VHKHVIIALEDKLCVWTGSMPGE*WVASRT
Trigger: AGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACT...TCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CCA 90 bp GTTCACAAACACGTCATCATCGCCCTTGAAGACAAACTCTGCGTCTGGACAGGAAGGGTGGTTGTCCTCTaGGGGTGTCTTGCCCAACAG +
Preference number: 2 (lower is better)
Translates to: VHKHVIIALEDKLCVWTGRVVVL*GCLAQQ
Trigger: CTGTTGGGCAAGACACCCCCAGAGGACAACCACCCT...TCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR TCA 90 bp TGGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACACAGAACTCACTCTATAGTTCCACATaGGGATGTCCTGGTGCTTGT +
Preference number: 2 (lower is better)
Translates to: WEPRGYLLMKANSLTQNSLYSST*GCPGAC
Trigger: ACAAGCACCAGGACATCCTCATGTGGAACTATAGAG...TGAGTTCTGTGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR GCA 90 bp TGGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACACAGAACTCAGACTCCCGAATTGCTTaGCTTCTGGCAAAATGTGGA +
Preference number: 2 (lower is better)
Translates to: WEPRGYLLMKANSLTQNSDSRIA*LLAKCG
Trigger: TCCACATTTTGCCAGAAGGCAAGCAATTCGGGAGTC...TGAGTTCTGTGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CCA 90 bp AGACCCATGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACCACATGAGGATGTCCTaGTGCTTGTCACTCTCAAAC +
Preference number: 2 (lower is better)
Translates to: RPMAVGLLSLQLAIRESHHMRMS*CLSLSN
Trigger: GTTTGAGAGTGACAAGCACCAGGACATCCTCATGTG...GTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCATGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR GCA 90 bp GTCAGGCTAGGCCTTTCTGTGAAATGCAGCTCATGTCTATTTCAGCATTTTAAATTCCCTGTTCCAGTATaGCCGGGGAGTGCTGGGTGG +
Preference number: 2 (lower is better)
Translates to: VRLGLSVKCSSCLFQHFKFPVPV*PGSAGW
Trigger: CCACCCAGCACTCCCCGGGCATACTGGAACAGGGAA...TTTAAAATGCTGAAATAGACATGAGCTGCATTTCACAGAAAGGCCTAGCCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CCA 90 bp GTTCACAAACACGTCATCATCGCCCTTGAAGACAAACTCTGCGTCTGGACAGGACCACCCTGTTCAAGATaGGATTGTACCACCTGTTCA +
Preference number: 2 (lower is better)
Translates to: VHKHVIIALEDKLCVWTGPPCSR*DCTTCS
Trigger: TGAACAGGTGGTACAATCCCATCTTGAACAGGGTGG...TCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR TCA 90 bp GTTCACAAACACGTCATCATCGCCCTTGAAGACAAACTCTGCGTCTGGACAGGATGGCAAAATGTGGAATaGGGGACTTTATCGCCAATA +
Preference number: 2 (lower is better)
Translates to: VHKHVIIALEDKLCVWTGWQNVE*GTLSPI
Trigger: TATTGGCGATAAAGTCCCTCATTCCACATTTTGCCA...TCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp GCCGGAGTACAGGAATCCACCACCCCCGGCATACGGTaGGTAGACGCCGGTGTAGAAGACTTCTGGGATGTA +
Preference number: 3 (lower is better)
Translates to: AGVQESTTPGIR*VDAGVEDFWDV
Trigger: TACATCCCAGAAGTCTTCTACACCGGCGTCTACCCACCGTATGCCGGGGGTGGTGGATTCCTGTACTCCGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp TTCCCTCTTCACAAGGCAAGGGAAGGACTGAGGGCTTaGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAAT +
Preference number: 3 (lower is better)
Translates to: FPLHKAREGLRA*EPRGYLLMKAN
Trigger: ATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCAAGCCCTCAGTCCTTCCCTTGCCTTGTGAAGAGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR GCA 72 bp GCTTCTCCTGTTCCCTGTTCCAGTATGCCCGGGGAGTaGTGGGTGGCTTCCAGAACTTCTCTTTCGGGATTA +
Preference number: 3 (lower is better)
Translates to: ASPVPCSSMPGE*WVASRTSLSGL
Trigger: TAATCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp ACAGGAAGACCCTCACTACTGTCTGGTTCCCTACGTTaGTTTCTCGGCCCCAAGACTCCCGAATTGCTTGCC +
Preference number: 3 (lower is better)
Translates to: TGRPSLLSGSLR*FLGPKTPELLA
Trigger: GGCAAGCAATTCGGGAGTCTTGGGGCCGAGAAACCAACGTAGGGAACCAGACAGTAGTGAGGGTCTTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp TCTCCTGTTCCCTGTTCCAGTATGCCCGGGGAGTGCTaGGTGGCTTCCAGAACTTCTCTTTCGGGATTATTA +
Preference number: 3 (lower is better)
Translates to: SPVPCSSMPGEC*VASRTSLSGLL
Trigger: TAATAATCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACAGGGAACAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp GGCATACGGTGGGTAGACGCCGGTGTAGAAGACTTCTaGGATGTAGTACTTCAGTTTCTTATCCCGGTGAGG +
Preference number: 3 (lower is better)
Translates to: GIRWVDAGVEDF*DVVLQFLIPVR
Trigger: CCTCACCGGGATAAGAAACTGAAGTACTACATCCCAGAAGTCTTCTACACCGGCGTCTACCCACCGTATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp TTGTGTTTGGAGATGTGGCTAGCTCCCCTGTCTGATTaGCCACCCTGTTCAAGATGGGATTGTACCACCTGT +
Preference number: 3 (lower is better)
Translates to: LCLEMWLAPLSD*PPCSRWDCTTC
Trigger: ACAGGTGGTACAATCCCATCTTGAACAGGGTGGCCAATCAGACAGGGGAGCTAGCCACATCTCCAAACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CAA 90 bp AGACCCATGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACGTAAGAAGGGCTTCTTaGCACATTTCTTCGGTTGAT +
Preference number: 3 (lower is better)
Translates to: RPMAVGLLSLQLAIRESHVRRAS*HISSVD
Trigger: ATCAACCGAAGAAATGTGCAAAGAAGCCCTTCTTAC...GTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCATGGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CAA 90 bp TGGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACACAGAACTCACCTATGAACAAGTCTTaGGCTTTGCTCTTGGATAAG +
Preference number: 3 (lower is better)
Translates to: WEPRGYLLMKANSLTQNSPMNKS*ALLLDK
Trigger: CTTATCCAAGAGCAAAGCCAAAGACTTGTTCATAGG...TGAGTTCTGTGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR GCA 72 bp CACAAACACGTCATCATCGCCCTTGAAGACAAACTCTaGGTCTGGACAGGAAGTGCTCACCCACCTAAGAAA +
Preference number: 3 (lower is better)
Translates to: HKHVIIALEDKL*VWTGSAHPPKK
Trigger: TTTCTTAGGTGGGTGAGCACTTCCTGTCCAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACGTGTTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp CCTCACACAGAACTCACCTATTGTGAGAGCACACCATaGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGC +
Preference number: 3 (lower is better)
Translates to: PHTELTYCESTP*ELVRLGLSVKC
Trigger: GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATAGGTGAGTTCTGTGTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CAA 90 bp TGGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACACAGAACTCACTTTCCATTTTTGTCTaGGCTACTGTTTTTGGAGAC +
Preference number: 3 (lower is better)
Translates to: WEPRGYLLMKANSLTQNSLSIFV*ATVFGD
Trigger: GTCTCCAAAAACAGTAGCCAAGACAAAAATGGAAAG...TGAGTTCTGTGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CAA 90 bp GTCAGGCTAGGCCTTTCTGTGAAATGCAGCTCATGTCTATTTCAGCATTTTAAATCCTCTGGGGGTGTCTaGCCCAACAGGAAGACCCTC +
Preference number: 3 (lower is better)
Translates to: VRLGLSVKCSSCLFQHFKSSGGV*PNRKTL
Trigger: GAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGGA...TTTAAAATGCTGAAATAGACATGAGCTGCATTTCACAGAAAGGCCTAGCCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp ACAGACCCATGGCTGTCGGGCTACTCAGTCTCCAGTTaGCCATTAGGGAATCACACTCATGATCTTCAAATA +
Preference number: 3 (lower is better)
Translates to: TDPWLSGYSVSS*PLGNHTHDLQI
Trigger: TATTTGAAGATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCATGGGTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR-3UTR CAA 90 bp GTCAGGCTAGGCCTTTCTGTGAAATGCAGCTCATGTCTATTTCAGCATTTTAAATCAGGTGACTTGTGTTaGGAGATGTGGCTAGCTCCC +
Preference number: 3 (lower is better)
Translates to: VRLGLSVKCSSCLFQHFKSGDLC*EMWLAP
Trigger: GGGAGCTAGCCACATCTCCAAACACAAGTCACCTGA...TTTAAAATGCTGAAATAGACATGAGCTGCATTTCACAGAAAGGCCTAGCCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CCA 72 bp ATTAAAATCTGTCACAGCTGTCATGACCGTCGAGTCTaGTTCACAATAGCTCAGGTGACTTGTGTTTGGAGA +
Preference number: 3 (lower is better)
Translates to: IKICHSCHDRRV*FTIAQVTCVWR
Trigger: TCTCCAAACACAAGTCACCTGAGCTATTGTGAACCAGACTCGACGGTCATGACAGCTGTGACAGATTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp CAGGAAGACCCTCACTACTGTCTGGTTCCCTACGTTGGTTTCTCGGCCCCAAGACAGCTTGCTCACTGGTaGTGCCACCTTGCTTTTTGG +
Preference number: 4 (lower is better)
Translates to: QEDPHYCLVPYVGFSAPRQLAHW*CHLAFW
Trigger: CCAAAAAGCAAGGTGGCATCACCAGTGAGCAAGCTG...TCTTGGGGCCGAGAAACCAACGTAGGGAACCAGACAGTAGTGAGGGTCTTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CAA 72 bp AACAGGAAGACCCTCACTACTGTCTGGTTCCCTACGTaGGTTTCTCGGCCCCAAGACTCCCGAATTGCTTGC +
Preference number: 4 (lower is better)
Translates to: NRKTLTTVWFPT*VSRPQDSRIAC
Trigger: GCAAGCAATTCGGGAGTCTTGGGGCCGAGAAACCAACGTAGGGAACCAGACAGTAGTGAGGGTCTTCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp TGGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACACAGAACTCATCCAAAACTTGGAGATaGCTGCAGCTTGCTCACTGG +
Preference number: 4 (lower is better)
Translates to: WEPRGYLLMKANSLTQNSSKTWR*LQLAHW
Trigger: CCAGTGAGCAAGCTGCAGTCATCTCCAAGTTTTGGA...TGAGTTCTGTGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp TGTTCCAGTATGCCCGGGGAGTGCTGGGTGGCTTCCAGAACTTCTCTTTCGGGAAGCGGCTCTGCTTCATaGGACTCTCTCGGATTTTTA +
Preference number: 4 (lower is better)
Translates to: CSSMPGECWVASRTSLSGSGSAS*DSLGFL
Trigger: TAAAAATCCGAGAGAGTCTCATGAAGCAGAGCCGCT...TCCCGAAAGAGAAGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACTGGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
3UTR CAA 72 bp TCGAGTCTGGTTCACAATAGCTCAGGTGACTTGTGTTaGGAGATGTGGCTAGCTCCCCTGTCTGATTGGCCA +
Preference number: 4 (lower is better)
Translates to: SSLVHNSSGDLC*EMWLAPLSDWP
Trigger: TGGCCAATCAGACAGGGGAGCTAGCCACATCTCCAAACACAAGTCACCTGAGCTATTGTGAACCAGACTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp GTTCACAATAGCTCAGGTGACTTGTGTTTGGAGATGTGGCTAGCTCCCCTGTCTATGCCTCTAACTGGTTaGAATCCATGTCTGCAGATG +
Preference number: 4 (lower is better)
Translates to: VHNSSGDLCLEMWLAPLSMPLTG*NPCLQM
Trigger: CATCTGCAGACATGGATTTCAACCAGTTAGAGGCAT...AGACAGGGGAGCTAGCCACATCTCCAAACACAAGTCACCTGAGCTATTGTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp GTCAGGCTAGGCCTTTCTGTGAAATGCAGCTCATGTCTATTTCAGCATTTTAAAGTTGAGTGCCGTGACTaGGACTTGCCATCGACTCTC +
Preference number: 4 (lower is better)
Translates to: VRLGLSVKCSSCLFQHFKVECRD*DLPSTL
Trigger: GAGAGTCGATGGCAAGTCTCAGTCACGGCACTCAAC...TTTAAAATGCTGAAATAGACATGAGCTGCATTTCACAGAAAGGCCTAGCCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS-3UTR TCA 90 bp GTCAGGCTAGGCCTTTCTGTGAAATGCAGCTCATGTCTATTTCAGCATTTTAAACCTTGCTTTTTGGTTTaGGCAGTCAGGAATGCCTCT +
Preference number: 4 (lower is better)
Translates to: VRLGLSVKCSSCLFQHFKPCFLV*AVRNAS
Trigger: AGAGGCATTCCTGACTGCTCAAACCAAAAAGCAAGG...TTTAAAATGCTGAAATAGACATGAGCTGCATTTCACAGAAAGGCCTAGCCTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CCA 90 bp TCCCAGCGGCTCTGCTTCATGAGACTCTCTCGGATTTTTATCTTGTaGCTCTTCCAAAACTTGGAGATGACTGCAGCTTGCTCACTGGTG +
Preference number: 5 (lower is better)
Translates to: SQRLCFMRLSRIFIL*LFQNLEMTAACSLV
Trigger: CACCAGTGAGCAAGCTGCAGTCATCTCCAAGTTTTGGAAGAGCCACAAGATAAAAATCCGAGAGAGTCTCATGAAGCAGAGCCGCTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 72 bp TTGCCATCGACTCTCCAGCTCAGGCCCCGAAGGCCGTaGTCCCAGCGGCTCTGCTTCATGAGACTCTCTCGG +
Preference number: 6 (lower is better)
Translates to: LPSTLQLRPRRP*SQRLCFMRLSR
Trigger: CCGAGAGAGTCTCATGAAGCAGAGCCGCTGGGACAACGGCCTTCGGGGCCTGAGCTGGAGAGTCGATGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS GCA 72 bp GGCTGTGTATCTGAGTTGAGTGCCGTGACTGAGACTTaGCATCGACTCTCCAGCTCAGGCCCCGAAGGCCGT +
Preference number: 6 (lower is better)
Translates to: GCVSELSAVTET*HRLSSSGPEGR
Trigger: ACGGCCTTCGGGGCCTGAGCTGGAGAGTCGATGGCAAGTCTCAGTCACGGCACTCAACTCAGATACACAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS GCA 72 bp CAGCTCAGGCCCCGAAGGCCGTTGTCCCAGCGGCTCTaGTTCATGAGACTCTCTCGGATTTTTATCTTGTGG +
Preference number: 6 (lower is better)
Translates to: QLRPRRPLSQRL*FMRLSRIFILW
Trigger: CCACAAGATAAAAATCCGAGAGAGTCTCATGAAGCAGAGCCGCTGGGACAACGGCCTTCGGGGCCTGAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 72 bp CCAGCTCTATTATGGCAACAGGGCTGTGTATCTGAGTaGAGTGCCGTGACTGAGACTTGCCATCGACTCTCC +
Preference number: 6 (lower is better)
Translates to: PALLWQQGCVSE*SAVTETCHRLS
Trigger: GGAGAGTCGATGGCAAGTCTCAGTCACGGCACTCAACTCAGATACACAGCCCTGTTGCCATAATAGAGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 90 bp TTCCAAATTCCAGCTCTATTATGGCAACAGGGCTGTGTATCTGAGTaGAGTGCCGTGACTGAGACTTGCCATCGACTCTCCAGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: FQIPALLWQQGCVSE*SAVTETCHRLSSSG
Trigger: GCCTGAGCTGGAGAGTCGATGGCAAGTCTCAGTCACGGCACTCAACTCAGATACACAGCCCTGTTGCCATAATAGAGCTGGAATTTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 90 bp TTGTCCCAGCGGCTCTGCTTCATGAGACTCTCTCGGATTTTTATCTaGTGGCTCTTCCAAAACTTGGAGATGACTGCAGCTTGCTCACTG +
Preference number: 6 (lower is better)
Translates to: LSQRLCFMRLSRIFI*WLFQNLEMTAACSL
Trigger: CAGTGAGCAAGCTGCAGTCATCTCCAAGTTTTGGAAGAGCCACAAGATAAAAATCCGAGAGAGTCTCATGAAGCAGAGCCGCTGGGACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 72 bp CTCTCTCGGATTTTTATCTTGTGGCTCTTCCAAAACTaGGAGATGACTGCAGCTTGCTCACTGGTGATGCCA +
Preference number: 6 (lower is better)
Translates to: LSRIFILWLFQN*EMTAACSLVMP
Trigger: TGGCATCACCAGTGAGCAAGCTGCAGTCATCTCCAAGTTTTGGAAGAGCCACAAGATAAAAATCCGAGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 72 bp CGGCTCTGCTTCATGAGACTCTCTCGGATTTTTATCTaGTGGCTCTTCCAAAACTTGGAGATGACTGCAGCT +
Preference number: 6 (lower is better)
Translates to: RLCFMRLSRIFI*WLFQNLEMTAA
Trigger: AGCTGCAGTCATCTCCAAGTTTTGGAAGAGCCACAAGATAAAAATCCGAGAGAGTCTCATGAAGCAGAGCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2
CDS CAA 90 bp TTCATGAGACTCTCTCGGATTTTTATCTTGTGGCTCTTCCAAAACTaGGAGATGACTGCAGCTTGCTCACTGGTGATGCCACCTTGCTTT +
Preference number: 6 (lower is better)
Translates to: FMRLSRIFILWLFQN*EMTAACSLVMPPCF
Trigger: AAAGCAAGGTGGCATCACCAGTGAGCAAGCTGCAGTCATCTCCAAGTTTTGGAAGAGCCACAAGATAAAAATCCGAGAGAGTCTCATGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160826.2