RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COMMD10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042705

Ensembl transcript IDs: ENSMUST00000049388.9, ENSMUST00000234085.2, ENSMUST00000234124.2, ENSMUST00000234280.2, ENSMUST00000234701.2, ENSMUST00000234944.2, ENSMUST00000234961.2

Found 177 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGCAGGTTAAGCTGCCATCCCACTGTC +
Preference number: 1 (lower is better)
Translates to: LTPSCSTAWGDCSFA*AEWAICRLSCHPTV
Trigger: GACAGTGGGATGGCAGCTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR GCA 90 bp CTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCATTTGCAGGTTAAGCTGCCATCCCAC +
Preference number: 1 (lower is better)
Translates to: LAHSQLQHGLGRLQL*LSRVGHLQVKLPSH
Trigger: GTGGGATGGCAGCTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CCA 90 bp GGCAGGCGTTCTTCTAAATATTCAGCACTATCAGGAACCAGATCTTaGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAG +
Preference number: 1 (lower is better)
Translates to: GRRSSKYSALSGTRS*RLPCSLPVAARPGE
Trigger: CTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGAATATTTAGAAGAACGCCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR GCA 90 bp TCTAAATATTCAGCACTATCAGGAACCAGATCTTGGCGTCTTCCTTaGTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTG +
Preference number: 1 (lower is better)
Translates to: SKYSALSGTRSWRLP*SLPVAARPGETAAL
Trigger: CAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGAATATTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR GCA 90 bp GTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTaGGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAAGGAAGCCAG +
Preference number: 1 (lower is better)
Translates to: VTESSRKYTWAVSLQ*ERVRWPECDGEGSQ
Trigger: CTGGCTTCCTTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
3UTR TCA 90 bp AAACCAAGAGACAGCCTACACTCTAGGAACCAGTGGTTAATGATGTaGGAGATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGAC +
Preference number: 1 (lower is better)
Translates to: KPRDSLHSRNQWLMM*EMGVRLIPQQRSFD
Trigger: GTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATCTCTCACATCATTAACCACTGGTTCCTAGAGTGTAGGCTGTCTCTTGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 90 bp CTTCTTACTTCTTTCGTTTTTCTCAACAATTGCTCTTGGCTCCTGTaGGGCGAGAAGGCACACTCGAAACCCAGTGCTCCTATTGTGATC +
Preference number: 1 (lower is better)
Translates to: LLTSFVFLNNCSWLL*GEKAHSKPSAPIVI
Trigger: GATCACAATAGGAGCACTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCAATTGTTGAGAAAAACGAAAGAAGTAAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR TCA 90 bp ACTGCATCCTGTAGTTACTCTTCCAGTAAAACAGCATGTGCTGTCTaGAATTGCTATGGGATCCTGGGAGCTCATTGCAAGAATGAGTTC +
Preference number: 1 (lower is better)
Translates to: TASCSYSSSKTACAV*NCYGILGAHCKNEF
Trigger: GAACTCATTCTTGCAATGAGCTCCCAGGATCCCATAGCAATTTCAGACAGCACATGCTGTTTTACTGGAAGAGTAACTACAGGATGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR TCA 90 bp GGAAGGGTAGACTCGTCATTTGGTAGGGGAAAAGACAACAAGATTTaGTTTCACGGTCGCTCCAGCAATAATAGCATAATCTTATCCGTT +
Preference number: 1 (lower is better)
Translates to: GRVDSSFGRGKDNKI*FHGRSSNNSIILSV
Trigger: AACGGATAAGATTATGCTATTATTGCTGGAGCGACCGTGAAATCAAATCTTGTTGTCTTTTCCCCTACCAAATGACGAGTCTACCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 90 bp CTAGGTGCTCAGAAATCATTTGCTAAATTAGCAAACAGTAGGTGTTaGGCTTCCACACACCACAGAGACAAAATTACTGGTAGTGGTTGC +
Preference number: 1 (lower is better)
Translates to: LGAQKSFAKLANSRC*ASTHHRDKITGSGC
Trigger: GCAACCACTACCAGTAATTTTGTCTCTGTGGTGTGTGGAAGCTCAACACCTACTGTTTGCTAATTTAGCAAATGATTTCTGAGCACCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 90 bp TCAGCTGACATCCATCTTCACCAAACACTTTACAGACATTTGTACTaGGAGTACAATTCCAGAACCACAGAGCTTACAAACAGAGCTTAC +
Preference number: 1 (lower is better)
Translates to: SADIHLHQTLYRHLY*EYNSRTTELTNRAY
Trigger: GTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTTGGTGAAGATGGATGTCAGCTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
3UTR GCA 90 bp GGGATGAACTCACAGCAGTACTGGTACCATTTTAGATTTCTTTCTTaGACTATACTTCAAGCAAAAGAACACTGCAGGACAAATGCCAAA +
Preference number: 1 (lower is better)
Translates to: GMNSQQYWYHFRFLS*TILQAKEHCRTNAK
Trigger: TTTGGCATTTGTCCTGCAGTGTTCTTTTGCTTGAAGTATAGTGCAAGAAAGAAATCTAAAATGGTACCAGTACTGCTGTGAGTTCATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR TCA 90 bp AGCAATAATAGCATAATCTTATCCGTTTGCAGCAAATACACAATCTaGAGCATTCAACCTCCCATAAAGGTATATCGCCTTCACTGTAGC +
Preference number: 1 (lower is better)
Translates to: SNNSIILSVCSKYTI*SIQPPIKVYRLHCS
Trigger: GCTACAGTGAAGGCGATATACCTTTATGGGAGGTTGAATGCTTCAGATTGTGTATTTGCTGCAAACGGATAAGATTATGCTATTATTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 90 bp ATTGCTATGGGATCCTGGGAGCTCATTGCAAGAATGAGTTCTAGTTaGTCATCTTTTTCAATATCATATACCATGACCTCCACAGTAAAT +
Preference number: 1 (lower is better)
Translates to: IAMGSWELIARMSSS*SSFSISYTMTSTVN
Trigger: ATTTACTGTGGAGGTCATGGTATATGATATTGAAAAAGATGATCAACTAGAACTCATTCTTGCAATGAGCTCCCAGGATCCCATAGCAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 90 bp GCTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTGCAGGTTAAGCTGCCATCCCACTGT +
Preference number: 2 (lower is better)
Translates to: AHSQLQHGLGRLQLC*SRVGHLQVKLPSHC
Trigger: ACAGTGGGATGGCAGCTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 90 bp CACTATCAGGAACCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTGAGCAGAGTG +
Preference number: 2 (lower is better)
Translates to: HYQEPDLGVFLAHSQ*QHGLGRLQLCLSRV
Trigger: CACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR-3UTR TCA 90 bp GATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGACAATACATGGCAGCAGGAAGCCAGACGAACTaGGGACACTGGAGCAGGAGC +
Preference number: 2 (lower is better)
Translates to: DGSQTNPSATLFRQYMAAGSQTN*GHWSRS
Trigger: GCTCCTGCTCCAGTGTCCTCAGTTCGTCTGGCTTCC...TGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR TCA 90 bp CTTCAAGCAAAAGAACACTGCAGGACAAATGCCAAAACATTTGACGGCCTGCGGTGCTCTTGGCTCCTGTaGGGCGAGAAGGCACACTCG +
Preference number: 2 (lower is better)
Translates to: LQAKEHCRTNAKTFDGLRCSWLL*GEKAHS
Trigger: CGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCA...CCGCAGGCCGTCAAATGTTTTGGCATTTGTCCTGCAGTGTTCTTTTGCTTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR CCA 90 bp TCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCAGGAGTGGGAGGGTTTCTAGAAAATATACTTaGGCAGTCTCTCTTCAGTGC +
Preference number: 2 (lower is better)
Translates to: SMPQYRGTSEPRSRSGRVSRKYT*AVSLQC
Trigger: GCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGA...AACCCTCCCACTCCTGCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR TCA 90 bp GATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGACAATACATGGCAGCATGTCCTTTCACCAACTaGCTTGTCTCCTCTGGGTTA +
Preference number: 2 (lower is better)
Translates to: DGSQTNPSATLFRQYMAACPFTN*LVSSGL
Trigger: TAACCCAGAGGAGACAAGTCAGTTGGTGAAAGGACA...TGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR TCA 90 bp CTGTCTGAAATTGCTATGGGATCCTGGGAGCTCATTGCAAGAATGAGTTCTAGTGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 2 (lower is better)
Translates to: LSEIAMGSWELIARMSSSDCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...ACTAGAACTCATTCTTGCAATGAGCTCCCAGGATCCCATAGCAATTTCAGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 90 bp ATGGCATTCACTTCTTACTTCTTTCGTTTTTCTCAACAATTGCTCTaGGCTCCTGTGAGGCGAGAAGGCACACTCGAAACCCAGTGCTCC +
Preference number: 2 (lower is better)
Translates to: MAFTSYFFRFSQQLL*APVRREGTLETQCS
Trigger: GGAGCACTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCAATTGTTGAGAAAAACGAAAGAAGTAAGAAGTGAATGCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR TCA 90 bp GATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGACAATACATGGCAGCAAAAGACAACAAGATTTaGTTTCACGGTCGCTCCAGC +
Preference number: 2 (lower is better)
Translates to: DGSQTNPSATLFRQYMAAKDNKI*FHGRSS
Trigger: GCTGGAGCGACCGTGAAATCAAATCTTGTTGTCTTT...TGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR GCA 90 bp TCTATTAGTTTCAGTGACTACAGAAGGAGTACTTGTGTGCTCCAGTTCCTCATCGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCAT +
Preference number: 2 (lower is better)
Translates to: SISFSDYRRSTCVLQFLIGRLQL*LSRVGH
Trigger: ATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCC...GATGAGGAACTGGAGCACACAAGTACTCCTTCTGTAGTCACTGAAACTAATAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 90 bp AACAGCATGGCATTCACTTCTTACTTCTTTCGTTTTTCTCAACAATaGCTCTTGGCTCCTGTGAGGCGAGAAGGCACACTCGAAACCCAG +
Preference number: 2 (lower is better)
Translates to: NSMAFTSYFFRFSQQ*LLAPVRREGTLETQ
Trigger: CTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCAATTGTTGAGAAAAACGAAAGAAGTAAGAAGTGAATGCCATGCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR CCA 90 bp GATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGACAATACATGGCAGCAAGAATAAAAGAGGAGTaGGGACTGATATGGGGATTT +
Preference number: 2 (lower is better)
Translates to: DGSQTNPSATLFRQYMAARIKEE*GLIWGF
Trigger: AAATCCCCATATCAGTCCCCACTCCTCTTTTATTCT...TGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR CCA 90 bp ACACCCACGTCAGTCCTGCTGAGGCATGCATTCTGCTTTTCAAAGGGCTTTAGCGGACTACATCATTTGTaGGGACTAAATATGTGCTTA +
Preference number: 2 (lower is better)
Translates to: TPTSVLLRHAFCFSKGFSGLHHL*GLNMCL
Trigger: TAAGCACATATTTAGTCCCCACAAATGATGTAGTCC...GCTAAAGCCCTTTGAAAAGCAGAATGCATGCCTCAGCAGGACTGACGTGGGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR GCA 90 bp GCTAGTAATTACTGTATCTGGAGTGTGCATTTGGGTGACCCTGTAACCAAGGCTTGGGGACTAAATATGTaGTTACAGCTCTTAGCAGAG +
Preference number: 2 (lower is better)
Translates to: ASNYCIWSVHLGDPVTKAWGLNM*LQLLAE
Trigger: CTCTGCTAAGAGCTGTAAGCACATATTTAGTCCCCA...AGCCTTGGTTACAGGGTCACCCAAATGCACACTCCAGATACAGTAATTACTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR CCA 90 bp TCAAGGACCAGGGCTCCTCTTAATGTTCTTCAGCAATGTTTAACACTTGTCTTTTATCGTGGTCCACAGTaGTATGGAGATCCCAGATTG +
Preference number: 2 (lower is better)
Translates to: SRTRAPLNVLQQCLTLVFYRGPQ*YGDPRL
Trigger: CAATCTGGGATCTCCATACCACTGTGGACCACGATA...AAAGACAAGTGTTAAACATTGCTGAAGAACATTAAGAGGAGCCCTGGTCCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR TCA 90 bp GCAGAGATATATGTAAACCTAGATGATTTTGAAGTCATTAACGTCAGGAACCTTACCTTCCCTGATCCCTaGAAGCAATCTGACAGAAAA +
Preference number: 2 (lower is better)
Translates to: AEIYVNLDDFEVINVRNLTFPDP*KQSDRK
Trigger: TTTTCTGTCAGATTGCTTTCAGGGATCAGGGAAGGT...AAGGTTCCTGACGTTAATGACTTCAAAATCATCTAGGTTTACATATATCTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR CCA 90 bp ATTCCCATGTCATACTCATTACAGGTCAATTTTCATTTGCAATCTGAAACACTGAAAACAGAGGCCCTTTaGTCTTGCAAACTTTCTATG +
Preference number: 2 (lower is better)
Translates to: IPMSYSLQVNFHLQSETLKTEAL*SCKLSM
Trigger: CATAGAAAGTTTGCAAGACCAAAGGGCCTCTGTTTT...CAGTGTTTCAGATTGCAAATGAAAATTGACCTGTAATGAGTATGACATGGGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR CAA 90 bp AAATGTAAGATTCCCATGTCATACTCATTACAGGTCAATTTTCATTaGCAATCTGAAACACTGAGAAGTGCACTGTTAGTAATCTGCAGA +
Preference number: 2 (lower is better)
Translates to: KCKIPMSYSLQVNFH*QSETLRSALLVICR
Trigger: TCTGCAGATTACTAACAGTGCACTTCTCAGTGTTTCAGATTGCAAATGAAAATTGACCTGTAATGAGTATGACATGGGAATCTTACATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR GCA 72 bp TCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCATTTGCAGGTTAAGCTG +
Preference number: 3 (lower is better)
Translates to: SQLQHGLGRLQL*LSRVGHLQVKL
Trigger: CAGCTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR TCA 72 bp AGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGCAGGTTAAGCTGCCAT +
Preference number: 3 (lower is better)
Translates to: SCSTAWGDCSFA*AEWAICRLSCH
Trigger: ATGGCAGCTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR GCA 72 bp TCAGCACTATCAGGAACCAGATCTTGGCGTCTTCCTTaGTCACTCCCAGTTGCAGCACGGCCTGGGGAGACT +
Preference number: 3 (lower is better)
Translates to: SALSGTRSWRLP*SLPVAARPGET
Trigger: AGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR-3UTR CAA 90 bp TCAGCACTATCAGGAACCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 3 (lower is better)
Translates to: SALSGTRSWRLPCSLPVAGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...TGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CCA 72 bp ACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTaGCCGGAATGTGATGGCGAAGGAAGCCAGTCTTCC +
Preference number: 3 (lower is better)
Translates to: TWAVSLQCERVR*PECDGEGSQSS
Trigger: GGAAGACTGGCTTCCTTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
3UTR-3UTR CAA 90 bp TCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCAGGAGTGGGAGGGTTCGTTTTTCTCAACAATaGCTCTTGGCTCCTGTGAGG +
Preference number: 3 (lower is better)
Translates to: SMPQYRGTSEPRSRSGRVRFSQQ*LLAPVR
Trigger: CCTCACAGGAGCCAAGAGCAATTGTTGAGAAAAACG...AACCCTCCCACTCCTGCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR TCA 72 bp ACACTGGAGCAGGAGCCTATGTGTCCTTTCACCAACTaGCTTGTCTCCTCTGGGTTATCGTGGTCCACAGTG +
Preference number: 3 (lower is better)
Translates to: TLEQEPMCPFTN*LVSSGLSWSTV
Trigger: CACTGTGGACCACGATAACCCAGAGGAGACAAGTCAGTTGGTGAAAGGACACATAGGCTCCTGCTCCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR GCA 72 bp GCTCCTGTGAGGCGAGAAGGCACACTCGAAACCCAGTaGTCCTATTGTGATCTCCCATCACTGCTATTTGTC +
Preference number: 3 (lower is better)
Translates to: APVRREGTLETQ*SYCDLPSLLFV
Trigger: GACAAATAGCAGTGATGGGAGATCACAATAGGAGCACTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR-3UTR CAA 90 bp CATACTCTGCTAGGGCACCATCATACCTTCTGCCTACAGACCTTCCCTGATCCCAGAGGCCCTTTGGTCTaGCAAACTTTCTATGCCCCA +
Preference number: 3 (lower is better)
Translates to: HTLLGHHHTFCLQTFPDPRGPLV*QTFYAP
Trigger: TGGGGCATAGAAAGTTTGCAAGACCAAAGGGCCTCT...GGGATCAGGGAAGGTCTGTAGGCAGAAGGTATGATGGTGCCCTAGCAGAGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR TCA 72 bp TCTTTTCCTCTCTCAGCAGTAGGAAGCCAGACGAACTaGGGACACTGGAGCAGGAGCCTATGTGTCCTTTCA +
Preference number: 3 (lower is better)
Translates to: SFPLSAVGSQTN*GHWSRSLCVLS
Trigger: TGAAAGGACACATAGGCTCCTGCTCCAGTGTCCTCAGTTCGTCTGGCTTCCTACTGCTGAGAGAGGAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 72 bp AAGAACGTGCACAGGGAGTGGAATAGGAATCAGAGTTaGCCTACGACTGCAGAGCAGGTATGTAGGGCACTC +
Preference number: 3 (lower is better)
Translates to: KNVHREWNRNQS*PTTAEQVCRAL
Trigger: GAGTGCCCTACATACCTGCTCTGCAGTCGTAGGTCAACTCTGATTCCTATTCCACTCCCTGTGCACGTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 72 bp TCTTTCGTTTTTCTCAACAATTGCTCTTGGCTCCTGTaGGGCGAGAAGGCACACTCGAAACCCAGTGCTCCT +
Preference number: 3 (lower is better)
Translates to: SFVFLNNCSWLL*GEKAHSKPSAP
Trigger: AGGAGCACTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCAATTGTTGAGAAAAACGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
3UTR CCA 72 bp AGACTAATCCCTCAGCAACGCTCTTTCGACAATACATaGCAGCAACATGCAGCCAATCCTGTAGCTAGCCCA +
Preference number: 3 (lower is better)
Translates to: RLIPQQRSFDNT*QQHAANPVASP
Trigger: TGGGCTAGCTACAGGATTGGCTGCATGTTGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR CAA 90 bp ACAGAAAAATGTAATGCCGTGTCTCCTAGAGGTGGTTCAAGGACCAGGGCTCCTCTTTCACCAACTGACTaGTCTCCTCTGGGTTATCGT +
Preference number: 3 (lower is better)
Translates to: TEKCNAVSPRGGSRTRAPLSPTD*SPLGYR
Trigger: ACGATAACCCAGAGGAGACAAGTCAGTTGGTGAAAG...AGGAGCCCTGGTCCTTGAACCACCTCTAGGAGACACGGCATTACATTTTTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR GCA 72 bp TCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTaGGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAA +
Preference number: 3 (lower is better)
Translates to: SSRKYTWAVSLQ*ERVRWPECDGE
Trigger: TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
3UTR CCA 72 bp TCTTCTAAATATTCAGCACTATCAGGAACCAGATCTTaGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGG +
Preference number: 3 (lower is better)
Translates to: SSKYSALSGTRS*RLPCSLPVAAR
Trigger: CCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGAATATTTAGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR-3UTR CAA 90 bp TCTATTAGTTTCAGTGACTACAGAAGGAGTACTTGTGTGCTCCAGTTCCTCATCAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTG +
Preference number: 3 (lower is better)
Translates to: SISFSDYRRSTCVLQFLIRLQLC*SRVGHL
Trigger: CAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCT...GATGAGGAACTGGAGCACACAAGTACTCCTTCTGTAGTCACTGAAACTAATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR TCA 72 bp TGTAGTTACTCTTCCAGTAAAACAGCATGTGCTGTCTaGAATTGCTATGGGATCCTGGGAGCTCATTGCAAG +
Preference number: 3 (lower is better)
Translates to: CSYSSSKTACAV*NCYGILGAHCK
Trigger: CTTGCAATGAGCTCCCAGGATCCCATAGCAATTTCAGACAGCACATGCTGTTTTACTGGAAGAGTAACTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CCA 72 bp TTTTCTCATACACCCCAAGCTAGTAATTACTGTATCTaGAGTGTGCATTTGGGTGACCCTGTAACCAAGGCT +
Preference number: 3 (lower is better)
Translates to: FSHTPQASNYCI*SVHLGDPVTKA
Trigger: AGCCTTGGTTACAGGGTCACCCAAATGCACACTCCAGATACAGTAATTACTAGCTTGGGGTGTATGAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR-3UTR CAA 90 bp ACAGGGAGTGGAATAGGAATCAGAGTTGACCTACGACTGCAGAGCAGGTATGTAATGGCTCAAACTATTTaGCAAAGAGCAGAAGACAAA +
Preference number: 3 (lower is better)
Translates to: TGSGIGIRVDLRLQSRYVMAQTI*QRAEDK
Trigger: TTTGTCTTCTGCTCTTTGCAAAATAGTTTGAGCCAT...TACATACCTGCTCTGCAGTCGTAGGTCAACTCTGATTCCTATTCCACTCCCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 72 bp ATCCATCTTCACCAAACACTTTACAGACATTTGTACTaGGAGTACAATTCCAGAACCACAGAGCTTACAAAC +
Preference number: 3 (lower is better)
Translates to: IHLHQTLYRHLY*EYNSRTTELTN
Trigger: GTTTGTAAGCTCTGTGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTTGGTGAAGATGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
3UTR TCA 72 bp AGCATAATCTTATCCGTTTGCAGCAAATACACAATCTaGAGCATTCAACCTCCCATAAAGGTATATCGCCTT +
Preference number: 3 (lower is better)
Translates to: SIILSVCSKYTI*SIQPPIKVYRL
Trigger: AAGGCGATATACCTTTATGGGAGGTTGAATGCTTCAGATTGTGTATTTGCTGCAAACGGATAAGATTATGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 72 bp CAGAAATCATTTGCTAAATTAGCAAACAGTAGGTGTTaGGCTTCCACACACCACAGAGACAAAATTACTGGT +
Preference number: 3 (lower is better)
Translates to: QKSFAKLANSRC*ASTHHRDKITG
Trigger: ACCAGTAATTTTGTCTCTGTGGTGTGTGGAAGCTCAACACCTACTGTTTGCTAATTTAGCAAATGATTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR GCA 72 bp TCTGCCTATAAGTTTCTATTGCCTATCACAGAGTTTTaGTCACCCTTGTGCCTTAAGCATTTTGAGAGTAAT +
Preference number: 3 (lower is better)
Translates to: SAYKFLLPITEF*SPLCLKHFESN
Trigger: ATTACTCTCAAAATGCTTAAGGCACAAGGGTGAGCAAAACTCTGTGATAGGCAATAGAAACTTATAGGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR TCA 72 bp AAATTGCTATGGGATCCTGGGAGCTCATTGCAAGAATaGGTTCTAGTTGATCATCTTTTTCAATATCATATA +
Preference number: 3 (lower is better)
Translates to: KLLWDPGSSLQE*VLVDHLFQYHI
Trigger: TATATGATATTGAAAAAGATGATCAACTAGAACTCATTCTTGCAATGAGCTCCCAGGATCCCATAGCAATTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR GCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAAGCACCGCTTTCTTCATaGTGGGGCTCTCGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGEAPLSS*WGSRAG
Trigger: TCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGC...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR GCA 90 bp GTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCATCTCTAGTTGCTGCTaGAGTGCTGCTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: VFLAHSQLQHGLGRLQLCISSCC*SAAGFT
Trigger: CGTGAAGCCAGCAGCACTGCAGCAGCAACTAGAGAT...GCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR CCA 90 bp CACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTGAGCAGAGTGCTGCTGCAGTGCTGCTaGCTTCACGTTGTGATACAC +
Preference number: 4 (lower is better)
Translates to: HSQLQHGLGRLQLCLSRVLLQCC*LHVVIH
Trigger: GTGTATCACAACGTGAAGCCAGCAGCACTGCAGCAG...CACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 72 bp GAACCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: EPDLGVFLAHSQ*QHGLGRLQLCL
Trigger: CAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR TCA 90 bp CACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTGAGCAGAGTGTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: HSQLQHGLGRLQLCLSRVFEESG*EVVGIS
Trigger: GGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAA...CACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR GCA 90 bp CCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGATTGCTGCTGCAGTGCTaGTGGCTTCACGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: PDLGVFLAHSQLQHGLGRLLLQC*WLHVVI
Trigger: TATCACAACGTGAAGCCAGCAGCACTGCAGCAGCAA...TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
3UTR CAA 72 bp TTCAGCACTATCAGGAACCAGATCTTGGCGTCTTCCTaGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: FSTIRNQILASS*LTPSCSTAWGD
Trigger: GTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR TCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAAGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGEDCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR GCA 90 bp TCAGCACTATCAGGAACCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACCGCTTTCTTCATaGTGGGGCTCTCGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SALSGTRSWRLPCSLPVAAPLSS*WGSRAG
Trigger: TCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGC...TGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGATAGTGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR GCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAAGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCAT +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGEGRLQL*LSRVGH
Trigger: ATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCC...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAATTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGEFEESG*EVVGIS
Trigger: GGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAA...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAACTTCCTCTTCTTCACTaGAACTGCTCTCGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGELPLLH*NCSRPS
Trigger: TGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAAG...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049388.9
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp TGGTCTTGCAAACTTTCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 4 (lower is better)
Translates to: WSCKLSMPQYRGTSEPRSDCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...GCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGAAAGTTTGCAAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR GCA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAATTGCTGCTGCAGTGCTaGTGGCTTCACGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: WAVSLQCERVRWPECDGELLLQC*WLHVVI
Trigger: TATCACAACGTGAAGCCAGCAGCACTGCAGCAGCAA...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR TCA 90 bp TCAGGAACCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGTCTCCAGAACCAGGTaGAGTTCTTGTTTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: SGTRSWRLPCSLPVAARPVSRTR*SSCFSR
Trigger: TCTAGAGAAACAAGAACTTCACCTGGTTCTGGAGAC...AGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGGTTCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR GCA 90 bp GCTAGTAATTACTGTATCTGGAGTGTGCATTTGGGTGACCCTGTAACCAAGGCTGCACCGCTTTCTTCATaGTGGGGCTCTCGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: ASNYCIWSVHLGDPVTKAAPLSS*WGSRAG
Trigger: TCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGC...AGCCTTGGTTACAGGGTCACCCAAATGCACACTCCAGATACAGTAATTACTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp TGGTCTTGCAAACTTTCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCCTTCCTCTTCTTCACTaGAACTGCTCTCGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: WSCKLSMPQYRGTSEPRSLPLLH*NCSRPS
Trigger: TGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAAG...GCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGAAAGTTTGCAAGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR GCA 90 bp ATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGGCACCGCTTTCTTCATaGTGGGGCTCTCGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: IVSPNPLENILGQSLFSAAPLSS*WGSRAG
Trigger: TCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGC...CGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR GCA 90 bp GTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGCACCGCTTTCTTCATaGTGGGGCTCTCGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: VSPNPLENILGQSLFSAKAPLSS*WGSRAG
Trigger: TCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGC...TTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR GCA 90 bp ACAGGGAGTGGAATAGGAATCAGAGTTGACCTACGACTGCAGAGCAGGTATGTAGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCAT +
Preference number: 4 (lower is better)
Translates to: TGSGIGIRVDLRLQSRYVGRLQL*LSRVGH
Trigger: ATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCC...TACATACCTGCTCTGCAGTCGTAGGTCAACTCTGATTCCTATTCCACTCCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR GCA 90 bp GGTGCTTCCTCCTTCCAAGAGGCAGGCGTTCTTCTAAATATTCAGCACTATCAGTGCCTTAGCCGTAGCTaGTGTGCAAAGCCAGTGAGC +
Preference number: 4 (lower is better)
Translates to: GASSFQEAGVLLNIQHYQCLSRS*CAKPVS
Trigger: GCTCACTGGCTTTGCACAGCAGCTACGGCTAAGGCA...CTGATAGTGCTGAATATTTAGAAGAACGCCTGCCTCTTGGAAGGAGGAAGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR CCA 90 bp GTCTTGCAAACTTTCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCAGCCAGCTGCGCTTGTATaGTCTCCAGCTTGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: VLQTFYAPVQGNVRAKKQPAALV*SPACCR
Trigger: TCTACAACAAGCTGGAGACCATACAAGCGCAGCTGG...CTGCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGAAAGTTTGCAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR TCA 90 bp ACAGAAAAATGTAATGCCGTGTCTCCTAGAGGTGGTTCAAGGACCAGGGCTCCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: TEKCNAVSPRGGSRTRAPFEESG*EVVGIS
Trigger: GGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAA...AGGAGCCCTGGTCCTTGAACCACCTCTAGGAGACACGGCATTACATTTTTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp AAGCAAAAGAACACTGCAGGACAAATGCCAAAACATTTGACGGCCTGCGGCTGCGCTGGCTTCACGTTGTaGTACACTGCCTGTTCCAAA +
Preference number: 4 (lower is better)
Translates to: KQKNTAGQMPKHLTACGCAGFTL*YTACSK
Trigger: TTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGC...GCAGCCGCAGGCCGTCAAATGTTTTGGCATTTGTCCTGCAGTGTTCTTTTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR TCA 90 bp GCTAGTAATTACTGTATCTGGAGTGTGCATTTGGGTGACCCTGTAACCAAGGCTGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 4 (lower is better)
Translates to: ASNYCIWSVHLGDPVTKADCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...AGCCTTGGTTACAGGGTCACCCAAATGCACACTCCAGATACAGTAATTACTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp GGTGCTTCCTCCTTCCAAGAGGCAGGCGTTCTTCTAAATATTCAGCACTATCAGCTTCCTCTTCTTCACTaGAACTGCTCTCGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: GASSFQEAGVLLNIQHYQLPLLH*NCSRPS
Trigger: TGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAAG...CTGATAGTGCTGAATATTTAGAAGAACGCCTGCCTCTTGGAAGGAGGAAGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR TCA 90 bp TCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 4 (lower is better)
Translates to: SPNPLENILGQSLFSAKEDCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...CTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR GCA 90 bp TCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCAT +
Preference number: 4 (lower is better)
Translates to: SPNPLENILGQSLFSAKEGRLQL*LSRVGH
Trigger: ATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCC...CTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp GTAAAACAGCATGTGCTGTCTGAAATTGCTATGGGATCCTGGGAGCTCATTGCAGCTGGCTTCACGTTGTaGTACACTGCCTGTTCCAAA +
Preference number: 4 (lower is better)
Translates to: VKQHVLSEIAMGSWELIAAGFTL*YTACSK
Trigger: TTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGC...TGCAATGAGCTCCCAGGATCCCATAGCAATTTCAGACAGCACATGCTGTTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR GCA 90 bp TCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGATCTCTAGTTGCTGCTaGAGTGCTGCTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: SPNPLENILGQSLFSAKEISSCC*SAAGFT
Trigger: CGTGAAGCCAGCAGCACTGCAGCAGCAACTAGAGAT...CTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR GCA 90 bp AGAGCTTACAAACAGCTTAACAGCAGATCAGCACTCAGAAAGGGCACAGTTAACATCTCTAGTTGCTGCTaGAGTGCTGCTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: RAYKQLNSRSALRKGTVNISSCC*SAAGFT
Trigger: CGTGAAGCCAGCAGCACTGCAGCAGCAACTAGAGAT...GTTAACTGTGCCCTTTCTGAGTGCTGATCTGCTGTTAAGCTGTTTGTAAGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR GCA 90 bp ACTGAGAGTACAATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCGGGAGACTGCAGCTTTaGTTGAGCAGAGTGGGCCAT +
Preference number: 4 (lower is better)
Translates to: TESTIPEPQSLQTELTNSGRLQL*LSRVGH
Trigger: ATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCC...GCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATTGTACTCTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CCA 90 bp ATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGCTGCTGCAGTGCTGCTaGCTTCACGTTGTGATACAC +
Preference number: 4 (lower is better)
Translates to: IVSPNPLENILGQSLFSALLQCC*LHVVIH
Trigger: GTGTATCACAACGTGAAGCCAGCAGCACTGCAGCAG...CGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR TCA 90 bp GTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAATTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: VSPNPLENILGQSLFSAKFEESG*EVVGIS
Trigger: GGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAA...TTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp ATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: IVSPNPLENILGQSLFSAFEESG*EVVGIS
Trigger: GGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAA...CGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp ATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCTTAACAGCAGATGACTGCAGCTTTGCTTaGGCAGAGTGGGCCATTTGC +
Preference number: 4 (lower is better)
Translates to: IPEPQSLQTELTNSLTADDCSFA*AEWAIC
Trigger: GCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTC...ATCTGCTGTTAAGCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR TCA 90 bp CTGAGAGTACAATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCTGCTGGCTTCACGTTGTaGTACACTGCCTGTTCCAAA +
Preference number: 4 (lower is better)
Translates to: LRVQFQNHRAYKQSLQTAAGFTL*YTACSK
Trigger: TTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGC...AGCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATTGTACTCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR GCA 90 bp AGCTTAACAGCAGATCAGCACTCAGAAAGGGCACAGTTAACTGGAATTCACTTTTTGCTGCTGCAGTGCTaGTGGCTTCACGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: SLTADQHSERAQLTGIHFLLLQC*WLHVVI
Trigger: TATCACAACGTGAAGCCAGCAGCACTGCAGCAGCAA...AAAGTGAATTCCAGTTAACTGTGCCCTTTCTGAGTGCTGATCTGCTGTTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR GCA 90 bp AGGGCTCCTCTTAATGTTCTTCAGCAATGTTTAACACTTGTCTTTTCCTCTCTCATCTCTAGTTGCTGCTaGAGTGCTGCTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: RAPLNVLQQCLTLVFSSLISSCC*SAAGFT
Trigger: CGTGAAGCCAGCAGCACTGCAGCAGCAACTAGAGAT...GAGAGAGGAAAAGACAAGTGTTAAACATTGCTGAAGAACATTAAGAGGAGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR GCA 90 bp TCTATTAGTTTCAGTGACTACAGAAGGAGTACTTGTGTGCTCCAGTTCCTCATCCTGGTAACGGAATGCTaGATCCCGCACACTGTAAGA +
Preference number: 4 (lower is better)
Translates to: SISFSDYRRSTCVLQFLILVTEC*IPHTVR
Trigger: TCTTACAGTGTGCGGGATGCAGCATTCCGTTACCAG...GATGAGGAACTGGAGCACACAAGTACTCCTTCTGTAGTCACTGAAACTAATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR CCA 90 bp AATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCTTAACAGCAGACTGCTGCAGTGCTGCTaGCTTCACGTTGTGATACAC +
Preference number: 4 (lower is better)
Translates to: NSRTTELTNRAYKQLNSRLLQCC*LHVVIH
Trigger: GTGTATCACAACGTGAAGCCAGCAGCACTGCAGCAG...TCTGCTGTTAAGCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CCA 90 bp ACAGAGCTTACAAACAGCTTAACAGCAGATCAGCACTCAGAAAGGGCACAGTTAACAGGTCACATGCACTaGCAGCTGTTATGTTCGCTA +
Preference number: 4 (lower is better)
Translates to: TELTNSLTADQHSERAQLTGHMH*QLLCSL
Trigger: TAGCGAACATAACAGCTGCCAGTGCATGTGACCTGT...TAACTGTGCCCTTTCTGAGTGCTGATCTGCTGTTAAGCTGTTTGTAAGCTCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR TCA 90 bp AGGGCTCCTCTTAATGTTCTTCAGCAATGTTTAACACTTGTCTTTTCCTCTCTCCTTCCTCTTCTTCACTaGAACTGCTCTCGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: RAPLNVLQQCLTLVFSSLLPLLH*NCSRPS
Trigger: TGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAAG...GAGAGAGGAAAAGACAAGTGTTAAACATTGCTGAAGAACATTAAGAGGAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp GTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGTCTCCAGAACCAGGTaGAGTTCTTGTTTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: VSPNPLENILGQSLFSAKVSRTR*SSCFSR
Trigger: TCTAGAGAAACAAGAACTTCACCTGGTTCTGGAGAC...TTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049388.9
ENSMUST00000234280.2
CDS-3UTR TCA 90 bp AGTACAATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCTTAACACTTCCTCTTCTTCACTaGAACTGCTCTCGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: STIPEPQSLQTELTNSLTLPLLH*NCSRPS
Trigger: TGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAAG...TGTTAAGCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATTGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR GCA 90 bp TCTTCACCAAACACTTTACAGACATTTGTACTGAGAGTACAATTCCAGAACCACCGGACACAGGTCACATaGACTGGCAGCTGTTATGTT +
Preference number: 4 (lower is better)
Translates to: SSPNTLQTFVLRVQFQNHRTQVT*TGSCYV
Trigger: AACATAACAGCTGCCAGTGCATGTGACCTGTGTCCG...GTGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTTGGTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR TCA 90 bp ACCAAACACTTTACAGACATTTGTACTGAGAGTACAATTCCAGAACCACAGAGCGTCTCCAGAACCAGGTaGAGTTCTTGTTTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: TKHFTDICTESTIPEPQSVSRTR*SSCFSR
Trigger: TCTAGAGAAACAAGAACTTCACCTGGTTCTGGAGAC...GCTCTGTGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CCA 90 bp GATATGGGGATTTTGTTAATGCTCCACTGTGTAAGTAATGATAAGAATCTCCTACTGCTGCAGTGCTGCTaGCTTCACGTTGTGATACAC +
Preference number: 4 (lower is better)
Translates to: DMGILLMLHCVSNDKNLLLLQCC*LHVVIH
Trigger: GTGTATCACAACGTGAAGCCAGCAGCACTGCAGCAG...TAGGAGATTCTTATCATTACTTACACAGTGGAGCATTAACAAAATCCCCATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp GATATGGGGATTTTGTTAATGCTCCACTGTGTAAGTAATGATAAGAATCTCCTAGCTGGCTTCACGTTGTaGTACACTGCCTGTTCCAAA +
Preference number: 4 (lower is better)
Translates to: DMGILLMLHCVSNDKNLLAGFTL*YTACSK
Trigger: TTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGC...TAGGAGATTCTTATCATTACTTACACAGTGGAGCATTAACAAAATCCCCATATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR GCA 90 bp ACTGATATGGGGATTTTGTTAATGCTCCACTGTGTAAGTAATGATAAGAATCTCTTGCTGCTGCAGTGCTaGTGGCTTCACGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: TDMGILLMLHCVSNDKNLLLLQC*WLHVVI
Trigger: TATCACAACGTGAAGCCAGCAGCACTGCAGCAGCAA...GAGATTCTTATCATTACTTACACAGTGGAGCATTAACAAAATCCCCATATCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR TCA 90 bp GCAGAGATATATGTAAACCTAGATGATTTTGAAGTCATTAACGTCAGGAACCTTGTCTCCAGAACCAGGTaGAGTTCTTGTTTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: AEIYVNLDDFEVINVRNLVSRTR*SSCFSR
Trigger: TCTAGAGAAACAAGAACTTCACCTGGTTCTGGAGAC...AAGGTTCCTGACGTTAATGACTTCAAAATCATCTAGGTTTACATATATCTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR TCA 90 bp ACTGATATGGGGATTTTGTTAATGCTCCACTGTGTAAGTAATGATAAGAATCTCGTCTCCAGAACCAGGTaGAGTTCTTGTTTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: TDMGILLMLHCVSNDKNLVSRTR*SSCFSR
Trigger: TCTAGAGAAACAAGAACTTCACCTGGTTCTGGAGAC...GAGATTCTTATCATTACTTACACAGTGGAGCATTAACAAAATCCCCATATCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
3UTR CAA 72 bp ATTCCCATGTCATACTCATTACAGGTCAATTTTCATTaGCAATCTGAAACACTGAGAAGTGCACTGTTAGTA +
Preference number: 4 (lower is better)
Translates to: IPMSYSLQVNFH*QSETLRSALLV
Trigger: TACTAACAGTGCACTTCTCAGTGTTTCAGATTGCAAATGAAAATTGACCTGTAATGAGTATGACATGGGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR CAA 90 bp CCAGATCTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGAATCTCCCCGTGTCTATaGCATTTATCAGCGGCACCG +
Preference number: 5 (lower is better)
Translates to: PDLGVFLAHSQLQHGLGRISPCL*HLSAAP
Trigger: CGGTGCCGCTGATAAATGCAATAGACACGGGGAGAT...TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGATCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS-3UTR CAA 90 bp TATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: YTWAVSLQCERVRWPECDLAHSQ*QHGLGR
Trigger: TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG...ATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS GCA 90 bp TTGAAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTATTaGATTTATCAGCGGCACCGCTTTCTTCATGCTGGGGCTCTCGGG +
Preference number: 5 (lower is better)
Translates to: LKNPAEKSWESPRVY*IYQRHRFLHAGALG
Trigger: CCCGAGAGCCCCAGCATGAAGAAAGCGGTGCCGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234701.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS-3UTR CAA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAAATCTCCCCGTGTCTATaGCATTTATCAGCGGCACCG +
Preference number: 5 (lower is better)
Translates to: WAVSLQCERVRWPECDGEISPCL*HLSAAP
Trigger: CGGTGCCGCTGATAAATGCAATAGACACGGGGAGAT...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp TATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 5 (lower is better)
Translates to: YTWAVSLQCERVRWPECDGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...ATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGTATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp ACAGGGAGTGGAATAGGAATCAGAGTTGACCTACGACTGCAGAGCAGGTATGTACTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: TGSGIGIRVDLRLQSRYVLAHSQ*QHGLGR
Trigger: TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG...TACATACCTGCTCTGCAGTCGTAGGTCAACTCTGATTCCTATTCCACTCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS CCA 90 bp CTCGGCCTTCAGGTGGAGCTTTTGAAGAATCCGGCTGAGAAGTCGTaGGAATCTCCCCGTGTCTATTGCATTTATCAGCGGCACCGCTTT +
Preference number: 5 (lower is better)
Translates to: LGLQVELLKNPAEKS*ESPRVYCIYQRHRF
Trigger: AAAGCGGTGCCGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS-3UTR CAA 90 bp CTTGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGACTGCAGCCAAAACAAATGATATaGTCTCCAGAACCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: LGVFLAHSQLQHGLGRLQPKQMI*SPEPGE
Trigger: TTCACCTGGTTCTGGAGACAATATCATTTGTTTTGG...CTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS TCA 90 bp GCCGACCAAGCACTGGCAAAGGCTTCCGCTTTGTCTTTCCTAAGATaGATCATCTCTAGTTGCTGCTGCAGTGCTGCTGGCTTCACGTTG +
Preference number: 5 (lower is better)
Translates to: ADQALAKASALSFLR*IISSCCCSAAGFTL
Trigger: CAACGTGAAGCCAGCAGCACTGCAGCAGCAACTAGAGATGATTCATCTTAGGAAAGACAAAGCGGAAGCCTTTGCCAGTGCTTGGTCGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234701.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS GCA 90 bp CGGTCCCATTTCAAAACACCAGCTAGTCAGCTGGTAACGGAATGCTaGATCCCGCACACTGTAAGAATTGTAGCAGTGCTTGTGAGGGCC +
Preference number: 5 (lower is better)
Translates to: RSHFKTPASQLVTEC*IPHTVRIVAVLVRA
Trigger: GGCCCTCACAAGCACTGCTACAATTCTTACAGTGTGCGGGATGCAGCATTCCGTTACCAGCTGACTAGCTGGTGTTTTGAAATGGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS CCA 90 bp CACTGCCTTCAGGTGGAGCTTTTGAAGAATCCGGCTGAGAAGTCGTaGGAATCTCCCCGTGTCTATTGCATTTATCAGCGGCACCGCTTT +
Preference number: 5 (lower is better)
Translates to: HCLQVELLKNPAEKS*ESPRVYCIYQRHRF
Trigger: AAAGCGGTGCCGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234701.2
CDS-3UTR CAA 90 bp GTCTTGCAAACTTTCTATGCCCCAGTACAGGGGAACGTCAGAGCCAAGAAGCAGAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTG +
Preference number: 5 (lower is better)
Translates to: VLQTFYAPVQGNVRAKKQRLQLC*SRVGHL
Trigger: CAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCT...CTGCTTCTTGGCTCTGACGTTCCCCTGTACTGGGGCATAGAAAGTTTGCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR CAA 90 bp GCTAGTAATTACTGTATCTGGAGTGTGCATTTGGGTGACCCTGTAACCAAGGCTGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 5 (lower is better)
Translates to: ASNYCIWSVHLGDPVTKAGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...AGCCTTGGTTACAGGGTCACCCAAATGCACACTCCAGATACAGTAATTACTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR CAA 90 bp ATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: IVSPNPLENILGQSLFSALAHSQ*QHGLGR
Trigger: TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG...CGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp GTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAACTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: VSPNPLENILGQSLFSAKLAHSQ*QHGLGR
Trigger: TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG...TTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp GCAAAAGAACACTGCAGGACAAATGCCAAAACATTTGACGGCCTGCGGCTGCTTGGAGTCCAGCTGCGCTaGTATGGTCTCCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: AKEHCRTNAKTFDGLRLLGVQLR*YGLQLV
Trigger: AACAAGCTGGAGACCATACAAGCGCAGCTGGACTCC...AAGCAGCCGCAGGCCGTCAAATGTTTTGGCATTTGTCCTGCAGTGTTCTTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS TCA 90 bp TCCTCTTCTTCACTGAAACTGCTCTCGGCCTTCAGGTGGAGCTTTTaGAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTATT +
Preference number: 5 (lower is better)
Translates to: SSSSLKLLSAFRWSF*RIRLRSRGNLPVSI
Trigger: AATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS TCA 90 bp AGGTTAAGCTGCCATCCCACTGTCTCTAGCTTCAGGTGGAGCTTTTaGAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTATT +
Preference number: 5 (lower is better)
Translates to: RLSCHPTVSSFRWSF*RIRLRSRGNLPVSI
Trigger: AATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGCTAGAGACAGTGGGATGGCAGCTTAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234085.2
CDS CCA 90 bp AACTACGTTTTTGAGAGTCAGTGTCTGTTATCCAAAGAAGTCTCTTaGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACGGCCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: NYVFESQCLLSKEVS*RLPCSLPVAARPGE
Trigger: CTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAGACTTCTTTGGATAACAGACACTGACTCTCAAAAACGTAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR CAA 90 bp GATGGGAGTCAGACTAATCCCTCAGCAACGCTCTTTCGACAATACATGGCAGCAATCTCCCCGTGTCTATaGCATTTATCAGCGGCACCG +
Preference number: 5 (lower is better)
Translates to: DGSQTNPSATLFRQYMAAISPCL*HLSAAP
Trigger: CGGTGCCGCTGATAAATGCAATAGACACGGGGAGAT...TGCTGCCATGTATTGTCGAAAGAGCGTTGCTGAGGGATTAGTCTGACTCCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR CAA 90 bp TATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTG +
Preference number: 5 (lower is better)
Translates to: YTWAVSLQCERVRWPECDRLQLC*SRVGHL
Trigger: CAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCT...ATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCAAGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp TCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 5 (lower is better)
Translates to: SPNPLENILGQSLFSAKEGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...CTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp GTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 5 (lower is better)
Translates to: VTESSRKYTWAVSLQCERGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...TCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp ACTGAGAGTACAATTCCAGAACCACAGAGCTTACAAACAGAGCTTACAAACAGCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: TESTIPEPQSLQTELTNSLAHSQ*QHGLGR
Trigger: TCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAG...GCTGTTTGTAAGCTCTGTTTGTAAGCTCTGTGGTTCTGGAATTGTACTCTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS TCA 90 bp CGTTGTGATACACTGCCTTCAGGTGGAGCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCCCCGTGTCTATTGCATTTATCAGCG +
Preference number: 5 (lower is better)
Translates to: RCDTLPSGGAFEESG*EVVGISPCLLHLSA
Trigger: CGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCAGTGTATCACAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234701.2
CDS TCA 90 bp ATCCCACTGTCTCTAGCTTCAGGTGGAGCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCCCCGTGTCTATTGCATTTATCAGCG +
Preference number: 5 (lower is better)
Translates to: IPLSLASGGAFEESG*EVVGISPCLLHLSA
Trigger: CGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGCTAGAGACAGTGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234085.2
CDS-3UTR CAA 90 bp ATTGCTCTTGGCTCCTGTGAGGCGAGAAGGCACACTCGAAACCCAGTGCTCCTACCAAAACAAATGATATaGTCTCCAGAACCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: IALGSCEARRHTRNPVLLPKQMI*SPEPGE
Trigger: TTCACCTGGTTCTGGAGACAATATCATTTGTTTTGG...TAGGAGCACTGGGTTTCGAGTGTGCCTTCTCGCCTCACAGGAGCCAAGAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049388.9
CDS-3UTR CAA 90 bp TGGGCAGTCTCTCTTCAGTGCGAAAGAGTGAGGTGGCCGGAATGTGATGGCGAACCAAAACAAATGATATaGTCTCCAGAACCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: WAVSLQCERVRWPECDGEPKQMI*SPEPGE
Trigger: TTCACCTGGTTCTGGAGACAATATCATTTGTTTTGG...TTCGCCATCACATTCCGGCCACCTCACTCTTTCGCACTGAAGAGAGACTGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049388.9
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp TCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGAAAGAGGGAGTCCAGCTGCGCTaGTATGGTCTCCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: SPNPLENILGQSLFSAKEGVQLR*YGLQLV
Trigger: AACAAGCTGGAGACCATACAAGCGCAGCTGGACTCC...CTCTTTCGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp ATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGATCTCCCCGTGTCTATaGCATTTATCAGCGGCACCG +
Preference number: 5 (lower is better)
Translates to: IVSPNPLENILGQSLFSAISPCL*HLSAAP
Trigger: CGGTGCCGCTGATAAATGCAATAGACACGGGGAGAT...CGCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp AATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCGGAGTCCAGCTGCGCTaGTATGGTCTCCAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: NSVTESSRKYTWAVSLQCGVQLR*YGLQLV
Trigger: AACAAGCTGGAGACCATACAAGCGCAGCTGGACTCC...GCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS TCA 90 bp GTATGGTCTCCAGCTTGTTGTAGAAATCGAACAGCTCCTTGTGATTaGATTCCACGAGAACTTTCTCCACGTTCTTGGCGTCTTCCTTGC +
Preference number: 5 (lower is better)
Translates to: VWSPACCRNRTAPCD*IPRELSPRSWRLPC
Trigger: GCAAGGAAGACGCCAAGAACGTGGAGAAAGTTCTCGTGGAATTCAATCACAAGGAGCTGTTCGATTTCTACAACAAGCTGGAGACCATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS-3UTR CAA 90 bp AATAGTGTCACCGAATCCTCTAGAAAATATACTTGGGCAGTCTCTCTTCAGTGCATCTCCCCGTGTCTATaGCATTTATCAGCGGCACCG +
Preference number: 5 (lower is better)
Translates to: NSVTESSRKYTWAVSLQCISPCL*HLSAAP
Trigger: CGGTGCCGCTGATAAATGCAATAGACACGGGGAGAT...GCACTGAAGAGAGACTGCCCAAGTATATTTTCTAGAGGATTCGGTGACACTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
CDS-3UTR CAA 90 bp ATCTTCACCAAACACTTTACAGACATTTGTACTGAGAGTACAATTCCAGAACCAGGGGAGACTGCAGCTTaGCTTGAGCAGAGTGGGCCA +
Preference number: 5 (lower is better)
Translates to: IFTKHFTDICTESTIPEPGETAA*LEQSGP
Trigger: TGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCC...TGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTTGGTGAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CAA 90 bp ACAGAAAAATGTAATGCCGTGTCTCCTAGAGGTGGTTCAAGGACCAGGGCTCCTGAACAAACTACGTTTTaGAGAGTCAGTGTCTGTTAT +
Preference number: 5 (lower is better)
Translates to: TEKCNAVSPRGGSRTRAPEQTTF*RVSVCY
Trigger: ATAACAGACACTGACTCTCAAAAACGTAGTTTGTTC...AGGAGCCCTGGTCCTTGAACCACCTCTAGGAGACACGGCATTACATTTTTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR CAA 90 bp AAACACTTTACAGACATTTGTACTGAGAGTACAATTCCAGAACCACAGAGCTTAAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTG +
Preference number: 5 (lower is better)
Translates to: KHFTDICTESTIPEPQSLRLQLC*SRVGHL
Trigger: CAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCT...TAAGCTCTGTGGTTCTGGAATTGTACTCTCAGTACAAATGTCTGTAAAGTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CAA 90 bp AGAGCTTACAAACAGCTTAACAGCAGATCAGCACTCAGAAAGGGCACAGTTAACCCAAAACAAATGATATaGTCTCCAGAACCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: RAYKQLNSRSALRKGTVNPKQMI*SPEPGE
Trigger: TTCACCTGGTTCTGGAGACAATATCATTTGTTTTGG...GTTAACTGTGCCCTTTCTGAGTGCTGATCTGCTGTTAAGCTGTTTGTAAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS-3UTR CAA 90 bp ACTGATATGGGGATTTTGTTAATGCTCCACTGTGTAAGTAATGATAAGAATCTCAGACTGCAGCTTTGCTaGAGCAGAGTGGGCCATTTG +
Preference number: 5 (lower is better)
Translates to: TDMGILLMLHCVSNDKNLRLQLC*SRVGHL
Trigger: CAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCT...GAGATTCTTATCATTACTTACACAGTGGAGCATTAACAAAATCCCCATATCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS-3UTR CAA 90 bp TCAAGGACCAGGGCTCCTCTTAATGTTCTTCAGCAATGTTTAACACTTGTCTTTCCAAAACAAATGATATaGTCTCCAGAACCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: SRTRAPLNVLQQCLTLVFPKQMI*SPEPGE
Trigger: TTCACCTGGTTCTGGAGACAATATCATTTGTTTTGG...AAAGACAAGTGTTAAACATTGCTGAAGAACATTAAGAGGAGCCCTGGTCCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS CAA 72 bp CTCCACGTTCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTG +
Preference number: 6 (lower is better)
Translates to: LHVLGVFLAHSQ*QHGLGRLQLCL
Trigger: CAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS GCA 72 bp CCACGAGAACTTTCTCCACGTTCTTGGCGTCTTCCTTaGTCACTCCCAGTTGCAGCACGGCCTGGGGAGACT +
Preference number: 6 (lower is better)
Translates to: PRELSPRSWRLP*SLPVAARPGET
Trigger: AGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACGTGGAGAAAGTTCTCGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS CAA 72 bp TCCACGAGAACTTTCTCCACGTTCTTGGCGTCTTCCTaGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGAC +
Preference number: 6 (lower is better)
Translates to: STRTFSTFLASS*LTPSCSTAWGD
Trigger: GTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACGTGGAGAAAGTTCTCGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS CAA 90 bp GAGAACTTTCTCCACGTTCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTGAGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: ENFLHVLGVFLAHSQ*QHGLGRLQLCLSRV
Trigger: CACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACGTGGAGAAAGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS CAA 72 bp AAGAAGTCTCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTG +
Preference number: 6 (lower is better)
Translates to: KKSLGVFLAHSQ*QHGLGRLQLCL
Trigger: CAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAGACTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS CAA 72 bp GCTGTTATGTTCGCTAAGCAGTTCTTGGCGTCTTCCTaGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGAC +
Preference number: 6 (lower is better)
Translates to: AVMFAKQFLASS*LTPSCSTAWGD
Trigger: GTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACTGCTTAGCGAACATAACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS GCA 72 bp CCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTATTaGATTTATCAGCGGCACCGCTTTCTTCATGCTGGG +
Preference number: 6 (lower is better)
Translates to: PAEKSWESPRVY*IYQRHRFLHAG
Trigger: CCCAGCATGAAGAAAGCGGTGCCGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234701.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS GCA 72 bp CTGTTATGTTCGCTAAGCAGTTCTTGGCGTCTTCCTTaGTCACTCCCAGTTGCAGCACGGCCTGGGGAGACT +
Preference number: 6 (lower is better)
Translates to: LLCSLSSSWRLP*SLPVAARPGET
Trigger: AGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACTGCTTAGCGAACATAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS CAA 72 bp GTGTCTGTTATCCAAAGAAGTCTCTTGGCGTCTTCCTaGCTCACTCCCAGTTGCAGCACGGCCTGGGGAGAC +
Preference number: 6 (lower is better)
Translates to: VSVIQRSLLASS*LTPSCSTAWGD
Trigger: GTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAGACTTCTTTGGATAACAGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS CAA 90 bp TGTTATCCAAAGAAGTCTCTTGGCGTCTTCCTTGCTCACTCCCAGTaGCAGCACGGCCTGGGGAGACTGCAGCTTTGCTTGAGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: CYPKKSLGVFLAHSQ*QHGLGRLQLCLSRV
Trigger: CACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAGACTTCTTTGGATAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS TCA 72 bp TCACTGAAACTGCTCTCGGCCTTCAGGTGGAGCTTTTaGAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCC +
Preference number: 6 (lower is better)
Translates to: SLKLLSAFRWSF*RIRLRSRGNLP
Trigger: GGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGAGCAGTTTCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS TCA 72 bp TGCAGGTTAAGCTGCCATCCCACTGTCTCTAGCTTGTaGGGGCCCAGGATTCTCTGGCGGAACTTCTCAACT +
Preference number: 6 (lower is better)
Translates to: CRLSCHPTVSSL*GPRILWRNFST
Trigger: AGTTGAGAAGTTCCGCCAGAGAATCCTGGGCCCTCACAAGCTAGAGACAGTGGGATGGCAGCTTAACCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234701.2
ENSMUST00000234961.2
CDS GCA 72 bp TGTCTGTTATCCAAAGAAGTCTCTTGGCGTCTTCCTTaGTCACTCCCAGTTGCAGCACGGCCTGGGGAGACT +
Preference number: 6 (lower is better)
Translates to: CLLSKEVSWRLP*SLPVAARPGET
Trigger: AGTCTCCCCAGGCCGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAGACTTCTTTGGATAACAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234124.2
CDS CAA 72 bp CATGCACTGGCAGCTGTTATGTTCGCTAAGCAGTTCTaGGCGTCTTCCTTGCTCACTCCCAGTTGCAGCACG +
Preference number: 6 (lower is better)
Translates to: HALAAVMFAKQF*ASSLLTPSCST
Trigger: CGTGCTGCAACTGGGAGTGAGCAAGGAAGACGCCAAGAACTGCTTAGCGAACATAACAGCTGCCAGTGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234961.2
CDS TCA 72 bp TCTCGGCCTTCAGGTGGAGCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCCCCGTGTCTATTGCAT +
Preference number: 6 (lower is better)
Translates to: SRPSGGAFEESG*EVVGISPCLLH
Trigger: ATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS CAA 72 bp TTCACTGAAACTGCTCTCGGCCTTCAGGTGGAGCTTTaGAAGAATCCGGCTGAGAAGTCGTGGGAATCTCCC +
Preference number: 6 (lower is better)
Translates to: FTETALGLQVEL*KNPAEKSWESP
Trigger: GGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGAGCAGTTTCAGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS CAA 90 bp TGCTGCTGGCTTCACGTTGTGATACACTGCCTTCAGGTGGAGCTTTaGAAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTAT +
Preference number: 6 (lower is better)
Translates to: CCWLHVVIHCLQVEL*KNPAEKSWESPRVY
Trigger: ATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCAGTGTATCACAACGTGAAGCCAGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234701.2
CDS CAA 90 bp TTCCTCTTCTTCACTGAAACTGCTCTCGGCCTTCAGGTGGAGCTTTaGAAGAATCCGGCTGAGAAGTCGTGGGAATCTCCCCGTGTCTAT +
Preference number: 6 (lower is better)
Translates to: FLFFTETALGLQVEL*KNPAEKSWESPRVY
Trigger: ATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGAGCAGTTTCAGTGAAGAAGAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS TCA 72 bp GCACTGGCAAAGGCTTCCGCTTTGTCTTTCCTAAGATaGATCATCTCTAGTTGCTGCTGCAGTGCTGCTGGC +
Preference number: 6 (lower is better)
Translates to: ALAKASALSFLR*IISSCCCSAAG
Trigger: GCCAGCAGCACTGCAGCAGCAACTAGAGATGATTCATCTTAGGAAAGACAAAGCGGAAGCCTTTGCCAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234701.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS TCA 72 bp ACACTGCCTTCAGGTGGAGCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCCCCGTGTCTATTGCAT +
Preference number: 6 (lower is better)
Translates to: TLPSGGAFEESG*EVVGISPCLLH
Trigger: ATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234701.2
CDS CCA 72 bp CAGGTGGAGCTTTTGAAGAATCCGGCTGAGAAGTCGTaGGAATCTCCCCGTGTCTATTGCATTTATCAGCGG +
Preference number: 6 (lower is better)
Translates to: QVELLKNPAEKS*ESPRVYCIYQR
Trigger: CCGCTGATAAATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234124.2
ENSMUST00000234280.2
ENSMUST00000234701.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS CAA 72 bp CTTCACGTTGTGATACACTGCCTTCAGGTGGAGCTTTaGAAGAATCCGGCTGAGAAGTCGTGGGAATCTCCC +
Preference number: 6 (lower is better)
Translates to: LHVVIHCLQVEL*KNPAEKSWESP
Trigger: GGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCAGTGTATCACAACGTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234701.2
CDS TCA 72 bp TCTCTAGCTTCAGGTGGAGCTTTTGAAGAATCCGGCTaGGAAGTCGTGGGAATCTCCCCGTGTCTATTGCAT +
Preference number: 6 (lower is better)
Translates to: SLASGGAFEESG*EVVGISPCLLH
Trigger: ATGCAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGCTAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234085.2
CDS GCA 72 bp TTCAAAACACCAGCTAGTCAGCTGGTAACGGAATGCTaGATCCCGCACACTGTAAGAATTGTAGCAGTGCTT +
Preference number: 6 (lower is better)
Translates to: FKTPASQLVTEC*IPHTVRIVAVL
Trigger: AAGCACTGCTACAATTCTTACAGTGTGCGGGATGCAGCATTCCGTTACCAGCTGACTAGCTGGTGTTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234944.2
CDS TCA 72 bp TCTAGTTGCTGCTGCAGTGCTGCTGGCTTCACGTTGTaGTACACTGCCTGTTCCAAAACAAATGATATTGTC +
Preference number: 6 (lower is better)
Translates to: SSCCCSAAGFTL*YTACSKTNDIV
Trigger: GACAATATCATTTGTTTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGCAGCACTGCAGCAGCAACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS TCA 72 bp CCAGCTTGTTGTAGAAATCGAACAGCTCCTTGTGATTaGATTCCACGAGAACTTTCTCCACGTTCTTGGCGT +
Preference number: 6 (lower is better)
Translates to: PACCRNRTAPCD*IPRELSPRSWR
Trigger: ACGCCAAGAACGTGGAGAAAGTTCTCGTGGAATTCAATCACAAGGAGCTGTTCGATTTCTACAACAAGCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234085.2
ENSMUST00000234280.2
ENSMUST00000234701.2
CDS CAA 72 bp CGTTGTGATACACTGCCTGTTCCAAAACAAATGATATaGTCTCCAGAACCAGGTGAAGTTCTTGTTTCTCTA +
Preference number: 6 (lower is better)
Translates to: RCDTLPVPKQMI*SPEPGEVLVSL
Trigger: TAGAGAAACAAGAACTTCACCTGGTTCTGGAGACAATATCATTTGTTTTGGAACAGGCAGTGTATCACAACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049388.9
ENSMUST00000234124.2
ENSMUST00000234944.2
ENSMUST00000234961.2
CDS CAA 72 bp ATCCCACTGTCTCTAGCTGTTCCAAAACAAATGATATaGTCTCCAGAACCAGGTGAAGTTCTTGTTTCTCTA +
Preference number: 6 (lower is better)
Translates to: IPLSLAVPKQMI*SPEPGEVLVSL
Trigger: TAGAGAAACAAGAACTTCACCTGGTTCTGGAGACAATATCATTTGTTTTGGAACAGCTAGAGACAGTGGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234280.2