RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL9A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027570

Ensembl transcript IDs: ENSMUST00000103059.2, ENSMUST00000132527.9

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAATCTTaGAGATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGC +
Preference number: 1 (lower is better)
Translates to: PSLRPVSEVLGCHKS*RWDSDSAANRCSWG
Trigger: GCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR CCA 90 bp CTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATaGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCA +
Preference number: 1 (lower is better)
Translates to: LRPVSEVLGCHKSWR*DSDSAANRCSWGQA
Trigger: TGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR GCA 90 bp ATTTCTGTCCATAGCCACACCGCTCATCCCTGCTGCCTGCTGGAGTaGTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACTGAA +
Preference number: 1 (lower is better)
Translates to: ISVHSHTAHPCCLLE*SRISVGNMEPFPTE
Trigger: TTCAGTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATGAGCGGTGTGGCTATGGACAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR GCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTaGCATAAATCTTGGAGATGGGACAGTGACAGTGCTGCCAATAGA +
Preference number: 1 (lower is better)
Translates to: GLKSPSLRPVSEVLG*HKSWRWDSDSAANR
Trigger: TCTATTGGCAGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR GCA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACACCGCTCATCCCTGCTaGCTGCTGGAGTGCTCTCGT +
Preference number: 2 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDTAHPC*LLECSR
Trigger: ACGAGAGCACTCCAGCAGGCAGCAGGGATGAGCGGT...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR CCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACAATCCCTGCTGCCTGCTaGAGTGCTCTCGTATTTCAG +
Preference number: 2 (lower is better)
Translates to: GHEGPTVASHCPFLSIATIPAAC*SALVFQ
Trigger: CTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGAT...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR CAA 90 bp ATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATaGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGCTGCC +
Preference number: 2 (lower is better)
Translates to: MLGLKSPSLRPVSEV*GCHKSWRWDSDSAA
Trigger: GGCAGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACCCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR CCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAAGCCAATAGATGTTCTTaGGGCCAAGCAGCAGGCCAT +
Preference number: 2 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKANRCS*GQAAGH
Trigger: ATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGC...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR TCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCCAAGCAGCAGGCCATaGAGGACCAACTGTAGCCAG +
Preference number: 2 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVPSSRP*RTNCSQ
Trigger: CTGGCTACAGTTGGTCCTTCATGGCCTGCTGCTTGG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGATCCCTGCTGCCTGCTaGAGTGCTCTCGTATTTCAG +
Preference number: 2 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVIPAAC*SALVFQ
Trigger: CTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGAT...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGCCAATAGATGTTCTTaGGGCCAAGCAGCAGGCCAT +
Preference number: 2 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVANRCS*GQAAGH
Trigger: ATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR GCA 72 bp CATAGCCACACCGCTCATCCCTGCTGCCTGCTGGAGTaGTCTCGTATTTCAGTAGGAAATATGGAGCCATTT +
Preference number: 3 (lower is better)
Translates to: HSHTAHPCCLLE*SRISVGNMEPF
Trigger: AAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATGAGCGGTGTGGCTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR GCA 72 bp TCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTaGCATAAATCTTGGAGATGGGACAGTGACAGTGCT +
Preference number: 3 (lower is better)
Translates to: SPSLRPVSEVLG*HKSWRWDSDSA
Trigger: AGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR CCA 72 bp AGGCCTGTGTCTGAGGTATTGGGCTGCCATAAATCTTaGAGATGGGACAGTGACAGTGCTGCCAATAGATGT +
Preference number: 3 (lower is better)
Translates to: RPVSEVLGCHKS*RWDSDSAANRC
Trigger: ACATCTATTGGCAGCACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR TCA 72 bp TGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTaGGTCGCTTTATTTATTTTAACAGATGGTGCAGTG +
Preference number: 3 (lower is better)
Translates to: CNKLYVWNKGSQ*VALFILTDGAV
Trigger: CACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCGGCCCTGGATGCCTTTaGGGCCCAGTTCCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAGPGCL*GPVPLG
Trigger: GCCGAGGGGAACTGGGCCCCAAAGGCATCCAGGGCC...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCCACGGAGCCCCTGTaGCCAGCCTCACCACGCTCC +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATPTEPL*PASPRS
Trigger: GGAGCGTGGTGAGGCTGGTCACAGGGGCTCCGTGGG...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCTCGCCTTTGGACCCTaGTCGTCCAGGGAGCCCCGG +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLILAFGP*SSREPR
Trigger: CCGGGGCTCCCTGGACGAGCAGGGTCCAAAGGCGAG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCCTTTCTGCGCGGAGGTaGCCGTCAGGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQALSARR*PSGAAP
Trigger: TGGGGCAGCTCCTGACGGCCACCTCCGCGCAGAAAG...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCGAGGCCACTCACTCCTaGCTCTCCAGGAGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAEATHS*LSRRSR
Trigger: CCTGGACCTCCTGGAGAGGCAGGAGTGAGTGGCCTC...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCCATCCTTGCCTGGCATaGCTGGTTCTCCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAHPCLA*LVLRLA
Trigger: GGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATG...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCTACACCAGGCAGTCCTaGCAGTCCTGCCTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAYTRQS*QSCLSR
Trigger: CCGGGAGAGGCAGGACTGCCAGGACTGCCTGGTGTA...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCGGCCTGGCGGGCAGATaGCGGGACACTGCAGATCAG +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIGLAGR*RDTADQ
Trigger: CTGATCTGCAGTGTCCCGCCATCTGCCCGCCAGGCC...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCGCCTGGTTCTCCGCCTaGCCCAGCCATTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAAWFSA*PSHSRD
Trigger: ATCCCTGGAATGGCTGGGCCAGGCGGAGAACCAGGC...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCGCCTGTGGCACCTCCTaGACCCCGGTCACCCACATC +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIACGTS*TPVTHI
Trigger: GATGTGGGTGACCGGGGTCCAGGAGGTGCCACAGGC...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCAGCTCCTTGGCAGGCTaGAGTGTCGCAGATCCCTGG +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQASSLAG*SVADPW
Trigger: CCAGGGATCTGCGACACTTCAGCCTGCCAAGGAGCT...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCCTGGACTCCACTGGTaGCATTGGGGCCCTGGATGC +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIPGLHW*HWGPGC
Trigger: GCATCCAGGGCCCCAATGGCACCAGTGGAGTCCAGG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCAGGCCCATCCAGCCCTaGACCTGTTGCTCCCTTGTC +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQARPIQP*TCCSLV
Trigger: GACAAGGGAGCAACAGGTGCAGGGCTGGATGGGCCT...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACTTGCCTGGCATGCCTaGTTCTCCGCCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATLAWHA*FSAWPS
Trigger: GCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAG...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACGTGCCATTGGGGCCCTaGATGCCTTTGGGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDVPLGP*MPLGPS
Trigger: ACTGGGCCCCAAAGGCATCCAGGGCCCCAATGGCAC...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACACCTTGGAGGCCCAGTaGACCTGGGGGACCAGGTAC +
Preference number: 4 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDTLEAQ*TWGTRY
Trigger: GTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGT...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCCTTCCCGGTGATGCCTaGGACACCCTGCACACCTTG +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQALPGDA*DTLHTL
Trigger: CAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAG...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACAGTGGCCAATAGAGCCTaGAGGGCCTGGAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATVANRA*RAWRAW
Trigger: CCAGGCCCTCCAGGCCCTCCAGGCTCTATTGGCCAC...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACTTCCCTGGCTTCCCTaGGGTCCCTTTGGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATLPWLP*GPFGSW
Trigger: CCAGGACCCAAAGGGACCTCAGGGAAGCCAGGGAAG...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACCCCCGCATAGCTCCCTaGTGCGCTGTTCACTGGCTT +
Preference number: 4 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDPRIAP*CAVHWL
Trigger: AAGCCAGTGAACAGCGCATCAGGGAGCTATGCGGGG...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCAGGCCAGGCTCACCATaGGCACCATCTCGACCATCT +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQARPGSP*APSRPS
Trigger: AGATGGTCGAGATGGTGCTCATGGTGAGCCTGGCCT...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACAATCCCTGGGGTACCCTaGGCACCAGCAGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATIPGVP*APAAPG
Trigger: TCCTGGAGCTGCTGGTGCTCAGGGTACCCCAGGGAT...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACAGCTCCTTGGCAGGCTaGAGTGTCGCAGATCCCTGG +
Preference number: 4 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDSSLAG*SVADPW
Trigger: CCAGGGATCTGCGACACTTCAGCCTGCCAAGGAGCT...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTCGGGGTCCCACTTTCTaGGCGGAGGTGGCCGTCAGG +
Preference number: 4 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACRGPTF*AEVAVR
Trigger: CCTGACGGCCACCTCCGCGCAGAAAGTGGGACCCCG...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACATTGGGGCCCTGGATaGCTTTGGGGCCCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATHWGPG*LWGPVP
Trigger: GGGAACTGGGCCCCAAAGGCATCCAGGGCCCCAATG...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCAGCCCTGCACCTGTTaGTCCCTTGTCCCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIQPCTC*SLVPSV
Trigger: GACAGAGGGGACAAGGGAGCAACAGGTGCAGGGCTG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CATCCCTGCTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCACTTGCCTGGCATGCCTaGTTCTCCGCCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: HPCCLLECSRISVGNMEPLAWHA*FSAWPS
Trigger: GCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAG...TGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCTCCACTGGTGCCATTaGGGCCCTGGATGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLILHWCH*GPGCLW
Trigger: CCAAAGGCATCCAGGGCCCCAATGGCACCAGTGGAG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACACCCTGGACTCCACTaGTGCCATTGGGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATHPGLH*CHWGPG
Trigger: TCCAGGGCCCCAATGGCACCAGTGGAGTCCAGGGTG...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAAGTGGCCGTCAGGAGCTaGCCCAGCAGCAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKVAVRS*PSSSRA
Trigger: AGCCCTGCTGCTGCTGGGGCAGCTCCTGACGGCCAC...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGACCCACTTTCCCAGGTaGTCCTGGGGTCCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVTHFPR*SWGPRG
Trigger: CCCCCTGGGACCCCAGGAGCACCTGGGAAAGTGGGT...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCTCCTTGGCCACCATTaGGACCAGCCTCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLILLGHH*DQPLPS
Trigger: AGAAGGGAGAGGCTGGTCGCAATGGTGGCCAAGGAG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCGGCCAGGGTCTCCTGTaGTGCCTTTTTGTCCCTGAA +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAGQGLL*CLFVPE
Trigger: TTCAGGGACAAAAAGGCAGCACAGGAGACCCTGGCC...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTGGCCTGGCGGGCAGATaGCGGGACACTGCAGATCAG +
Preference number: 4 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACGLAGR*RDTADQ
Trigger: CTGATCTGCAGTGTCCCGCCATCTGCCCGCCAGGCC...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACGGCCCTGGATGCCTTTaGGGCCCAGTTCCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYGPGCL*GPVPLG
Trigger: GCCGAGGGGAACTGGGCCCCAAAGGCATCCAGGGCC...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGGAGGCCCAGTGGACCTaGGGGACCAGGTACACCCTG +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVEAQWT*GTRYTL
Trigger: CAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTC...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTGTGGCCAATAGAGCCTaGAGGGCCTGGAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACVANRA*RAWRAW
Trigger: CCAGGCCCTCCAGGCCCTCCAGGCTCTATTGGCCAC...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACATCCCCTCTGTCACCCTaGCTCCCTCTTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATSPLSP*LPLGPG
Trigger: TCCTGGACCAAGAGGGAGCCAGGGTGACAGAGGGGA...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACAAGGCCAGGCTCACCATaGGCACCATCTCGACCATCT +
Preference number: 4 (lower is better)
Translates to: GHEGPTVASHCPFLSIATRPGSP*APSRPS
Trigger: AGATGGTCGAGATGGTGCTCATGGTGAGCCTGGCCT...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACCAGTCCTGGCAGTCCTaGCTCTCCCGGCTTCCCTGG +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYQSWQS*LSRLPW
Trigger: CCAGGGAAGCCGGGAGAGGCAGGACTGCCAGGACTG...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTGAGGCCACTCACTCCTaGCTCTCCAGGAGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACEATHS*LSRRSR
Trigger: CCTGGACCTCCTGGAGAGGCAGGAGTGAGTGGCCTC...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCCATCTTTGCCATCCTTaGCTGGCATGCCTGGTTCTC +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAHLCHP*LACLVL
Trigger: GAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATG...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACGAGGCCCAGTGGACCTaGGGGACCAGGTACACCCTG +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYEAQWT*GTRYTL
Trigger: CAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTC...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGACACCCTGCACACCTTaGAGGCCCAGTGGACCTGGG +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVTPCTP*RPSGPG
Trigger: CCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGT...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CATCCCTGCTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCAAGTGTCGCAGATCCCTaGGGTACCCTGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: HPCCLLECSRISVGNMEPSVADP*GTLSTS
Trigger: GCTGGTGCTCAGGGTACCCCAGGGATCTGCGACACT...TGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACTTCCCTGGCTTCCCTaGGGTCCCTTTGGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKLPWLP*GPFGSW
Trigger: CCAGGACCCAAAGGGACCTCAGGGAAGCCAGGGAAG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAAATCCCTGGGGTACCCTaGGCACCAGCAGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKIPGVP*APAAPG
Trigger: TCCTGGAGCTGCTGGTGCTCAGGGTACCCCAGGGAT...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCCAGCTTCTCCATCAATaGCATCCTTGCCGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAQLLHQ*HPCRVF
Trigger: GAAAACCCGGCAAGGATGGCATTGATGGAGAAGCTG...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGATGCCTGGGACACCCTaGACACCTTGGAGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVMPGTP*TPWRPS
Trigger: ACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCAT...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACCAGCTGGACCAGGCCTaGCGATGGAGCCTGGTGCTA +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYQLDQA*RWSLVL
Trigger: TAGCACCAGGCTCCATCGGCAGGCCTGGTCCAGCTG...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACTCCAGGGGCACCTTTaGGTCCTGCGGGTCCATCTC +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKLQGHL*VLRVHL
Trigger: GAGATGGACCCGCAGGACCCAAAGGTGCCCCTGGAG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGCTCCTAGTTCCCCAGTaGGACCACGGTATCCAGGGG +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVLLVPQ*DHGIQG
Trigger: CCCCTGGATACCGTGGTCCCACTGGGGAACTAGGAG...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGTCCCCTCTGTCACCCTaGCTCCCTCTTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVSPLSP*LPLGPG
Trigger: TCCTGGACCAAGAGGGAGCCAGGGTGACAGAGGGGA...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR TCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCCCACGGAGCCCCTGTaGCCAGCCTCACCACGCTCC +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLPTEPL*PASPRS
Trigger: GGAGCGTGGTGAGGCTGGTCACAGGGGCTCCGTGGG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCCAGCTTCTCCATCAATaGCATCCTTGCCGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIQLLHQ*HPCRVF
Trigger: GAAAACCCGGCAAGGATGGCATTGATGGAGAAGCTG...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCTCGCCTTTGGACCCTaGTCGTCCAGGGAGCCCCGG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVLAFGP*SSREPR
Trigger: CCGGGGCTCCCTGGACGAGCAGGGTCCAAAGGCGAG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACCCTGAAAGCCACGGATaGCAGGAGCACCAGGAGGAC +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYPESHG*QEHQED
Trigger: GTCCTCCTGGTGCTCCTGGCATCCGTGGCTTTCAGG...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCGCCAACTGTGCAATTTaGTCACTGATCATACCCCCG +
Preference number: 4 (lower is better)
Translates to: GPTVASHCPFLSIATPLIANCAI*SLIIPP
Trigger: CGGGGGTATGATCAGTGAGCAAATTGCACAGTTGGC...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGAACCCCGGCATTCCTaGGGGTCCCGGAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVEPRHS*GSRRAW
Trigger: CCAGGCCCTCCGGGACCCCCAGGAATGCCGGGGTTC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTGAACCCCGGCATTCCTaGGGGTCCCGGAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLEPRHS*GSRRAW
Trigger: CCAGGCCCTCCGGGACCCCCAGGAATGCCGGGGTTC...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACGGGCCTTTCTCTCCTTaGCCACCATTGCGACCAGCC +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYGPFSP*PPLRPA
Trigger: GGCTGGTCGCAATGGTGGCCAAGGAGAGAAAGGCCC...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGCTCACCACGCTCCCCTaGAACACCAACATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVLTTLP*NTNISR
Trigger: CCTGGAGATGTTGGTGTTCCAGGGGAGCGTGGTGAG...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTGAACCTGCAATGCCCTaGTCTCCCTTAGGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACEPAMP*SPLGPV
Trigger: CACAGGCCCTAAGGGAGACCAGGGCATTGCAGGTTC...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCCCCGAGCGCCAGGGTaGCCAATAGAGCCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVPRAPG*PIEPGG
Trigger: CCCTCCAGGCTCTATTGGCCACCCTGGCGCTCGGGG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTGTGGCCGTCAGGAGCTaGCCCAGCAGCAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLVAVRS*PSSSRA
Trigger: AGCCCTGCTGCTGCTGGGGCAGCTCCTGACGGCCAC...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCAGTCCTGGCAGTCCTaGCTCTCCCGGCTTCCCTGG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVQSWQS*LSRLPW
Trigger: CCAGGGAAGCCGGGAGAGGCAGGACTGCCAGGACTG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCCTGTAGCCCCACGGTaGCTGGGATTCCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVPVAPR*LGFQEA
Trigger: GGCCTCCTGGAATCCCAGGCACCGTGGGGCTACAGG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACCGGCACACCATCTTTaGCATCCTTGCCTGGCATGC +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKPAHHL*HPCLAC
Trigger: GCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACTCGCCTTTGTCCCCTaGAAGACCATCGGAACCTGC +
Preference number: 4 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKLAFVP*KTIGTC
Trigger: GCAGGTTCCGATGGTCTTCCAGGGGACAAAGGCGAG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGCCTGTAGCCCCACGGTaGCTGGGATTCCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVPVAPR*LGFQEA
Trigger: GGCCTCCTGGAATCCCAGGCACCGTGGGGCTACAGG...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGCAGGGTCTCCTGTGCTaGCTTTTTGTCCCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVQGLLC*LFVPES
Trigger: GCTTTCAGGGACAAAAAGGCAGCACAGGAGACCCTG...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGAAGACCATCGGAACCTaGAATGCCCTGGTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVKTIGT*NALVSL
Trigger: AAGGGAGACCAGGGCATTGCAGGTTCCGATGGTCTT...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCCTGGACTCCACTGGTaGCATTGGGGCCCTGGATGC +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVPGLHW*HWGPGC
Trigger: GCATCCAGGGCCCCAATGGCACCAGTGGAGTCCAGG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCCCCGAGCGCCAGGGTaGCCAATAGAGCCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSPRAPG*PIEPGG
Trigger: CCCTCCAGGCTCTATTGGCCACCCTGGCGCTCGGGG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACCAGGGTCTCCTGTGCTaGCTTTTTGTCCCTGAAAGC +
Preference number: 4 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYQGLLC*LFVPES
Trigger: GCTTTCAGGGACAAAAAGGCAGCACAGGAGACCCTG...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCAGCTGGACCAGGCCTaGCGATGGAGCCTGGTGCTA +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLQLDQA*RWSLVL
Trigger: TAGCACCAGGCTCCATCGGCAGGCCTGGTCCAGCTG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTGCCACGGAACCCTTCTaGTCCCCTTTCACCCCTGTC +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVATEPF*SPFTPV
Trigger: GACAGGGGTGAAAGGGGACCAGAAGGGTTCCGTGGC...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTACCAGGAGGACCTTGTaGGCCAAGAGCTCCCACGGA +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVTRRTL*AKSSHG
Trigger: TCCGTGGGAGCTCTTGGCCCACAAGGTCCTCCTGGT...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTGTGCCATTGGGGCCCTaGATGCCTTTGGGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLVPLGP*MPLGPS
Trigger: ACTGGGCCCCAAAGGCATCCAGGGCCCCAATGGCAC...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCTCCACTGGTGCCATTaGGGCCCTGGATGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVLHWCH*GPGCLW
Trigger: CCAAAGGCATCCAGGGCCCCAATGGCACCAGTGGAG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCACCCTGGACTCCACTaGTGCCATTGGGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLHPGLH*CHWGPG
Trigger: TCCAGGGCCCCAATGGCACCAGTGGAGTCCAGGGTG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGACACCCTGCACACCTTaGAGGCCCAGTGGACCTGGG +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVTPCTP*RPSGPG
Trigger: CCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGT...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTAGTGTCGCAGATCCCTaGGGTACCCTGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVSVADP*GTLSTS
Trigger: GCTGGTGCTCAGGGTACCCCAGGGATCTGCGACACT...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCTCCTTGGCCACCATTaGGACCAGCCTCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVLLGHH*DQPLPS
Trigger: AGAAGGGAGAGGCTGGTCGCAATGGTGGCCAAGGAG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCATTGGGGCCCTGGATaGCTTTGGGGCCCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSHWGPG*LWGPVP
Trigger: GGGAACTGGGCCCCAAAGGCATCCAGGGCCCCAATG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGTCCCTGAGGTCCCTTTaGGTCCTGGAAGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVSLRSL*VLEGQA
Trigger: TGCCTGGCCTTCCAGGACCCAAAGGGACCTCAGGGA...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCTCCAGGGGCACCTTTaGGTCCTGCGGGTCCATCTC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSLQGHL*VLRVHL
Trigger: GAGATGGACCCGCAGGACCCAAAGGTGCCCCTGGAG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTGCCACGGAACCCTTCTaGTCCCCTTTCACCCCTGTC +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLATEPF*SPFTPV
Trigger: GACAGGGGTGAAAGGGGACCAGAAGGGTTCCGTGGC...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCTCCCTTCTCGCCTTTaGACCCTGCTCGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLLPSRL*TLLVQG
Trigger: TCCCTGGACGAGCAGGGTCCAAAGGCGAGAAGGGAG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGCTCCCTTCTCGCCTTTaGACCCTGCTCGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVLPSRL*TLLVQG
Trigger: TCCCTGGACGAGCAGGGTCCAAAGGCGAGAAGGGAG...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGATCTCCAGGGATACCTaGCTCTCCAGAGGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVISRDT*LSRGAS
Trigger: GCTGGCCCCTCTGGAGAGCCAGGTATCCCTGGAGAT...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTATCTCCAGGGATACCTaGCTCTCCAGAGGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLISRDT*LSRGAS
Trigger: GCTGGCCCCTCTGGAGAGCCAGGTATCCCTGGAGAT...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCTCACCACGCTCCCCTaGAACACCAACATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVLTTLP*NTNISR
Trigger: CCTGGAGATGTTGGTGTTCCAGGGGAGCGTGGTGAG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCTCGCCTTTGTCCCCTaGAAGACCATCGGAACCTGC +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVLAFVP*KTIGTC
Trigger: GCAGGTTCCGATGGTCTTCCAGGGGACAAAGGCGAG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTACCTTGGAGGCCCAGTaGACCTGGGGGACCAGGTAC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSTLEAQ*TWGTRY
Trigger: GTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGT...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCTTCCCGGTGATGCCTaGGACACCCTGCACACCTTG +
Preference number: 4 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLLPGDA*DTLHTL
Trigger: CAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
3UTR CAA 72 bp TTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATaGGGCTGCCATAAATCTTGGAGATGGGACAGTGAC +
Preference number: 4 (lower is better)
Translates to: LKSPSLRPVSEV*GCHKSWRWDSD
Trigger: GTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGTTCACTGGCTTCCTTaGCCGGAACTCCAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVVHWLP*PELQAS
Trigger: GGAAGCCTGGAGTTCCGGGCAAGGAAGCCAGTGAAC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCAGCCCTGCACCTGTTaGTCCCTTGTCCCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSQPCTC*SLVPSV
Trigger: GACAGAGGGGACAAGGGAGCAACAGGTGCAGGGCTG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTAGGCCCATCCAGCCCTaGACCTGTTGCTCCCTTGTC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSRPIQP*TCCSLV
Trigger: GACAAGGGAGCAACAGGTGCAGGGCTGGATGGGCCT...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTACTTTCTGCGCGGAGGTaGCCGTCAGGAGCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLLSARR*PSGAAP
Trigger: TGGGGCAGCTCCTGACGGCCACCTCCGCGCAGAAAG...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGGGCCTTTCTCTCCTTaGCCACCATTGCGACCAGCC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSGPFSP*PPLRPA
Trigger: GGCTGGTCGCAATGGTGGCCAAGGAGAGAAAGGCCC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAGCCTGTGGCACCTCCTaGACCCCGGTCACCCACATC +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLACGTS*TPVTHI
Trigger: GATGTGGGTGACCGGGGTCCAGGAGGTGCCACAGGC...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TCATGGAATTGTACAAAACTCTTAGATAACACCATCCCTCCCAGATGCTGGGTTCCTAACACAGCTCCTTaGCAGGCTGAAGTGTCGCAG +
Preference number: 4 (lower is better)
Translates to: SWNCTKLLDNTIPPRCWVPNTAP*QAEVSQ
Trigger: CTGCGACACTTCAGCCTGCCAAGGAGCTGTGTTAGG...AACCCAGCATCTGGGAGGGATGGTGTTATCTAAGAGTTTTGTACAATTCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTACATCCTTGCCTGGCATaGCTGGTTCTCCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLHPCLA*LVLRLA
Trigger: GGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATG...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCCGGCACACCATCTTTaGCATCCTTGCCTGGCATGC +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSPAHHL*HPCLAC
Trigger: GCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAGCCTGGTTCTCCGCCTaGCCCAGCCATTCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLAWFSA*PSHSRD
Trigger: ATCCCTGGAATGGCTGGGCCAGGCGGAGAACCAGGC...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGAACCTGCAATGCCCTaGTCTCCCTTAGGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSEPAMP*SPLGPV
Trigger: CACAGGCCCTAAGGGAGACCAGGGCATTGCAGGTTC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGCATCTTTGCCATCCTTaGCTGGCATGCCTGGTTCTC +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVHLCHP*LACLVL
Trigger: GAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATG...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGAAGACCATCGGAACCTaGAATGCCCTGGTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVKTIGT*NALVSL
Trigger: AAGGGAGACCAGGGCATTGCAGGTTCCGATGGTCTT...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAATGCCTGGGACACCCTaGACACCTTGGAGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLMPGTP*TPWRPS
Trigger: ACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCAT...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGGGCTTCCTCAGGTGTaGAGCCAACTGTGCAATTTG +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVGLPQV*SQLCNL
Trigger: CAAATTGCACAGTTGGCTGCACACCTGAGGAAGCCC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATCCCTGAGGTCCCTTTaGGTCCTGGAAGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLSLRSL*VLEGQA
Trigger: TGCCTGGCCTTCCAGGACCCAAAGGGACCTCAGGGA...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAACCAGGAGGACCTTGTaGGCCAAGAGCTCCCACGGA +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLTRRTL*AKSSHG
Trigger: TCCGTGGGAGCTCTTGGCCCACAAGGTCCTCCTGGT...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTACTCCTAGTTCCCCAGTaGGACCACGGTATCCAGGGG +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLLLVPQ*DHGIQG
Trigger: CCCCTGGATACCGTGGTCCCACTGGGGAACTAGGAG...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCCTAACACAGCTCCTTaGCAGGCTGAAGTGTCGCAG +
Preference number: 4 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSPNTAP*QAEVSQ
Trigger: CTGCGACACTTCAGCCTGCCAAGGAGCTGTGTTAGG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAGTTCACTGGCTTCCTTaGCCGGAACTCCAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLVHWLP*PELQAS
Trigger: GGAAGCCTGGAGTTCCGGGCAAGGAAGCCAGTGAAC...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGCCAACTGTGCAATTTaGTCACTGATCATACCCCCG +
Preference number: 4 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVANCAI*SLIIPP
Trigger: CGGGGGTATGATCAGTGAGCAAATTGCACAGTTGGC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTCCAGGGATTCCTTTaGGACCAGGCCTGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLFQGFL*DQACPG
Trigger: ACCTGGGCAGGCCTGGTCCCAAAGGAATCCCTGGAA...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR GCA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTAGGGCTTCCTCAGGTGTaGAGCCAACTGTGCAATTTG +
Preference number: 4 (lower is better)
Translates to: CVINCMFGTKVPSESLYLGLPQV*SQLCNL
Trigger: CAAATTGCACAGTTGGCTGCACACCTGAGGAAGCCC...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 90 bp TCCTTGCCCGGAACTCCAGGCTTCCCGGTGATGCCTGGGACACCCTaGACACCTTGGAGGCCCAGTGGACCTGGGGGACCAGGTACACCC +
Preference number: 5 (lower is better)
Translates to: SLPGTPGFPVMPGTP*TPWRPSGPGGPGTP
Trigger: GGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCTGGAGTTCCGGGCAAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 90 bp GGTGATGCCTGGGACACCCTGCACACCTTGGAGGCCCAGTGGACCTaGGGGACCAGGTACACCCTGGACTCCACTGGTGCCATTGGGGCC +
Preference number: 5 (lower is better)
Translates to: GDAWDTLHTLEAQWT*GTRYTLDSTGAIGA
Trigger: GGCCCCAATGGCACCAGTGGAGTCCAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 90 bp GGGACCAGGCCTGCCCAGGTCACCCTTAGGGCCACGGAACCCTTCTaGTCCCCTTTCACCCCTGTCACCCACTTTCCCAGGTGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: GTRPAQVTLRATEPF*SPFTPVTHFPRCSW
Trigger: CCAGGAGCACCTGGGAAAGTGGGTGACAGGGGTGAAAGGGGACCAGAAGGGTTCCGTGGCCCTAAGGGTGACCTGGGCAGGCCTGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 90 bp GGAACTCCAGGCTTCCCGGTGATGCCTGGGACACCCTGCACACCTTaGAGGCCCAGTGGACCTGGGGGACCAGGTACACCCTGGACTCCA +
Preference number: 5 (lower is better)
Translates to: GTPGFPVMPGTPCTP*RPSGPGGPGTPWTP
Trigger: TGGAGTCCAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCTGGAGTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 90 bp CTTCCCGGTGATGCCTGGGACACCCTGCACACCTTGGAGGCCCAGTaGACCTGGGGGACCAGGTACACCCTGGACTCCACTGGTGCCATT +
Preference number: 5 (lower is better)
Translates to: LPGDAWDTLHTLEAQ*TWGTRYTLDSTGAI
Trigger: AATGGCACCAGTGGAGTCCAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 90 bp CACCATCAAGTCCCGGCACACCATCTTTGCCATCCTTGCCTGGCATaGCTGGTTCTCCGCCTGGCCCAGCCATTCCAGGGATTCCTTTGG +
Preference number: 5 (lower is better)
Translates to: HHQVPAHHLCHPCLA*LVLRLAQPFQGFLW
Trigger: CCAAAGGAATCCCTGGAATGGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGATGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 90 bp CTTCTCACCATCAAGTCCCGGCACACCATCTTTGCCATCCTTGCCTaGCATGCCTGGTTCTCCGCCTGGCCCAGCCATTCCAGGGATTCC +
Preference number: 5 (lower is better)
Translates to: LLTIKSRHTIFAILA*HAWFSAWPSHSRDS
Trigger: GGAATCCCTGGAATGGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGATGGTGAGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCTACACCTTGAGGCCCTaGGTAGCCCTGGTCCCCAGC +
Preference number: 5 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQAYTLRP*VALVPS
Trigger: GCTGGGGACCAGGGCTACCAAGGGCCTCAAGGTGTA...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CATCCCTGCTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCAGGTCCAGGGAGGCCTTaGCCCCCAAGTCCTGGTGGC +
Preference number: 5 (lower is better)
Translates to: HPCCLLECSRISVGNMEPGPGRP*PPSPGG
Trigger: GCCACCAGGACTTGGGGGCAAAGGCCTCCCTGGACC...TGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCTCTCCTTGGCCACCATaGCGACCAGCCTCTCCCTTC +
Preference number: 5 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQASPWPP*RPASPF
Trigger: GAAGGGAGAGGCTGGTCGCAATGGTGGCCAAGGAGA...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACGGGGCCTTTCTCTCCTaGGCCACCATTGCGACCAGC +
Preference number: 5 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDGAFLS*ATIATS
Trigger: GCTGGTCGCAATGGTGGCCAAGGAGAGAAAGGCCCC...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCGGACCCAGCTCGCCTTaGTCCCCTGGAAGACCATCG +
Preference number: 5 (lower is better)
Translates to: GPTVASHCPFLSIATPLIGPSSP*SPGRPS
Trigger: CGATGGTCTTCCAGGGGACAAAGGCGAGCTGGGTCC...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCACTCCACTGGTGCCATaGGGGCCCTGGATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQATPLVP*GPWMPL
Trigger: CAAAGGCATCCAGGGCCCCAATGGCACCAGTGGAGT...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACCCAGCCCTGCACCTGTaGCTCCCTTGTCCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDPALHL*LPCPLC
Trigger: ACAGAGGGGACAAGGGAGCAACAGGTGCAGGGCTGG...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCTCTCCTTGGCCACCATaGCGACCAGCCTCTCCCTTC +
Preference number: 5 (lower is better)
Translates to: GPTVASHCPFLSIATPLISPWPP*RPASPF
Trigger: GAAGGGAGAGGCTGGTCGCAATGGTGGCCAAGGAGA...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACATCTCCCTTCTCGCCTTaGGACCCTGCTCGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: GHEGPTVASHCPFLSIATSPFSP*DPARPG
Trigger: CCCTGGACGAGCAGGGTCCAAAGGCGAGAAGGGAGA...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGCCATGAAGGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACATACACCTTGAGGCCCTaGGTAGCCCTGGTCCCCAGC +
Preference number: 5 (lower is better)
Translates to: GHEGPTVASHCPFLSIATYTLRP*VALVPS
Trigger: GCTGGGGACCAGGGCTACCAAGGGCCTCAAGGTGTA...TGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCCTTCATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACGATGCCAGGTACACCTaGAGGCCCTTGGTAGCCCTG +
Preference number: 5 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDDARYT*RPLVAL
Trigger: CAGGGCTACCAAGGGCCTCAAGGTGTACCTGGCATC...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CATCCCTGCTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTCCCTGAGGTCCCTTaGGGTCCTGGAAGGCCAGGC +
Preference number: 5 (lower is better)
Translates to: HPCCLLECSRISVGNMEPFPEVP*GPGRPG
Trigger: GCCTGGCCTTCCAGGACCCAAAGGGACCTCAGGGAA...TGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CATCCCTGCTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCACCAGCCCTGCACCTGTaGCTCCCTTGTCCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: HPCCLLECSRISVGNMEPPALHL*LPCPLC
Trigger: ACAGAGGGGACAAGGGAGCAACAGGTGCAGGGCTGG...TGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAGCAGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTTTCCCTGAGGTCCCTTaGGGTCCTGGAAGGCCAGGC +
Preference number: 5 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACFPEVP*GPGRPG
Trigger: GCCTGGCCTTCCAGGACCCAAAGGGACCTCAGGGAA...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGTCTCCAGGGGCACCTTaGGGTCCTGCGGGTCCATCT +
Preference number: 5 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVSPGAP*GPAGPS
Trigger: AGATGGACCCGCAGGACCCAAAGGTGCCCCTGGAGA...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CTGTGTCTGAGGTATTGGGCTGCCATAAATCTTGGAGATGGGACAGTGACAGTGGGGGCCTTTCTCTCCTaGGCCACCATTGCGACCAGC +
Preference number: 5 (lower is better)
Translates to: LCLRYWAAINLGDGTVTVGAFLS*ATIATS
Trigger: GCTGGTCGCAATGGTGGCCAAGGAGAGAAAGGCCCC...CACTGTCACTGTCCCATCTCCAAGATTTATGGCAGCCCAATACCTCAGACACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GATGGGACAGTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCTCCTGTGCTGCCTTTTaGTCCCTGAAAGCCACGGAT +
Preference number: 5 (lower is better)
Translates to: DGTVTVLPIDVLGAKQQASCAAF*SLKATD
Trigger: ATCCGTGGCTTTCAGGGACAAAAAGGCAGCACAGGA...GGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCACTGTCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACTCTCCAGGGGCACCTTaGGGTCCTGCGGGTCCATCT +
Preference number: 5 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYSPGAP*GPAGPS
Trigger: AGATGGACCCGCAGGACCCAAAGGTGCCCCTGGAGA...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGACCAACTGTAGCCAGCCACTGTCCATTTCTGTCCATAGCCACACCGCTCATCTCCTGTGCTGCCTTTTaGTCCCTGAAAGCCACGGAT +
Preference number: 5 (lower is better)
Translates to: GPTVASHCPFLSIATPLISCAAF*SLKATD
Trigger: ATCCGTGGCTTTCAGGGACAAAAAGGCAGCACAGGA...GATGAGCGGTGTGGCTATGGACAGAAATGGACAGTGGCTGGCTACAGTTGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAAGCACCTGTTGCTCCCTaGTCCCCTCTGTCACCCTGG +
Preference number: 5 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKAPVAP*SPLSPW
Trigger: CCAGGGTGACAGAGGGGACAAGGGAGCAACAGGTGC...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACCCGGCACACCATCTTaGCCATCCTTGCCTGGCATG +
Preference number: 5 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKPGTPS*PSLPGM
Trigger: CATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTGGGCCCTGGATGCCTTaGGGGCCCAGTTCCCCTCGG +
Preference number: 5 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLGPWMP*GPSSPR
Trigger: CCGAGGGGAACTGGGCCCCAAAGGCATCCAGGGCCC...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTTGTTCACTGGCTTCCTaGCCCGGAACTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACCSLAS*PGTPGF
Trigger: GAAGCCTGGAGTTCCGGGCAAGGAAGCCAGTGAACA...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GTGACAGTGCTGCCAATAGATGTTCTTGGGGCCAAGCAGCAGGCCATGAAGGACTTTGCCAACTTCTCCTaGTTCCCCTTTGTAGCCAGT +
Preference number: 5 (lower is better)
Translates to: VTVLPIDVLGAKQQAMKDFANFS*FPFVAS
Trigger: ACTGGCTACAAAGGGGAACAAGGAGAAGTTGGCAAA...GTCCTTCATGGCCTGCTGCTTGGCCCCAAGAACATCTATTGGCAGCACTGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGGGCCCTGGATGCCTTaGGGGCCCAGTTCCCCTCGG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSGPWMP*GPSSPR
Trigger: CCGAGGGGAACTGGGCCCCAAAGGCATCCAGGGCCC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAATGTTCACTGGCTTCCTaGCCCGGAACTCCAGGCTTC +
Preference number: 5 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKCSLAS*PGTPGF
Trigger: GAAGCCTGGAGTTCCGGGCAAGGAAGCCAGTGAACA...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAACCATCTTTGCCATCCTaGCCTGGCATGCCTGGTTCT +
Preference number: 5 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKPSLPS*PGMPGS
Trigger: AGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGG...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp GGTTTAAAGTCTCCATCCCTAAGGCCTGTGTCTGAGGTATTGGGCTGCCATAAAGCCAGACTCTCCTTTTaGTCCAACGGGGCCATTAGG +
Preference number: 5 (lower is better)
Translates to: GLKSPSLRPVSEVLGCHKARLSF*SNGAIR
Trigger: CCTAATGGCCCCGTTGGACAAAAAGGAGAGTCTGGC...TTTATGGCAGCCCAATACCTCAGACACAGGCCTTAGGGATGGAGACTTTAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp ATAACACCATCCCTCCCAGATGCTGGGTTTAAAGTCTCCATCCCTAAGGCCTGTCCCTTCTCACCATCTTaGCCAACTTCTCCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: ITPSLPDAGFKVSIPKACPFSPS*PTSPCS
Trigger: GGAACAAGGAGAAGTTGGCAAAGATGGTGAGAAGGG...ACAGGCCTTAGGGATGGAGACTTTAAACCCAGCATCTGGGAGGGATGGTGTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGGGACCCAGCTCGCCTTaGTCCCCTGGAAGACCATCG +
Preference number: 5 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVGPSSP*SPGRPS
Trigger: CGATGGTCTTCCAGGGGACAAAGGCGAGCTGGGTCC...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGCACCTGTTGCTCCCTaGTCCCCTCTGTCACCCTGG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSAPVAP*SPLSPW
Trigger: CCAGGGTGACAGAGGGGACAAGGGAGCAACAGGTGC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CTGCCTGCTGGAGTGCTCTCGTATTTCAGTAGGAAATATGGAGCCATTTCCTACTTTGCCAACTTCTCCTaGTTCCCCTTTGTAGCCAGT +
Preference number: 5 (lower is better)
Translates to: LPAGVLSYFSRKYGAISYFANFS*FPFVAS
Trigger: ACTGGCTACAAAGGGGAACAAGGAGAAGTTGGCAAA...GTAGGAAATGGCTCCATATTTCCTACTGAAATACGAGAGCACTCCAGCAGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTCCCGGCACACCATCTTaGCCATCCTTGCCTGGCATG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSPGTPS*PSLPGM
Trigger: CATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGG...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTACTCCACTGGTGCCATaGGGGCCCTGGATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSTPLVP*GPWMPL
Trigger: CAAAGGCATCCAGGGCCCCAATGGCACCAGTGGAGT...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTTTCGCAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTCACCCTGGCTCCCTCTaGGTCCAGGATCTCCTAGTT +
Preference number: 5 (lower is better)
Translates to: FSQYIALMPTFPYCEAVLHPGSL*VQDLLV
Trigger: AACTAGGAGATCCTGGACCAAGAGGGAGCCAGGGTG...AAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTGCGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp CAGTACATTGCTTTAATGCCCACATTTCCATATTGTGAGGCAGTGCTTTATGTGCACCCTGGCTCCCTCTaGGTCCAGGATCTCCTAGTT +
Preference number: 5 (lower is better)
Translates to: QYIALMPTFPYCEAVLYVHPGSL*VQDLLV
Trigger: AACTAGGAGATCCTGGACCAAGAGGGAGCCAGGGTG...CACATAAAGCACTGCCTCACAATATGGAAATGTGGGCATTAAAGCAATGTACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGATGCCAGGTACACCTaGAGGCCCTTGGTAGCCCTG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSDARYT*RPLVAL
Trigger: CAGGGCTACCAAGGGCCTCAAGGTGTACCTGGCATC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATCTCCCTTCTCGCCTTaGGACCCTGCTCGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: CVINCMFGTKVPSESLYLSPFSP*DPARPG
Trigger: CCCTGGACGAGCAGGGTCCAAAGGCGAGAAGGGAGA...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTATTTTAACAGATGGTGCAGTGCCAGACTCTCCTTTTaGTCCAACGGGGCCATTAGG +
Preference number: 5 (lower is better)
Translates to: LEQRFPVSRFIYFNRWCSARLSF*SNGAIR
Trigger: CCTAATGGCCCCGTTGGACAAAAAGGAGAGTCTGGC...ACTGCACCATCTGTTAAAATAAATAAAGCGACTCACTGGGAACCTTTGTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTACCATCTTTGCCATCCTaGCCTGGCATGCCTGGTTCT +
Preference number: 5 (lower is better)
Translates to: CVINCMFGTKVPSESLYLPSLPS*PGMPGS
Trigger: AGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGG...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS-3UTR CAA 90 bp TGTGTAATAAACTGTATGTTTGGAACAAAGGTTCCCAGTGAGTCGCTTTATTTACCCTTCTCACCATCTTaGCCAACTTCTCCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: CVINCMFGTKVPSESLYLPFSPS*PTSPCS
Trigger: GGAACAAGGAGAAGTTGGCAAAGATGGTGAGAAGGG...TAAATAAAGCGACTCACTGGGAACCTTTGTTCCAAACATACAGTTTATTACACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GGTCCCACTTTCTGCGCGGAGGTGGCCGTCAGGAGCTaGCCCAGCAGCAGCAGGGCTAGGGCAGGCGCTCCG +
Preference number: 6 (lower is better)
Translates to: GPTFCAEVAVRS*PSSSRARAGAP
Trigger: CGGAGCGCCTGCCCTAGCCCTGCTGCTGCTGGGGCAGCTCCTGACGGCCACCTCCGCGCAGAAAGTGGGACC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GGTCCCGGAGGGCCTGGCGGGCAGATGGCGGGACACTaGAGATCAGTAGCACCTTCAGGGAGGACTCCAGGG +
Preference number: 6 (lower is better)
Translates to: GPGGPGGQMAGH*RSVAPSGRTPG
Trigger: CCCTGGAGTCCTCCCTGAAGGTGCTACTGATCTGCAGTGTCCCGCCATCTGCCCGCCAGGCCCTCCGGGACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp CTTGAACCCCGGCATTCCTGGGGGTCCCGGAGGGCCTaGCGGGCAGATGGCGGGACACTGCAGATCAGTAGC +
Preference number: 6 (lower is better)
Translates to: LEPRHSWGSRRA*RADGGTLQISS
Trigger: GCTACTGATCTGCAGTGTCCCGCCATCTGCCCGCCAGGCCCTCCGGGACCCCCAGGAATGCCGGGGTTCAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp GGCTTCCCGGTGATGCCTGGGACACCCTGCACACCTTaGAGGCCCAGTGGACCTGGGGGACCAGGTACACCC +
Preference number: 6 (lower is better)
Translates to: GFPVMPGTPCTP*RPSGPGGPGTP
Trigger: GGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 90 bp CGGAACTCCAGGCTTCCCGGTGATGCCTGGGACACCCTGCACACCTaGGAGGCCCAGTGGACCTGGGGGACCAGGTACACCCTGGACTCC +
Preference number: 6 (lower is better)
Translates to: RNSRLPGDAWDTLHT*EAQWTWGTRYTLDS
Trigger: GGAGTCCAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCTGGAGTTCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GGAACTCCAGGCTTCCCGGTGATGCCTGGGACACCCTaGACACCTTGGAGGCCCAGTGGACCTGGGGGACCA +
Preference number: 6 (lower is better)
Translates to: GTPGFPVMPGTP*TPWRPSGPGGP
Trigger: TGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCTGGAGTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp TGGAGGCCCAGTGGACCTGGGGGACCAGGTACACCCTaGACTCCACTGGTGCCATTGGGGCCCTGGATGCCT +
Preference number: 6 (lower is better)
Translates to: WRPSGPGGPGTP*TPLVPLGPWMP
Trigger: AGGCATCCAGGGCCCCAATGGCACCAGTGGAGTCCAGGGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp AGGCTTCCCGGTGATGCCTGGGACACCCTGCACACCTaGGAGGCCCAGTGGACCTGGGGGACCAGGTACACC +
Preference number: 6 (lower is better)
Translates to: RLPGDAWDTLHT*EAQWTWGTRYT
Trigger: GGTGTACCTGGTCCCCCAGGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp ACGCTCCCCTGGAACACCAACATCTCCAGGGATACCTaGCTCTCCAGAGGGGCCAGCCTCACCCAGCTCGCC +
Preference number: 6 (lower is better)
Translates to: TLPWNTNISRDT*LSRGASLTQLA
Trigger: GGCGAGCTGGGTGAGGCTGGCCCCTCTGGAGAGCCAGGTATCCCTGGAGATGTTGGTGTTCCAGGGGAGCGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp TTCCTTGCCCGGAACTCCAGGCTTCCCGGTGATGCCTaGGACACCCTGCACACCTTGGAGGCCCAGTGGACC +
Preference number: 6 (lower is better)
Translates to: FLARNSRLPGDA*DTLHTLEAQWT
Trigger: GGTCCACTGGGCCTCCAAGGTGTGCAGGGTGTCCCAGGCATCACCGGGAAGCCTGGAGTTCCGGGCAAGGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp CTGAAAGCCACGGATGCCAGGAGCACCAGGAGGACCTaGTGGGCCAAGAGCTCCCACGGAGCCCCTGTGACC +
Preference number: 6 (lower is better)
Translates to: LKATDARSTRRT*WAKSSHGAPVT
Trigger: GGTCACAGGGGCTCCGTGGGAGCTCTTGGCCCACAAGGTCCTCCTGGTGCTCCTGGCATCCGTGGCTTTCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GACCTGGAGGGCCAGCTTCTCCATCAATGCCATCCTTaGCGGGTTTTCCAGGAGGCCCTTGGGGACCAGGGG +
Preference number: 6 (lower is better)
Translates to: DLEGQLLHQCHP*RVFQEALGDQG
Trigger: CCCCTGGTCCCCAAGGGCCTCCTGGAAAACCCGGCAAGGATGGCATTGATGGAGAAGCTGGCCCTCCAGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GTCCCGGCACACCATCTTTGCCATCCTTGCCTGGCATaGCTGGTTCTCCGCCTGGCCCAGCCATTCCAGGGA +
Preference number: 6 (lower is better)
Translates to: VPAHHLCHPCLA*LVLRLAQPFQG
Trigger: TCCCTGGAATGGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp GTAGGCCTTGGGGGCCCGGAAGGCCAGGGTCTCCTGTaGTGCCTTTTTGTCCCTGAAAGCCACGGATGCCAG +
Preference number: 6 (lower is better)
Translates to: VGLGGPEGQGLL*CLFVPESHGCQ
Trigger: CTGGCATCCGTGGCTTTCAGGGACAAAAAGGCAGCACAGGAGACCCTGGCCTTCCGGGCCCCCAAGGCCTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp CACGGAGCCCCTGTGACCAGCCTCACCACGCTCCCCTaGAACACCAACATCTCCAGGGATACCTGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: HGAPVTSLTTLP*NTNISRDTWLS
Trigger: GGAGAGCCAGGTATCCCTGGAGATGTTGGTGTTCCAGGGGAGCGTGGTGAGGCTGGTCACAGGGGCTCCGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 90 bp TTTTTGTCCCTGAAAGCCACGGATGCCAGGAGCACCAGGAGGACCTaGTGGGCCAAGAGCTCCCACGGAGCCCCTGTGACCAGCCTCACC +
Preference number: 6 (lower is better)
Translates to: FLSLKATDARSTRRT*WAKSSHGAPVTSLT
Trigger: GGTGAGGCTGGTCACAGGGGCTCCGTGGGAGCTCTTGGCCCACAAGGTCCTCCTGGTGCTCCTGGCATCCGTGGCTTTCAGGGACAAAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS GCA 72 bp CACCATCAAGTCCCGGCACACCATCTTTGCCATCCTTaGCTGGCATGCCTGGTTCTCCGCCTGGCCCAGCCA +
Preference number: 6 (lower is better)
Translates to: HHQVPAHHLCHP*LACLVLRLAQP
Trigger: TGGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGATGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp AGACCTGGAGGGCCAGCTTCTCCATCAATGCCATCCTaGCCGGGTTTTCCAGGAGGCCCTTGGGGACCAGGG +
Preference number: 6 (lower is better)
Translates to: RPGGPASPSMPS*PGFPGGPWGPG
Trigger: CCCTGGTCCCCAAGGGCCTCCTGGAAAACCCGGCAAGGATGGCATTGATGGAGAAGCTGGCCCTCCAGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp TCACCATCAAGTCCCGGCACACCATCTTTGCCATCCTaGCCTGGCATGCCTGGTTCTCCGCCTGGCCCAGCC +
Preference number: 6 (lower is better)
Translates to: SPSSPGTPSLPS*PGMPGSPPGPA
Trigger: GGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGATGGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp ACCATCTTTGCTGATGCCAGGTACACCTTGAGGCCCTaGGTAGCCCTGGTCCCCAGCAGGCCCATCCAGCCC +
Preference number: 6 (lower is better)
Translates to: TIFADARYTLRP*VALVPSRPIQP
Trigger: GGGCTGGATGGGCCTGCTGGGGACCAGGGCTACCAAGGGCCTCAAGGTGTACCTGGCATCAGCAAAGATGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp ATCAAGTCCCGGCACACCATCTTTGCCATCCTTGCCTaGCATGCCTGGTTCTCCGCCTGGCCCAGCCATTCC +
Preference number: 6 (lower is better)
Translates to: IKSRHTIFAILA*HAWFSAWPSHS
Trigger: GGAATGGCTGGGCCAGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CCA 72 bp AACGGGGCCATTAGGACCCAGCTCGCCTTTGTCCCCTaGAAGACCATCGGAACCTGCAATGCCCTGGTCTCC +
Preference number: 6 (lower is better)
Translates to: NGAIRTQLAFVP*KTIGTCNALVS
Trigger: GGAGACCAGGGCATTGCAGGTTCCGATGGTCTTCCAGGGGACAAAGGCGAGCTGGGTCCTAATGGCCCCGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp TCTCCCTTCTCACCATCAAGTCCCGGCACACCATCTTaGCCATCCTTGCCTGGCATGCCTGGTTCTCCGCCT +
Preference number: 6 (lower is better)
Translates to: SPFSPSSPGTPS*PSLPGMPGSPP
Trigger: AGGCGGAGAACCAGGCATGCCAGGCAAGGATGGCAAAGATGGTGTGCCGGGACTTGATGGTGAGAAGGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS TCA 72 bp CAGGCTCACCATGAGCACCATCTCGACCATCTTTGCTaGTGCCAGGTACACCTTGAGGCCCTTGGTAGCCCT +
Preference number: 6 (lower is better)
Translates to: QAHHEHHLDHLC*CQVHLEALGSP
Trigger: AGGGCTACCAAGGGCCTCAAGGTGTACCTGGCATCAGCAAAGATGGTCGAGATGGTGCTCATGGTGAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9
CDS CAA 72 bp AGGACTACCCTTCTCACCATCTTTGCCAACTTCTCCTaGTTCCCCTTTGTAGCCAGTAGGCCCCTTGAACCC +
Preference number: 6 (lower is better)
Translates to: RTTLLTIFANFS*FPFVASRPLEP
Trigger: GGGTTCAAGGGGCCTACTGGCTACAAAGGGGAACAAGGAGAAGTTGGCAAAGATGGTGAGAAGGGTAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103059.2
ENSMUST00000132527.9