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Pregenerated sensors for COL5A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026042

Ensembl transcript IDs: ENSMUST00000086430.5

Found 232 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAAGGATAAGGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTaGTGCAGGACCAGCCATTACTTCAAGAGTCTCAGGATGAACTTT +
Preference number: 1 (lower is better)
Translates to: LKDKVVRHFRSYVQS*CRTSHYFKSLRMNF
Trigger: AAAGTTCATCCTGAGACTCTTGAAGTAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACCTTATCCTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CCA 90 bp TTCAAGAGTCTCAGGATGAACTTTAAACAGTCACAGTTCTTGTGGTaGTCATTGATGGTAGTGCTCATTGTCGATATGTCTGGGCTTCTG +
Preference number: 1 (lower is better)
Translates to: FKSLRMNFKQSQFLW*SLMVVLIVDMSGLL
Trigger: CAGAAGCCCAGACATATCGACAATGAGCACTACCATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CCA 90 bp TACTTCAAGAGTCTCAGGATGAACTTTAAACAGTCACAGTTCTTGTaGTGGTCATTGATGGTAGTGCTCATTGTCGATATGTCTGGGCTT +
Preference number: 1 (lower is better)
Translates to: YFKSLRMNFKQSQFL*WSLMVVLIVDMSGL
Trigger: AAGCCCAGACATATCGACAATGAGCACTACCATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGAAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CCA 90 bp TCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTaGGTCATATTTTCTTATGAATGTTCTAATTCCAATCCTCACATT +
Preference number: 1 (lower is better)
Translates to: SIPACRDEVGHAKKC*VIFSYECSNSNPHI
Trigger: AATGTGAGGATTGGAATTAGAACATTCATAAGAAAATATGACCCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR TCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTATCAAGAGTCTCAGGATaGACTTTAAACAGTCACAGT +
Preference number: 2 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLSRVSG*TLNSHS
Trigger: ACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGA...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR TCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTTATGCTTCAGGAAAATaGGACTGTGACTGTGGGAGA +
Preference number: 2 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIYASGK*DCDCGR
Trigger: TCTCCCACAGTCACAGTCTCATTTTCCTGAAGCATA...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCACAGTCACAGTTCTTGTaGTGGTCATTGATGGTAGTG +
Preference number: 2 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSQSQFL*WSLMVV
Trigger: CACTACCATCAATGACCACCACAAGAACTGTGACTG...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR CCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGTCACAGTTCTTGTGGTaGTCATTGATGGTAGTGCTC +
Preference number: 2 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLSQFLW*SLMVVL
Trigger: GAGCACTACCATCAATGACCACCACAAGAACTGTGA...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR TCA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCGTCTTCATTTGTCACTaGTGTTCTGACAATAAGAGG +
Preference number: 2 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSVFICH*CSDNKR
Trigger: CCTCTTATTGTCAGAACATCAGTGACAAATGAAGAC...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR GCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGAAATCTATCCCAGCTTaGAGAGATGAGGTAGGTCAT +
Preference number: 2 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWKSIPA*RDEVGH
Trigger: ATGACCTACCTCATCTCTGCAAGCTGGGATAGATTT...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCGCCTATCTCCAGTCTTaGAATAACAACAGAAGCATA +
Preference number: 2 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAAYLQS*NNNRSI
Trigger: TATGCTTCTGTTGTTATTCCAAGACTGGAGATAGGC...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR TCA 72 bp AAGGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTaGTGCAGGACCAGCCATTACTTCAAGAGTCTCAGG +
Preference number: 3 (lower is better)
Translates to: KVVRHFRSYVQS*CRTSHYFKSLR
Trigger: CCTGAGACTCTTGAAGTAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR TCA 72 bp GATGCAGGACCAGCCATTACTTCAAGAGTCTCAGGATaGACTTTAAACAGTCACAGTTCTTGTGGTGGTCAT +
Preference number: 3 (lower is better)
Translates to: DAGPAITSRVSG*TLNSHSSCGGH
Trigger: ATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAGACTCTTGAAGTAATGGCTGGTCCTGCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CCA 72 bp CTCAGGATGAACTTTAAACAGTCACAGTTCTTGTGGTaGTCATTGATGGTAGTGCTCATTGTCGATATGTCT +
Preference number: 3 (lower is better)
Translates to: LRMNFKQSQFLW*SLMVVLIVDMS
Trigger: AGACATATCGACAATGAGCACTACCATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCATCCTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR-3UTR CAA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGTTCTTGTGGTGGTCATaGATGGTAGTGCTCATTGTC +
Preference number: 3 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLFLWWS*MVVLIV
Trigger: GACAATGAGCACTACCATCAATGACCACCACAAGAA...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAGTGCCCAGGAGGCCCTaGAGCACCTGGCTGACCAGG +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLVPRRP*STWLTR
Trigger: CCTGGTCAGCCAGGTGCTCCAGGGCCTCCTGGGCAC...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAGGTCCAGGAAGTCCCTaGAAGCCAGTGGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLGPGSP*KPVGPG
Trigger: TCCAGGCCCCACTGGCTTTCAGGGACTTCCTGGACC...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTTCTCCTGCGGGCCCTaGAGGTCCTGGAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSFSCGP*RSWSSS
Trigger: GCTGGAGCTCCAGGACCTGCAGGGCCCGCAGGAGAA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGGGTCCAGTACTGCCTTaGGGGCCAGGAGACCCAGGG +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKGPVLP*GPGDPG
Trigger: CCCTGGGTCTCCTGGCCCTCAAGGCAGTACTGGACC...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAACCAGGTGGGCCAGCTaGTCCTCTATCTCCCACTCG +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLTRWAS*SSISHS
Trigger: CGAGTGGGAGATAGAGGACCAGCTGGCCCACCTGGT...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGCACGAGAACCAGGATTaGCACGGGAGCCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKHENQD*HGSQEG
Trigger: GCCCTCCTGGCTCCCGTGGCAATCCTGGTTCTCGTG...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCGCTACCTTTGGGGCCTaGAAGGCCCATGCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSATFGA*KAHASR
Trigger: CCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGC...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCCCCTGTAGCACCAGGTaGACCCTGGGTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSPCSTR*TLGSST
Trigger: GGTAGAGGAACCCAGGGTCCACCTGGTGCTACAGGG...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTCCTGGGCTACCAGGTaGGCCAGCTGGTCCTCTATC +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSSWATR*ASWSSI
Trigger: GATAGAGGACCAGCTGGCCCACCTGGTAGCCCAGGA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCAGGTCCCACAGGGCCTaGAGGACCAACTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSRSHRA*RTNFSI
Trigger: GATGGAGAAGTTGGTCCTTCAGGCCCTGTGGGACCT...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGGGTCCAGGAAGACCCTaGAGGCCAGTGAACCCTCTG +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKGPGRP*RPVNPL
Trigger: CAGAGGGTTCACTGGCCTGCAGGGTCTTCCTGGACC...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTACTGACCAGGCACACCTaGCTCTCCATCAATTCCCTG +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLLTRHT*LSINSL
Trigger: CAGGGAATTGATGGAGAGCCAGGTGTGCCTGGTCAG...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGACCCTGAGAGCCAGCTaGACCAGGTGGCCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKTLRAS*TRWPSF
Trigger: GAAACTGGGCCACCTGGTCCAGCTGGCTCTCAGGGT...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAGCCTGTGGGGCCTTTaGCGCCAGGTGTACCATCAG +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKSLWGL*RQVYHQ
Trigger: CTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCT...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCAGGACCAACTGTGCCTaGATCACCCCGAGGACCTCT +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSRTNCA*ITPRTS
Trigger: AGAGGTCCTCGGGGTGATCCAGGCACAGTTGGTCCT...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAGCCCCTTTCTCCCATTaGTCCTGGAGGACCAACTGT +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLAPFSH*SWRTNC
Trigger: ACAGTTGGTCCTCCAGGACCAATGGGAGAAAGGGGC...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAAGCACCATCCCGTCCTaGGGTACCATCATTACCAGC +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLSTIPS*GTIITS
Trigger: GCTGGTAATGATGGTACCCCAGGACGGGATGGTGCT...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCCCATCAGGTCCTGGGTaGGAGGGGTGCCCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAPSGPG*EGCPGG
Trigger: GCCTCCTGGGCACCCCTCTCACCCAGGACCTGATGG...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCAGACCCAGGGGGCCCTaGCAAGCCAGGAGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWARPRGP*QARRAR
Trigger: TCTGGCCCTCCTGGCTTGGCAGGGCCCCCTGGGTCT...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGCCTGAGGTCCAGTACTaGCTTGAGGGCCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWPEVQY*LEGQET
Trigger: GGTCTCCTGGCCCTCAAGGCAGTACTGGACCTCAGG...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCACTTCCCAGGTTCTCCTaGGGGCCCTGCAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSLPRFS*GPCRSW
Trigger: CCAGGACCTGCAGGGCCCGCAGGAGAACCTGGGAAG...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAAGGCCCTGGAGCACCTaGCTGACCAGGCACACCTGG +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSRPWST*LTRHTW
Trigger: CCAGGTGTGCCTGGTCAGCCAGGTGCTCCAGGGCCT...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCATCCGGGCTTCCCAGGTaGGCCCTCTGGTCCACGAGA +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSSGLPR*ALWSTR
Trigger: TCTCGTGGACCAGAGGGCCCACCTGGGAAGCCCGGA...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGTCCAGGAGCACCCTGTaGCCCAAGTCTTCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWSRSTL*PKSSPL
Trigger: GAGAGGGGAAGACTTGGGCCACAGGGTGCTCCTGGA...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAAGCTCCAGCAGGGCCTaGAGGCCCAACTCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSSSSRA*RPNSAS
Trigger: GCTGGCAGAGTTGGGCCTCCAGGCCCTGCTGGAGCT...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCACCAGGAGGTCCAATTaGTCCAAGTGGCCCAGGGTT +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSTRRSN*SKWPRV
Trigger: AACCCTGGGCCACTTGGACCAATTGGACCTCCTGGT...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCACCAGGAGGACCCTCTaGTCCTGCTTCTCCTACACT +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSTRRTL*SCFSYT
Trigger: AGTGTAGGAGAAGCAGGACCAGAGGGTCCTCCTGGT...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTGTCCTTGTAAACCCTaGGGTCCTCTTGGGCCAACA +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSCPCKP*GPLGPT
Trigger: TGTTGGCCCAAGAGGACCTCAGGGTTTACAAGGACA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCTCTCCTGGCATGCCCTaGAGACCTGGTGGCCCTGTG +
Preference number: 4 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSSPGMP*RPGGPV
Trigger: CACAGGGCCACCAGGTCTTCAGGGCATGCCAGGAGA...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCGTTTCCTTCCTTTCCTaGAGGACCTACTGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSVSFLS*RTYWSW
Trigger: CCAGGACCAGTAGGTCCTTCAGGAAAGGAAGGAAAC...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAAATGAGGAGAGGTCTTaGTCCCACCCAGTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLNEERS*SHPVCH
Trigger: ATGGCAAACTGGGTGGGAGCAAGACCTCTCCTCATT...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGAAGCCCAGGTTCTCCTaGACGTCCTGGATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWKPRFS*TSWISL
Trigger: CAGGGAGATCCAGGACGTCCAGGAGAACCTGGGCTT...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGGCCCTGTGTCTCCAATaGTCCCAGTTGGACCTGGGT +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWALCLQ*SQLDLG
Trigger: ACCCAGGTCCAACTGGGACCATTGGAGACACAGGGC...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGAGGGCCTGCAGGACCTaGAGGTCCCAAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWRACRT*RSQGTW
Trigger: CCAGGTCCCTTGGGACCTCCAGGTCCTGCAGGCCCT...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTTCCAGCTCGACCAGGTaGTCCTACAGGGCCTCGAGA +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIISSSTR*SYRASR
Trigger: TCTCGAGGCCCTGTAGGACCACCTGGTCGAGCTGGA...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTATCCAATTGGTCCAAGTaGCCCAGGGTTTCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLSNWSK*PRVSFL
Trigger: AAGGAAGGAAACCCTGGGCCACTTGGACCAATTGGA...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTGTCAGGGGATTTGCTaGCCCACCAGGTTTTACGTG +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSCQGIC*PTRFYV
Trigger: CACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGTCTCCCACTCGCCCATaGGAGCCAGGGTCACCACGA +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLSPTRP*EPGSPR
Trigger: TCGTGGTGACCCTGGCTCTCATGGGCGAGTGGGAGA...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGGTTCCAGGGGCACCCTaGGAGCCTGGTAGACCAGCA +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWVPGAP*EPGRPA
Trigger: TGCTGGTCTACCAGGCTCTCAGGGTGCCCCTGGAAC...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCCTCACCAGGAGGTCCTaGGGGTCCCACACCACCTTG +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWALTRRS*GSHTTL
Trigger: CAAGGTGGTGTGGGACCCGCAGGACCTCCTGGTGAG...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCCATTCCAGGATTTCCTaGAAAACCGGAAGAGCCAGG +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSHSRIS*KTGRAR
Trigger: CCTGGCTCTTCCGGTTTTCCAGGAAATCCTGGAATG...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTCCTGCAGAGCCTGTaGGGCCTTTGGCGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAFLQSL*GLWRQV
Trigger: CACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGACCCTGAATACCATGTaGCCCTGGTTCTCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKTLNTM*PWFSLW
Trigger: CCAAAGGGAGAACCAGGGCCACATGGTATTCAGGGT...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGTTCTCCTGGACGTCCTaGATCTCCCTGGCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWFSWTS*ISLASF
Trigger: AAAGGAGGCCAGGGAGATCCAGGACGTCCAGGAGAA...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCCAGACCCCGAGCACCTaGAAGCCCAGGTTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAQTPST*KPRFSW
Trigger: CCAGGAGAACCTGGGCTTCCAGGTGCTCGGGGTCTG...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGTCCAATGGTCCCAGTTaGACCTGGGTTGCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWSNGPS*TWVALW
Trigger: CCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGA...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGACCAGGAGGACCATCTaGACCAGGTTGTCCATCTTC +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKTRRTI*TRLSIF
Trigger: GAAGATGGACAACCTGGTCCAGATGGTCCTCCTGGT...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGAGGACCATTGGAACCTaGAGGTCCTACAGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWRTIGT*RSYRSR
Trigger: CCTGGACCTGTAGGACCTCCAGGTTCCAATGGTCCT...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCAGAGCAGCAGTAAGATaGCCAGGGGGACCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSRAAVR*PGGPGG
Trigger: CCCTCCAGGTCCCCCTGGCCATCTTACTGCTGCTCT...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTTCTCCATCAATTCCCTaGGGACCACGAGGACCAGGT +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIISPSIP*GPRGPG
Trigger: ACCTGGTCCTCGTGGTCCTCAGGGAATTGATGGAGA...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAGGCATGAGTCCTACTTaGCTTCCAAGTCCAGATTTT +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLGMSPT*LPSPDF
Trigger: AAAATCTGGACTTGGAAGTCAAGTAGGACTCATGCC...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCGACCCTGCAGGCCAGTaGACCCTCTGTGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWADPAGQ*TLCGLS
Trigger: AGAAAGGCCACAGAGGGTTCACTGGCCTGCAGGGTC...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTCCCGAGGACCTCTTTTaGCTTCTTCACCAGGTGGAC +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIPEDLF*LLHQVD
Trigger: GTCCACCTGGTGAAGAAGGCAAAAGAGGTCCTCGGG...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGCTGGAGGACCAACTGTaGCTGGATCACCCCGAGGAC +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWLEDQL*LDHPED
Trigger: GTCCTCGGGGTGATCCAGGCACAGTTGGTCCTCCAG...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTCTCCAGTAGGGCCTaGAGGACCTGGAGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSFSSRA*RTWRSQ
Trigger: TTGGGACCTCCAGGTCCTGCAGGCCCTACTGGAGAA...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGCTGCTTCTCCTACACTaGCCCGCACACCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWLLLLH*PAHQEV
Trigger: GACCTCCTGGTGTGCGGGGCAGTGTAGGAGAAGCAG...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGAGGACCCTCTGGTCCTaGTTCTCCTACACTGCCCCG +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLRTLWS*FSYTAP
Trigger: CGGGGCAGTGTAGGAGAAGCAGGACCAGAGGGTCCT...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGGCCCATAGCACCCATTaGACCAGTGGGGCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWAHSTH*TSGASF
Trigger: GAAGCTGGCCCCACTGGTCCAATGGGTGCTATGGGC...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTTCTCCTTTGAAACCTaGAACTCCTGGATCACCCGA +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSFSFET*NSWITR
Trigger: TCGGGTGATCCAGGAGTTCCAGGTTTCAAAGGAGAA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGCACCACTGCTACCTTTaGGGCCTGGAAGGCCCATGC +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLHHCYL*GLEGPC
Trigger: GCATGGGCCTTCCAGGCCCCAAAGGTAGCAGTGGTG...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGGATCCTGCTAGCCCTTaGGGTCCAGGAGACCCAGCA +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLDPASP*GPGDPA
Trigger: TGCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATC...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGTCCTTGTTCACCATTTaGACCAGGAGGTCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: STHAEALHTPSCKLPARKSLFTI*TRRSRK
Trigger: CTTCCTGGACCTCCTGGTCCAAATGGTGAACAAGGA...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGCCCAGCCATCTGAGCTaGAAAAGGCCTGCTCATGCC +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLPSHLS*KRPAHA
Trigger: GGCATGAGCAGGCCTTTTTCAGCTCAGATGGCTGGG...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCACTGGAAAACCACGATTaGCAGGAGCGCCCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSLENHD*QERPFL
Trigger: GAGAAAGGGGCGCTCCTGGCAATCGTGGTTTTCCAG...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACAGGGCCTGGAGGTCCCTaGTCTCCTCTTTCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETGPGGP*SPLSPA
Trigger: AGCTGGGGAAAGAGGAGAGCAGGGACCTCCAGGCCC...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGCTCTTTCTCCTGGCATaGCCTGAAGACCTGGTGGCC +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLLFLLA*PEDLVA
Trigger: GGCCACCAGGTCTTCAGGGCATGCCAGGAGAAAGAG...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGCGAAAGGACCAGGAATaGCAGCACTTCCTTGTTCAC +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWRKDQE*QHFLVH
Trigger: GTGAACAAGGAAGTGCTGGCATTCCTGGTCCTTTCG...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTCCTGGCATTCCTCTTaGTCCCAGAGGGCCCATAGC +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWASWHSS*SQRAHS
Trigger: GCTATGGGCCCTCTGGGACCAAGAGGAATGCCAGGA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTGAAACCTGGAACTCCTaGATCACCCGATTGTCCTCG +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIETWNS*ITRLSS
Trigger: CGAGGACAATCGGGTGATCCAGGAGTTCCAGGTTTC...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGACCTGGGTTGCCCTTTaGACCATCAGGGCCATGTCC +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLTWVAL*TIRAMS
Trigger: GGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGT...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCGGTCCCAGTTGGACCTaGGTTGCCCTTTGGACCATC +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAGPSWT*VALWTI
Trigger: GATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACC...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTCCTCTTTGCCCAGTaGTACCAGCGGGACCAGGAG +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAFLFAQ*YQRDQE
Trigger: CTCCTGGTCCCGCTGGTACCACTGGGCAAAGAGGAA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGCATCATAGTGTCCCATaGTATCACCAAGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWHHSVP*YHQEQQ
Trigger: CTGCTGCTCTTGGTGATATCATGGGACACTATGATG...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCAGGGCCAGAGGTTCCTaGAGAGCCTGTGGGGCCTTT +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFRARGS*RACGAF
Trigger: AAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCT...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAAGGGCCAGGTGTTCCTaGAATTCCTCTTTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSRARCS*NSSFSW
Trigger: CCAGGAGAAAGAGGAATTGCAGGAACACCTGGCCCT...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTTGCCCCGTCATTTCCTaGTGTTCCTTCAGCACCTTT +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIICPVIS*CSFSTF
Trigger: AAAGGTGCTGAAGGAACAGCAGGAAATGACGGGGCA...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGACAGTTGAGCACCTCTaGGCACTCTATCTTGTCACA +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWTVEHL*ALYLVT
Trigger: TGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGT...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGTTTCCAGGCATACCGTaGGCACCCCGTTTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLFPGIP*APRFPG
Trigger: TCCTGGAAAACGGGGTGCCCACGGTATGCCTGGAAA...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCACCAGCCGGACCTTCTaGCCCAGGTTCTCCTACAGG +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFTSRTF*PRFSYR
Trigger: CCTGTAGGAGAACCTGGGCCAGAAGGTCCGGCTGGT...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGTTTGTTTGTGTCATCTaGAGCTGCCTGGTCTTCCGT +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWFVCVI*SCLVFR
Trigger: ACGGAAGACCAGGCAGCTCCAGATGACACAAACAAA...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTACTCTGCTTTGTGGGATaGCAAAGCTTTAAATCATCA +
Preference number: 4 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLLCFVG*QSFKSS
Trigger: TGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAG...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCGGACCAATGGGACCCTaGATACCATGTGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFGPMGP*IPCGPG
Trigger: ACCAGGGCCACATGGTATTCAGGGTCCCATTGGTCC...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGTTCCAAGGTCACCACTaGTACCTTTGGGGCCTGGAA +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWFQGHH*YLWGLE
Trigger: TTCCAGGCCCCAAAGGTAGCAGTGGTGACCTTGGAA...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTCATTCTCTTGTTCCTaGGCTTTTATTGAGACACAG +
Preference number: 4 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSSFSCS*AFIETQ
Trigger: CTGTGTCTCAATAAAAGCCCAGGAACAAGAGAATGA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCTGGTCCTACTTTTCCTaGTGTACCCGCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFWSYFS*CTRWAR
Trigger: CCTGGCCCAGCGGGTACACCAGGAAAAGTAGGACCA...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGCTCCTACAGGACCATTaGAACCTGGAGGTCCTACAG +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWLLQDH*NLEVLQ
Trigger: CTGTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAG...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACAAGGGCCTCGAGAACCTaGCTCTCCTCTTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETRASRT*LSSLSC
Trigger: GCAGGACAAAGAGGAGAGCCAGGTTCTCGAGGCCCT...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTTCACAGACACAGATCTaGCATGGAGAAGGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIISQTQI*HGEGFQ
Trigger: TTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGA...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTGATTGCATCTTCAGCTaGTCCCTGGTTAGGATCAAT +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIDCIFS*SLVRIN
Trigger: ATTGATCCTAACCAGGGATCAGCTGAAGATGCAATC...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGACCCTTAGCACCAGGTaGTCCAATTTCACCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLTLSTR*SNFTFG
Trigger: CCCAAAGGTGAAATTGGAGCACCTGGTGCTAAGGGT...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACAACCATCAGTCCCCACTaGACCAGGAAGACCCTGAGA +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETTISPH*TRKTLR
Trigger: TCTCAGGGTCTTCCTGGTGCAGTGGGGACTGATGGT...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACACTCTCCTCTTTGTCCTaGATCTCCAGGGGCACCAAC +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETLSSLS*ISRGTN
Trigger: GTTGGTGCCCCTGGAGATGCAGGACAAAGAGGAGAG...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR GCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCATATTGTCAGGGGATTTaGTGGCCCACCAGGTTTTAC +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSYCQGI*WPTRFY
Trigger: GTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATA...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCCATGCCCTGAAGACCTaGTGGCCCTGTGTCTCCAAT +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFHALKT*WPCVSN
Trigger: ATTGGAGACACAGGGCCACCAGGTCTTCAGGGCATG...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGAATTCCTCTTTCTCCTaGCATGCCCTGAAGACCTGG +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWNSSFS*HALKTW
Trigger: CCAGGTCTTCAGGGCATGCCAGGAGAAAGAGGAATT...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAACCAACAGCTCCAGTTaGACCATTTTCACCACGAGA +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSTNSSS*TIFTTR
Trigger: TCTCGTGGTGAAAATGGTCCAACTGGAGCTGTTGGT...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTCACCGCTCTGCTTTGTaGGATGGCAAAGCTTTAAAT +
Preference number: 4 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIHRSAL*DGKALN
Trigger: ATTTAAAGCTTTGCCATCCCACAAAGCAGAGCGGTG...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCCCTTTGTGTCCTCTGTaGCCTTTCAAGCCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFPLCPL*PFKPGR
Trigger: TCTCCCTGGCTTGAAAGGTCACAGAGGACACAAAGG...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGTCTCCATATGTGAACTaGGATCCTCTATTCATGTCA +
Preference number: 4 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWSPYVN*DPLFMS
Trigger: TGACATGAATAGAGGATCTCAGTTCACATATGGAGA...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACACCCAAGAGGACCCATTaGTCCAGGTTTTCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETPKRTH*SRFSRH
Trigger: ATGCCTGGAAAACCTGGACCAATGGGTCCTCTTGGG...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCCAGTCCAGTTATCCCTaGCTCTCCTCTTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFQSSYP*LSSFSR
Trigger: CCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTG...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCATCAAGGCCAAATTCCTaGTCTGCATTGCCAATATCC +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSSRPNS*SALPIS
Trigger: GGATATTGGCAATGCAGACCAGGAATTTGGCCTTGA...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CAA 72 bp ATGAACTTTAAACAGTCACAGTTCTTGTGGTGGTCATaGATGGTAGTGCTCATTGTCGATATGTCTGGGCTT +
Preference number: 4 (lower is better)
Translates to: MNFKQSQFLWWS*MVVLIVDMSGL
Trigger: AAGCCCAGACATATCGACAATGAGCACTACCATCAATGACCACCACAAGAACTGTGACTGTTTAAAGTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
3UTR CAA 72 bp ACTAGCCTGAGTTTTCTAACGCATAGACTGTCTTCATaGATGTCAACATGCCTTTGCAGGCAATGTTACAGA +
Preference number: 4 (lower is better)
Translates to: TSLSFLTHRLSS*MSTCLCRQCYR
Trigger: TCTGTAACATTGCCTGCAAAGGCATGTTGACATCAATGAAGACAGTCTATGCGTTAGAAAACTCAGGCTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp GATCTTAGTTTTCACTCCTGGAAACTAAAAGGACCTAATATGTTCAAAGGATTCGACCAGCTTCTCCTTTaGAACCTGGAACTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: DLSFHSWKLKGPNMFKGFDQLLL*NLELLD
Trigger: ATCCAGGAGTTCCAGGTTTCAAAGGAGAAGCTGGTC...GAATCCTTTGAACATATTAGGTCCTTTTAGTTTCCAGGAGTGAAAACTAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTTACGTGGAACACTaGCTGGGTTTGCTGAAATAC +
Preference number: 4 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSFYVEH*LGLLKY
Trigger: GTATTTCAGCAAACCCAGCCAGTGTTCCACGTAAAA...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGATAAAACAGAAAGAATaGGGAGAGGTCTTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWIKQKE*GEVLLP
Trigger: TGGGAGCAAGACCTCTCCTCATTCTTTCTGTTTTAT...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGGGTAATCTCCATATGTaGACTGAGATCCTCTATTCA +
Preference number: 4 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLGNLHM*TEILYS
Trigger: TGAATAGAGGATCTCAGTTCACATATGGAGATTACC...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR TCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTAGAGCAGGTGTCTTaGAGAACTGTGTATCTGAAT +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWALEQVS*RTVYLN
Trigger: ATTCAGATACACAGTTCTTCAAGACACCTGCTCTAA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACACTCCAATTTCACCTTTaGGGCCTTCAAGACCTTTGT +
Preference number: 4 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETLQFHL*GLQDLC
Trigger: ACAAAGGTCTTGAAGGCCCCAAAGGTGAAATTGGAG...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTCTTCAGCTGATCCCTaGTTAGGATCAATCCAATAT +
Preference number: 4 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWASSADP*LGSIQY
Trigger: ATATTGGATTGATCCTAACCAGGGATCAGCTGAAGA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CCA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCATTACATGAAACAAACTaGCCCAATATCAAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSLHETN*PNIKAK
Trigger: TTTGGCCTTGATATTGGGCCAGTTTGTTTCATGTAA...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp GGGGCCCTGCCAAGCCAGGAGGGCCAGAGGTTCCTGCAGAGCCTGTaGGGCCTTTGGCGCCAGGTGTACCATCAGTCCCCACTGCACCAG +
Preference number: 5 (lower is better)
Translates to: GALPSQEGQRFLQSL*GLWRQVYHQSPLHQ
Trigger: CTGGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGGCAGGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp CCAAGCCAGGAGGGCCAGAGGTTCCTGCAGAGCCTGTGGGGCCTTTaGCGCCAGGTGTACCATCAGTCCCCACTGCACCAGGAAGACCCT +
Preference number: 5 (lower is better)
Translates to: PSQEGQRFLQSLWGL*RQVYHQSPLHQEDP
Trigger: AGGGTCTTCCTGGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp GGGGTCTCCACGGTCACCCCGTTCTCCAACAGCACCATCCCGTCCTaGGGTACCATCATTACCAGCCGGACCTTCTGGCCCAGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: GVSTVTPFSNSTIPS*GTIITSRTFWPRFS
Trigger: GGAGAACCTGGGCCAGAAGGTCCGGCTGGTAATGATGGTACCCCAGGACGGGATGGTGCTGTTGGAGAACGGGGTGACCGTGGAGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp GGAACACCATGTGGACCATGGGGGCCAGGTGATCCTGCTAGCCCTTaGGGTCCAGGAGACCCAGCATCTCCCTTCTGTCCTGGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: GTPCGPWGPGDPASP*GPGDPASPFCPGSP
Trigger: TGGAGAGCCAGGACAGAAGGGAGATGCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCATGGTCCACATGGTGTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp TGGCCCTGTGTCTCCAATGGTCCCAGTTGGACCTGGGTTGCCCTTTaGACCATCAGGGCCATGTCCTCCAGCCATGCCTTTCTCCCCAGG +
Preference number: 5 (lower is better)
Translates to: WPCVSNGPSWTWVAL*TIRAMSSSHAFLPR
Trigger: CCTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp CTCTCCTGGCATTCCTCTTGGTCCCAGAGGGCCCATAGCACCCATTaGACCAGTGGGGCCAGCTTCACCCTTAGCACCAGGTGCTCCAAT +
Preference number: 5 (lower is better)
Translates to: LSWHSSWSQRAHSTH*TSGASFTLSTRCSN
Trigger: ATTGGAGCACCTGGTGCTAAGGGTGAAGCTGGCCCCACTGGTCCAATGGGTGCTATGGGCCCTCTGGGACCAAGAGGAATGCCAGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp ATCTGGACCAGGTTGTCCATCTTCTCCTGGGTCCCCTTTATCTCCTaGGCTACCAGGTGGGCCAGCTGGTCCTCTATCTCCCACTCGCCC +
Preference number: 5 (lower is better)
Translates to: IWTRLSIFSWVPFIS*ATRWASWSSISHSP
Trigger: GGGCGAGTGGGAGATAGAGGACCAGCTGGCCCACCTGGTAGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCTGGTCCAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp AGCCGGACCTTCTGGCCCAGGTTCTCCTACAGGACCATTGGAACCTaGAGGTCCTACAGGTCCAGGGGGACCTTTATCTCCTGTCGCACC +
Preference number: 5 (lower is better)
Translates to: SRTFWPRFSYRTIGT*RSYRSRGTFISCRT
Trigger: GGTGCGACAGGAGATAAAGGTCCCCCTGGACCTGTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGAACCTGGGCCAGAAGGTCCGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp TGCTTCTCCTGGTTTTCCAAGGTCACCACTGCTACCTTTGGGGCCTaGAAGGCCCATGCTTCCAGGCTGTCCTCTGATCCCAATGGAGCC +
Preference number: 5 (lower is better)
Translates to: CFSWFSKVTTATFGA*KAHASRLSSDPNGA
Trigger: GGCTCCATTGGGATCAGAGGACAGCCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCTTGGAAAACCAGGAGAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp ATGTCCTCCAGCCATGCCTTTCTCCCCAGGCAGTCCAGTTATCCCTaGCTCTCCTCTTTCTCCAGGATTCCCTCTTTCTCCCCGAGGTCC +
Preference number: 5 (lower is better)
Translates to: MSSSHAFLPRQSSYP*LSSFSRIPSFSPRS
Trigger: GGACCTCGGGGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTGGACTGCCTGGGGAGAAAGGCATGGCTGGAGGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp AGGTGTTCCTGCAATTCCTCTTTCTCCTGGCATGCCCTGAAGACCTaGTGGCCCTGTGTCTCCAATGGTCCCAGTTGGACCTGGGTTGCC +
Preference number: 5 (lower is better)
Translates to: RCSCNSSFSWHALKT*WPCVSNGPSWTWVA
Trigger: GGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCACCAGGTCTTCAGGGCATGCCAGGAGAAAGAGGAATTGCAGGAACACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 90 bp GTCCTGGAGGACCAACTGTGCCTGGATCACCCCGAGGACCTCTTTTaGCTTCTTCACCAGGTGGACCAATGGGACCCTGAATACCATGTG +
Preference number: 5 (lower is better)
Translates to: VLEDQLCLDHPEDLF*LLHQVDQWDPEYHV
Trigger: CACATGGTATTCAGGGTCCCATTGGTCCACCTGGTGAAGAAGGCAAAAGAGGTCCTCGGGGTGATCCAGGCACAGTTGGTCCTCCAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGCCACGAGAACCAGGATaGCCACGGGAGCCAGGAGGG +
Preference number: 5 (lower is better)
Translates to: STHAEALHTPSCKLPARKPREPG*PREPGG
Trigger: CCCTCCTGGCTCCCGTGGCAATCCTGGTTCTCGTGG...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGCGCCCCTTTCTCCCATaGGTCCTGGAGGACCAACTG +
Preference number: 5 (lower is better)
Translates to: STHAEALHTPSCKLPARKRPFLP*VLEDQL
Trigger: CAGTTGGTCCTCCAGGACCAATGGGAGAAAGGGGCG...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGACCTGGCTCTCCTCTTaGTCCTGCATCTCCAGGGGC +
Preference number: 5 (lower is better)
Translates to: STHAEALHTPSCKLPARKTWLSS*SCISRG
Trigger: GCCCCTGGAGATGCAGGACAAAGAGGAGAGCCAGGT...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 90 bp CACCGCTCTGCTTTGTGGGATGGCAAAGCTTTAAATCATCACAAGTaGGGGCTGGGTGTTTCTTGGAACCATCAGGGCTACGCATGGTTT +
Preference number: 5 (lower is better)
Translates to: HRSALWDGKALNHHK*GLGVSWNHQGYAWF
Trigger: AAACCATGCGTAGCCCTGATGGTTCCAAGAAACACCCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAGCGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 90 bp TATTCATGTCAAGACCGTACCACACAGGCTTATTGTCAGGGGATTTaGTGGCCCACCAGGTTTTACGTGGAACACTGGCTGGGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: YSCQDRTTQAYCQGI*WPTRFYVEHWLGLL
Trigger: CAGCAAACCCAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp GCACTCCCCAGTGGGTGTTATAGGATTGGCACAGTTGAGCACCTCTaGGCACTCTATCTTGTCACAAAGAATGGCACCATTGTCACAGAC +
Preference number: 5 (lower is better)
Translates to: ALPSGCYRIGTVEHL*ALYLVTKNGTIVTD
Trigger: GTCTGTGACAATGGTGCCATTCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp TCATGTCAAGACCGTACCACACAGGCTTATTGTCAGGGGATTTGCTaGCCCACCAGGTTTTACGTGGAACACTGGCTGGGTTTGCTGAAA +
Preference number: 5 (lower is better)
Translates to: SCQDRTTQAYCQGIC*PTRFYVEHWLGLLK
Trigger: TTTCAGCAAACCCAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAGGCCTCGGTCCCCTCTaGGTCCTTGTGATCCTGGGG +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSGLGPL*VLVILG
Trigger: CCCCAGGATCACAAGGACCAAGAGGGGACCGAGGCC...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCCTCCCTGAGCACCCTTaGGTCCAGGTAAACCATCAG +
Preference number: 5 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSLPEHP*VQVNHQ
Trigger: CTGATGGTTTACCTGGACCAAAGGGTGCTCAGGGAG...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp CTTCAGGGTAACATGGATCCCAGGGTCTGTTTTGTTTGTGTCATCTaGAGCTGCCTGGTCTTCCGTAAACTCTGGAAGTGGATCTGGCAT +
Preference number: 5 (lower is better)
Translates to: LQGNMDPRVCFVCVI*SCLVFRKLWKWIWH
Trigger: ATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGGGATCCATGTTACCCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGCCCCGAGGACCTCTTTaGCCTTCTTCACCAGGTGGA +
Preference number: 5 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWPRGPL*PSSPGG
Trigger: TCCACCTGGTGAAGAAGGCAAAAGAGGTCCTCGGGG...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTGACCTGGAAGACCCCTaGCCCCGTCATTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: IHDQSSMWALSFGMAQIIDLEDP*PRHFLL
Trigger: CAGCAGGAAATGACGGGGCAAGGGGTCTTCCAGGTC...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCCCAGTTGGACCTGGGTaGCCCTTTGGACCATCAGGG +
Preference number: 5 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSPVGPG*PFGPSG
Trigger: CCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGG...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATACATGATCAAAGTTCTATGTGGGCCTTGTCCTTTGGGATGGCCCAGATTATTCTCCAATGGTCCCAGTaGGACCTGGGTTGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: IHDQSSMWALSFGMAQIILQWSQ*DLGCPL
Trigger: CAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAG...AATAATCTGGGCCATCCCAAAGGACAAGGCCCACATAGAACTTTGATCATGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGAAATCTATCCCAGCTTGCAGAGATGAGGTAGGTCATGCTAAGAAATGTTGGACCATCTGGACCAGGTaGTCCATCTTCTCCTGGGTC +
Preference number: 5 (lower is better)
Translates to: RKSIPACRDEVGHAKKCWTIWTR*SIFSWV
Trigger: GACCCAGGAGAAGATGGACAACCTGGTCCAGATGGT...CCAACATTTCTTAGCATGACCTACCTCATCTCTGCAAGCTGGGATAGATTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TCAACACATGCTGAGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGTCTCCATTGTCACCCTaGTCACCTCGAGGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: STHAEALHTPSCKLPARKSPLSP*SPRGPC
Trigger: ACAAGGACCTCGAGGTGACAAGGGTGACAATGGAGA...CTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCTCAGCATGTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCACGGGCTGGGTGTTTCTaGGAACCATCAGGGCTACGC +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSRAGCF*EPSGLR
Trigger: GCGTAGCCCTGATGGTTCCAAGAAACACCCAGCCCG...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp GTTTGTGTCATCTGGAGCTGCCTGGTCTTCCGTAAACTCTGGAAGTaGATCTGGCATGTTCTCATCATAGTGTCCCATGATATCACCAAG +
Preference number: 5 (lower is better)
Translates to: VCVIWSCLVFRKLWK*IWHVLIIVSHDITK
Trigger: CTTGGTGATATCATGGGACACTATGATGAGAACATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGAACCCTGAGGTCCTCTaGGGCCAACAGGACCCACAG +
Preference number: 5 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLNPEVL*GQQDPQ
Trigger: CTGTGGGTCCTGTTGGCCCAAGAGGACCTCAGGGTT...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCACCTGGAAAACCACGATaGCCAGGAGCGCCCCTTTCT +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSPGKPR*PGAPLS
Trigger: AGAAAGGGGCGCTCCTGGCAATCGTGGTTTTCCAGG...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCGACCTGGGTTGCCCTTaGGACCATCAGGGCCATGTC +
Preference number: 5 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWADLGCP*DHQGHV
Trigger: GACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTC...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCGAACACTGGCTGGGTTaGCTGAAATACATGTCTCTC +
Preference number: 5 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSEHWLG*LKYMSL
Trigger: GAGAGACATGTATTTCAGCAAACCCAGCCAGTGTTC...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCTTATTGTCAGGGGATTaGCTGGCCCACCAGGTTTTA +
Preference number: 5 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSLLSGD*LAHQVL
Trigger: TAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAA...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ACAATAAGAGGACACAGGGGGCATTACTCTCTACTTTTCAGACTGCAGCCAAGCAGGCATGAGTCCTACTaGACTTCCAAGTCCAGATTT +
Preference number: 5 (lower is better)
Translates to: TIRGHRGHYSLLFRLQPSRHESY*TSKSRF
Trigger: AAATCTGGACTTGGAAGTCAAGTAGGACTCATGCCT...GCTTGGCTGCAGTCTGAAAAGTAGAGAGTAATGCCCCCTGTGTCCTCTTATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCATCCAACAATTCCTCTTaGCCCAGTGGTACCAGCGGG +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSSNNSS*PSGTSG
Trigger: CCCGCTGGTACCACTGGGCAAAGAGGAATTGTTGGA...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 90 bp TGTTTTGTTTGTGTCATCTGGAGCTGCCTGGTCTTCCGTAAACTCTaGAAGTGGATCTGGCATGTTCTCATCATAGTGTCCCATGATATC +
Preference number: 5 (lower is better)
Translates to: CFVCVIWSCLVFRKL*KWIWHVLIIVSHDI
Trigger: GATATCATGGGACACTATGATGAGAACATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp GGTGGTCAGGCACTTCAGATCGTATGTACAAAGCTGATGCAGGACCAGCCATTAATACATCTGTCCATGTaGAGTACAGGCTATTTCTTC +
Preference number: 5 (lower is better)
Translates to: GGQALQIVCTKLMQDQPLIHLSM*STGYFF
Trigger: GAAGAAATAGCCTGTACTCAACATGGACAGATGTAT...TAATGGCTGGTCCTGCATCAGCTTTGTACATACGATCTGAAGTGCCTGACCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CGTCTACTAAATTGTGAACAAAAACTACCAGGAGATCTTAGTTTTCACTCCTGGTCTCCTACAGGACCATaGGAACCTGGAGGTCCTACA +
Preference number: 5 (lower is better)
Translates to: RLLNCEQKLPGDLSFHSWSPTGP*EPGGPT
Trigger: TGTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGA...CCAGGAGTGAAAACTAAGATCTCCTGGTAGTTTTTGTTCACAATTTAGTAGACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTCACCTCTGTCTCCATaGTCACCCTTGTCACCTCGA +
Preference number: 5 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWASPLSP*SPLSPR
Trigger: TCGAGGTGACAAGGGTGACAATGGAGACAGAGGTGA...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCGCTCCAATTTCACCTTaGGGGCCTTCAAGACCTTTG +
Preference number: 5 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWAAPISP*GPSRPL
Trigger: CAAAGGTCTTGAAGGCCCCAAAGGTGAAATTGGAGC...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACATCCCAAGAGGACCCATaGGTCCAGGTTTTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETSQEDP*VQVFQA
Trigger: TGCCTGGAAAACCTGGACCAATGGGTCCTCTTGGGA...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp ATGCATTTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCAATGCCAGCACTTCCTaGTTCACCATTTGGACCAGG +
Preference number: 5 (lower is better)
Translates to: MHLIRCFAEIHDQSSMWANASTS*FTIWTR
Trigger: CCTGGTCCAAATGGTGAACAAGGAAGTGCTGGCATT...GGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAAATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CTTTGGGATGGCCCAGATTATTTAAGTAAGAAACAACAATGGAGCAAACAACTGCAGGGTCTGTTTTGTTaGTGTCATCTGGAGCTGCCT +
Preference number: 5 (lower is better)
Translates to: LWDGPDYLSKKQQWSKQLQGLFC*CHLELP
Trigger: AGGCAGCTCCAGATGACACAAACAAAACAGACCCTG...CAGTTGTTTGCTCCATTGTTGTTTCTTACTTAAATAATCTGGGCCATCCCAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAATCCCAGGGTCTGTTTaGTTTGTGTCATCTGGAGCT +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSIPGSV*FVSSGA
Trigger: AGCTCCAGATGACACAAACAAAACAGACCCTGGGAT...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp TTAATTCGATGCTTTGCAGAGATACATGATCAAAGTTCTATGTGGGCCTTGTCCATTCACCGCTCTGCTTaGTGGGATGGCAAAGCTTTA +
Preference number: 5 (lower is better)
Translates to: LIRCFAEIHDQSSMWALSIHRSA*WDGKAL
Trigger: TAAAGCTTTGCCATCCCACAAAGCAGAGCGGTGAAT...GGACAAGGCCCACATAGAACTTTGATCATGTATCTCTGCAAAGCATCGAATTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp AGGCTTTACATACCCCATCATGTAAGCTACCTGCTAGGAAGAAGAATTTTCTCAGTTCCTGGGCTTTTATaGAGACACAGTACCCTAATA +
Preference number: 5 (lower is better)
Translates to: RLYIPHHVSYLLGRRIFSVPGLL*RHSTLI
Trigger: TATTAGGGTACTGTGTCTCAATAAAAGCCCAGGAAC...TGAGAAAATTCTTCTTCCTAGCAGGTAGCTTACATGATGGGGTATGTAAAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACAAATTCCTGGTCTGCATaGCCAATATCCACAGGACCA +
Preference number: 5 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETNSWSA*PISTGP
Trigger: TGGTCCTGTGGATATTGGCAATGCAGACCAGGAATT...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 90 bp TCTATCTTGTCACAAAGAATGGCACCATTGTCACAGACACAGATCTaGCATGGAGAAGGTTTCCAAATGTCTCTATTTAAATACATCTGT +
Preference number: 5 (lower is better)
Translates to: SILSQRMAPLSQTQI*HGEGFQMSLFKYIC
Trigger: ACAGATGTATTTAAATAGAGACATTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGTGACAAGATAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS-3UTR CAA 90 bp CTCTCAAATGGGATGTTTAACAGTTCTGTGTTCACAAATAGCATTGATGAAACATCTGCGAGGCTTCTTTaGATAAAAGACGCAAAAAGG +
Preference number: 5 (lower is better)
Translates to: LSNGMFNSSVFTNSIDETSARLL*IKDAKR
Trigger: CCTTTTTGCGTCTTTTATCAAAAGAAGCCTCGCAGA...TGTTTCATCAATGCTATTTGTGAACACAGAACTGTTAAACATCCCATTTGAGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp GCCAAGCCAGGAGGGCCAGAGGTTCCTGCAGAGCCTGTGGGGCCTTaGGCGCCAGGTGTACCATCAGTCCCCACTGCACCAGGAAGACCC +
Preference number: 6 (lower is better)
Translates to: AKPGGPEVPAEPVGP*APGVPSVPTAPGRP
Trigger: GGGTCTTCCTGGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp GAGGGCCAGAGGTTCCTGCAGAGCCTGTGGGGCCTTTaGCGCCAGGTGTACCATCAGTCCCCACTGCACCAG +
Preference number: 6 (lower is better)
Translates to: EGQRFLQSLWGL*RQVYHQSPLHQ
Trigger: CTGGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp GGAGGGCCAGAGGTTCCTGCAGAGCCTGTGGGGCCTTaGGCGCCAGGTGTACCATCAGTCCCCACTGCACCA +
Preference number: 6 (lower is better)
Translates to: GGPEVPAEPVGP*APGVPSVPTAP
Trigger: TGGTGCAGTGGGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AGTAGGGCCTGCAGGACCTGGAGGTCCCAAGGGACCTaGAAGACCCCTTGCCCCGTCATTTCCTGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: SRACRTWRSQGT*KTPCPVISCCS
Trigger: GGAACAGCAGGAAATGACGGGGCAAGGGGTCTTCCAGGTCCCTTGGGACCTCCAGGTCCTGCAGGCCCTACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp TGTGGACCATGGGGGCCAGGTGATCCTGCTAGCCCTTaGGGTCCAGGAGACCCAGCATCTCCCTTCTGTCCT +
Preference number: 6 (lower is better)
Translates to: CGPWGPGDPASP*GPGDPASPFCP
Trigger: AGGACAGAAGGGAGATGCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCATGGTCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp CGCACCAGTTGGTCCTACTTTTCCTGGTGTACCCGCTaGGCCAGGAAGGCCAGGCATTCCTCGTTCCCCACG +
Preference number: 6 (lower is better)
Translates to: RTSWSYFSWCTR*ARKARHSSFPT
Trigger: CGTGGGGAACGAGGAATGCCTGGCCTTCCTGGCCCAGCGGGTACACCAGGAAAAGTAGGACCAACTGGTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp ACGGTCACCCCGTTCTCCAACAGCACCATCCCGTCCTaGGGTACCATCATTACCAGCCGGACCTTCTGGCCC +
Preference number: 6 (lower is better)
Translates to: TVTPFSNSTIPS*GTIITSRTFWP
Trigger: GGGCCAGAAGGTCCGGCTGGTAATGATGGTACCCCAGGACGGGATGGTGCTGTTGGAGAACGGGGTGACCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp GTGGCCCTGTGTCTCCAATGGTCCCAGTTGGACCTGGGTTGCCCTTaGGACCATCAGGGCCATGTCCTCCAGCCATGCCTTTCTCCCCAG +
Preference number: 6 (lower is better)
Translates to: VALCLQWSQLDLGCP*DHQGHVLQPCLSPQ
Trigger: CTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp GGTGTACCATCAGTCCCCACTGCACCAGGAAGACCCTaGGAGCCAGCTGGACCAGGTGGCCCAGTTTCACCT +
Preference number: 6 (lower is better)
Translates to: GVPSVPTAPGRP*EPAGPGGPVSP
Trigger: AGGTGAAACTGGGCCACCTGGTCCAGCTGGCTCTCAGGGTCTTCCTGGTGCAGTGGGGACTGATGGTACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp TGGTGGCCCTGTGTCTCCAATGGTCCCAGTTGGACCTaGGTTGCCCTTTGGACCATCAGGGCCATGTCCTCC +
Preference number: 6 (lower is better)
Translates to: WWPCVSNGPSWT*VALWTIRAMSS
Trigger: GGAGGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp CTACCGCCTTTCAGTCCAGGAACACCATGTGGACCATaGGGGCCAGGTGATCCTGCTAGCCCTTGGGGTCCA +
Preference number: 6 (lower is better)
Translates to: LPPFSPGTPCGP*GPGDPASPWGP
Trigger: TGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCATGGTCCACATGGTGTTCCTGGACTGAAAGGCGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp TGTACCCGCTGGGCCAGGAAGGCCAGGCATTCCTCGTTCCCCACGTaGTCCGGGCATTCCAACAATTCCTCTTTGCCCAGTGGTACCAGC +
Preference number: 6 (lower is better)
Translates to: CTRWARKARHSSFPT*SGHSNNSSLPSGTS
Trigger: GCTGGTACCACTGGGCAAAGAGGAATTGTTGGAATGCCCGGACAACGTGGGGAACGAGGAATGCCTGGCCTTCCTGGCCCAGCGGGTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AAGACCTGGTGGCCCTGTGTCTCCAATGGTCCCAGTTaGACCTGGGTTGCCCTTTGGACCATCAGGGCCATG +
Preference number: 6 (lower is better)
Translates to: KTWWPCVSNGPS*TWVALWTIRAM
Trigger: CATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAGACACAGGGCCACCAGGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp TTTCATCCAGCCCAGCCATCTGAGCTGAAAAAGGCCTaGTCATGCCATCAGGTCCTGGGTGAGAGGGGTGCC +
Preference number: 6 (lower is better)
Translates to: FHPAQPSELKKA*SCHQVLGERGA
Trigger: GGCACCCCTCTCACCCAGGACCTGATGGCATGAGCAGGCCTTTTTCAGCTCAGATGGCTGGGCTGGATGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp TGGTTTTCCAAGGTCACCACTGCTACCTTTGGGGCCTaGAAGGCCCATGCTTCCAGGCTGTCCTCTGATCCC +
Preference number: 6 (lower is better)
Translates to: WFSKVTTATFGA*KAHASRLSSDP
Trigger: GGGATCAGAGGACAGCCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCTTGGAAAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp CTTCTCCTGGTTTTCCAAGGTCACCACTGCTACCTTTaGGGCCTGGAAGGCCCATGCTTCCAGGCTGTCCTC +
Preference number: 6 (lower is better)
Translates to: LLLVFQGHHCYL*GLEGPCFQAVL
Trigger: GAGGACAGCCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCTTGGAAAACCAGGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp GTCTCCAATGGTCCCAGTTGGACCTGGGTTGCCCTTTaGACCATCAGGGCCATGTCCTCCAGCCATGCCTTT +
Preference number: 6 (lower is better)
Translates to: VSNGPSWTWVAL*TIRAMSSSHAF
Trigger: AAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAACTGGGACCATTGGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AGGTTGTCCATCTTCTCCTGGGTCCCCTTTATCTCCTaGGCTACCAGGTGGGCCAGCTGGTCCTCTATCTCC +
Preference number: 6 (lower is better)
Translates to: RLSIFSWVPFIS*ATRWASWSSIS
Trigger: GGAGATAGAGGACCAGCTGGCCCACCTGGTAGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp TGGGCCAGGAAGGCCAGGCATTCCTCGTTCCCCACGTaGTCCGGGCATTCCAACAATTCCTCTTTGCCCAGT +
Preference number: 6 (lower is better)
Translates to: WARKARHSSFPT*SGHSNNSSLPS
Trigger: ACTGGGCAAAGAGGAATTGTTGGAATGCCCGGACAACGTGGGGAACGAGGAATGCCTGGCCTTCCTGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp GACCAACTGTGCCTGGATCACCCCGAGGACCTCTTTTaGCTTCTTCACCAGGTGGACCAATGGGACCCTGAA +
Preference number: 6 (lower is better)
Translates to: DQLCLDHPEDLF*LLHQVDQWDPE
Trigger: TTCAGGGTCCCATTGGTCCACCTGGTGAAGAAGGCAAAAGAGGTCCTCGGGGTGATCCAGGCACAGTTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp GTCCAGGTAAACCATCAGACCCTGGAAAACCACGATTaGCAGGAGCGCCCCTTTCTCCCATTGGTCCTGGAG +
Preference number: 6 (lower is better)
Translates to: VQVNHQTLENHD*QERPFLPLVLE
Trigger: CTCCAGGACCAATGGGAGAAAGGGGCGCTCCTGGCAATCGTGGTTTTCCAGGGTCTGATGGTTTACCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp CAAGGGACCTGGAAGACCCCTTGCCCCGTCATTTCCTaGTGTTCCTTCAGCACCTTTCTCTCCTATGCCACC +
Preference number: 6 (lower is better)
Translates to: QGTWKTPCPVIS*CSFSTFLSYAT
Trigger: GGTGGCATAGGAGAGAAAGGTGCTGAAGGAACAGCAGGAAATGACGGGGCAAGGGGTCTTCCAGGTCCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp TTCTGGCCCAGGTTCTCCTACAGGACCATTGGAACCTaGAGGTCCTACAGGTCCAGGGGGACCTTTATCTCC +
Preference number: 6 (lower is better)
Translates to: FWPRFSYRTIGT*RSYRSRGTFIS
Trigger: GGAGATAAAGGTCCCCCTGGACCTGTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGAACCTGGGCCAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp GTCCTGGAGGACCTCTTGGACCGAAAGGACCAGGAATaGCAGCACTTCCTTGTTCACCATTTGGACCAGGAG +
Preference number: 6 (lower is better)
Translates to: VLEDLLDRKDQE*QHFLVHHLDQE
Trigger: CTCCTGGTCCAAATGGTGAACAAGGAAGTGCTGGCATTCCTGGTCCTTTCGGTCCAAGAGGTCCTCCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp GACCGTACCACACAGGCTTATTGTCAGGGGATTTGCTaGCCCACCAGGTTTTACGTGGAACACTGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: DRTTQAYCQGIC*PTRFYVEHWLG
Trigger: ACCCAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp TCCTCTTGGGCCAACAGGACCCACAGAGCCAGGCATGAGTCCTACTaGACTTCCAAGTCCAGATTTTTCATCCAGCCCAGCCATCTGAGC +
Preference number: 6 (lower is better)
Translates to: SSWANRTHRARHESY*TSKSRFFIQPSHLS
Trigger: GCTCAGATGGCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGACTCATGCCTGGCTCTGTGGGTCCTGTTGGCCCAAGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp CCAACAGGACCCACAGAGCCAGGCATGAGTCCTACTTaGCTTCCAAGTCCAGATTTTTCATCCAGCCCAGCC +
Preference number: 6 (lower is better)
Translates to: PTGPTEPGMSPT*LPSPDFSSSPA
Trigger: GGCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGACTCATGCCTGGCTCTGTGGGTCCTGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp CAAGACCGTACCACACAGGCTTATTGTCAGGGGATTTaGTGGCCCACCAGGTTTTACGTGGAACACTGGCTG +
Preference number: 6 (lower is better)
Translates to: QDRTTQAYCQGI*WPTRFYVEHWL
Trigger: CAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp GCCAACAGGACCCACAGAGCCAGGCATGAGTCCTACTaGACTTCCAAGTCCAGATTTTTCATCCAGCCCAGC +
Preference number: 6 (lower is better)
Translates to: ANRTHRARHESY*TSKSRFFIQPS
Trigger: GCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGACTCATGCCTGGCTCTGTGGGTCCTGTTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp CACACCGGACAGCACTCCCCAGTGGGTGTTATAGGATTGGCACAGTaGAGCACCTCTGGGCACTCTATCTTGTCACAAAGAATGGCACCA +
Preference number: 6 (lower is better)
Translates to: HTGQHSPVGVIGLAQ*STSGHSILSQRMAP
Trigger: TGGTGCCATTCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCTGTCCGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp GTTTGTGGGCACACCGGACAGCACTCCCCAGTGGGTGTTATAGGATaGGCACAGTTGAGCACCTCTGGGCACTCTATCTTGTCACAAAGA +
Preference number: 6 (lower is better)
Translates to: VCGHTGQHSPVGVIG*AQLSTSGHSILSQR
Trigger: TCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCTGTCCGGTGTGCCCACAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp TCCTCTACCAAAACTAGTATCTCCACCTCCAGTTTGTaGGCACACCGGACAGCACTCCCCAGTGGGTGTTAT +
Preference number: 6 (lower is better)
Translates to: SSTKTSISTSSL*AHRTALPSGCY
Trigger: ATAACACCCACTGGGGAGTGCTGTCCGGTGTGCCCACAAACTGGAGGTGGAGATACTAGTTTTGGTAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AGTAGGACCTGCTTCTCCCTTCATTCCAGGATTTCCTaGAAAACCGGAAGAGCCAGGTATCCCAAGAGGACC +
Preference number: 6 (lower is better)
Translates to: SRTCFSLHSRIS*KTGRARYPKRT
Trigger: GGTCCTCTTGGGATACCTGGCTCTTCCGGTTTTCCAGGAAATCCTGGAATGAAGGGAGAAGCAGGTCCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp TCAAGACCGTACCACACAGGCTTATTGTCAGGGGATTaGCTGGCCCACCAGGTTTTACGTGGAACACTGGCT +
Preference number: 6 (lower is better)
Translates to: SRPYHTGLLSGD*LAHQVLRGTLA
Trigger: AGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp CTATTCATGTCAAGACCGTACCACACAGGCTTATTGTCAGGGGATTaGCTGGCCCACCAGGTTTTACGTGGAACACTGGCTGGGTTTGCT +
Preference number: 6 (lower is better)
Translates to: LFMSRPYHTGLLSGD*LAHQVLRGTLAGFA
Trigger: AGCAAACCCAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp CTTCCAAGTCCAGATTTTTCATCCAGCCCAGCCATCTaGGCTGAAAAAGGCCTGCTCATGCCATCAGGTCCT +
Preference number: 6 (lower is better)
Translates to: LPSPDFSSSPAI*AEKGLLMPSGP
Trigger: AGGACCTGATGGCATGAGCAGGCCTTTTTCAGCTCAGATGGCTGGGCTGGATGAAAAATCTGGACTTGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp CCAGGGTCTGTTTTGTTTGTGTCATCTGGAGCTGCCTaGTCTTCCGTAAACTCTGGAAGTGGATCTGGCATG +
Preference number: 6 (lower is better)
Translates to: PGSVLFVSSGAA*SSVNSGSGSGM
Trigger: CATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp CAGCACTCCCCAGTGGGTGTTATAGGATTGGCACAGTaGAGCACCTCTGGGCACTCTATCTTGTCACAAAGA +
Preference number: 6 (lower is better)
Translates to: QHSPVGVIGLAQ*STSGHSILSQR
Trigger: TCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp GCTTTGTGGGATGGCAAAGCTTTAAATCATCACAAGTaGGGGCTGGGTGTTTCTTGGAACCATCAGGGCTAC +
Preference number: 6 (lower is better)
Translates to: ALWDGKALNHHK*GLGVSWNHQGY
Trigger: GTAGCCCTGATGGTTCCAAGAAACACCCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AACATGGATCCCAGGGTCTGTTTTGTTTGTGTCATCTaGAGCTGCCTGGTCTTCCGTAAACTCTGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: NMDPRVCFVCVI*SCLVFRKLWKW
Trigger: CCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGGGATCCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp GGATTGGCACAGTTGAGCACCTCTGGGCACTCTATCTaGTCACAAAGAATGGCACCATTGTCACAGACACAG +
Preference number: 6 (lower is better)
Translates to: GLAQLSTSGHSI*SQRMAPLSQTQ
Trigger: CTGTGTCTGTGACAATGGTGCCATTCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp AGAGACTTCAGGGTAACATGGATCCCAGGGTCTGTTTaGTTTGTGTCATCTGGAGCTGCCTGGTCTTCCGTA +
Preference number: 6 (lower is better)
Translates to: RDFRVTWIPGSV*FVSSGAAWSSV
Trigger: TACGGAAGACCAGGCAGCTCCAGATGACACAAACAAAACAGACCCTGGGATCCATGTTACCCTGAAGTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp CCTCTATTCATGTCAAGACCGTACCACACAGGCTTATaGTCAGGGGATTTGCTGGCCCACCAGGTTTTACGT +
Preference number: 6 (lower is better)
Translates to: PLFMSRPYHTGL*SGDLLAHQVLR
Trigger: ACGTAAAACCTGGTGGGCCAGCAAATCCCCTGACAATAAGCCTGTGTGGTACGGTCTTGACATGAATAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp GGTCTGCATTGCCAATATCCACAGGACCAACATCTATaGTGGGCAAGCGGGCCACATTCTGTGTTCTGTATT +
Preference number: 6 (lower is better)
Translates to: GLHCQYPQDQHL*WASGPHSVFCI
Trigger: AATACAGAACACAGAATGTGGCCCGCTTGCCCATCATAGATGTTGGTCCTGTGGATATTGGCAATGCAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp ATCTGGAGCTGCCTGGTCTTCCGTAAACTCTGGAAGTaGATCTGGCATGTTCTCATCATAGTGTCCCATGAT +
Preference number: 6 (lower is better)
Translates to: IWSCLVFRKLWK*IWHVLIIVSHD
Trigger: ATCATGGGACACTATGATGAGAACATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp GCTTTAAATCATCACAAGTGCGGGCTGGGTGTTTCTTaGAACCATCAGGGCTACGCATGGTTTCAATCTGAC +
Preference number: 6 (lower is better)
Translates to: ALNHHKCGLGVS*NHQGYAWFQSD
Trigger: GTCAGATTGAAACCATGCGTAGCCCTGATGGTTCCAAGAAACACCCAGCCCGCACTTGTGATGATTTAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp GGATCAATCCAATATTCACCGCTCTGCTTTGTGGGATaGCAAAGCTTTAAATCATCACAAGTGCGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: GSIQYSPLCFVG*QSFKSSQVRAG
Trigger: CCCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAGCGGTGAATATTGGATTGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp AGTGGGTGTTATAGGATTGGCACAGTTGAGCACCTCTaGGCACTCTATCTTGTCACAAAGAATGGCACCATT +
Preference number: 6 (lower is better)
Translates to: SGCYRIGTVEHL*ALYLVTKNGTI
Trigger: AATGGTGCCATTCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS GCA 72 bp ACAAACTGGCCCAATATCAAGGCCAAATTCCTGGTCTaGATTGCCAATATCCACAGGACCAACATCTATGAT +
Preference number: 6 (lower is better)
Translates to: TNWPNIKAKFLV*IANIHRTNIYD
Trigger: ATCATAGATGTTGGTCCTGTGGATATTGGCAATGCAGACCAGGAATTTGGCCTTGATATTGGGCCAGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CCA 72 bp ATGAAACAAACTGGCCCAATATCAAGGCCAAATTCCTaGTCTGCATTGCCAATATCCACAGGACCAACATCT +
Preference number: 6 (lower is better)
Translates to: MKQTGPISRPNS*SALPISTGPTS
Trigger: AGATGTTGGTCCTGTGGATATTGGCAATGCAGACCAGGAATTTGGCCTTGATATTGGGCCAGTTTGTTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp TTGCCTACATTTCCATTTCGCTTAGAGCAGGTGTCTTaGAGAACTGTGTATCTGAATCTGATGTTTCCTTCT +
Preference number: 6 (lower is better)
Translates to: LPTFPFRLEQVS*RTVYLNLMFPS
Trigger: AGAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACACCTGCTCTAAGCGAAATGGAAATGTAGGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 72 bp TTTGCCTACATTTCCATTTCGCTTAGAGCAGGTGTCTaGAAGAACTGTGTATCTGAATCTGATGTTTCCTTC +
Preference number: 6 (lower is better)
Translates to: FAYISISLRAGV*KNCVSESDVSF
Trigger: GAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACACCTGCTCTAAGCGAAATGGAAATGTAGGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS TCA 72 bp TCACAAAGAATGGCACCATTGTCACAGACACAGATCTaGCATGGAGAAGGTTTCCAAATGTCTCTATTTAAA +
Preference number: 6 (lower is better)
Translates to: SQRMAPLSQTQI*HGEGFQMSLFK
Trigger: TTTAAATAGAGACATTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5
CDS CAA 90 bp AAAGATAGTTTTGCCTACATTTCCATTTCGCTTAGAGCAGGTGTCTaGAAGAACTGTGTATCTGAATCTGATGTTTCCTTCTCCTTTTAT +
Preference number: 6 (lower is better)
Translates to: KDSFAYISISLRAGV*KNCVSESDVSFSFY
Trigger: ATAAAAGGAGAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACACCTGCTCTAAGCGAAATGGAAATGTAGGCAAAACTATCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086430.5