RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL4A5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031274

Ensembl transcript IDs: ENSMUST00000112930.8, ENSMUST00000112931.8, ENSMUST00000130732.2

Found 379 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTAGCACCATTGGTGGGAGCAGTGGTAAAGGTGGGGAGAGTGAGTaGGACATTGCATCCTGGGAATCACATATAATAGTTTATGTATGT +
Preference number: 1 (lower is better)
Translates to: ISTIGGSSGKGGESE*DIASWESHIIVYVC
Trigger: ACATACATAAACTATTATATGTGATTCCCAGGATGCAATGTCTCACTCACTCTCCCCACCTTTACCACTGCTCCCACCAATGGTGCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGTGGGGAGAGTGAGTaGGACATTGCATCCTGGGAA +
Preference number: 2 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGGESE*DIASWE
Trigger: TTCCCAGGATGCAATGTCTCACTCACTCTCCCCACC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGTGGGGAGAGTGAGTaGGACATTGCATCCTGGGAA +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGGESE*DIASWE
Trigger: TTCCCAGGATGCAATGTCTCACTCACTCTCCCCACC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATGGAGCCCTTGCTCTaGCACATTGCTGAGGTACAT +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTMEPLL*HIAEVH
Trigger: ATGTACCTCAGCAATGTGCCAGAGCAAGGGCTCCAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCTCTGGCACATTGCTaGGGTACATCTGAATCTTCA +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTALAHC*GTSESS
Trigger: TGAAGATTCAGATGTACCTCAGCAATGTGCCAGAGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCGCCTTACAATCCTTaGAGGAATTTATTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSPYNP*RNLLEP
Trigger: GGGCTCCAATAAATTCCTTCAAGGATTGTAAGGCGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGCTGAGGTACATCTaGATCTTCATGGTTGCTAGT +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLLRYI*IFMVAS
Trigger: ACTAGCAACCATGAAGATTCAGATGTACCTCAGCAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACATCTGAATCTTCATaGTTGCTAGTCAGCATGTTC +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTSESS*LLVSMF
Trigger: GAACATGCTGACTAGCAACCATGAAGATTCAGATGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTTGAAGGAATTTATTaGAGCCCCAGAAGTATAGTC +
Preference number: 2 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLEGIY*SPRSIV
Trigger: GACTATACTTCTGGGGCTCCAATAAATTCCTTCAAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR TCA 72 bp TGGAGCCCTTGCTCTGGCACATTGCTGAGGTACATCTaGATCTTCATGGTTGCTAGTCAGCATGTTCTCTTC +
Preference number: 3 (lower is better)
Translates to: WSPCSGTLLRYI*IFMVASQHVLF
Trigger: GAAGAGAACATGCTGACTAGCAACCATGAAGATTCAGATGTACCTCAGCAATGTGCCAGAGCAAGGGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGAGTGAGTGAGACATaGCATCCTGGGAATCACATA +
Preference number: 3 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRVSET*HPGNHI
Trigger: TATGTGATTCCCAGGATGCAATGTCTCACTCACTCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCTGAATCTTCATGGTaGCTAGTCAGCATGTTCTCT +
Preference number: 3 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSESSW*LVSMFS
Trigger: AGAGAACATGCTGACTAGCAACCATGAAGATTCAGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGAAGGATGGAGCCCTaGCTCTGGCACATTGCTGAG +
Preference number: 3 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGRMEP*LWHIAE
Trigger: CTCAGCAATGTGCCAGAGCAAGGGCTCCATCCTTCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGAGTGAGTGAGACATaGCATCCTGGGAATCACATA +
Preference number: 3 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRVSET*HPGNHI
Trigger: TATGTGATTCCCAGGATGCAATGTCTCACTCACTCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR CCA 72 bp TATGAACTTCGCCTTACAATCCTTGAAGGAATTTATTaGAGCCCCAGAAGTATAGTCACTTTCCTATTGCTT +
Preference number: 3 (lower is better)
Translates to: YELRLTILEGIY*SPRSIVTFLLL
Trigger: AAGCAATAGGAAAGTGACTATACTTCTGGGGCTCCAATAAATTCCTTCAAGGATTGTAAGGCGAAGTTCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
3UTR-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCTGAATCTTCATGGTaGCTAGTCAGCATGTTCTCT +
Preference number: 3 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSESSW*LVSMFS
Trigger: AGAGAACATGCTGACTAGCAACCATGAAGATTCAGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCCTTTGGTCCCGGTaGGCCTGGTGGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPLWSR*AWWARR
Trigger: CCTCCTGGCCCACCAGGCCCACCGGGACCAAAGGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGGGCCAGGAGGTCCTaGAAGGCCAGGAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGARRS*KARSPR
Trigger: CCTGGGGCTCCTGGCCTTCCAGGACCTCCTGGCCCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGCCCCAGGAGCTCCTaGAGGTCCCGGAATTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPRSS*RSRNSW
Trigger: CCAGGAATTCCGGGACCTCCAGGAGCTCCTGGGGCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCCTGGGAAGCCTGGTaGCCCAGGAGGCCCATCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSWEAW*PRRPIW
Trigger: CCAGATGGGCCTCCTGGGCCACCAGGCTTCCCAGGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGTCCTGGCAGCCCTaGGTCTCCTTTGCGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLSWQP*VSFAPS
Trigger: GGAGGGCGCAAAGGAGACCCAGGGCTGCCAGGACAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAATCCACGGGCACCTaGCTGTCCTGGCAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQSTGT*LSWQPW
Trigger: CCAGGGCTGCCAGGACAGCCAGGTGCCCGTGGATTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGACCTGGTAGGCCTTaGGGGCCTGGAAGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPGRP*GPGSPG
Trigger: ACCAGGACTTCCAGGCCCTCAAGGCCTACCAGGTCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCGCCCTTTTCTCCTaGAGGGCCAGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTALFS*RARETW
Trigger: CCAGGTCTCCCTGGCCCTGCAGGAGAAAAGGGCGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGTCCCCGAGGTCCTaGAGGGCCTTCTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLSPRS*RAFWTW
Trigger: CCAGGTCCAGAAGGCCCTCCAGGACCTCGGGGACAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCACCAGGAGGTCCTaGTGGTCCAGGACGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFTRRS*WSRTPS
Trigger: GGAGGGCGTCCTGGACCACCAGGACCTCCTGGTGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGTCCTGGTGGTCCCTaGAGACCAATTCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPGGP*RPIPGS
Trigger: GCTGCCAGGAATTGGTCTTCAGGGACCACCAGGACC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCAGGCAGGCCCGGTTaGCCTTTTGCTCCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGRPG*PFAPGF
Trigger: AAACCCTGGAGCAAAAGGTCAACCGGGCCTGCCTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCCCTGGGTCTCCTTTaGGCCCTCCTGCACCATCAA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHALGLL*ALLHHQ
Trigger: TTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTGGAGCCCCATCATaGCCTGGCATCCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGAPS*PGIPGR
Trigger: TCTTCCTGGGATGCCAGGCCATGATGGGGCTCCAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGACCCTGGAAAGCCTaGAGCACCTGGAGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRPWKA*STWRSR
Trigger: CCTGGACCTCCAGGTGCTCCAGGCTTTCCAGGGTCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGGGCCAGGGAGTCCTaGCAAACCATCCTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGARES*QTILSR
Trigger: CCTGGAAAGGATGGTTTGCCAGGACTCCCTGGCCCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAGGCCTGGTTGGCCTaGAAGTCCAGGATCACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQAWLA*KSRITW
Trigger: CCAGGTGATCCTGGACTTCCAGGCCAACCAGGCCTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTGGCAGGCCTGGTTaGCCTGGAAGTCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGRPG*PGSPGS
Trigger: TGATCCTGGACTTCCAGGCCAACCAGGCCTGCCAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCTACCAGGTATTCCTaGCAGGCCTGGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHATRYS*QAWLAW
Trigger: CCAGGCCAACCAGGCCTGCCAGGAATACCTGGTAGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCCTGGCTCTCCCTTTaGTCCTGGGAAGCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSWLSL*SWEAWW
Trigger: CCACCAGGCTTCCCAGGACCAAAGGGAGAGCCAGGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCTGGAGGCCCTACTaGGCCAGGTTGTCCATTTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPWRPY*ARLSIW
Trigger: CCAAATGGACAACCTGGCCCAGTAGGGCCTCCAGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGGCCTATTGGCCCTaGAGTCCCTGGTGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLAYWP*SPWWSW
Trigger: CCAGGACCACCAGGGACTCCAGGGCCAATAGGCCAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAGTCCTGGTGTTCCTaGGAATCCAGGCAGGCCCGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKSWCS*ESRQAR
Trigger: CCGGGCCTGCCTGGATTCCCAGGAACACCAGGACTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCGTCCTGGATCTCCTaGAGGGCCAATTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHASWIS*RANWTW
Trigger: CCAGGTCCAATTGGCCCTCCAGGAGATCCAGGACGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGACCAGGTGGGCCCTaGAGACCTTGTTCGCCTTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPGGP*RPCSPF
Trigger: AAAAGGCGAACAAGGTCTTCAGGGCCCACCTGGTCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCAGGGAGACCTGGCTaGCCTTGCATGCCATCATCA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGRPG*PCMPSS
Trigger: TGATGATGGCATGCAAGGTCAGCCAGGTCTCCCTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCCTGGCTCACCCTTTaGACCTGGAAGGCCAGGATT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHAWLTL*TWKARI
Trigger: AATCCTGGCCTTCCAGGTTCAAAGGGTGAGCCAGGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCATGTCCCTCGCCCATaGCATTCGATGAAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHHVPRP*HSMKGA
Trigger: CGCTCCCTTCATCGAATGTCATGGGCGAGGGACATG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGCTGGCCCAGGAATaGCATCTTGACCTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLLAQE*HLDLAC
Trigger: GCAAGCCAGGTCAAGATGGCATTCCTGGGCCAGCAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGCCTGGGAGTCCATTaGGTCCTGGATCTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSLGVH*VLDLLE
Trigger: CTCCAGGAGATCCAGGACGCAATGGACTCCCAGGCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGTCCTGGAGGTCCTTaGAATCCATCTGGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPGGP*NPSGPG
Trigger: CCCAGGACCAGATGGATTGCAAGGACCTCCAGGACC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGCGACGAAGGCAGCTaGCAGCCGTACCCAAGTCTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSDEGS*QPYPSL
Trigger: AAGACTTGGGTACGGCTGGCAGCTGCCTTCGTCGCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGATACCTTGAGGTCCTaGAGCCCCATCATGGCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDTLRS*SPIMAW
Trigger: CCAGGCCATGATGGGGCTCCAGGACCTCAAGGTATC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCCCCCTTCATACCTaGGATCCCAGGAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFPLHT*DPRRSW
Trigger: CCAGGACCTCCTGGGATCCCAGGTATGAAGGGGGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGGACCAGGTATTCCTaGAGGTCCAGGAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRTRYS*RSRRPS
Trigger: AGAGGGCCTCCTGGACCTCCAGGAATACCTGGTCCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGAGTCCTTTATCACCTaGAGGTCCTGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHESFIT*RSWRPR
Trigger: CCTGGGCCTCCAGGACCTCCAGGTGATAAAGGACTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAAGCCTGGAGCACCTaGAGGTCCAGGTATGCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKAWST*RSRYAW
Trigger: CCAGGCATACCTGGACCTCCAGGTGCTCCAGGCTTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGTCACCCTTAGACCCTaGAAAGCCTGGAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHVTLRP*KAWSTW
Trigger: CCAGGTGCTCCAGGCTTTCCAGGGTCTAAGGGTGAC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCGCCTATGGGGCCTaGAGGCCCAAAACCAACTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFAYGA*RPKTNW
Trigger: CCAGTTGGTTTTGGGCCTCCAGGCCCCATAGGCGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTATTCCTGGCAGGCCTaGTTGGCCTGGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHYSWQA*LAWKSR
Trigger: CCTGGACTTCCAGGCCAACCAGGCCTGCCAGGAATA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCTTTAGGACCAGGTaGTCCAGGAGGCCCAATCCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTFRTR*SRRPNP
Trigger: GGGATTGGGCCTCCTGGACCACCTGGTCCTAAAGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGGTCCTGTAAGTCCTaGTGGACCAGGGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRSCKS*WTRETR
Trigger: CCTGGTCTCCCTGGTCCACCAGGACTTACAGGACCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAAACCTGGAGGACCTaGTCTCCCAGGAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKTWRT*SPRRAL
Trigger: CAAGGCCCTCCTGGGAGACCAGGTCCTCCAGGTTTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCTTCTGTACCTGGTaGACCTGGTCTCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTFCTW*TWSPRR
Trigger: CCTCCTGGGAGACCAGGTCCACCAGGTACAGAAGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTCCCACCGACCCTTTaGTACCTGGGTTTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLPPTL*YLGFLD
Trigger: ATCCAGGAAACCCAGGTATCAAAGGGTCGGTGGGAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGACCTTCCAAAGCTTaGCCAGGAGAACCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPSKA*PGEPGG
Trigger: TCCTCCTGGTTCTCCTGGTCAAGCTTTGGAAGGTCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGTACCTGGTGGACCTTaGAAACCTGGAGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHVPGGP*KPGGPG
Trigger: ACCAGGTCCTCCAGGTTTTCAAGGTCCACCAGGTAC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGGAGGTCCAGGTATaGCTGGCAATCCTTTCGGAC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLEVQV*LAILSD
Trigger: GTCCGAAAGGATTGCCAGGCATACCTGGACCTCCAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAGGAGCACCACTCCTaGCAGGAATTCCCAAAGGTC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQEHHS*QEFPKV
Trigger: GACCTTTGGGAATTCCTGGCAGGAGTGGTGCTCCTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCACTCAGTCCAGGTTaGCCTGGGTCTCCAGGTAAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPLSPG*PGSPGN
Trigger: ATTACCTGGAGACCCAGGGCAACCTGGACTGAGTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCACAACTGCTGTTCCTaGAGGTCCAGGAAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHHNCCS*RSRKAR
Trigger: CCTGGCTTTCCTGGACCTCCAGGAACAGCAGTTGTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGGGCCAGGAGGTCCTaGAAGGCCAGGAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGARRS*KARSPR
Trigger: CCTGGGGCTCCTGGCCTTCCAGGACCTCCTGGCCCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGATTCCAAGAGATCCTaGAGGACCTGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDSKRS*RTWETW
Trigger: CCAGGTCTCCCAGGTCCTCCAGGATCTCTTGGAATC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAAACCAGGCTTTCCTaGCTGGGTTATGGTCTGGCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQTRLS*LGYGLA
Trigger: GGCCAGACCATAACCCAGCCAGGAAAGCCTGGTTTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCTGCCTGGACTACCTaGCAAACCAGGCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSAWTT*QTRLSW
Trigger: CCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGTCCCTGGTGGTCCTaGTGGTCCCTGAAGACCAAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSPWWS*WSLKTN
Trigger: ATTGGTCTTCAGGGACCACCAGGACCACCAGGGACT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGTCCAGAAAGTCCTaGGAGTCCAGGAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLSRKS*ESRRSW
Trigger: CCAGGACCTCCTGGACTCCCAGGACTTTCTGGACAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCATTCCTGGGAATCCTaGAACACCAGGGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHHSWES*NTRETR
Trigger: CCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGAATG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGGGCCAGTGGAGCCTaGTACTCCAATGGGTCCTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRASGA*YSNGSF
Trigger: AAAGGACCCATTGGAGTACCAGGCTCCACTGGCCCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGAGTCCATTGCGTCCTaGATCTCCTGGAGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHESIAS*ISWRAN
Trigger: ATTGGCCCTCCAGGAGATCCAGGACGCAATGGACTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTGCACCATCAAAGCCTaGGAGTCCATTGCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHCTIKA*ESIASW
Trigger: CCAGGACGCAATGGACTCCCAGGCTTTGATGGTGCA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAATCCATCTGGTCCTaGGGGACCATCCAATCCACG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQSIWS*GTIQST
Trigger: CGTGGATTGGATGGTCCCCCAGGACCAGATGGATTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCATGTTCATTGGCATaGGCTCTGGGGTGGAAAGCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPCSLA*ALGWKA
Trigger: GGCTTTCCACCCCAGAGCCCATGCCAATGAACATGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGGTTCCATGTTCATTaGCATGGGCTCTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGFHVH*HGLWGG
Trigger: TCCACCCCAGAGCCCATGCCAATGAACATGGAACCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGGCCTGGAGGCCCTaGAATGCCAGTTCCAATACA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLAWRP*NASSNT
Trigger: TGTATTGGAACTGGCATTTCAGGGCCTCCAGGCCAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGACCAGGTGTTCCTTTaGAACCTGGGAATCCTGGTG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDQVFL*NLGILV
Trigger: CACCAGGATTCCCAGGTTTCAAAGGAACACCTGGTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTGGAAGTCCAATGCCTaGAACCCCAGGCTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHWKSNA*NPRLSF
Trigger: AAAGGAGAGCCTGGGGTTTCAGGCATTGGACTTCCA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTACAATACTCTGTCCTaGAGGACCAGGCAACCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHYNTLS*RTRQPR
Trigger: CCTGGGTTGCCTGGTCCTTCAGGACAGAGTATTGTA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCACACCAGTTCCAGGTaGAGGAATTACAAGTCCGGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHHTSSR*RNYKSG
Trigger: CCCGGACTTGTAATTCCTGCACCTGGAACTGGTGTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGCCACACCTTGTATaGCTTTTTCGCCTATGGGGC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLPHLV*LFRLWG
Trigger: GCCCCATAGGCGAAAAAGGCATACAAGGTGTGGCAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCAGGAAATCTGGATaGATTGGTCCAGGAGGACCT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPRKSG*IGPGGP
Trigger: AGGTCCTCCTGGACCAATGCATCCAGATTTCCTGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCTCCCTTTTGTCCTaGTGGCCCAGGAATGCCATC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFSLLS*WPRNAI
Trigger: GATGGCATTCCTGGGCCAGCAGGACAAAAGGGAGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAGACCTGGTGTCCCTaGAAATCCAGGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKTWCP*KSRKSR
Trigger: CCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTGGGATTCCTGGTTaGCCAGTCTCTCCATCTTTG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGIPG*PVSPSL
Trigger: CAAAGATGGAGAGACTGGCCAACCAGGAATCCCAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGCTGGGTTATGGTCTaGCCTGGATCTCCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGWVMV*PGSPLG
Trigger: TCCTAAAGGAGATCCAGGCCAGACCATAACCCAGCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCCTGGCTGGGTTATaGTCTGGCCTGGATCTCCTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFLAGL*SGLDLL
Trigger: AAGGAGATCCAGGCCAGACCATAACCCAGCCAGGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCACCATCTCTGCCTaGACTACCTGGCAAACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFTISA*TTWQTR
Trigger: CCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCGATCCCAGGAAATCTaGATGCATTGGTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRSQEI*MHWSRR
Trigger: CCTCCTGGACCAATGCATCCAGATTTCCTGGGATCG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGATACCTGGGTTTCCTaGATATCCAGGCAGACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDTWVS*ISRQTR
Trigger: CCTGGTCTGCCTGGATATCCAGGAAACCCAGGTATC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCCCTTTTGTCCTGCTaGCCCAGGAATGCCATCTTG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSLLSC*PRNAIL
Trigger: CAAGATGGCATTCCTGGGCCAGCAGGACAAAAGGGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCCGGGAGTCCTGGTaGTCCTTGATCTCCTTTCAA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTRESW*SLISFQ
Trigger: TTGAAAGGAGATCAAGGACCACCAGGACTCCCGGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCCTTGCAATCCATCTaGTCCTGGGGGACCATCCAA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSLQSI*SWGTIQ
Trigger: TTGGATGGTCCCCCAGGACCAGATGGATTGCAAGGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGTCCTGGTGGTCCTTaGTCTCCTTTCAAACCAGGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSPGGP*SPFKPG
Trigger: ACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCCCATGACATTCGATaGAGGGAGCGGAACGAAATT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHAHDIR*RERNEI
Trigger: AATTTCGTTCCGCTCCCTTCATCGAATGTCATGGGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTTACCTCTTTTGCCTaGCTCTCCTGGCTCACCCTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFTSFA*LSWLTL
Trigger: AAGGGTGAGCCAGGAGAGGCAGGCAAAAGAGGTAAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCATCTTGACCTGGCTTaGCTTTTTCACCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHHLDLA*LFHQEV
Trigger: GACCTCCTGGTGAAAAAGGCAAGCCAGGTCAAGATG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCGTGGGCATTGTGGTaGTTCTGTTGTTTGACTGTG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPWALW*FCCLTV
Trigger: CACAGTCAAACAACAGAAGCACCACAATGCCCACGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGGCCAGAGCCTTCTaGTCCTGCACTTGTATGCAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLARAF*SCTCMH
Trigger: ATGCATACAAGTGCAGGAGCAGAAGGCTCTGGCCAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGATTCCTTTTGGTCCTaGTGGCCCTGGAATTCCATC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDSFWS*WPWNSI
Trigger: GATGGAATTCCAGGGCCACCAGGACCAAAAGGAATC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCTCTGATTCCTTTTaGTCCTGGTGGCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTSDSF*SWWPWN
Trigger: ATTCCAGGGCCACCAGGACCAAAAGGAATCAGAGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTTGCCTGCCTCTCCTaGCTCACCCTTTTCACCTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFACLS*LTLFTF
Trigger: AAAGGTGAAAAGGGTGAGCCAGGAGAGGCAGGCAAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAATCCCAGGGATACCTaGTTCTCCTTTGCTACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHNPRDT*FSFATR
Trigger: CCTGGTAGCAAAGGAGAACCAGGTATCCCTGGGATT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGGTCCCGGAATTCCTaGAAAACCTTTAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRSRNS*KTFRTR
Trigger: CCTGGTCCTAAAGGTTTTCCAGGAATTCCGGGACCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGCCCCAGGAGCTCCTaGAGGTCCCGGAATTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPRSS*RSRNSW
Trigger: CCAGGAATTCCGGGACCTCCAGGAGCTCCTGGGGCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTTTACTTCCTTTCTaGCCAGGTAACCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPLLPF*PGNPGE
Trigger: CTCTCCTGGGTTACCTGGCCAGAAAGGAAGTAAAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCGACCCTTTGATACCTaGGTTTCCTGGATATCCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRPFDT*VSWISR
Trigger: CCTGGATATCCAGGAAACCCAGGTATCAAAGGGTCG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAAGCCTGGTTGACCTaGTTCTCCCTTTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKAWLT*FSLLSC
Trigger: GCAGGACAAAAGGGAGAACCAGGTCAACCAGGCTTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCTTCTGTACCTGGTaGACCTTGAAAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTFCTW*TLKTWR
Trigger: CCTCCAGGTTTTCAAGGTCCACCAGGTACAGAAGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGCCTGGTACTCCAATaGGTCCTTTCATTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSLVLQ*VLSFLG
Trigger: TCCCAGGAATGAAAGGACCCATTGGAGTACCAGGCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTGTCCAGGAATCCCTaGAGGTCCAGGATCTCCTTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLSRNP*RSRISF
Trigger: AAAGGAGATCCTGGACCTCCAGGGATTCCTGGACAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGTCCTGGCAGCCCTaGGTCTCCTTTGCGCCCTCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLSWQP*VSFAPS
Trigger: GGAGGGCGCAAAGGAGACCCAGGGCTGCCAGGACAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAATCCACGGGCACCTaGCTGTCCTGGCAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQSTGT*LSWQPW
Trigger: CCAGGGCTGCCAGGACAGCCAGGTGCCCGTGGATTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCCCCGTGGGCATTGTaGTGCTTCTGTTGTTTGACT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSPWAL*CFCCLT
Trigger: AGTCAAACAACAGAAGCACCACAATGCCCACGGGGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATGAACTGTTCCCCGTaGGCATTGTGGTGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHMNCSP*ALWCFC
Trigger: ACAGAAGCACCACAATGCCCACGGGGAACAGTTCAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCATGGGCTCTGGGGTaGAAAGCCAGTAAGAATAGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHAWALG*KASKNS
Trigger: ACTATTCTTACTGGCTTTCCACCCCAGAGCCCATGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCGACTAATGAATGGCTaGATGCTCTGTCCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRLMNG*MLCPFR
Trigger: CCTGAAGGGACAGAGCATCCAGCCATTCATTAGTCG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCCTGAGGACAGTGTaGAATCTGAATAGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPLRTV*NLNSLA
Trigger: AGCCAGACTATTCAGATTCCACACTGTCCTCAGGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCGTCCTGGAGGACCTaGAGGTCCTGGGAAACCACG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTASWRT*RSWETT
Trigger: CGTGGTTTCCCAGGACCTTCAGGTCCTCCAGGACGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATTCCAAAGCCTGGTTaGCCTGGTTCTCCCTTTTGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHIPKPG*PGSPFC
Trigger: ACAAAAGGGAGAACCAGGTCAACCAGGCTTTGGAAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTCTTCATGCATACTTaGCATCGGCTAATACGCGTC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLFMHT*HRLIRV
Trigger: GACGCGTATTAGCCGATGTCAAGTATGCATGAAGAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTACCTGGTTCTCCTTTaGTACCAGGTATTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHYLVLL*YQVFLA
Trigger: TGCCAGGAATACCTGGTAGCAAAGGAGAACCAGGTA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCGCCCTTTTCTCCTaGAGGGCCAGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTALFS*RARETW
Trigger: CCAGGTCTCCCTGGCCCTGCAGGAGAAAAGGGCGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGTCCCCGAGGTCCTaGAGGGCCTTCTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLSPRS*RAFWTW
Trigger: CCAGGTCCAGAAGGCCCTCCAGGACCTCGGGGACAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACACCAGGCTCTCCTTTaGGGCCAGGGAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHQALL*GQGVLA
Trigger: TGCCAGGACTCCCTGGCCCCAAAGGAGAGCCTGGTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCAGGAGGCCCATCTaGACCCATTCTTCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPRRPI*THSSRG
Trigger: GCCCCTGGAAGAATGGGTCCAGATGGGCCTCCTGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTCTCCCTTTGGTCCTaGGAAGCCTGGTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLSLWS*EAWWPR
Trigger: CCTGGGCCACCAGGCTTCCCAGGACCAAAGGGAGAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCCAGGTTGGCCTATTaGCCCTGGAGTCCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTARLAY*PWSPWW
Trigger: CCACCAGGGACTCCAGGGCCAATAGGCCAACCTGGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCACCAGGAGGTCCTaGTGGTCCAGGACGCCCTCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFTRRS*WSRTPS
Trigger: GGAGGGCGTCCTGGACCACCAGGACCTCCTGGTGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAATGCCATCTTGACCTaGCTTGCCTTTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHNAILT*LAFFTR
Trigger: CCTGGTGAAAAAGGCAAGCCAGGTCAAGATGGCATT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGACATATCAACAGTaGCCAGCCAAAAGCTGTACG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLTYQQ*PAKSCT
Trigger: CGTACAGCTTTTGGCTGGCCACTGTTGATATGTCAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTTCGCCTTTGACACCTaGAAATCCAGGGACACCTNN +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHFAFDT*KSRDTX
Trigger: NNAGGTGTCCCTGGATTTCCAGGTGTCAAAGGCGAA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGTCCTGGTGGTCCCTaGAGACCAATTCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPGGP*RPIPGS
Trigger: GCTGCCAGGAATTGGTCTTCAGGGACCACCAGGACC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCAGGCAGGCCCGGTTaGCCTTTTGCTCCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGRPG*PFAPGF
Trigger: AAACCCTGGAGCAAAAGGTCAACCGGGCCTGCCTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCCCTGGGTCTCCTTTaGGCCCTCCTGCACCATCAA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTALGLL*ALLHHQ
Trigger: TTGATGGTGCAGGAGGGCGCAAAGGAGACCCAGGGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAATTGGCATAGTAATTaGATGTCCCTCGCCCATGAC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHNWHSN*MSLAHD
Trigger: GTCATGGGCGAGGGACATGCAATTACTATGCCAATT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTGGAGCCCCATCATaGCCTGGCATCCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGAPS*PGIPGR
Trigger: TCTTCCTGGGATGCCAGGCCATGATGGGGCTCCAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTATTCCAGGAGGACCTaGGTATCCTTGATTACCCTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHYSRRT*VSLITL
Trigger: AAGGGTAATCAAGGATACCCAGGTCCTCCTGGAATA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCGCCTTTTTCACCTTTaGGTCCCTGGAAATTTAAGC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRLFHL*VPGNLS
Trigger: GCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGCG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGACCCTGGAAAGCCTaGAGCACCTGGAGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRPWKA*STWRSR
Trigger: CCTGGACCTCCAGGTGCTCCAGGCTTTCCAGGGTCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAGGCCTGGTTGGCCTaGAAGTCCAGGATCACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQAWLA*KSRITW
Trigger: CCAGGTGATCCTGGACTTCCAGGCCAACCAGGCCTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTGGCAGGCCTGGTTaGCCTGGAAGTCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGRPG*PGSPGS
Trigger: TGATCCTGGACTTCCAGGCCAACCAGGCCTGCCAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCTACCAGGTATTCCTaGCAGGCCTGGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTATRYS*QAWLAW
Trigger: CCAGGCCAACCAGGCCTGCCAGGAATACCTGGTAGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCCTGGCTCTCCCTTTaGTCCTGGGAAGCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSWLSL*SWEAWW
Trigger: CCACCAGGCTTCCCAGGACCAAAGGGAGAGCCAGGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCTGGAGGCCCTACTaGGCCAGGTTGTCCATTTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPWRPY*ARLSIW
Trigger: CCAAATGGACAACCTGGCCCAGTAGGGCCTCCAGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGGCCTATTGGCCCTaGAGTCCCTGGTGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLAYWP*SPWWSW
Trigger: CCAGGACCACCAGGGACTCCAGGGCCAATAGGCCAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGGCCAGGGAGACCTaGCTGACCTTGCATGCCATC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRARET*LTLHAI
Trigger: GATGGCATGCAAGGTCAGCCAGGTCTCCCTGGCCCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCAATGTTTCCTTTTaGTCCAGGAGGTCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTNVSF*SRRSCK
Trigger: CTTACAGGACCTCCTGGACCAAAAGGAAACATTGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAGTCCTGGTGTTCCTaGGAATCCAGGCAGGCCCGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKSWCS*ESRQAR
Trigger: CCGGGCCTGCCTGGATTCCCAGGAACACCAGGACTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCATTCATACCTTTTaGTCCAGGAAGTCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTIHTF*SRKSWC
Trigger: ACACCAGGACTTCCTGGACCAAAAGGTATGAATGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCGTCCTGGATCTCCTaGAGGGCCAATTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTASWIS*RANWTW
Trigger: CCAGGTCCAATTGGCCCTCCAGGAGATCCAGGACGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATGTACCTGGTGGACCTaGTCTCCCAGGAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTCTWWT*SPRRAL
Trigger: CAAGGCCCTCCTGGGAGACCAGGTCCACCAGGTACA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACATCCAGGGATACCTTaGGGTCCTGGAGCCCCATCA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHPGIP*GPGAPS
Trigger: TGATGGGGCTCCAGGACCTCAAGGTATCCCTGGATG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGACCAGGTGGGCCCTaGAGACCTTGTTCGCCTTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPGGP*RPCSPF
Trigger: AAAAGGCGAACAAGGTCTTCAGGGCCCACCTGGTCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCAATATCACCCTTTTaGCCCTTTTCACCATCTCTT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPISPF*PFSPSL
Trigger: AAGAGATGGTGAAAAGGGTCAAAAGGGTGATATTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCAGGGAGACCTGGCTaGCCTTGCATGCCATCATCA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGRPG*PCMPSS
Trigger: TGATGATGGCATGCAAGGTCAGCCAGGTCTCCCTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACATGTCCCTCGCCCATaGCATTCGATGAAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHVPRP*HSMKGA
Trigger: CGCTCCCTTCATCGAATGTCATGGGCGAGGGACATG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGCTGGCCCAGGAATaGCATCTTGACCTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLLAQE*HLDLAC
Trigger: GCAAGCCAGGTCAAGATGGCATTCCTGGGCCAGCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGCCTGGGAGTCCATTaGGTCCTGGATCTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSLGVH*VLDLLE
Trigger: CTCCAGGAGATCCAGGACGCAATGGACTCCCAGGCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGTCCTGGAGGTCCTTaGAATCCATCTGGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPGGP*NPSGPG
Trigger: CCCAGGACCAGATGGATTGCAAGGACCTCCAGGACC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGCGACGAAGGCAGCTaGCAGCCGTACCCAAGTCTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSDEGS*QPYPSL
Trigger: AAGACTTGGGTACGGCTGGCAGCTGCCTTCGTCGCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCCCCCTTCATACCTaGGATCCCAGGAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFPLHT*DPRRSW
Trigger: CCAGGACCTCCTGGGATCCCAGGTATGAAGGGGGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGACCAGGTATTCCTaGAGGTCCAGGAGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRTRYS*RSRRPS
Trigger: AGAGGGCCTCCTGGACCTCCAGGAATACCTGGTCCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGATTTCATCTCTGGATaGCAACTGGGGGCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDFISG*QLGARG
Trigger: CCCCCTGGCCCCCAGTTGCCATCCAGAGATGAAATC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAAGCCTGGAGCACCTaGAGGTCCAGGTATGCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKAWST*RSRYAW
Trigger: CCAGGCATACCTGGACCTCCAGGTGCTCCAGGCTTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGTCACCCTTAGACCCTaGAAAGCCTGGAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTVTLRP*KAWSTW
Trigger: CCAGGTGCTCCAGGCTTTCCAGGGTCTAAGGGTGAC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCGCCTATGGGGCCTaGAGGCCCAAAACCAACTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFAYGA*RPKTNW
Trigger: CCAGTTGGTTTTGGGCCTCCAGGCCCCATAGGCGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTGGTAATCCCGGCTaGCCTGGATTTCCTGCCACA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGNPG*PGFPAT
Trigger: TGTGGCAGGAAATCCAGGCCAGCCGGGATTACCAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCTTTAGGACCAGGTaGTCCAGGAGGCCCAATCCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTFRTR*SRRPNP
Trigger: GGGATTGGGCCTCCTGGACCACCTGGTCCTAAAGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGAAGACCAATTCCTaGCAGCCCTGGAGGCCCTAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLKTNS*QPWRPY
Trigger: GTAGGGCCTCCAGGGCTGCCAGGAATTGGTCTTCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCTGGTGGTCCTGGTaGTCCCTGAAGACCAATTCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPWWSW*SLKTNS
Trigger: GGAATTGGTCTTCAGGGACCACCAGGACCACCAGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGTCCAGGTGGGCCTaGAGGTCCCATCATACCCAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRSRWA*RSHHTH
Trigger: ATGGGTATGATGGGACCTCCAGGCCCACCTGGACCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGTCCTGTAAGTCCTaGTGGACCAGGGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRSCKS*WTRETR
Trigger: CCTGGTCTCCCTGGTCCACCAGGACTTACAGGACCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAAACCTGGAGGACCTaGTCTCCCAGGAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKTWRT*SPRRAL
Trigger: CAAGGCCCTCCTGGGAGACCAGGTCCTCCAGGTTTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGACCTGGGTATCCTTaGTTACCCTTTGGTCCTGGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPGYP*LPFGPG
Trigger: GCCAGGACCAAAGGGTAATCAAGGATACCCAGGTCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGTCTTTTCTGTTCGCTaGTCTGCCCAGGTGGACCAG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTVFSVR*SAQVDQ
Trigger: CTGGTCCACCTGGGCAGATCAGCGAACAGAAAAGAC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCAGTTCCAATACAGTTaGAGCAAGTATCACCTTTGT +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHQFQYS*SKYHLC
Trigger: ACAAAGGTGATACTTGCTTCAACTGTATTGGAACTG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTCCCACCGACCCTTTaGTACCTGGGTTTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLPPTL*YLGFLD
Trigger: ATCCAGGAAACCCAGGTATCAAAGGGTCGGTGGGAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGACCTTCCAAAGCTTaGCCAGGAGAACCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPSKA*PGEPGG
Trigger: TCCTCCTGGTTCTCCTGGTCAAGCTTTGGAAGGTCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGTACCTGGTGGACCTTaGAAACCTGGAGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTVPGGP*KPGGPG
Trigger: ACCAGGTCCTCCAGGTTTTCAAGGTCCACCAGGTAC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTGACTGAGGTTTGTTaGACATGTCTGACATATCAA +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLTEVC*TCLTYQ
Trigger: TTGATATGTCAGACATGTTCAACAAACCTCAGTCAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAGGAAAGCCCGGACTaGCTGGAAATCCACGTTCTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQESPD*LEIHVL
Trigger: GAGAACGTGGATTTCCAGGCAGTCCGGGCTTTCCTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGGAGGTCCAGGTATaGCTGGCAATCCTTTCGGAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLEVQV*LAILSD
Trigger: GTCCGAAAGGATTGCCAGGCATACCTGGACCTCCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAGGAGCACCACTCCTaGCAGGAATTCCCAAAGGTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQEHHS*QEFPKV
Trigger: GACCTTTGGGAATTCCTGGCAGGAGTGGTGCTCCTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCACTCAGTCCAGGTTaGCCTGGGTCTCCAGGTAAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPLSPG*PGSPGN
Trigger: ATTACCTGGAGACCCAGGGCAACCTGGACTGAGTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGACCTGGAAGTCCAATaGCTGAAACCCCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDLEVQ*LKPQAL
Trigger: GAGAGCCTGGGGTTTCAGGCATTGGACTTCCAGGTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACATCCCAGGAAGACCTaGTGTCCCTGGAAATCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHPRKT*CPWKSR
Trigger: CCTGGATTTCCAGGGACACCAGGTCTTCCTGGGATG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCTGCCTGGACTACCTaGCAAACCAGGCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSAWTT*QTRLSW
Trigger: CCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGTCCCTGGTGGTCCTaGTGGTCCCTGAAGACCAAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSPWWS*WSLKTN
Trigger: ATTGGTCTTCAGGGACCACCAGGACCACCAGGGACT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGAGTCCAGGAGGTCCTaGGATTCCAAAGCCTGGTTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTESRRS*DSKAWL
Trigger: CAACCAGGCTTTGGAATCCCAGGACCTCCTGGACTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGTCCAGAAAGTCCTaGGAGTCCAGGAGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLSRKS*ESRRSW
Trigger: CCAGGACCTCCTGGACTCCCAGGACTTTCTGGACAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACATTCCTGGGAATCCTaGAACACCAGGGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHSWES*NTRETR
Trigger: CCTGGTCTCCCTGGTGTTCCAGGATTCCCAGGAATG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGGCCAGTGGAGCCTaGTACTCCAATGGGTCCTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRASGA*YSNGSF
Trigger: AAAGGACCCATTGGAGTACCAGGCTCCACTGGCCCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGAGTCCATTGCGTCCTaGATCTCCTGGAGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTESIAS*ISWRAN
Trigger: ATTGGCCCTCCAGGAGATCCAGGACGCAATGGACTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATGCACCATCAAAGCCTaGGAGTCCATTGCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTCTIKA*ESIASW
Trigger: CCAGGACGCAATGGACTCCCAGGCTTTGATGGTGCA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAATCCATCTGGTCCTaGGGGACCATCCAATCCACG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQSIWS*GTIQST
Trigger: CGTGGATTGGATGGTCCCCCAGGACCAGATGGATTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCATGTTCATTGGCATaGGCTCTGGGGTGGAAAGCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPCSLA*ALGWKA
Trigger: GGCTTTCCACCCCAGAGCCCATGCCAATGAACATGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGGTTCCATGTTCATTaGCATGGGCTCTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGFHVH*HGLWGG
Trigger: TCCACCCCAGAGCCCATGCCAATGAACATGGAACCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGGCCTGGAGGCCCTaGAATGCCAGTTCCAATACA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLAWRP*NASSNT
Trigger: TGTATTGGAACTGGCATTTCAGGGCCTCCAGGCCAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGACCAGGTGTTCCTTTaGAACCTGGGAATCCTGGTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDQVFL*NLGILV
Trigger: CACCAGGATTCCCAGGTTTCAAAGGAACACCTGGTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATGGAAGTCCAATGCCTaGAACCCCAGGCTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTWKSNA*NPRLSF
Trigger: AAAGGAGAGCCTGGGGTTTCAGGCATTGGACTTCCA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATACAATACTCTGTCCTaGAGGACCAGGCAACCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTYNTLS*RTRQPR
Trigger: CCTGGGTTGCCTGGTCCTTCAGGACAGAGTATTGTA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGGTTTACCTCTTTTaGCTGCCTCTCCTGGCTCAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLVYLF*LPLLAH
Trigger: GTGAGCCAGGAGAGGCAGGCAAAAGAGGTAAACCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGCCACACCTTGTATaGCTTTTTCGCCTATGGGGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLPHLV*LFRLWG
Trigger: GCCCCATAGGCGAAAAAGGCATACAAGGTGTGGCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCACTTCACCATCTCTaGCTGGACTACCTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPLHHL*LDYLAN
Trigger: GTTTGCCAGGTAGTCCAGGCAGAGATGGTGAAGTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCAGGAAATCTGGATaGATTGGTCCAGGAGGACCT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPRKSG*IGPGGP
Trigger: AGGTCCTCCTGGACCAATGCATCCAGATTTCCTGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCTCCCTTTTGTCCTaGTGGCCCAGGAATGCCATC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFSLLS*WPRNAI
Trigger: GATGGCATTCCTGGGCCAGCAGGACAAAAGGGAGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAGACCTGGTGTCCCTaGAAATCCAGGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKTWCP*KSRKSR
Trigger: CCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTGGGATTCCTGGTTaGCCAGTCTCTCCATCTTTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPGIPG*PVSPSL
Trigger: CAAAGATGGAGAGACTGGCCAACCAGGAATCCCAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGTTATGGTCTGGCCTaGATCTCCTTTAGGACCTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGYGLA*ISFRTW
Trigger: CCAGGTCCTAAAGGAGATCCAGGCCAGACCATAACC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGCTGGGTTATGGTCTaGCCTGGATCTCCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGWVMV*PGSPLG
Trigger: TCCTAAAGGAGATCCAGGCCAGACCATAACCCAGCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCACCATCTCTGCCTaGACTACCTGGCAAACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFTISA*TTWQTR
Trigger: CCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATGTTCCTTTGAAACCTaGGAATCCTGGTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTCSFET*ESWWPR
Trigger: CCTGGGCCACCAGGATTCCCAGGTTTCAAAGGAACA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTCGCCTTTGACACCTaGAAATCCAGGGACACCTGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFAFDT*KSRDTC
Trigger: GCAGGTGTCCCTGGATTTCCAGGTGTCAAAGGCGAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGATACCTGGGTTTCCTaGATATCCAGGCAGACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDTWVS*ISRQTR
Trigger: CCTGGTCTGCCTGGATATCCAGGAAACCCAGGTATC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCCCTTTTGTCCTGCTaGCCCAGGAATGCCATCTTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSLLSC*PRNAIL
Trigger: CAAGATGGCATTCCTGGGCCAGCAGGACAAAAGGGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCCCAGGGTTTCCTTTaGGACCTTCCAAAGCTTGAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTAQGFL*DLPKLD
Trigger: GTCAAGCTTTGGAAGGTCCCAAAGGAAACCCTGGGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCCGGGAGTCCTGGTaGTCCTTGATCTCCTTTCAA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTRESW*SLISFQ
Trigger: TTGAAAGGAGATCAAGGACCACCAGGACTCCCGGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGGTCCTTTCATTCCTaGGAATCCTGGAACACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGSFHS*ESWNTR
Trigger: CCTGGTGTTCCAGGATTCCCAGGAATGAAAGGACCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCCTTGCAATCCATCTaGTCCTGGGGGACCATCCAA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSLQSI*SWGTIQ
Trigger: TTGGATGGTCCCCCAGGACCAGATGGATTGCAAGGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAAAGCTGTACGAATTaGCATAGTAATTGCATGTCC +
Preference number: 4 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKSCTN*HSNCMS
Trigger: GGACATGCAATTACTATGCCAATTCGTACAGCTTTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGTCCTGGTGGTCCTTaGTCTCCTTTCAAACCAGGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSPGGP*SPFKPG
Trigger: ACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCCCATGACATTCGATaGAGGGAGCGGAACGAAATT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTAHDIR*RERNEI
Trigger: AATTTCGTTCCGCTCCCTTCATCGAATGTCATGGGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTTACCTCTTTTGCCTaGCTCTCCTGGCTCACCCTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFTSFA*LSWLTL
Trigger: AAGGGTGAGCCAGGAGAGGCAGGCAAAAGAGGTAAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGGCCTGGATTTCCTaGCACACCTTGTATGCCTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLAWIS*HTLYAF
Trigger: AAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACATCTTGACCTGGCTTaGCTTTTTCACCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHLDLA*LFHQEV
Trigger: GACCTCCTGGTGAAAAAGGCAAGCCAGGTCAAGATG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCGTGGGCATTGTGGTaGTTCTGTTGTTTGACTGTG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPWALW*FCCLTV
Trigger: CACAGTCAAACAACAGAAGCACCACAATGCCCACGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGGCCAGAGCCTTCTaGTCCTGCACTTGTATGCAT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLARAF*SCTCMH
Trigger: ATGCATACAAGTGCAGGAGCAGAAGGCTCTGGCCAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCCTTTTGGTCCTGGTaGCCCTGGAATTCCATCATC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSFWSW*PWNSII
Trigger: GATGATGGAATTCCAGGGCCACCAGGACCAAAAGGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGATTCCTTTTGGTCCTaGTGGCCCTGGAATTCCATC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDSFWS*WPWNSI
Trigger: GATGGAATTCCAGGGCCACCAGGACCAAAAGGAATC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTTGCCTGCCTCTCCTaGCTCACCCTTTTCACCTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTFACLS*LTLFTF
Trigger: AAAGGTGAAAAGGGTGAGCCAGGAGAGGCAGGCAAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACTCCTCGCTCTCCTTaGAGTCCTTTATCACCTGGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTPRSP*SPLSPG
Trigger: TCCAGGTGATAAAGGACTCCAAGGAGAGCGAGGAGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAATCCCAGGGATACCTaGTTCTCCTTTGCTACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTNPRDT*FSFATR
Trigger: CCTGGTAGCAAAGGAGAACCAGGTATCCCTGGGATT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGGTCCCGGAATTCCTaGAAAACCTTTAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRSRNS*KTFRTR
Trigger: CCTGGTCCTAAAGGTTTTCCAGGAATTCCGGGACCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTTTACTTCCTTTCTaGCCAGGTAACCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPLLPF*PGNPGE
Trigger: CTCTCCTGGGTTACCTGGCCAGAAAGGAAGTAAAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACGACCCTTTGATACCTaGGTTTCCTGGATATCCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRPFDT*VSWISR
Trigger: CCTGGATATCCAGGAAACCCAGGTATCAAAGGGTCG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAAGCCTGGTTGACCTaGTTCTCCCTTTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKAWLT*FSLLSC
Trigger: GCAGGACAAAAGGGAGAACCAGGTCAACCAGGCTTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCTTCTGTACCTGGTaGACCTTGAAAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTFCTW*TLKTWR
Trigger: CCTCCAGGTTTTCAAGGTCCACCAGGTACAGAAGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGCCTGGTACTCCAATaGGTCCTTTCATTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSLVLQ*VLSFLG
Trigger: TCCCAGGAATGAAAGGACCCATTGGAGTACCAGGCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATTGTCCAGGAATCCCTaGAGGTCCAGGATCTCCTTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLSRNP*RSRISF
Trigger: AAAGGAGATCCTGGACCTCCAGGGATTCCTGGACAA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCCCCGTGGGCATTGTaGTGCTTCTGTTGTTTGACT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSPWAL*CFCCLT
Trigger: AGTCAAACAACAGAAGCACCACAATGCCCACGGGGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATGAACTGTTCCCCGTaGGCATTGTGGTGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTMNCSP*ALWCFC
Trigger: ACAGAAGCACCACAATGCCCACGGGGAACAGTTCAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCATGGGCTCTGGGGTaGAAAGCCAGTAAGAATAGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTAWALG*KASKNS
Trigger: ACTATTCTTACTGGCTTTCCACCCCAGAGCCCATGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACGACTAATGAATGGCTaGATGCTCTGTCCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRLMNG*MLCPFR
Trigger: CCTGAAGGGACAGAGCATCCAGCCATTCATTAGTCG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCCTGAGGACAGTGTaGAATCTGAATAGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPLRTV*NLNSLA
Trigger: AGCCAGACTATTCAGATTCCACACTGTCCTCAGGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATTCCAAAGCCTGGTTaGCCTGGTTCTCCCTTTTGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTIPKPG*PGSPFC
Trigger: ACAAAAGGGAGAACCAGGTCAACCAGGCTTTGGAAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTCTTCATGCATACTTaGCATCGGCTAATACGCGTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLFMHT*HRLIRV
Trigger: GACGCGTATTAGCCGATGTCAAGTATGCATGAAGAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATACCTGGTTCTCCTTTaGTACCAGGTATTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTYLVLL*YQVFLA
Trigger: TGCCAGGAATACCTGGTAGCAAAGGAGAACCAGGTA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCCAGGTTGTCCATTTaGTCCAACATCACCTTTTGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTARLSI*SNITFW
Trigger: CCAAAAGGTGATGTTGGACCAAATGGACAACCTGGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAATGCCATCTTGACCTaGCTTGCCTTTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTNAILT*LAFFTR
Trigger: CCTGGTGAAAAAGGCAAGCCAGGTCAAGATGGCATT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGACATATCAACAGTaGCCAGCCAAAAGCTGTACG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLTYQQ*PAKSCT
Trigger: CGTACAGCTTTTGGCTGGCCACTGTTGATATGTCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAGTCTCTCCATCTTTaGCTGGTTTACCTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQSLHL*LVYLFC
Trigger: GCAAAAGAGGTAAACCAGGCAAAGATGGAGAGACTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGAGCCTTCTGCTCCTaGACTTGTATGCATCATGAA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRAFCS*TCMHHE
Trigger: TTCATGATGCATACAAGTGCAGGAGCAGAAGGCTCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAATTGGCATAGTAATTaGATGTCCCTCGCCCATGAC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTNWHSN*MSLAHD
Trigger: GTCATGGGCGAGGGACATGCAATTACTATGCCAATT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACGCCTTTTTCACCTTTaGGTCCCTGGAAATTTAAGC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTRLFHL*VPGNLS
Trigger: GCTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGCG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCATTCATACCTTTTaGTCCAGGAAGTCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTIHTF*SRKSWC
Trigger: ACACCAGGACTTCCTGGACCAAAAGGTATGAATGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACATCGACTAATGAATaGCTGGATGCTCTGTCCCTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTSTNE*LDALSL
Trigger: AAGGGACAGAGCATCCAGCCATTCATTAGTCGATGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCAATATCACCCTTTTaGCCCTTTTCACCATCTCTT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPISPF*PFSPSL
Trigger: AAGAGATGGTGAAAAGGGTCAAAAGGGTGATATTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATCACCTTTGGGTCCCTaGAAATTTAAGCCCATATTC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSPLGP*KFKPIF
Trigger: GAATATGGGCTTAAATTTCCAGGGACCCAAAGGTGA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACAGTTCCAATACAGTTaGAGCAAGTATCACCTTTGT +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTQFQYS*SKYHLC
Trigger: ACAAAGGTGATACTTGCTTCAACTGTATTGGAACTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR TCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTGACTGAGGTTTGTTaGACATGTCTGACATATCAA +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLTEVC*TCLTYQ
Trigger: TTGATATGTCAGACATGTTCAACAAACCTCAGTCAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR GCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTCCTTTTATACCACTaGAGTCACATTTTGATCCAG +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLLLYH*SHILIQ
Trigger: CTGGATCAAAATGTGACTGCAGTGGTATAAAAGGAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CCA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAAAGCTGTACGAATTaGCATAGTAATTGCATGTCC +
Preference number: 4 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKSCTN*HSNCMS
Trigger: GGACATGCAATTACTATGCCAATTCGTACAGCTTTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 90 bp TTAAGACCTGGCCGGCCAGGGTTACCCGGGAGTCCTGGTGGTCCTTaGTCTCCTTTCAAACCAGGTAAGCCTGGCTGCCCAGGTGGGCCT +
Preference number: 5 (lower is better)
Translates to: LRPGRPGLPGSPGGP*SPFKPGKPGCPGGP
Trigger: AGGCCCACCTGGGCAGCCAGGCTTACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCCGGGTAACCCTGGCCGGCCAGGTCTTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 90 bp GACATCCCCAGGGTCACCCTTAGACCCTGGAAAGCCTGGAGCACCTaGAGGTCCAGGTATGCCTGGCAATCCTTTCGGACCAGTTATCCC +
Preference number: 5 (lower is better)
Translates to: DIPRVTLRPWKAWST*RSRYAWQSFRTSYP
Trigger: GGGATAACTGGTCCGAAAGGATTGCCAGGCATACCTGGACCTCCAGGTGCTCCAGGCTTTCCAGGGTCTAAGGGTGACCCTGGGGATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp AGGCTCTCCCTTACCGCCCTTTTCTCCTGCAGGGCCAGGGAGACCTaGCTGACCTTGCATGCCATCATCACCTTTAAGACCAGGAGCACC +
Preference number: 5 (lower is better)
Translates to: RLSLTALFSCRARET*LTLHAIITFKTRST
Trigger: GGTGCTCCTGGTCTTAAAGGTGATGATGGCATGCAAGGTCAGCCAGGTCTCCCTGGCCCTGCAGGAGAAAAGGGCGGTAAGGGAGAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 90 bp GATACCTCCATTTCCAGGGGGTCCACGAGGACCTTCTGTACCTGGTaGACCTTGAAAACCTGGAGGACCTGGTCTCCCAGGAGGGCCTTG +
Preference number: 5 (lower is better)
Translates to: DTSISRGSTRTFCTW*TLKTWRTWSPRRAL
Trigger: CAAGGCCCTCCTGGGAGACCAGGTCCTCCAGGTTTTCAAGGTCCACCAGGTACAGAAGGTCCTCGTGGACCCCCTGGAAATGGAGGTATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp TGGGGGCCCAGTAAGACCTGGTTCCCCATCAGGGCCAGTGGAGCCTaGTACTCCAATGGGTCCTTTCATTCCTGGGAATCCTGGAACACC +
Preference number: 5 (lower is better)
Translates to: WGPSKTWFPIRASGA*YSNGSFHSWESWNT
Trigger: GGTGTTCCAGGATTCCCAGGAATGAAAGGACCCATTGGAGTACCAGGCTCCACTGGCCCTGATGGGGAACCAGGTCTTACTGGGCCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS GCA 90 bp GGCCTGGAAGTCCAGGATCACCTGGAAGACCCACTTCACCATCTCTaGCTGGACTACCTGGCAAACCAGGCTTTCCTGGCTGGGTTATGG +
Preference number: 5 (lower is better)
Translates to: GLEVQDHLEDPLHHL*LDYLANQAFLAGLW
Trigger: CCATAACCCAGCCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAAGTGGGTCTTCCAGGTGATCCTGGACTTCCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp ACCAGGATATCCAGGAGGACCAGGGGGACCCACAACTGCTGTTCCTaGAGGTCCAGGAAAGCCAGGTGGACCTTGTATTCCAGGAAATCC +
Preference number: 5 (lower is better)
Translates to: TRISRRTRGTHNCCS*RSRKARWTLYSRKS
Trigger: GGATTTCCTGGAATACAAGGTCCACCTGGCTTTCCTGGACCTCCAGGAACAGCAGTTGTGGGTCCCCCTGGTCCTCCTGGATATCCTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp AGGGATACCTGGTTCTCCTTTGCTACCAGGTATTCCTGGCAGGCCTaGTTGGCCTGGAAGTCCAGGATCACCTGGAAGACCCACTTCACC +
Preference number: 5 (lower is better)
Translates to: RDTWFSFATRYSWQA*LAWKSRITWKTHFT
Trigger: GGTGAAGTGGGTCTTCCAGGTGATCCTGGACTTCCAGGCCAACCAGGCCTGCCAGGAATACCTGGTAGCAAAGGAGAACCAGGTATCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp AGGAGCACCACTCCTGCCAGGAATTCCCAAAGGTCCAGGTGGGCCTaGAGGTCCCATCATACCCATTTCGCCTTTGACACCTGGAAATCC +
Preference number: 5 (lower is better)
Translates to: RSTTPARNSQRSRWA*RSHHTHFAFDTWKS
Trigger: GGATTTCCAGGTGTCAAAGGCGAAATGGGTATGATGGGACCTCCAGGCCCACCTGGACCTTTGGGAATTCCTGGCAGGAGTGGTGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS GCA 90 bp TTGGTCCAACATCACCTTTTGGTCCAGGTAGCCCATCCAAGCCAGTaGGTCCTGGAGGACCTGAAGGTCCTGGGAAACCACGATCACCTT +
Preference number: 5 (lower is better)
Translates to: LVQHHLLVQVAHPSQ*VLEDLKVLGNHDHL
Trigger: AAGGTGATCGTGGTTTCCCAGGACCTTCAGGTCCTCCAGGACGCACTGGCTTGGATGGGCTACCTGGACCAAAAGGTGATGTTGGACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp TGGAAGTCCAGGATCACCTGGAAGACCCACTTCACCATCTCTGCCTaGACTACCTGGCAAACCAGGCTTTCCTGGCTGGGTTATGGTCTG +
Preference number: 5 (lower is better)
Translates to: WKSRITWKTHFTISA*TTWQTRLSWLGYGL
Trigger: CAGACCATAACCCAGCCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAAGTGGGTCTTCCAGGTGATCCTGGACTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCACCAGGCTCTCCTTaGGGGCCAGGGAGTCCTGGC +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPPGSP*GPGSPG
Trigger: GCCAGGACTCCCTGGCCCCAAAGGAGAGCCTGGTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 90 bp ATACCTGGTTCTCCTTTGCTACCAGGTATTCCTGGCAGGCCTGGTTaGCCTGGAAGTCCAGGATCACCTGGAAGACCCACTTCACCATCT +
Preference number: 5 (lower is better)
Translates to: IPGSPLLPGIPGRPG*PGSPGSPGRPTSPS
Trigger: AGATGGTGAAGTGGGTCTTCCAGGTGATCCTGGACTTCCAGGCCAACCAGGCCTGCCAGGAATACCTGGTAGCAAAGGAGAACCAGGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS TCA 90 bp GACCTGGGTATCCTTGATTACCCTTTGGTCCTGGCAGTGGTGACATaGTTATACTGCCTGGTTCCCCCTTCATACCTGGGATCCCAGGAG +
Preference number: 5 (lower is better)
Translates to: DLGILDYPLVLAVVT*LYCLVPPSYLGSQE
Trigger: CTCCTGGGATCCCAGGTATGAAGGGGGAACCAGGCAGTATAATCATGTCACCACTGCCAGGACCAAAGGGTAATCAAGGATACCCAGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS TCA 90 bp AGGAGGACCTGGGTATCCTTGATTACCCTTTGGTCCTGGCAGTGGTaGCATGATTATACTGCCTGGTTCCCCCTTCATACCTGGGATCCC +
Preference number: 5 (lower is better)
Translates to: RRTWVSLITLWSWQW*HDYTAWFPLHTWDP
Trigger: GGGATCCCAGGTATGAAGGGGGAACCAGGCAGTATAATCATGTCACCACTGCCAGGACCAAAGGGTAATCAAGGATACCCAGGTCCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGCCAGGTTGGCCTATaGGCCCTGGAGTCCCTGGTG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSQVGL*ALESLV
Trigger: CACCAGGGACTCCAGGGCCAATAGGCCAACCTGGCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS TCA 90 bp TTGGGACCAGGTGGGCCTTGTATTCCAGGAGGACCTGGGTATCCTTaGTTACCCTTTGGTCCTGGCAGTGGTGACATGATTATACTGCCT +
Preference number: 5 (lower is better)
Translates to: LGPGGPCIPGGPGYP*LPFGPGSGDMIILP
Trigger: AGGCAGTATAATCATGTCACCACTGCCAGGACCAAAGGGTAATCAAGGATACCCAGGTCCTCCTGGAATACAAGGCCCACCTGGTCCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCAGGAGAGCCAGGTaGTCCAGGAAATCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPRRAR*SRKSRR
Trigger: CCTCCTGGATTTCCTGGACAACCTGGCTCTCCTGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCTCCTGGAGGGCCAATaGGACCTGGTAGGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHLLEGQ*DLVGLE
Trigger: CTCAAGGCCTACCAGGTCCAATTGGCCCTCCAGGAG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATCCCAGCTTGTCCTTaGTCCCCCTTCTCTCCAGGG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHIPACP*SPFSPG
Trigger: CCCTGGAGAGAAGGGGGACAAAGGACAAGCTGGGAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGACCAGGATTACCCTaGGGACCTGGGAGTCCTGGT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHRPGLP*GPGSPG
Trigger: ACCAGGACTCCCAGGTCCCAAGGGTAATCCTGGTCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGACCAGGTTCACCCTTaGGGCCAGGAAGACCTGGAA +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDQVHP*GQEDLE
Trigger: TTCCAGGTCTTCCTGGCCCAAAGGGTGAACCTGGTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGCCCGGTTGACCTTTaGCTCCAGGGTTTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPVDL*LQGFLV
Trigger: TACCAGGAAACCCTGGAGCAAAAGGTCAACCGGGCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAGCCTGGGAGTCCATaGCGTCCTGGATCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKPGSP*RPGSPG
Trigger: TCCAGGAGATCCAGGACGCAATGGACTCCCAGGCTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 90 bp GATCTCCTTTCTGAAATTCTATGTCAATTGGTCTTTTCTGTTCGCTaGTCTGCCCAGGTGGACCAGGTGGGCCCTGAAGACCTTGTTCGC +
Preference number: 5 (lower is better)
Translates to: DLLSEILCQLVFSVR*SAQVDQVGPEDLVR
Trigger: GCGAACAAGGTCTTCAGGGCCCACCTGGTCCACCTGGGCAGATCAGCGAACAGAAAAGACCAATTGACATAGAATTTCAGAAAGGAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTGGTTTACCTCTTTaGCCTGCCTCTCCTGGCTCA +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPGLPL*PASPGS
Trigger: TGAGCCAGGAGAGGCAGGCAAAAGAGGTAAACCAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCTACTGGGCCAGGTaGTCCATTTGGTCCAACATC +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPYWAR*SIWSNI
Trigger: GATGTTGGACCAAATGGACAACCTGGCCCAGTAGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATACCTGGTTCTCCCTTTaGTCCTGCTGGCCCAGGAAT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHTWFSL*SCWPRN
Trigger: ATTCCTGGGCCAGCAGGACAAAAGGGAGAACCAGGT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTACTCCTCGCTCTCCTaGGAGTCCTTTATCACCTGG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHYSSLS*ESFITW
Trigger: CCAGGTGATAAAGGACTCCAAGGAGAGCGAGGAGTA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCACCAGGCTCTCCTTaGGGGCCAGGGAGTCCTGGC +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPPGSP*GPGSPG
Trigger: GCCAGGACTCCCTGGCCCCAAAGGAGAGCCTGGTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGAGACCTGGCTGACCTaGCATGCCATCATCACCTTT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHETWLT*HAIITF
Trigger: AAAGGTGATGATGGCATGCAAGGTCAGCCAGGTCTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCCAGGAATGCCATCTaGACCTGGCTTGCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPRNAI*TWLAFF
Trigger: GAAAAAGGCAAGCCAGGTCAAGATGGCATTCCTGGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS GCA 90 bp AGAAAAGCCTTCATAGATATGAACTGTTCCCCGTGGGCATTGTGGTaGTTCTGTTGTTTGACTGTGACGTGTGATGAGGAATCCATGGGC +
Preference number: 5 (lower is better)
Translates to: RKAFIDMNCSPWALW*FCCLTVTCDEESMG
Trigger: GCCCATGGATTCCTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGCTTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAAGCCAGGTGGACCTaGTATTCCAGGAAATCCTCG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKARWT*YSRKSS
Trigger: CGAGGATTTCCTGGAATACAAGGTCCACCTGGCTTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATACCTGGTTCTCCTTaGCTACCAGGTATTCCTGGC +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHIPGSP*LPGIPG
Trigger: GCCAGGAATACCTGGTAGCAAAGGAGAACCAGGTAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGCCAGGTTGTCCATTaGGTCCAACATCACCTTTTG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGQVVH*VQHHLL
Trigger: CAAAAGGTGATGTTGGACCAAATGGACAACCTGGCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATACCCATTTCGCCTTaGACACCTGGAAATCCAGGG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHIPISP*TPGNPG
Trigger: CCCTGGATTTCCAGGTGTCAAAGGCGAAATGGGTAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGACCATTCATACCTTTaGGTCCAGGAAGTCCTGGTG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHDHSYL*VQEVLV
Trigger: CACCAGGACTTCCTGGACCAAAAGGTATGAATGGTC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 90 bp GAGAGAAAAGCCTTCATAGATATGAACTGTTCCCCGTGGGCATTGTaGTGCTTCTGTTGTTTGACTGTGACGTGTGATGAGGAATCCATG +
Preference number: 5 (lower is better)
Translates to: ERKAFIDMNCSPWAL*CFCCLTVTCDEESM
Trigger: CATGGATTCCTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGCTTTTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGGACCAGGTGGGCCTaGTATTCCAGGAGGACCTGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGTRWA*YSRRTW
Trigger: CCAGGTCCTCCTGGAATACAAGGCCCACCTGGTCCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCAGTCTCTCCATCTTaGCCTGGTTTACCTCTTTTG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPVSPS*PGLPLL
Trigger: CAAAAGAGGTAAACCAGGCAAAGATGGAGAGACTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAGCCAGGTTGGCCTATaGGCCCTGGAGTCCCTGGTG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTSQVGL*ALESLV
Trigger: CACCAGGGACTCCAGGGCCAATAGGCCAACCTGGCT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAGCCGTACCCAAGTCTaGACCATGGGCTCTTTTATT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSRTQV*TMGSFI
Trigger: AATAAAAGAGCCCATGGTCAAGACTTGGGTACGGCT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCTCTTCATGCATACTaGACATCGGCTAATACGCGT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPLHAY*TSANTR
Trigger: ACGCGTATTAGCCGATGTCAAGTATGCATGAAGAGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATTCGCCTTTTTCACCTTaGGGTCCCTGGAAATTTAAG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHSPFSP*GPWKFK
Trigger: CTTAAATTTCCAGGGACCCAAAGGTGAAAAAGGCGA...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATAAGCAAGTATCACCTTaGTCACCTTTTACTCCTCGC +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHKQVSP*SPFTPR
Trigger: GCGAGGAGTAAAAGGTGACAAAGGTGATACTTGCTT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATATTTCCTGCCACACCTaGTATGCCTTTTTCGCCTAT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHISCHT*YAFFAY
Trigger: ATAGGCGAAAAAGGCATACAAGGTGTGGCAGGAAAT...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCAGGAGAGCCAGGTaGTCCAGGAAATCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPRRAR*SRKSRR
Trigger: CCTCCTGGATTTCCTGGACAACCTGGCTCTCCTGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGTCCAGGATCTCCTTaGATTACAATACTCTGTCCT +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGPGSP*ITILCP
Trigger: AGGACAGAGTATTGTAATCAAAGGAGATCCTGGACC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACTCCTGGAGGGCCAATaGGACCTGGTAGGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTLLEGQ*DLVGLE
Trigger: CTCAAGGCCTACCAGGTCCAATTGGCCCTCCAGGAG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATCCAGTTCCAATACAGTaGAAGCAAGTATCACCTTTG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHPVPIQ*KQVSPL
Trigger: CAAAGGTGATACTTGCTTCAACTGTATTGGAACTGG...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATCCCAGCTTGTCCTTaGTCCCCCTTCTCTCCAGGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTIPACP*SPFSPG
Trigger: CCCTGGAGAGAAGGGGGACAAAGGACAAGCTGGGAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGACCAGGTTCACCCTTaGGGCCAGGAAGACCTGGAA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTDQVHP*GQEDLE
Trigger: TTCCAGGTCTTCCTGGCCCAAAGGGTGAACCTGGTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGCCCGGTTGACCTTTaGCTCCAGGGTTTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPVDL*LQGFLV
Trigger: TACCAGGAAACCCTGGAGCAAAAGGTCAACCGGGCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAAAGCCTGGGAGTCCATaGCGTCCTGGATCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTKPGSP*RPGSPG
Trigger: TCCAGGAGATCCAGGACGCAATGGACTCCCAGGCTT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAACCTGGTTCTCCCTTTaGTCCTGCTGGCCCAGGAAT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTTWFSL*SCWPRN
Trigger: ATTCCTGGGCCAGCAGGACAAAAGGGAGAACCAGGT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATACTCCTCGCTCTCCTaGGAGTCCTTTATCACCTGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTYSSLS*ESFITW
Trigger: CCAGGTGATAAAGGACTCCAAGGAGAGCGAGGAGTA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGAGACCTGGCTGACCTaGCATGCCATCATCACCTTT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTETWLT*HAIITF
Trigger: AAAGGTGATGATGGCATGCAAGGTCAGCCAGGTCTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGAAATCTGGATGCATaGGTCCAGGAGGACCTGGAA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGNLDA*VQEDLE
Trigger: TTCCAGGTCCTCCTGGACCAATGCATCCAGATTTCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCCAGGAATGCCATCTaGACCTGGCTTGCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPRNAI*TWLAFF
Trigger: GAAAAAGGCAAGCCAGGTCAAGATGGCATTCCTGGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGAGTCCTGGTGGTCCTaGATCTCCTTTCAAACCAGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTESWWS*ISFQTR
Trigger: CCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACATGTTCCCCGTGGGCATaGTGGTGCTTCTGTTGTTTG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTCSPWA*WCFCCL
Trigger: CAAACAACAGAAGCACCACAATGCCCACGGGGAACA...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGGCTCTTTTATTTCCTaGTACATACAGGAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHGSFIS*YIQERK
Trigger: TTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp AGTCACTTTCCTATTGCTTTCATAAGGAAGGATGGAGCCCTTGCTCTGGCACATGCAAAGTTACAAACGTaGTTAATGTTGCAGAACATG +
Preference number: 5 (lower is better)
Translates to: SHFPIAFIRKDGALALAHAKLQT*LMLQNM
Trigger: CATGTTCTGCAACATTAACAACGTTTGTAACTTTGC...ATGTGCCAGAGCAAGGGCTCCATCCTTCCTTATGAAAGCAATAGGAAAGTGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATCCTTGATTACCCTTaGGTCCTGGCAGTGGTGACA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTILDYP*VLAVVT
Trigger: TGTCACCACTGCCAGGACCAAAGGGTAATCAAGGAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGCCAGGTTGTCCATTaGGTCCAACATCACCTTTTG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGQVVH*VQHHLL
Trigger: CAAAAGGTGATGTTGGACCAAATGGACAACCTGGCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATACCCATTTCGCCTTaGACACCTGGAAATCCAGGG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTIPISP*TPGNPG
Trigger: CCCTGGATTTCCAGGTGTCAAAGGCGAAATGGGTAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCAGTCTCTCCATCTTaGCCTGGTTTACCTCTTTTG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPVSPS*PGLPLL
Trigger: CAAAAGAGGTAAACCAGGCAAAGATGGAGAGACTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCTCTTCATGCATACTaGACATCGGCTAATACGCGT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPLHAY*TSANTR
Trigger: ACGCGTATTAGCCGATGTCAAGTATGCATGAAGAGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACACTGCAGTCACATTTaGATCCAGAAGAACACCCAT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTHCSHI*IQKNTH
Trigger: ATGGGTGTTCTTCTGGATCAAAATGTGACTGCAGTG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAATTTCCTGCCACACCTaGTATGCCTTTTTCGCCTAT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTISCHT*YAFFAY
Trigger: ATAGGCGAAAAAGGCATACAAGGTGTGGCAGGAAAT...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGTCCAGGATCTCCTTaGATTACAATACTCTGTCCT +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGPGSP*ITILCP
Trigger: AGGACAGAGTATTGTAATCAAAGGAGATCCTGGACC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACACCAGTTCCAATACAGTaGAAGCAAGTATCACCTTTG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTPVPIQ*KQVSPL
Trigger: CAAAGGTGATACTTGCTTCAACTGTATTGGAACTGG...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGGCTCTTTTATTTCCTaGTACATACAGGAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTGSFIS*YIQERK
Trigger: TTTTCTCTCCTGTATGTACAAGGAAATAAAAGAGCC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS-3UTR CAA 90 bp CATTGGCTTTTTCTAATTGAAGGGAGAAGACTAAGCAAATACTGTCTTCTTACAGCAAAGTTACAAACGTaGTTAATGTTGCAGAACATG +
Preference number: 5 (lower is better)
Translates to: HWLFLIEGRRLSKYCLLTAKLQT*LMLQNM
Trigger: CATGTTCTGCAACATTAACAACGTTTGTAACTTTGC...TGTAAGAAGACAGTATTTGCTTAGTCTTCTCCCTTCAATTAGAAAAAGCCAATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 72 bp GGCCGGCCAGGGTTACCCGGGAGTCCTGGTGGTCCTTaGTCTCCTTTCAAACCAGGTAAGCCTGGCTGCCCA +
Preference number: 6 (lower is better)
Translates to: GRPGLPGSPGGP*SPFKPGKPGCP
Trigger: TGGGCAGCCAGGCTTACCTGGTTTGAAAGGAGATCAAGGACCACCAGGACTCCCGGGTAACCCTGGCCGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 72 bp GTGGTCCTGGAGGACCACTTGGCCCTGATATACCCTTaGGACCAGGTGGGCCTTGTATTCCAGGAGGACCTG +
Preference number: 6 (lower is better)
Translates to: VVLEDHLALIYP*DQVGLVFQEDL
Trigger: CAGGTCCTCCTGGAATACAAGGCCCACCTGGTCCCAAGGGTATATCAGGGCCAAGTGGTCCTCCAGGACCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp TCCAGGAGGACCAGGGGGACCCACAACTGCTGTTCCTaGAGGTCCAGGAAAGCCAGGTGGACCTTGTATTCC +
Preference number: 6 (lower is better)
Translates to: SRRTRGTHNCCS*RSRKARWTLYS
Trigger: GGAATACAAGGTCCACCTGGCTTTCCTGGACCTCCAGGAACAGCAGTTGTGGGTCCCCCTGGTCCTCCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp AGGGAGACCAGGATCTCCTTTCATTCCATTAAGACCTaGCCGGCCAGGGTTACCCGGGAGTCCTGGTGGTCC +
Preference number: 6 (lower is better)
Translates to: RETRISFHSIKT*PARVTRESWWS
Trigger: GGACCACCAGGACTCCCGGGTAACCCTGGCCGGCCAGGTCTTAATGGAATGAAAGGAGATCCTGGTCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp TTGCGCCCTCCTGCACCATCAAAGCCTGGGAGTCCATaGCGTCCTGGATCTCCTGGAGGGCCAATTGGACCT +
Preference number: 6 (lower is better)
Translates to: LRPPAPSKPGSP*RPGSPGGPIGP
Trigger: AGGTCCAATTGGCCCTCCAGGAGATCCAGGACGCAATGGACTCCCAGGCTTTGATGGTGCAGGAGGGCGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp GAGGTCCCATTAAACCTGGTGGTCCTGGAGGACCACTaGGCCCTGATATACCCTTGGGACCAGGTGGGCCTT +
Preference number: 6 (lower is better)
Translates to: EVPLNLVVLEDH*ALIYPWDQVGL
Trigger: AAGGCCCACCTGGTCCCAAGGGTATATCAGGGCCAAGTGGTCCTCCAGGACCACCAGGTTTAATGGGACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CAA 90 bp TCAGTCCAGGTTGCCCTGGGTCTCCAGGTAATCCCTGGTAGCCTTTaGGTCCTGAAAGTCCAGGAATACCTGGTAAGCCGGGCTCACCCT +
Preference number: 6 (lower is better)
Translates to: SVQVALGLQVIPGSL*VLKVQEYLVSRAHP
Trigger: AGGGTGAGCCCGGCTTACCAGGTATTCCTGGACTTTCAGGACCAAAAGGCTACCAGGGATTACCTGGAGACCCAGGGCAACCTGGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS GCA 72 bp GTCCAGGATCACCTGGAAGACCCACTTCACCATCTCTaGCTGGACTACCTGGCAAACCAGGCTTTCCTGGCT +
Preference number: 6 (lower is better)
Translates to: VQDHLEDPLHHL*LDYLANQAFLA
Trigger: AGCCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAAGTGGGTCTTCCAGGTGATCCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp AGGATCACCTGGAAGACCCACTTCACCATCTCTGCCTaGACTACCTGGCAAACCAGGCTTTCCTGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: RITWKTHFTISA*TTWQTRLSWLG
Trigger: ACCCAGCCAGGAAAGCCTGGTTTGCCAGGTAGTCCAGGCAGAGATGGTGAAGTGGGTCTTCCAGGTGATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp ACTCCTGCCAGGAATTCCCAAAGGTCCAGGTGGGCCTaGAGGTCCCATCATACCCATTTCGCCTTTGACACC +
Preference number: 6 (lower is better)
Translates to: TPARNSQRSRWA*RSHHTHFAFDT
Trigger: GGTGTCAAAGGCGAAATGGGTATGATGGGACCTCCAGGCCCACCTGGACCTTTGGGAATTCCTGGCAGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 72 bp AGTCTCTCCCACCGACCCTTTGATACCTGGGTTTCCTaGATATCCAGGCAGACCAGGTTCACCCTTTGGGCC +
Preference number: 6 (lower is better)
Translates to: SLSHRPFDTWVS*ISRQTRFTLWA
Trigger: GGCCCAAAGGGTGAACCTGGTCTGCCTGGATATCCAGGAAACCCAGGTATCAAAGGGTCGGTGGGAGAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 72 bp GTTCCCCATCAGGGCCAGTGGAGCCTGGTACTCCAATaGGTCCTTTCATTCCTGGGAATCCTGGAACACCAG +
Preference number: 6 (lower is better)
Translates to: VPHQGQWSLVLQ*VLSFLGILEHQ
Trigger: CTGGTGTTCCAGGATTCCCAGGAATGAAAGGACCCATTGGAGTACCAGGCTCCACTGGCCCTGATGGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS GCA 72 bp GTCCTGGAGGACCTTGTAAACCAGGAAAGCCCGGACTaGCTGGAAATCCACGTTCTCCCTTGGTTCCATTGC +
Preference number: 6 (lower is better)
Translates to: VLEDLVNQESPD*LEIHVLPWFHC
Trigger: GCAATGGAACCAAGGGAGAACGTGGATTTCCAGGCAGTCCGGGCTTTCCTGGTTTACAAGGTCCTCCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp CTGAAGACCAATTCCTGGCAGCCCTGGAGGCCCTACTaGGCCAGGTTGTCCATTTGGTCCAACATCACCTTT +
Preference number: 6 (lower is better)
Translates to: LKTNSWQPWRPY*ARLSIWSNITF
Trigger: AAAGGTGATGTTGGACCAAATGGACAACCTGGCCCAGTAGGGCCTCCAGGGCTGCCAGGAATTGGTCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp AGTAAGACCTGGTTCCCCATCAGGGCCAGTGGAGCCTaGTACTCCAATGGGTCCTTTCATTCCTGGGAATCC +
Preference number: 6 (lower is better)
Translates to: SKTWFPIRASGA*YSNGSFHSWES
Trigger: GGATTCCCAGGAATGAAAGGACCCATTGGAGTACCAGGCTCCACTGGCCCTGATGGGGAACCAGGTCTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp AGGAAATCCAGGAGGTCCAGGGGGCCCATCTACACCTaGAGGGCCAGGAAAACCCATGTCACCAATGTTTCC +
Preference number: 6 (lower is better)
Translates to: RKSRRSRGPIYT*RARKTHVTNVS
Trigger: GGAAACATTGGTGACATGGGTTTTCCTGGCCCTCAAGGTGTAGATGGGCCCCCTGGACCTCCTGGATTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 90 bp GGTATGCCTGGCAATCCTTTCGGACCAGTTATCCCAGCTTGTCCTTaGTCCCCCTTCTCTCCAGGGATTCCAAGAGATCCTGGAGGACCT +
Preference number: 6 (lower is better)
Translates to: GMPGNPFGPVIPACP*SPFSPGIPRDPGGP
Trigger: AGGTCCTCCAGGATCTCTTGGAATCCCTGGAGAGAAGGGGGACAAAGGACAAGCTGGGATAACTGGTCCGAAAGGATTGCCAGGCATACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp TGGCCTGGATCTCCTTTAGGACCTGGTAATCCCGGCTaGCCTGGATTTCCTGCCACACCTTGTATGCCTTTT +
Preference number: 6 (lower is better)
Translates to: WPGSPLGPGNPG*PGFPATPCMPF
Trigger: AAAAGGCATACAAGGTGTGGCAGGAAATCCAGGCCAGCCGGGATTACCAGGTCCTAAAGGAGATCCAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp AGCTGGCGCCTCACACACTGCACATCGACTAATGAATaGCTGGATGCTCTGTCCCTTCAGGGGTTCCATGTT +
Preference number: 6 (lower is better)
Translates to: SWRLTHCTSTNE*LDALSLQGFHV
Trigger: AACATGGAACCCCTGAAGGGACAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTGTGTGAGGCGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp GGAAGCCCTGGAGCTCCAGGGAAACCCAACTCTCCTTaGTCACCTTTCATTCCTGGAAGAGTGAGGACATCC +
Preference number: 6 (lower is better)
Translates to: GSPGAPGKPNSP*SPFIPGRVRTS
Trigger: GGATGTCCTCACTCTTCCAGGAATGAAAGGTGACAAAGGAGAGTTGGGTTTCCCTGGAGCTCCAGGGCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CAA 72 bp GGTAATCCAGGAAGACCAGTCTCTCCCACCGACCCTTaGATACCTGGGTTTCCTGGATATCCAGGCAGACCA +
Preference number: 6 (lower is better)
Translates to: GNPGRPVSPTDP*IPGFPGYPGRP
Trigger: TGGTCTGCCTGGATATCCAGGAAACCCAGGTATCAAAGGGTCGGTGGGAGAGACTGGTCTTCCTGGATTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 72 bp GGTGGGCCTTGTATTCCAGGAGGACCTGGGTATCCTTaGTTACCCTTTGGTCCTGGCAGTGGTGACATGATT +
Preference number: 6 (lower is better)
Translates to: GGPCIPGGPGYP*LPFGPGSGDMI
Trigger: AATCATGTCACCACTGCCAGGACCAAAGGGTAATCAAGGATACCCAGGTCCTCCTGGAATACAAGGCCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp GTATCACCTTTGTCACCTTTTACTCCTCGCTCTCCTTaGAGTCCTTTATCACCTGGAGGTCCTGGAGGCCCA +
Preference number: 6 (lower is better)
Translates to: VSPLSPFTPRSP*SPLSPGGPGGP
Trigger: TGGGCCTCCAGGACCTCCAGGTGATAAAGGACTCCAAGGAGAGCGAGGAGTAAAAGGTGACAAAGGTGATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CCA 72 bp GGCGCCTCACACACTGCACATCGACTAATGAATGGCTaGATGCTCTGTCCCTTCAGGGGTTCCATGTTCATT +
Preference number: 6 (lower is better)
Translates to: GASHTAHRLMNG*MLCPFRGSMFI
Trigger: AATGAACATGGAACCCCTGAAGGGACAGAGCATCCAGCCATTCATTAGTCGATGTGCAGTGTGTGAGGCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp TATGCCTGGCAATCCTTTCGGACCAGTTATCCCAGCTaGTCCTTTGTCCCCCTTCTCTCCAGGGATTCCAAG +
Preference number: 6 (lower is better)
Translates to: YAWQSFRTSYPS*SFVPLLSRDSK
Trigger: CTTGGAATCCCTGGAGAGAAGGGGGACAAAGGACAAGCTGGGATAACTGGTCCGAAAGGATTGCCAGGCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS TCA 72 bp GTTGTCCAGGAATCCCTGGAGGTCCAGGATCTCCTTTaGTTACAATACTCTGTCCTGAAGGACCAGGCAACC +
Preference number: 6 (lower is better)
Translates to: VVQESLEVQDLL*LQYSVLKDQAT
Trigger: GGTTGCCTGGTCCTTCAGGACAGAGTATTGTAATCAAAGGAGATCCTGGACCTCCAGGGATTCCTGGACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp AACTGTTCCCCGTGGGCATTGTGGTGCTTCTGTTGTTaGACTGTGACGTGTGATGAGGAATCCATGGGCAAC +
Preference number: 6 (lower is better)
Translates to: NCSPWALWCFCC*TVTCDEESMGN
Trigger: GTTGCCCATGGATTCCTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 72 bp ATCCTTGATTACCCTTTGGTCCTGGCAGTGGTGACATaGTTATACTGCCTGGTTCCCCCTTCATACCTGGGA +
Preference number: 6 (lower is better)
Translates to: ILDYPLVLAVVT*LYCLVPPSYLG
Trigger: TCCCAGGTATGAAGGGGGAACCAGGCAGTATAATCATGTCACCACTGCCAGGACCAAAGGGTAATCAAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS TCA 72 bp TCTGAAATTCTATGTCAATTGGTCTTTTCTGTTCGCTaGTCTGCCCAGGTGGACCAGGTGGGCCCTGAAGAC +
Preference number: 6 (lower is better)
Translates to: SEILCQLVFSVR*SAQVDQVGPED
Trigger: GTCTTCAGGGCCCACCTGGTCCACCTGGGCAGATCAGCGAACAGAAAAGACCAATTGACATAGAATTTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CAA 72 bp CTCCCTTTTCTCCTTTTATACCACTGCAGTCACATTTaGATCCAGAAGAACACCCATGGCAGGCCGCAGCCT +
Preference number: 6 (lower is better)
Translates to: LPFLLLYHCSHI*IQKNTHGRPQP
Trigger: AGGCTGCGGCCTGCCATGGGTGTTCTTCTGGATCAAAATGTGACTGCAGTGGTATAAAAGGAGAAAAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
CDS CAA 90 bp ATAGATATGAACTGTTCCCCGTGGGCATTGTGGTGCTTCTGTTGTTaGACTGTGACGTGTGATGAGGAATCCATGGGCAACAGAGGTGGT +
Preference number: 6 (lower is better)
Translates to: IDMNCSPWALWCFCC*TVTCDEESMGNRGG
Trigger: ACCACCTCTGTTGCCCATGGATTCCTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 72 bp GCCTTCATAGATATGAACTGTTCCCCGTGGGCATTGTaGTGCTTCTGTTGTTTGACTGTGACGTGTGATGAG +
Preference number: 6 (lower is better)
Translates to: AFIDMNCSPWAL*CFCCLTVTCDE
Trigger: CTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 90 bp CAGGAGAGAAAAGCCTTCATAGATATGAACTGTTCCCCGTGGGCATaGTGGTGCTTCTGTTGTTTGACTGTGACGTGTGATGAGGAATCC +
Preference number: 6 (lower is better)
Translates to: QERKAFIDMNCSPWA*WCFCCLTVTCDEES
Trigger: GGATTCCTCATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGCTTTTCTCTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS TCA 72 bp CGCGTCCTCAAGTCTCCTGCTTTCAGGGTTTCTGACTaGGGTTTGTTGAACATGTCTGACATATCAACAGTG +
Preference number: 6 (lower is better)
Translates to: RVLKSPAFRVSD*GLLNMSDISTV
Trigger: CACTGTTGATATGTCAGACATGTTCAACAAACCTCAGTCAGAAACCCTGAAAGCAGGAGACTTGAGGACGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CCA 72 bp GAGAGAAAAGCCTTCATAGATATGAACTGTTCCCCGTaGGCATTGTGGTGCTTCTGTTGTTTGACTGTGACG +
Preference number: 6 (lower is better)
Translates to: ERKAFIDMNCSP*ALWCFCCLTVT
Trigger: CGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGCTTTTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2
CDS CAA 72 bp AAAGCCTTCATAGATATGAACTGTTCCCCGTGGGCATaGTGGTGCTTCTGTTGTTTGACTGTGACGTGTGAT +
Preference number: 6 (lower is better)
Translates to: KAFIDMNCSPWA*WCFCCLTVTCD
Trigger: ATCACACGTCACAGTCAAACAACAGAAGCACCACAATGCCCACGGGGAACAGTTCATATCTATGAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112930.8
ENSMUST00000112931.8
ENSMUST00000130732.2