RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL4A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031502

Ensembl transcript IDs: ENSMUST00000033898.10, ENSMUST00000208095.2, ENSMUST00000209598.2, ENSMUST00000209661.2, ENSMUST00000209735.2

Found 582 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGCCTGGGTCACCTTTAGGCCCTGGCTGTCCGGGATGCCCTGCCTaGCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGG +
Preference number: 1 (lower is better)
Translates to: RPGSPLGPGCPGCPA*PSFPGTPGVPGSPR
Trigger: CCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAGCCAGGGCCTAAAGGTGACCCAGGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR GCA 90 bp GTCCCACTAAGGCCTGGGTCACCTTTAGGCCCTGGCTGTCCGGGATaGCCTGCCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGG +
Preference number: 1 (lower is better)
Translates to: VPLRPGSPLGPGCPG*PACPSFPGTPGVPG
Trigger: CCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAGCCAGGGCCTAAAGGTGACCCAGGCCTTAGTGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR CCA 90 bp CCTGATGTGGAAACACTGGACAGTGGGTTGGACAGCACTCACATCTaGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCC +
Preference number: 1 (lower is better)
Translates to: PDVETLDSGLDSTHI*GDRMKRAVGCVESA
Trigger: GGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCAGATGTGAGTGCTGTCCAACCCACTGTCCAGTGTTTCCACATCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 90 bp GGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTaGTCAGGTGTGAAATGCCTGCCAGGATGCAGGATGAAGGAGGCT +
Preference number: 1 (lower is better)
Translates to: GAVSQLERSWEVACV*SGVKCLPGCRMKEA
Trigger: AGCCTCCTTCATCCTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 90 bp TTAGTGAAATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTaGGACCTGTCCACTCCCTGCAGGGGCTGTGTCACAGCTCGAGAG +
Preference number: 1 (lower is better)
Translates to: LVKCHFKHSGPSLPS*DLSTPCRGCVTARE
Trigger: CTCTCGAGCTGTGACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACATTTCACTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR TCA 90 bp AGCACCAGCGCTGGTGTGCATCACGAAGGAATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCACTGCGGAATCTGAATGGTCTGACT +
Preference number: 1 (lower is better)
Translates to: STSAGVHHEGIADPQ*GPTVRALRNLNGLT
Trigger: AGTCAGACCATTCAGATTCCGCAGTGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTATTCCTTCGTGATGCACACCAGCGCTGGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR GCA 90 bp TGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATaGAGGATGAAGGAGGCTAACAAAGGCCTTGGCTGTCGTACGGGA +
Preference number: 1 (lower is better)
Translates to: WEVACVCSGVKCLPG*RMKEANKGLGCRTG
Trigger: TCCCGTACGACAGCCAAGGCCTTTGTTAGCCTCCTTCATCCTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR TCA 90 bp GAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGTaGAAGGATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCT +
Preference number: 1 (lower is better)
Translates to: ESWCFTFSGLMLVTL*KDSTVSPETKTKCA
Trigger: AGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATCCTTTCACAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 90 bp AAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTaGCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGCA +
Preference number: 1 (lower is better)
Translates to: KCNSSFIGSGAPFGM*HYGKLSAACPSPSA
Trigger: TGCTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 90 bp GATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTaGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCC +
Preference number: 1 (lower is better)
Translates to: DCKMQFIFYWIRSAI*YVPLWKALRCLSFS
Trigger: GGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 90 bp CCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTTTATTaGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTC +
Preference number: 1 (lower is better)
Translates to: PDISALDCKMQFIFY*IRSAIWYVPLWKAL
Trigger: GAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCTCTGGGGTGACAGGATaGAGCGGGCTGTGGGCTGTG +
Preference number: 2 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPSGVTG*SGLWAV
Trigger: CACAGCCCACAGCCCGCTTCATCCTGTCACCCCAGA...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CAA 90 bp GCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCTAGCACCTTaGGGTTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGA +
Preference number: 2 (lower is better)
Translates to: AGCGLCGERLTPLAP*GFLWSSRPRHQCTG
Trigger: TCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp AATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCGGGCTGTGGGCTGTGTaGAGAGCGCCTCACGCCCCT +
Preference number: 2 (lower is better)
Translates to: NVTSSIVVRVCPPATCPLGLWAV*RAPHAP
Trigger: AGGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCC...GAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGTCTGGGGTGACAGGATaGAGCGGGCTGTGGGCTGTG +
Preference number: 2 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQSGVTG*SGLWAV
Trigger: CACAGCCCACAGCCCGCTTCATCCTGTCACCCCAGA...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCTGGAAAGCTCTCCGCTaGCTGTCCTTCTCCTTCAGC +
Preference number: 2 (lower is better)
Translates to: AREELGSCLCVLRCEMPAWKALR*LSFSFS
Trigger: GCTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCA...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACTGGAAAGCTCTCCGCTaGCTGTCCTTCTCCTTCAGC +
Preference number: 2 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHWKALR*LSFSFS
Trigger: GCTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCA...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCTGCCTTCAAGGTGGATaGCGTGGGCTTCTTGAACAT +
Preference number: 2 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPCLQGG*RGLLEH
Trigger: ATGTTCAAGAAGCCCACGCCATCCACCTTGAAGGCA...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACAGACAGCACTCACATCTaGGGTGACAGGATGAAGCGG +
Preference number: 2 (lower is better)
Translates to: TPRRAEARSARHRAHYQTDSTHI*GDRMKR
Trigger: CCGCTTCATCCTGTCACCCCAGATGTGAGTGCTGTC...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGAATGGGTTTGGCTTTaGCTATCTATACACCTCCTC +
Preference number: 2 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCAEWVWL*LSIHLL
Trigger: GAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGAGACGAAAACCAAGTaGGCTTTATTTAACAACAGG +
Preference number: 2 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCAETKTK*ALFNNR
Trigger: CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCGTTCCATGTAGAAAGTaGAAGAAACCAGTTCCCTTG +
Preference number: 2 (lower is better)
Translates to: AREELGSCLCVLRCEMPAVPCRK*KKPVPL
Trigger: CAAGGGAACTGGTTTCTTCCACTTTCTACATGGAAC...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGGCCCCTCGAGGGACCTaGTGTGGAAACACTGGACAG +
Preference number: 2 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTAPRGT*CGNTGQ
Trigger: CTGTCCAGTGTTTCCACATCAGGTCCCTCGAGGGGC...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGGAGTTTGAGGAAAGCTaGTGTTTCACATTCAGTGGC +
Preference number: 2 (lower is better)
Translates to: VTAREELGSCLCVLRCEMEFEES*CFTFSG
Trigger: GCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACAATCAGGAGCGCCATTTaGTATGTGCCATTATGGAAA +
Preference number: 2 (lower is better)
Translates to: TPRRAEARSARHRAHYQTIRSAI*YVPLWK
Trigger: TTTCCATAATGGCACATACCAAATGGCGCTCCTGAT...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCCCCTCGAGGGACCTaGTGTGGAAACACTGGACAG +
Preference number: 2 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKAPRGT*CGNTGQ
Trigger: CTGTCCAGTGTTTCCACATCAGGTCCCTCGAGGGGC...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCA +
Preference number: 2 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSIADPQ*GPTVRA
Trigger: TGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTAT...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACATTTCATAGTGGACAGTaGGGTACACAGGATATAATT +
Preference number: 2 (lower is better)
Translates to: TPRRAEARSARHRAHYQTFHSGQ*GTQDII
Trigger: AATTATATCCTGTGTACCTCACTGTCCACTATGAAA...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCTTCCACAAAAGCAGCTaGATAGTACCACACAGGGCA +
Preference number: 2 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTFHKSS*IVPHRA
Trigger: TGCCCTGTGTGGTACTATGCAGCTGCTTTTGTGGAA...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACACTGCGGAATCTGAATaGTCTGACTGTGTACCGCCA +
Preference number: 2 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDTAESE*SDCVPP
Trigger: TGGCGGTACACAGTCAGACCATTCAGATTCCGCAGT...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGTTTCATAGTGGACAGTaGGGTACACAGGATATAATT +
Preference number: 2 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMFHSGQ*GTQDII
Trigger: AATTATATCCTGTGTACCTCACTGTCCACTATGAAA...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp GCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTAATTCTAGGGTTCATTaGTGTTACAAATACAATGGG +
Preference number: 2 (lower is better)
Translates to: ARSARHRAHYQTPCLGMGNSRVH*CYKYNG
Trigger: CCCATTGTATTTGTAACAGCAATGAACCCTAGAATT...ACCCATTCCTAAACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTATCAGGAGCGCCATTTaGTATGTGCCATTATGGAAA +
Preference number: 2 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLIRSAI*YVPLWK
Trigger: TTTCCATAATGGCACATACCAAATGGCGCTCCTGAT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CAA 90 bp CCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTTTATaGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCT +
Preference number: 2 (lower is better)
Translates to: PRHQCTGLQNAIHLL*DQERHLVCAIMESS
Trigger: AGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GGAGGGTGGGTACTTTTAGTGAAATGTCACTTCAAGCATAGTGGTCCGAGTCTGTTTCCATCTAACCTTTaGACCATCTTTATTCCACAG +
Preference number: 2 (lower is better)
Translates to: GGWVLLVKCHFKHSGPSLFPSNL*TIFIPQ
Trigger: CTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAAA...CAGACTCGGACCACTATGCTTGAAGTGACATTTCACTAAAAGTACCCACCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACGAGTTTGAGGAAAGCTaGTGTTTCACATTCAGTGGC +
Preference number: 2 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYEFEES*CFTFSG
Trigger: GCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGCAGACATCAGTGCACTaGATTGCAAAATGCAATTCA +
Preference number: 2 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGQTSVH*IAKCNS
Trigger: TGAATTGCATTTTGCAATCCAGTGCACTGATGTCTG...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCATCTATACACCTCCTCTaGTTTAGGAGTGAGTTTGAG +
Preference number: 2 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKASIHLL*FRSEFE
Trigger: CTCAAACTCACTCCTAAACCAGAGGAGGTGTATAGA...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR TCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGTTTCATAGTGGACAGTaGGGTACACAGGATATAATT +
Preference number: 2 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGFHSGQ*GTQDII
Trigger: AATTATATCCTGTGTACCTCACTGTCCACTATGAAA...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACAAAGCTGTAAGCATTTaGGTAGTAATTGCACGTTCC +
Preference number: 2 (lower is better)
Translates to: RRKPSALYLTTGSTLELDKAVSI*VVIARS
Trigger: GGAACGTGCAATTACTACGCAAATGCTTACAGCTTT...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATATCAGTGCACTGGATTaGAAAATGCAATTCATCTTT +
Preference number: 2 (lower is better)
Translates to: EAGCVSYANPYKALYGFHISALD*KMQFIF
Trigger: AAAGATGAATTGCATTTTGCAATCCAGTGCACTGAT...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR GCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTAATTCTAGGGTTCATTaGTGTTACAAATACAATGGG +
Preference number: 2 (lower is better)
Translates to: YGKSVIQSVVSVANPENTNSRVH*CYKYNG
Trigger: CCCATTGTATTTGTAACAGCAATGAACCCTAGAATT...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 72 bp AGGCCTGGGTCACCTTTAGGCCCTGGCTGTCCGGGATaGCCTGCCTGCCCATCCTTCCCAGGTACTCCTGGT +
Preference number: 3 (lower is better)
Translates to: RPGSPLGPGCPG*PACPSFPGTPG
Trigger: ACCAGGAGTACCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAGCCAGGGCCTAAAGGTGACCCAGGCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR CCA 72 bp AGGGAGTCCAGGGGATCCTGGTGTCCCACTAAGGCCTaGGTCACCTTTAGGCCCTGGCTGTCCGGGATGCCC +
Preference number: 3 (lower is better)
Translates to: RESRGSWCPTKA*VTFRPWLSGMP
Trigger: GGGCATCCCGGACAGCCAGGGCCTAAAGGTGACCCAGGCCTTAGTGGGACACCAGGATCCCCTGGACTCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR GCA 72 bp TCACCTTTAGGCCCTGGCTGTCCGGGATGCCCTGCCTaGCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGG +
Preference number: 3 (lower is better)
Translates to: SPLGPGCPGCPA*PSFPGTPGVPG
Trigger: CCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAGCCAGGGCCTAAAGGTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR GCA 72 bp TGGGTCACCTTTAGGCCCTGGCTGTCCGGGATGCCCTaGCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCC +
Preference number: 3 (lower is better)
Translates to: WVTFRPWLSGMP*LPILPRYSWCS
Trigger: GGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAGCCAGGGCCTAAAGGTGACCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
3UTR TCA 72 bp ACTGGACAGTGGGTTGGACAGCACTCACATCTGGGGTaGCAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAG +
Preference number: 3 (lower is better)
Translates to: TGQWVGQHSHLG*QDEAGCGLCGE
Trigger: CTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCAGATGTGAGTGCTGTCCAACCCACTGTCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 72 bp TGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTaGGACCTGTCCACTCCCTGCAGGGGCTGTGTCACA +
Preference number: 3 (lower is better)
Translates to: CHFKHSGPSLPS*DLSTPCRGCVT
Trigger: TGTGACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 72 bp CACTTGGCAGCGGCTGACGTGTGTTCGCAGCTCCCCTaGCTTCAAGGTGGATGGCGTGGGCTTCTTGAACAT +
Preference number: 3 (lower is better)
Translates to: HLAAADVCSQLP*LQGGWRGLLEH
Trigger: ATGTTCAAGAAGCCCACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACACACGTCAGCCGCTGCCAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR CCA 72 bp ATGCGAGGGCTTGGCCGGAACCTTCAGCACCAGCGCTaGTGTGCATCACGAAGGAATAGCCGATCCACAGTG +
Preference number: 3 (lower is better)
Translates to: MRGLGRNLQHQR*CASRRNSRSTV
Trigger: CACTGTGGATCGGCTATTCCTTCGTGATGCACACCAGCGCTGGTGCTGAAGGTTCCGGCCAAGCCCTCGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR CCA 72 bp CTGCATAGCCCCTCGAGGGACCTGATGTGGAAACACTaGACAGTGGGTTGGACAGCACTCACATCTGGGGTG +
Preference number: 3 (lower is better)
Translates to: LHSPSRDLMWKH*TVGWTALTSGV
Trigger: CACCCCAGATGTGAGTGCTGTCCAACCCACTGTCCAGTGTTTCCACATCAGGTCCCTCGAGGGGCTATGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGGCATAAGTTTGTGTTaGGGGCTGAAACGATGGAGT +
Preference number: 3 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPGISLC*GLKRWS
Trigger: ACTCCATCGTTTCAGCCCCAAACACAAACTTATGCC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR GCA 72 bp GCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATaGAGGATGAAGGAGGCTAACAAAGGCCTTGGCTGT +
Preference number: 3 (lower is better)
Translates to: ACVCSGVKCLPG*RMKEANKGLGC
Trigger: ACAGCCAAGGCCTTTGTTAGCCTCCTTCATCCTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 72 bp GACTGTTCTCTGCATAGCCCCTCGAGGGACCTGATGTaGAAACACTGGACAGTGGGTTGGACAGCACTCACA +
Preference number: 3 (lower is better)
Translates to: DCSLHSPSRDLM*KHWTVGWTALT
Trigger: TGTGAGTGCTGTCCAACCCACTGTCCAGTGTTTCCACATCAGGTCCCTCGAGGGGCTATGCAGAGAACAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 72 bp GACGTGTGTTCGCAGCTCCCCTGCCTTCAAGGTGGATaGCGTGGGCTTCTTGAACATCTCGCTTCTCTCTAT +
Preference number: 3 (lower is better)
Translates to: DVCSQLPCLQGG*RGLLEHLASLY
Trigger: ATAGAGAGAAGCGAGATGTTCAAGAAGCCCACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACACACGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR TCA 72 bp GCTGGTGTGCATCACGAAGGAATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCACTGCGGAATCTGAAT +
Preference number: 3 (lower is better)
Translates to: AGVHHEGIADPQ*GPTVRALRNLN
Trigger: ATTCAGATTCCGCAGTGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTATTCCTTCGTGATGCACACCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACGGCATAAGTTTGTGTTaGGGGCTGAAACGATGGAGT +
Preference number: 3 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHGISLC*GLKRWS
Trigger: ACTCCATCGTTTCAGCCCCAAACACAAACTTATGCC...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 72 bp TATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATaGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGC +
Preference number: 3 (lower is better)
Translates to: YWIRSAIWYVPL*KALRCLSFSFS
Trigger: GCTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGGATGGCGTGGGCTTCTaGAACATCTCGCTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGDGVGF*NISLLS
Trigger: AGAGAGAAGCGAGATGTTCAAGAAGCCCACGCCATC...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR GCA 72 bp TCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTaGCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCT +
Preference number: 3 (lower is better)
Translates to: SSFIGSGAPFGM*HYGKLSAACPS
Trigger: AGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGAGTCTGTGGTTAGTGTaGCAAACCCTGAAAATACTC +
Preference number: 3 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLSLWLV*QTLKIL
Trigger: GAGTATTTTCAGGGTTTGCAACACTAACCACAGACT...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 72 bp ATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTaGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: MQFIFYWIRSAI*YVPLWKALRCL
Trigger: CAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CCA 72 bp GAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTaGTTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTC +
Preference number: 3 (lower is better)
Translates to: EWVWLWLSIHLL*FRSEFEESWCF
Trigger: GAAACACCAGCTTTCCTCAAACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR TCA 72 bp TGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGTaGAAGGATAGTACAGTTTCTCCAGAGACGAAAACC +
Preference number: 3 (lower is better)
Translates to: CFTFSGLMLVTL*KDSTVSPETKT
Trigger: GGTTTTCGTCTCTGGAGAAACTGTACTATCCTTTCACAGGGTTACCAACATCAGGCCACTGAATGTGAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACGGTTTAGGAGTGAGTTaGAGGAAAGCTGGTGTTTCA +
Preference number: 3 (lower is better)
Translates to: RRKPSALYLTTGSTLELDGLGVS*RKAGVS
Trigger: TGAAACACCAGCTTTCCTCAAACTCACTCCTAAACC...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp GATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGGGTTTAGGAGTGAGTTaGAGGAAAGCTGGTGTTTCA +
Preference number: 3 (lower is better)
Translates to: DSTVSPETKTKCALFNNRGLGVS*RKAGVS
Trigger: TGAAACACCAGCTTTCCTCAAACTCACTCCTAAACC...CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR-3UTR CAA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAAGCTGTAAGCATTaGCGTAGTAATTGCACGTTC +
Preference number: 3 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTKSCKH*RSNCTF
Trigger: GAACGTGCAATTACTACGCAAATGCTTACAGCTTTT...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
3UTR TCA 72 bp CCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTaGGGTACACAGGATATAATTCTAGGGTTCATTGCT +
Preference number: 3 (lower is better)
Translates to: PYKALYGFHSGQ*GTQDIILGFIA
Trigger: AGCAATGAACCCTAGAATTATATCCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCCGGCTGCGCTCCTCGTaGAGCAGAAGGGCGGCGAAG +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVRLRSS*SRRAAK
Trigger: CTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCG...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCACTCCAGGTGTCCCCTaGTGTCCAGGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: WGDRMKRAVGCVESASRPTPGVP*CPGRPG
Trigger: CCCTGGCCTTCCTGGACAGCAGGGGACACCTGGAGT...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCCCGGGATTCCATCGCTaGCCGGCTCTCCCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVPGFHR*PALPSG
Trigger: GCCAGAAGGGAGAGCCGGGCAGCGATGGAATCCCGG...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCGTCCTCGGTCTCCTTTaGGCCCCTCCACAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: WGDRMKRAVGCVESASRPVLGLL*APPQGD
Trigger: GTCACCCTGTGGAGGGGCCCAAAGGAGACCGAGGAC...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTTCACCCTTCTCTCCCTaGGGGCCCTGCCGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCASPFSP*GPCRPG
Trigger: CCCAGGCCGGCAGGGCCCGCAGGGAGAGAAGGGTGA...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTGCCGTGGCACTCGATGAATGGGGCGCTTCTAAACTCTTCCAGACAGGACCCGCGGGCCCTGCCGGCCTaGGAGACCTGGGTACCCGGA +
Preference number: 4 (lower is better)
Translates to: LPWHSMNGALLNSSRQDPRALPA*ETWVPG
Trigger: TCCGGGTACCCAGGTCTCCCAGGCCGGCAGGGCCCG...CGGGTCCTGTCTGGAAGAGTTTAGAAGCGCCCCATTCATCGAGTGCCACGGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGTCCCAGGAGGGCCCTaGTCCCCGGGTGGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCAVPGGP*SPGGPG
Trigger: ACCTGGACCACCCGGGGACCAGGGCCCTCCTGGGAC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGACCCTGGTGGTCCTTaGCCTCCGGGAGGGCCCATA +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPDPGGP*PPGGPI
Trigger: TATGGGCCCTCCCGGAGGGCAAGGACCACCAGGGTC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCCTGGGGTTCCGGCACTaGCTTTCTCTCCCTTCTCAC +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVLGFRH*LSLPSH
Trigger: GTGAGAAGGGAGAGAAAGGCAGTGCCGGAACCCCAG...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCGAGCCCGGAAGGCCATaGTCCCCTTTTTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVEPGRP*SPFSPG
Trigger: ACCTGGAGAAAAAGGGGACCATGGCCTTCCGGGCTC...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTGCCGTGGCACTCGATGAATGGGGCGCTTCTAAACTCTTCCAGACAGGACCCGCTGTCCGGGATGCCCTaGCTGCCCATCCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: LPWHSMNGALLNSSRQDPLSGMP*LPILPR
Trigger: CCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAG...CGGGTCCTGTCTGGAAGAGTTTAGAAGCGCCCCATTCATCGAGTGCCACGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGTCACCTTGTGGCCCTaGGAAGCCAGGGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPVTLWP*EARGSW
Trigger: CCAGGATCCCCTGGCTTCCCAGGGCCACAAGGTGAC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGATCCTGGTGTCCCACTAAGGCCTGGGTCACCTTTAGGCCCTGGCTGTCCGGGGAGCCCGGAAGGCCATaGTCCCCTTTTTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: GSWCPTKAWVTFRPWLSGEPGRP*SPFSPG
Trigger: ACCTGGAGAAAAAGGGGACCATGGCCTTCCGGGCTC...CCCGGACAGCCAGGGCCTAAAGGTGACCCAGGCCTTAGTGGGACACCAGGATCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR TCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGGCCTGACTGTCCTGTaGGGCCAGGAAGTCCTTGAG +
Preference number: 4 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCAGLTVL*GQEVLE
Trigger: CTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCGCCGGGTCCCCCGATaGTACCCTTCTCTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHRRVPR*YPSLQV
Trigger: CACCTGGAGAGAAGGGTAGCATCGGGGGACCCGGCG...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGGACCCTGGTGGTCCTTaGCCTCCGGGAGGGCCCATA +
Preference number: 4 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQDPGGP*PPGGPI
Trigger: TATGGGCCCTCCCGGAGGGCAAGGACCACCAGGGTC...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCTCTCCTTTCACTCCCTaGAGACCAGGAAGCCCTTTC +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVSPFTP*RPGSPF
Trigger: GAAAGGGCTTCCTGGTCTGCAGGGAGTGAAAGGAGA...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGAGCCGTACCCAAGTCCTaGCCGTGGGCACGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: ERSWEVACVCSGVKCLPGAVPKS*PWARSL
Trigger: CAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGC...TCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCCTCACCCTTTGGGCCTaGAAGACCTGGGGACCCAGG +
Preference number: 4 (lower is better)
Translates to: AREELGSCLCVLRCEMPALTLWA*KTWGPR
Trigger: CCTGGGTCCCCAGGTCTTCCAGGCCCAAAGGGTGAG...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCAGGAAATCCAATTCCTaGCTGGCCCACAGCACCTTT +
Preference number: 4 (lower is better)
Translates to: WGDRMKRAVGCVESASRPRKSNS*LAHSTF
Trigger: AAAGGTGCTGTGGGCCAGCCAGGAATTGGATTTCCT...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGAGCCAGGGTCGCCCCTaGGTCCTGAGGAGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: VTAREELGSCLCVLRCEMSQGRP*VLRSPE
Trigger: TTCCGGGCTCCTCAGGACCCAGGGGCGACCCTGGCT...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTATCAAGCCAGGGTCGCCCCTaGGTCCTGAGGAGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: PSFPGTPGVPGSPREPLSSQGRP*VLRSPE
Trigger: TTCCGGGCTCCTCAGGACCCAGGGGCGACCCTGGCT...TGATAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCTGTCCACATGCTCCATaGATCCTGGCATGCCAGGAA +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVCPHAP*ILACQE
Trigger: TTCCTGGCATGCCAGGATCCATGGAGCATGTGGACA...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGGGCCGGGTACACCTTaGTCTCCCTGGTCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCAGPGTP*SPWSPF
Trigger: GAAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCCCAAGTCCTGCCCGTaGGCACGCTCGTTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHPKSCP*ARSLPW
Trigger: CCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGG...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCTCTCGCTTCTCTCTATaGTGGCGAGCCAAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: WGDRMKRAVGCVESASRPSRFSL*WRAKSC
Trigger: ACAGCTTTTGGCTCGCCACCATAGAGAGAAGCGAGA...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR TCA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTGGACCTGCTGGGCCTTaGACTCCAGGAGGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPGPAGP*TPGGPG
Trigger: CCCAGGGCCTCCTGGAGTTCAAGGCCCAGCAGGTCC...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACGACCCCTGGTGGACCTaGTGGGCCTTGAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHDPWWT*WALNSR
Trigger: CCTGGAGTTCAAGGCCCAGCAGGTCCACCAGGGGTC...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTAACTCCAGGTGTCCCCTaGTGTCCAGGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CPSFPGTPGVPGSPREPLTPGVP*CPGRPG
Trigger: CCCTGGCCTTCCTGGACAGCAGGGGACACCTGGAGT...TAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR GCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCCAGGTAACCCTGGGGTaGCTGCTGGTCCTGGCGAGC +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPQVTLG*LLVLAS
Trigger: GCTCGCCAGGACCAGCAGGCACCCCAGGGTTACCTG...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTCCATGGATCCTGGCATaGCAGGAAGCCCAACGTCAC +
Preference number: 4 (lower is better)
Translates to: PAHPSQVLLVFQGLLGNLPWILA*QEAQRH
Trigger: GTGACGTTGGGCTTCCTGGCATGCCAGGATCCATGG...AAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR GCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCCCATGGATCCTGGCATaGCAGGAAGCCCAACGTCAC +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPPWILA*QEAQRH
Trigger: GTGACGTTGGGCTTCCTGGCATGCCAGGATCCATGG...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CCTGCCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACTCCCCATGTCCACATaGTCCATGGATCCTGGCATG +
Preference number: 4 (lower is better)
Translates to: PACPSFPGTPGVPGSPRELPMST*SMDPGM
Trigger: CATGCCAGGATCCATGGAGCATGTGGACATGGGGAG...TTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGACGGCTGCGCTCCTCGTaGAGCAGAAGGGCGGCGAAG +
Preference number: 4 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRRLRSS*SRRAAK
Trigger: CTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCG...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCTTCTCCCCTTTCACCTaGGAAGCCTGGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPFSPFT*EAWSTS
Trigger: GCTGGTGCTCCAGGCTTCCCAGGTGAAAGGGGAGAA...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGTCCCGGAGGCCCCTGTaGCCCTGGAGGGCCACGAAG +
Preference number: 4 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRSRRPL*PWRATK
Trigger: CTTCGTGGCCCTCCAGGGCCACAGGGGCCTCCGGGA...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCGGGTGGCCCTATTCCTaGGACCCCTGGTGGACCTGC +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPGWPYS*DPWWTC
Trigger: GCAGGTCCACCAGGGGTCCCAGGAATAGGGCCACCC...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTATCTGGTCCTGGCGAGCCTaGTTGTCCCGGGGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: PILPRYSWCSRVSSGTFIWSWRA*LSRGSH
Trigger: ATGGGAACCCCGGGACAACCAGGCTCGCCAGGACCA...GATAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACAGTCTCCCTTAGGGCCTaGAACCCCCGGAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: TPRRAEARSARHRAHYQTVSLRA*NPRSSW
Trigger: CCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGAC...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGGACCTGGTGGTCCCTaGAGTCCTTTAAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPGPGGP*SPLRPG
Trigger: CCCTGGTCTTAAAGGACTCCAGGGACCACCAGGTCC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
3UTR CAA 72 bp GGGCTGTGTGGAGAGCGCCTCACGCCCCTAGCACCTTaGGGTTTCTTATGGAGTTCTCGCCCCAGACATCAG +
Preference number: 4 (lower is better)
Translates to: GLCGERLTPLAP*GFLWSSRPRHQ
Trigger: CTGATGTCTGGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCCACACAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTAGGCCTGACTGTCCTGTaGGGCCAGGAAGTCCTTGAG +
Preference number: 4 (lower is better)
Translates to: CPSFPGTPGVPGSPREPLGLTVL*GQEVLE
Trigger: CTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCC...TAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR TCA 90 bp CTGCAGGGGCTGTGTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTGACCTGCTTCTCCTTTaGCACCAGGAACGCCATCCA +
Preference number: 4 (lower is better)
Translates to: LQGLCHSSRGAGKLPVCADLLLL*HQERHP
Trigger: TGGATGGCGTTCCTGGTGTCAAAGGAGAAGCAGGTC...AGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGACACAGCCCCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTGGCCCCTCCACAGGGTaGCCAGGAGTGCCAGGTAAG +
Preference number: 4 (lower is better)
Translates to: AEQKQEAPGTGLIIRHHVGPSTG*PGVPGK
Trigger: CTTACCTGGCACTCCTGGTCACCCTGTGGAGGGGCC...AACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCAATCCAATGACACCTTaGAACCCTGGCAAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVNPMTP*NPGKPL
Trigger: AAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATT...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTCCTTCTCACCGGGGCTaGCTGGGAAGCCAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPPSHRG*LGSQQG
Trigger: GCCTTGCTGGCTTCCCAGGCAGCCCCGGTGAGAAGG...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCGCCAATGCCCGGCATaGCTTGGAATCCTGGGTCTC +
Preference number: 4 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHRQCPA*LGILGL
Trigger: GAGACCCAGGATTCCAAGGCATGCCGGGCATTGGCG...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACAGCATCCTGGGATACCTaGGGGACCTGGAGGGCCATC +
Preference number: 4 (lower is better)
Translates to: TPRRAEARSARHRAHYQTASWDT*GTWRAI
Trigger: GATGGCCCTCCAGGTCCCCCAGGTATCCCAGGATGC...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTCCCAGGAGGGCCCTaGTCCCCGGGTGGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMVPGGP*SPGGPG
Trigger: ACCTGGACCACCCGGGGACCAGGGCCCTCCTGGGAC...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp AATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCGGCCTGGTTGCCCTTTaGGTCCTGGAAGCCCAATGC +
Preference number: 4 (lower is better)
Translates to: NVTSSIVVRVCPPATCPLGLVAL*VLEAQC
Trigger: GCATTGGGCTTCCAGGACTCAAAGGGCAACCAGGCC...GAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTACTCCAGGTGTCCCCTaGTGTCCAGGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPTPGVP*CPGRPG
Trigger: CCCTGGCCTTCCTGGACAGCAGGGGACACCTGGAGT...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGTTCGCAGCTCCCCTaGCTTCAAGGTGGATGGCGT +
Preference number: 4 (lower is better)
Translates to: ERSWEVACVCSGVKCLPGCSQLP*LQGGWR
Trigger: ACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACA...TCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR CCA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGACACCTTGCAACCCTaGCAAGCCTCTTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPDTLQP*QASFSL
Trigger: AAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCTGTACCGGGAATGCCTaGAAGGCCTGGTTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: AREELGSCLCVLRCEMPACTGNA*KAWLPF
Trigger: AAAGGGCAACCAGGCCTTCCAGGCATTCCCGGTACA...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTGCCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACTTCACCTTTAGAACCTaGGAACCCTGGAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPAHPSQVLLVFQGLLGNFTFRT*EPWNSR
Trigger: CCTGGAGTTCCAGGGTTCCCAGGTTCTAAAGGTGAA...GTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp CCTGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTGTCCACATGCTCCATaGATCCTGGCATGCCAGGAA +
Preference number: 4 (lower is better)
Translates to: PAHPSQVLLVFQGLLGNLCPHAP*ILACQE
Trigger: TTCCTGGCATGCCAGGATCCATGGAGCATGTGGACA...AAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGCCCGGCTCTCCCTTCTaGCCAGCTGGGCCTGTGGGG +
Preference number: 4 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLPGSPF*PAGPVG
Trigger: CCCCACAGGCCCAGCTGGCCAGAAGGGAGAGCCGGG...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCCCTGTCTCTCCTTTCTaGCCAGGAGCACCATCGAAC +
Preference number: 4 (lower is better)
Translates to: AREELGSCLCVLRCEMPAPVSPF*PGAPSN
Trigger: GTTCGATGGTGCTCCTGGCCAGAAAGGAGAGACAGG...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGCAGCCCATCGGGGCCTaGTGGGCCAGGAAACCCTCT +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKQPIGA*WARKPS
Trigger: AGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTG...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCCCTCGTCCCTTTTGTaGCAGGAAGTCCAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHPSSLL*QEVQVL
Trigger: GAGAACCTGGACTTCCTGGCACAAAAGGGACGAGGG...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAACCTTTATCACCAGTGGGTCCGATTTGTCCTTTCTCTCCCTGGTCTCCTTTCAGGTAACCCTGGGGTaGCTGCTGGTCCTGGCGAGC +
Preference number: 4 (lower is better)
Translates to: GTFITSGSDLSFLSLVSFQVTLG*LLVLAS
Trigger: GCTCGCCAGGACCAGCAGGCACCCCAGGGTTACCTG...AAAGGAGACCAGGGAGAGAAAGGACAAATCGGACCCACTGGTGATAAAGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR GCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTTCACCCTTCTCTCCTaGCGACCCCGGGATTCCATC +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPFTLLS*RPRDSI
Trigger: GATGGAATCCCGGGGTCGGCAGGAGAGAAGGGTGAA...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGGGACCCATGAACCCTTaGTCGCCTTTGACTCCAGGA +
Preference number: 4 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQGPMNP*SPLTPG
Trigger: TCCTGGAGTCAAAGGCGAGCAAGGGTTCATGGGTCC...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCACCCTTTTGTCCTGGTaGTCCATGTGGCCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPTLLSW*SMWPLR
Trigger: CCTGAGGGGCCACATGGACCACCAGGACAAAAGGGT...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATGATACCTGGGGGACCTaGAGGGCCATCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: LLLQQTEANEAGCVSYANDTWGT*RAILAR
Trigger: CCTGGCCAAGATGGCCCTCCAGGTCCCCCAGGTATC...ATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACGCATCCTGGGATACCTaGGGGACCTGGAGGGCCATC +
Preference number: 4 (lower is better)
Translates to: KQRPTKRGVLVTRIPIRHASWDT*GTWRAI
Trigger: GATGGCCCTCCAGGTCCCCCAGGTATCCCAGGATGC...GTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGTTCTCCCCTTTCACCTaGGAAGCCTGGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: VTAREELGSCLCVLRCEMFSPFT*EAWSTS
Trigger: GCTGGTGCTCCAGGCTTCCCAGGTGAAAGGGGAGAA...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAGGGTGGCCCTATTCCTaGGACCCCTGGTGGACCTGC +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPIGWPYS*DPWWTC
Trigger: GCAGGTCCACCAGGGGTCCCAGGAATAGGGCCACCC...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTGGTCCTGGCGAGCCTaGTTGTCCCGGGGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: KQRPTKRGVLVTRIPIRHWSWRA*LSRGSH
Trigger: ATGGGAACCCCGGGACAACCAGGCTCGCCAGGACCA...GTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACTTCCCAGGTACTCCTaGTGTTCCAGGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: TPRRAEARSARHRAHYQTLPRYS*CSRVSS
Trigger: CGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAG...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGCAGGCCTGGGCTTCCTaGATGGCCGATGTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQQAWAS*MADVPR
Trigger: CCGGGGAACATCGGCCATCCAGGAAGCCCAGGCCTG...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTCCCGGCTCTCCCTTCTaGCCAGCTGGGCCTGTGGGG +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLPGSPF*PAGPVG
Trigger: CCCCACAGGCCCAGCTGGCCAGAAGGGAGAGCCGGG...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCATGCCTTGGAATCCTaGGTCTCCCTTAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: VTAREELGSCLCVLRCEMHALES*VSLRAW
Trigger: CCAGGCCCTAAGGGAGACCCAGGATTCCAAGGCATG...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATACCCATCGGGGCCTGGTaGGCCAGGAAACCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPIPIGAW*ARKPSW
Trigger: CCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGG...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGACACAGATGGGGTACCTaGGGGACCCATGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRHRWGT*GTHGSW
Trigger: CCAGGATCCATGGGTCCCCCAGGTACCCCATCTGTG...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATCCCAAGTCCTGCCCGTaGGCACGCTCGTTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: EANEAGCVSYANPYKALYPKSCP*ARSLPW
Trigger: CCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGG...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGCCAGGTTCACCTTTCTaGCCCTTTTCTCCTGTTGGG +
Preference number: 4 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQPGSPF*PFSPVG
Trigger: CCCAACAGGAGAAAAGGGTCAGAAAGGTGAACCTGG...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp AATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCGACCTGCTTCTCCTTTaGCACCAGGAACGCCATCCA +
Preference number: 4 (lower is better)
Translates to: NVTSSIVVRVCPPATCPLDLLLL*HQERHP
Trigger: TGGATGGCGTTCCTGGTGTCAAAGGAGAAGCAGGTC...GAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAGAAAGGGCATGGTGCTaGACTTACGCAGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRERAWC*TYAGSC
Trigger: GCAGCTGCCTGCGTAAGTTCAGCACCATGCCCTTTC...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAACACTTGGCAGCGGCTaGCGTGTGTTCGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPITLGSG*RVFAAP
Trigger: GGGAGCTGCGAACACACGTCAGCCGCTGCCAAGTGT...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR GCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACATCTCCCTGCGGGCCCTaGCGGCCTGGGAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTSPCGP*RPGRPG
Trigger: CCCAGGTCTCCCAGGCCGGCAGGGCCCGCAGGGAGA...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTTCTCCCTGCGGGCCCTaGCGGCCTGGGAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: YGKSVIQSVVSVANPENTSPCGP*RPGRPG
Trigger: CCCAGGTCTCCCAGGCCGGCAGGGCCCGCAGGGAGA...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCGTTGACACTCCACAATaGCATTTGTGTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: AREELGSCLCVLRCEMPAVDTPQ*HLCGLA
Trigger: AGCCAGGCCACACAAATGGCATTGTGGAGTGTCAAC...GGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp ATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCCCATGGATCCTGGCATaGCAGGAAGCCCAACGTCAC +
Preference number: 4 (lower is better)
Translates to: IRSAIWYVPLWKALRCLSPWILA*QEAQRH
Trigger: GTGACGTTGGGCTTCCTGGCATGCCAGGATCCATGG...GGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACAAAGCTGGAGCCCATCTaGCCCTTTTCTCCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: TPRRAEARSARHRAHYQTKLEPI*PFSPGG
Trigger: ACCTCCTGGAGAAAAGGGCCAGATGGGCTCCAGCTT...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCCTGGAGGGCCTGGTTaGCCTGGTGTTCCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRPGGPG*PGVPGK
Trigger: TTTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGG...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGTTCACCTGTCAAACCTaGCTGTCCTGGAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: VTAREELGSCLCVLRCEMFTCQT*LSWSPR
Trigger: CCTGGGACTCCAGGACAGCCAGGTTTGACAGGTGAA...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGAAGTCCTGCAGCTCCTaGGGGGCCAGGGAGTGGGAC +
Preference number: 4 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLKSCSS*GAREWD
Trigger: GTCCCACTCCCTGGCCCCCCAGGAGCTGCAGGACTT...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTATCAGCCTTTATCGCCTTTaGGGCCAGGCATATCCAGTC +
Preference number: 4 (lower is better)
Translates to: PILPRYSWCSRVSSGTFISLYRL*GQAYPV
Trigger: GACTGGATATGCCTGGCCCCAAAGGCGATAAAGGCT...GATAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCAGCCAGGGTCGCCCCTaGGTCCTGAGGAGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTSQGRP*VLRSPE
Trigger: TTCCGGGCTCCTCAGGACCCAGGGGCGACCCTGGCT...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGTCCACATGCTCCATaGATCCTGGCATGCCAGGAA +
Preference number: 4 (lower is better)
Translates to: ERSWEVACVCSGVKCLPGCPHAP*ILACQE
Trigger: TTCCTGGCATGCCAGGATCCATGGAGCATGTGGACA...TCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTGAGTCCAGGGGATCCTaGTGTCCCACTAAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: ARSARHRAHYQTPCLGMGESRGS*CPTKAW
Trigger: CCAGGCCTTAGTGGGACACCAGGATCCCCTGGACTC...ACCCATTCCTAAACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCCCCTGGGGGACACAGTaGGTCATCTGTTGTCTGACT +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPPWGTQ*VICCLT
Trigger: AGTCAGACAACAGATGACCCACTGTGTCCCCCAGGG...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
3UTR CAA 72 bp CTCGAGGGACCTGATGTGGAAACACTGGACAGTGGGTaGGACAGCACTCACATCTGGGGTGACAGGATGAAG +
Preference number: 4 (lower is better)
Translates to: LEGPDVETLDSG*DSTHIWGDRMK
Trigger: CTTCATCCTGTCACCCCAGATGTGAGTGCTGTCCAACCCACTGTCCAGTGTTTCCACATCAGGTCCCTCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGTCCTGGCAACCCTGGTaGGCCCGGCATCCCGGGGAT +
Preference number: 4 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTSWQPW*ARHPGD
Trigger: ATCCCCGGGATGCCGGGCTCACCAGGGTTGCCAGGA...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATGCCAGGGACACCCTGTaGGCCAGGGATGCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNARDTL*ARDARH
Trigger: GTGCCTGGCATCCCTGGCTCACAGGGTGTCCCTGGC...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGGCCCCTCCACAGGGTaGCCAGGAGTGCCAGGTAAG +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSAGPSTG*PGVPGK
Trigger: CTTACCTGGCACTCCTGGTCACCCTGTGGAGGGGCC...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCCTGTCCGGGATGCCCTaGCTGCCCATCCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFLSGMP*LPILPR
Trigger: CCTGGGAAGGATGGGCAGGCAGGGCATCCCGGACAG...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCGAGCCTGTCACACCTTaGTGTCCTTTTGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPEPVTP*CPFGPG
Trigger: ACCAGGTCCAAAAGGACAGCAAGGTGTGACAGGCTC...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTGCCGTACCCAAGTCCTaGCCGTGGGCACGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSAVPKS*PWARSL
Trigger: CAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGC...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACTCCCGGAGGCCCCTGTaGCCCTGGAGGGCCACGAAG +
Preference number: 4 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYSRRPL*PWRATK
Trigger: CTTCGTGGCCCTCCAGGGCCACAGGGGCCTCCGGGA...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGCTTCCCAGGTACTCCTaGTGTTCCAGGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKLPRYS*CSRVSS
Trigger: CGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAG...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTACACCTTGGTCTCCCTaGTCTCCTTTCACTCCCTGC +
Preference number: 4 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPTPWSP*SPFTPC
Trigger: GCAGGGAGTGAAAGGAGACCAGGGAGACCAAGGTGT...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGGGACCTGGTGGTCCCTaGAGTCCTTTAAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRGPGGP*SPLRPG
Trigger: CCCTGGTCTTAAAGGACTCCAGGGACCACCAGGTCC...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCCCCATCGGGGCCTGGTaGGCCAGGAAACCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFPIGAW*ARKPSW
Trigger: CCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGG...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTCAGCCCATCGGGGCCTaGTGGGCCAGGAAACCCTCT +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSAQPIGA*WARKPS
Trigger: AGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTG...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCTCTCTATGGTGGCGAGCCAAAAGCTGTAAGCATTTGCGTAGTAATTGCACGCAGCCCATCGGGGCCTaGTGGGCCAGGAAACCCTCT +
Preference number: 4 (lower is better)
Translates to: FSLWWRAKSCKHLRSNCTQPIGA*WARKPS
Trigger: AGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTG...CGTGCAATTACTACGCAAATGCTTACAGCTTTTGGCTCGCCACCATAGAGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCAGAGATGGGTGCCATaGACATGGGCATGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: LLLQQTEANEAGCVSYANQRWVP*TWAWAL
Trigger: CAGAGCCCATGCCCATGTCCATGGCACCCATCTCTG...ATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCACGTTCCTCTGCCGTaGCACTCGATGAATGGGGCG +
Preference number: 4 (lower is better)
Translates to: YWIRSAIWYVPLWKALRCHVPLP*HSMNGA
Trigger: CGCCCCATTCATCGAGTGCCACGGCAGAGGAACGTG...GCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR TCA 90 bp CTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATACTTGGTCCTGGCAATaGCACGCCTGGAAATCCCTG +
Preference number: 4 (lower is better)
Translates to: LLLQQTEANEAGCVSYANTWSWQ*HAWKSL
Trigger: CAGGGATTTCCAGGCGTGTCATTGCCAGGACCAAGT...ATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TCCTCGGGAACCTTTATCACCAGTGGGTCCGATTTGTCCTTTCTCTCCCTGGTCAGGCCAGGAAGTCCTTaGGAGCCTTTATCGCCTTTG +
Preference number: 4 (lower is better)
Translates to: SSGTFITSGSDLSFLSLVRPGSP*EPLSPL
Trigger: CAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCT...GACCAGGGAGAGAAAGGACAAATCGGACCCACTGGTGATAAAGGTTCCCGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR TCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACGCCAGGGACACCCTGTaGGCCAGGGATGCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: RRKPSALYLTTGSTLELDARDTL*ARDARH
Trigger: GTGCCTGGCATCCCTGGCTCACAGGGTGTCCCTGGC...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGGAAAGGGCATGGTGCTaGACTTACGCAGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQERAWC*TYAGSC
Trigger: GCAGCTGCCTGCGTAAGTTCAGCACCATGCCCTTTC...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCA +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKIADPQ*GPTVRA
Trigger: TGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTAT...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR GCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTTCGCAGCTGCTCGGCTaGGCTCCTCGTGGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLSQLLG*APRGAE
Trigger: TTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGA...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAATCACCCTTCTCTCCCTaGGGGCCCTGCCGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKSPFSP*GPCRPG
Trigger: CCCAGGCCGGCAGGGCCCGCAGGGAGAGAAGGGTGA...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATACCTTCTCACCGGGGCTaGCTGGGAAGCCAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCIPSHRG*LGSQQG
Trigger: GCCTTGCTGGCTTCCCAGGCAGCCCCGGTGAGAAGG...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATTTCACCCTTCTCTCCTaGCGACCCCGGGATTCCATC +
Preference number: 4 (lower is better)
Translates to: EANEAGCVSYANPYKALYFTLLS*RPRDSI
Trigger: GATGGAATCCCGGGGTCGGCAGGAGAGAAGGGTGAA...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGCAGGGTGACCAGGAGTaGCAGGTAAGCCAGGTTGTC +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMQGDQE*QVSQVV
Trigger: GACAACCTGGCTTACCTGGCACTCCTGGTCACCCTG...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAGAGCCTGTCACACCTTaGTGTCCTTTTGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTREPVTP*CPFGPG
Trigger: ACCAGGTCCAAAAGGACAGCAAGGTGTGACAGGCTC...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATATGTTCGCAGCTCCCCTaGCTTCAAGGTGGATGGCGT +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPICSQLP*LQGGWR
Trigger: ACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACA...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR CCA 90 bp TATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCACCCTTTTGTCCTGGTaGTCCATGTGGCCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: YWIRSAIWYVPLWKALRCTLLSW*SMWPLR
Trigger: CCTGAGGGGCCACATGGACCACCAGGACAAAAGGGT...GCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAACGGGCCCTGCCGGCCTaGGAGACCTGGGTACCCGGA +
Preference number: 4 (lower is better)
Translates to: QFIFYWIRSAIWYVPLWKRALPA*ETWVPG
Trigger: TCCGGGTACCCAGGTCTCCCAGGCCGGCAGGGCCCG...TTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCCAAACCTGGCTGTCCTaGAGTCCCAGGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFQTWLS*SPRRAL
Trigger: CAGGGCCCTCCTGGGACTCCAGGACAGCCAGGTTTG...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGGGGTCCAGGGAGTCCTaGGTGGCCATCTCTTCCGGG +
Preference number: 4 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTGSRES*VAISSG
Trigger: CCCGGAAGAGATGGCCACCCAGGACTCCCTGGACCC...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGGTCCAGGGAGTCCTaGGTGGCCATCTCTTCCGGG +
Preference number: 4 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSGSRES*VAISSG
Trigger: CCCGGAAGAGATGGCCACCCAGGACTCCCTGGACCC...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAATGGGGCCAACTCCTaGGGGTCCAGGAGGGCCGAT +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLNGANS*GSRRAD
Trigger: ATCGGCCCTCCTGGACCCCCAGGAGTTGGCCCCATT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGTCCTGCCTCACCCTTTaGGCCTGGAAGACCTGGGGA +
Preference number: 4 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLSCLTL*AWKTWG
Trigger: TCCCCAGGTCTTCCAGGCCCAAAGGGTGAGGCAGGA...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGACGTCCTGGGGTTCCTaGGAAGCCTCGGTCACCTTG +
Preference number: 4 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLTSWGS*EASVTL
Trigger: CAAGGTGACCGAGGCTTCCCAGGAACCCCAGGACGT...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATACTCCAACTGATCCTTTaGGTCCAGGGAGTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPILQLIL*VQGVQG
Trigger: CCCCTGGACTCCCTGGACCCAAAGGATCAGTTGGAG...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTGTCCTCGGTCTCCTTTaGGCCCCTCCACAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSVLGLL*APPQGD
Trigger: GTCACCCTGTGGAGGGGCCCAAAGGAGACCGAGGAC...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGGGCCCAGGGGGACCTTaGAGACCTTTAGGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTGPGGP*RPLGPG
Trigger: ACCCGGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCC...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGGCCCAGGGGGACCTTaGAGACCTTTAGGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSGPGGP*RPLGPG
Trigger: ACCCGGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCC...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACCCTGTCTCTCCTTTCTaGCCAGGAGCACCATCGAAC +
Preference number: 4 (lower is better)
Translates to: KQRPTKRGVLVTRIPIRHPVSPF*PGAPSN
Trigger: GTTCGATGGTGCTCCTGGCCAGAAAGGAGAGACAGG...GTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTCCCATCGGGGCCTGGTaGGCCAGGAAACCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSPIGAW*ARKPSW
Trigger: CCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGG...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCAAGAATTTTGGTCCCTaGGGGACACAGTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: LLQQTEANEAGCVSYANPKNFGP*GTQWVI
Trigger: GATGACCCACTGTGTCCCCCAGGGACCAAAATTCTT...GGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGCAGAGATGGGTGCCATaGACATGGGCATGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMQRWVP*TWAWAL
Trigger: CAGAGCCCATGCCCATGTCCATGGCACCCATCTCTG...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGGCCTGGTTGCCCTTTaGGTCCTGGAAGCCCAATGC +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSAGLVAL*VLEAQC
Trigger: GCATTGGGCTTCCAGGACTCAAAGGGCAACCAGGCC...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAGGACCTGCTGGGCCTTaGACTCCAGGAGGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMEGPAGP*TPGGPG
Trigger: CCCAGGGCCTCCTGGAGTTCAAGGCCCAGCAGGTCC...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGAGGCCAGGAAGTCCTTaGGAGCCTTTATCGCCTTTG +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKRPGSP*EPLSPL
Trigger: CAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCT...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCAAGCCAGGTTGTCCTTaGGGGCCAGGAGGACCCATG +
Preference number: 4 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTKPGCP*GPGGPM
Trigger: CATGGGTCCTCCTGGCCCTCAAGGACAACCTGGCTT...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCA +
Preference number: 4 (lower is better)
Translates to: EANEAGCVSYANPYKALYIADPQ*GPTVRA
Trigger: TGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTAT...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR TCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATACACTTGGCAGCGGCTaGCGTGTGTTCGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNTLGSG*RVFAAP
Trigger: GGGAGCTGCGAACACACGTCAGCCGCTGCCAAGTGT...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR GCA 90 bp TTCTCTCTATGGTGGCGAGCCAAAAGCTGTAAGCATTTGCGTAGTAATTGCACGCTTTCTCTCCCGGGATaGCTGGACGTCCTGGGGTTC +
Preference number: 4 (lower is better)
Translates to: FSLWWRAKSCKHLRSNCTLSLPG*LDVLGF
Trigger: GAACCCCAGGACGTCCAGGCATCCCGGGAGAGAAAG...CGTGCAATTACTACGCAAATGCTTACAGCTTTTGGCTCGCCACCATAGAGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTCAGGTGTACCGGGAATaGCTGGAAGGCCTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLQVYRE*LEGLVA
Trigger: GGCAACCAGGCCTTCCAGGCATTCCCGGTACACCTG...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGGACCCCTGGTGGACCTaGTGGGCCTTGAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGDPWWT*WALNSR
Trigger: CCTGGAGTTCAAGGCCCAGCAGGTCCACCAGGGGTC...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGTCTCCTTTCACTCCCTaGAGACCAGGAAGCCCTTTC +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKSPFTP*RPGSPF
Trigger: GAAAGGGCTTCCTGGTCTGCAGGGAGTGAAAGGAGA...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCGTCCCCAGAGATGGGTaGCATGGACATGGGCATGGG +
Preference number: 4 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTVPRDG*HGHGHG
Trigger: CCCATGCCCATGTCCATGGCACCCATCTCTGGGGAC...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTCTCTCCTCTCAACCCTaGTGCTCCTGGGTAGCCTCG +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSALSSQP*CSWVAS
Trigger: CGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAG...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTGCCCTGGTCCCCGGGTaGTCCAGGTTGACACTCCAC +
Preference number: 4 (lower is better)
Translates to: YGKSVIQSVVSVANPENTALVPG*SRLTLH
Trigger: GTGGAGTGTCAACCTGGACCACCCGGGGACCAGGGC...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGTTCACCTGTCAAACCTaGCTGTCCTGGAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQFTCQT*LSWSPR
Trigger: CCTGGGACTCCAGGACAGCCAGGTTTGACAGGTGAA...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTAGGCCCCTGTGGCCCTaGAGGGCCACGAAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: YGKSVIQSVVSVANPENTRPLWP*RATKSF
Trigger: GAAGGACTTCGTGGCCCTCCAGGGCCACAGGGGCCT...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAATGGGGCCAACTCCTaGGGGTCCAGGAGGGCCGAT +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHNGANS*GSRRAD
Trigger: ATCGGCCCTCCTGGACCCCCAGGAGTTGGCCCCATT...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTAAGTCCTGCAGCTCCTaGGGGGCCAGGGAGTGGGAC +
Preference number: 4 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSKSCSS*GAREWD
Trigger: GTCCCACTCCCTGGCCCCCCAGGAGCTGCAGGACTT...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATTTGCCCTTTGAGTCCTaGAAGCCCAATGCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LLLQQTEANEAGCVSYANLPFES*KPNARF
Trigger: GAACCTGGCATTGGGCTTCCAGGACTCAAAGGGCAA...ATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGCCCTGGTGGACCTGCTaGGCCTTGAACTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLPWWTC*ALNSRR
Trigger: CCTCCTGGAGTTCAAGGCCCAGCAGGTCCACCAGGG...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCTGGTCCTGGCGAGCCTaGTTGTCCCGGGGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSWSWRA*LSRGSH
Trigger: ATGGGAACCCCGGGACAACCAGGCTCGCCAGGACCA...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACCAGGCCTGGGCTTCCTaGATGGCCGATGTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: RRKPSALYLTTGSTLELDQAWAS*MADVPR
Trigger: CCGGGGAACATCGGCCATCCAGGAAGCCCAGGCCTG...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGGGGAAGCCTCTTCCTaGAACACCTTGTTCACCCTT +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKGEASS*NTLFTL
Trigger: AAGGGTGAACAAGGTGTTCCAGGAAGAGGCTTCCCC...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGACATCGTAGGGACCTaGAGGCCCAGGGGGACCTTG +
Preference number: 4 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLDIVGT*RPRGTL
Trigger: CAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTC...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACAGGACCAGGGAGCCCTaGTTCTCCTTTGATGACATC +
Preference number: 4 (lower is better)
Translates to: KQRPTKRGVLVTRIPIRHRTREP*FSFDDI
Trigger: GATGTCATCAAAGGAGAACCAGGGCTCCCTGGTCCT...GTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCACAGATGGGGTACCTaGGGGACCCATGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTHRWGT*GTHGSW
Trigger: CCAGGATCCATGGGTCCCCCAGGTACCCCATCTGTG...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGCCCTGGGGGACACAGTaGGTCATCTGTTGTCTGACT +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMPWGTQ*VICCLT
Trigger: AGTCAGACAACAGATGACCCACTGTGTCCCCCAGGG...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAACTGCGGAATCTGAATaGTCTGACTGTGTACCGCCA +
Preference number: 4 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRTAESE*SDCVPP
Trigger: TGGCGGTACACAGTCAGACCATTCAGATTCCGCAGT...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR CCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTCCCCTGCCTTCAAGGTaGATGGCGTGGGCTTCCATC +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSAPLPSR*MAWASI
Trigger: GATGGAAGCCCACGCCATCCACCTTGAAGGCAGGGG...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS-3UTR TCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGTGTCCCTTCACGCCATaGCAGTCACATTTTCCACAG +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKCPFTP*QSHFPQ
Trigger: CTGTGGAAAATGTGACTGTCATGGCGTGAAGGGACA...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CTGGATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATTCCTGGCAACCCTGGTaGGCCCGGCATCCCGGGGAT +
Preference number: 4 (lower is better)
Translates to: LDCKMQFIFYWIRSAIWYSWQPW*ARHPGD
Trigger: ATCCCCGGGATGCCGGGCTCACCAGGGTTGCCAGGA...ATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACTCGCAGCTGCTCGGCTaGGCTCCTCGTGGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: RRKPSALYLTTGSTLELDSQLLG*APRGAE
Trigger: TTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGA...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATCTTTCTCTCCCGGGATaGCTGGACGTCCTGGGGTTC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNLSLPG*LDVLGF
Trigger: GAACCCCAGGACGTCCAGGCATCCCGGGAGAGAAAG...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTCAGGTGTACCGGGAATaGCTGGAAGGCCTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSQVYRE*LEGLVA
Trigger: GGCAACCAGGCCTTCCAGGCATTCCCGGTACACCTG...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAACGCCGGGTCCCCCGATaGTACCCTTCTCTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKRRVPR*YPSLQV
Trigger: CACCTGGAGAGAAGGGTAGCATCGGGGGACCCGGCG...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTCAGGTAACCCTGGGGTaGCTGCTGGTCCTGGCGAGC +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSQVTLG*LLVLAS
Trigger: GCTCGCCAGGACCAGCAGGCACCCCAGGGTTACCTG...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCGTCCCGGAATCCCAATaGCAGGTAGACCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTVPESQ*QVDLTA
Trigger: GGCAGTCAGGTCTACCTGGCATTGGGATTCCGGGAC...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGGGTGGGTACTTTTAGTGAAATGTCACTTCAAGCATAGTGGTCCGAGTCTGAGTCCCAGGGAGACCTaGTTCTCCTTTGACACCAGG +
Preference number: 4 (lower is better)
Translates to: GGWVLLVKCHFKHSGPSLSPRET*FSFDTR
Trigger: CCTGGTGTCAAAGGAGAAGCAGGTCTCCCTGGGACT...CAGACTCGGACCACTATGCTTGAAGTGACATTTCACTAAAAGTACCCACCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGCCGGGATTCCATCGCTaGCCGGCTCTCCCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSEPGFHR*PALPSG
Trigger: GCCAGAAGGGAGAGCCGGGCAGCGATGGAATCCCGG...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACACAGGCGCCAATGCCCGGCATaGCTTGGAATCCTGGGTCTC +
Preference number: 4 (lower is better)
Translates to: RIPIRHFMVFIVDSEVHRRQCPA*LGILGL
Trigger: GAGACCCAGGATTCCAAGGCATGCCGGGCATTGGCG...CCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGGCCGTACCCAAGTCCTaGCCGTGGGCACGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: CVSYANPYKALYGFHSGQAVPKS*PWARSL
Trigger: CAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGC...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATGTCCCCAGAGATGGGTaGCATGGACATGGGCATGGG +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHVPRDG*HGHGHG
Trigger: CCCATGCCCATGTCCATGGCACCCATCTCTGGGGAC...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATTTGGTCCTTGGAAGCTaGAGCCCATCTGGCCCTTTT +
Preference number: 4 (lower is better)
Translates to: EANEAGCVSYANPYKALYLVLGS*SPSGPF
Trigger: AAAAGGGCCAGATGGGCTCCAGCTTCCAAGGACCAA...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCCCTGGAGGGCCTGGTTaGCCTGGTGTTCCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSPGGPG*PGVPGK
Trigger: TTTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGG...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGAGGCCCCTGTGGCCCTaGAGGGCCACGAAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: DSTVSPETKTKCALFNNRRPLWP*RATKSF
Trigger: GAAGGACTTCGTGGCCCTCCAGGGCCACAGGGGCCT...CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACACAGGCCAGGGAGTCCTGGGTaGCCATCTCTTCCGGGAGTT +
Preference number: 4 (lower is better)
Translates to: RIPIRHFMVFIVDSEVHRPGSPG*PSLPGV
Trigger: AACTCCCGGAAGAGATGGCCACCCAGGACTCCCTGG...CCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGTCCTGCCTCACCCTTTaGGCCTGGAAGACCTGGGGA +
Preference number: 4 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTSCLTL*AWKTWG
Trigger: TCCCCAGGTCTTCCAGGCCCAAAGGGTGAGGCAGGA...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACGTCACCTTGTGGCCCTaGGAAGCCAGGGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: RRKPSALYLTTGSTLELDVTLWP*EARGSW
Trigger: CCAGGATCCCCTGGCTTCCCAGGGCCACAAGGTGAC...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCCCTGGGCTTCCTGGATaGCCGATGTTCCCCGGAGAA +
Preference number: 4 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSPGLPG*PMFPGE
Trigger: TTCTCCGGGGAACATCGGCCATCCAGGAAGCCCAGG...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAGGGGAAGCCTCTTCCTaGAACACCTTGTTCACCCTT +
Preference number: 4 (lower is better)
Translates to: FSKQRPTKRGVLVTRIPIGEASS*NTLFTL
Trigger: AAGGGTGAACAAGGTGTTCCAGGAAGAGGCTTCCCC...TATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGTCTCCCTTAGGGCCTaGAACCCCCGGAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSVSLRA*NPRSSW
Trigger: CCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGAC...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTCATGCCTTGGAATCCTaGGTCTCCCTTAGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLHALES*VSLRAW
Trigger: CCAGGCCCTAAGGGAGACCCAGGATTCCAAGGCATG...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGCTGACCTTGAAATCCTaGAACTCCGGGCAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMLTLKS*NSGQSH
Trigger: ATGGGACTGCCCGGAGTTCCAGGATTTCAAGGTCAG...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAGAACCCAGGGACACCTaGAGGTCCAGGCAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKAEPRDT*RSRQAH
Trigger: GTGGGCTTGCCTGGACCTCCAGGTGTCCCTGGGTTC...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTGTCTGACTATGCCTaGTCACAAGGAAGCCATGGT +
Preference number: 4 (lower is better)
Translates to: IRSAIWYVPLWKALRCLSLSDYA*SQGSHG
Trigger: ACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAA...GGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTTTGTCTGACTATGCCTaGTCACAAGGAAGCCATGGT +
Preference number: 4 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPLSDYA*SQGSHG
Trigger: ACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAA...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTAAGAATTTTGGTCCCTaGGGGACACAGTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: ARSARHRAHYQTPCLGMGKNFGP*GTQWVI
Trigger: GATGACCCACTGTGTCCCCCAGGGACCAAAATTCTT...ACCCATTCCTAAACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAACCCAAGTCCTGCCCGTaGGCACGCTCGTTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKPKSCP*ARSLPW
Trigger: CCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGG...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACCCATGGACATGGGCATaGGCTCTGGCGTGGACAGCC +
Preference number: 4 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDPWTWA*ALAWTA
Trigger: GGCTGTCCACGCCAGAGCCCATGCCCATGTCCATGG...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCATGGACATGGGCATaGGCTCTGGCGTGGACAGCC +
Preference number: 4 (lower is better)
Translates to: HLLLDQERHLVCAIMESSPWTWA*ALAWTA
Trigger: GGCTGTCCACGCCAGAGCCCATGCCCATGTCCATGG...AGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGTGTCCCTTCACGCCATaGCAGTCACATTTTCCACAG +
Preference number: 4 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQCPFTP*QSHFPQ
Trigger: CTGTGGAAAATGTGACTGTCATGGCGTGAAGGGACA...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATGCCTATAAGCCCTGGTaGACCTTGTGGACCCGGCAA +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHAYKPW*TLWTRQ
Trigger: TTGCCGGGTCCACAAGGTTCACCAGGGCTTATAGGC...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTGGCCTGACTGTCCTGTaGGGCCAGGAAGTCCTTGAG +
Preference number: 4 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSGLTVL*GQEVLE
Trigger: CTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCC...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTAAGCCAGGTTGTCCTTaGGGGCCAGGAGGACCCATG +
Preference number: 4 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSKPGCP*GPGGPM
Trigger: CATGGGTCCTCCTGGCCCTCAAGGACAACCTGGCTT...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGGGGTCATCTGTTGTCTaGCTATGCCTGGTCACAAGG +
Preference number: 4 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLGSSVV*LCLVTR
Trigger: CCTTGTGACCAGGCATAGTCAGACAACAGATGACCC...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATGAAAGGGCATGGTGCTaGACTTACGCAGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNERAWC*TYAGSC
Trigger: GCAGCTGCCTGCGTAAGTTCAGCACCATGCCCTTTC...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTCTGCTCTTCCTGGCATaGCAGGCTGTCCCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSLLFLA*QAVPEN
Trigger: GTTTTCCGGGACAGCCTGGCATGCCAGGAAGAGCAG...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATACTGCTCTTCCTGGCATaGCAGGCTGTCCCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCILLFLA*QAVPEN
Trigger: GTTTTCCGGGACAGCCTGGCATGCCAGGAAGAGCAG...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATCCTGGAAGGCCTGGTTaGCCTTTGAGTCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHPGRPG*PLSPGS
Trigger: GCTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGG...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATCAGGGTGACCAGGAGTaGCAGGTAAGCCAGGTTGTC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNQGDQE*QVSQVV
Trigger: GACAACCTGGCTTACCTGGCACTCCTGGTCACCCTG...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTGTCCCCAGAGATGGGTaGCATGGACATGGGCATGGG +
Preference number: 4 (lower is better)
Translates to: YGKSVIQSVVSVANPENTVPRDG*HGHGHG
Trigger: CCCATGCCCATGTCCATGGCACCCATCTCTGGGGAC...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATATCCTGGTGGTCCATGTaGCCCCTCAGGTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCISWWSM*PLRSLH
Trigger: ATGCAAGGACCTGAGGGGCCACATGGACCACCAGGA...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAGATACCTGGGGGACCTaGAGGGCCATCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMEDTWGT*RAILAR
Trigger: CCTGGCCAAGATGGCCCTCCAGGTCCCCCAGGTATC...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGTGTACCGTTGCATCCTaGGATACCTGGGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGCTVAS*DTWGTW
Trigger: CCAGGTCCCCCAGGTATCCCAGGATGCAACGGTACA...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGTTTCTCTCCATATCCTaGTACTCCCGGAAATCCAGG +
Preference number: 4 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRFLSIS*YSRKSR
Trigger: CCTGGATTTCCGGGAGTACCAGGATATGGAGAGAAA...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCCAAACCTGGCTGTCCTaGAGTCCCAGGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESQTWLS*SPRRAL
Trigger: CAGGGCCCTCCTGGGACTCCAGGACAGCCAGGTTTG...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACCCAGGGAGTCCTGGGTaGCCATCTCTTCCGGGAGTT +
Preference number: 4 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDPGSPG*PSLPGV
Trigger: AACTCCCGGAAGAGATGGCCACCCAGGACTCCCTGG...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAACTCACCCTTTGGGCCTaGAAGACCTGGGGACCCAGG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMELTLWA*KTWGPR
Trigger: CCTGGGTCCCCAGGTCTTCCAGGCCCAAAGGGTGAG...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTGAAGCCAGGGGATCCTaGAAGTCCTGCAGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSEARGS*KSCSSW
Trigger: CCAGGAGCTGCAGGACTTCCAGGATCCCCTGGCTTC...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTACGTCCTGGGGTTCCTaGGAAGCCTCGGTCACCTTG +
Preference number: 4 (lower is better)
Translates to: HLLLDQERHLVCAIMESSTSWGS*EASVTL
Trigger: CAAGGTGACCGAGGCTTCCCAGGAACCCCAGGACGT...AGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTAAACTCCAGGAGGCCCTaGGTCACCTCTGATCCCCTG +
Preference number: 4 (lower is better)
Translates to: VTRIPIRHFMVFIVDSEVNSRRP*VTSDPL
Trigger: CAGGGGATCAGAGGTGACCCAGGGCCTCCTGGAGTT...TACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACAACTCCAGGAGGCCCTaGGTCACCTCTGATCCCCTG +
Preference number: 4 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYNSRRP*VTSDPL
Trigger: CAGGGGATCAGAGGTGACCCAGGGCCTCCTGGAGTT...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAACCCTGGTGGACCTGCTaGGCCTTGAACTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKPWWTC*ALNSRR
Trigger: CCTCCTGGAGTTCAAGGCCCAGCAGGTCCACCAGGG...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATGAGCCCGGAAGGCCATaGTCCCCTTTTTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNEPGRP*SPFSPG
Trigger: ACCTGGAGAAAAAGGGGACCATGGCCTTCCGGGCTC...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGTCCCTTGTCACCTTTTaGCCCATTGATTCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKSLVTF*PIDSWE
Trigger: TTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGA...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTAACCCCCGGAGCTCCTaGCCAACCTTGATTTCCCTT +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSNPRSS*PTLISL
Trigger: AAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTT...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACGGGCCGGGTACACCTTaGTCTCCCTGGTCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDGPGTP*SPWSPF
Trigger: GAAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCC...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTGGGCCGGGTACACCTTaGTCTCCCTGGTCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: HLLLDQERHLVCAIMESSGPGTP*SPWSPF
Trigger: GAAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCC...AGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGACATCGTAGGGACCTaGAGGCCCAGGGGGACCTTG +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKDIVGT*RPRGTL
Trigger: CAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTC...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCGACATCGTAGGGACCTaGAGGCCCAGGGGGACCTTG +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESDIVGT*RPRGTL
Trigger: CAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTC...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCGAACCCAGGGACACCTaGAGGTCCAGGCAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESEPRDT*RSRQAH
Trigger: GTGGGCTTGCCTGGACCTCCAGGTGTCCCTGGGTTC...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGAACCCAGGGACACCTaGAGGTCCAGGCAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSEEPRDT*RSRQAH
Trigger: GTGGGCTTGCCTGGACCTCCAGGTGTCCCTGGGTTC...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGTTGTCTGACTATGCCTaGTCACAAGGAAGCCATGGT +
Preference number: 4 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRLSDYA*SQGSHG
Trigger: ACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAA...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTCCCTGGGGGACACAGTaGGTCATCTGTTGTCTGACT +
Preference number: 4 (lower is better)
Translates to: FIGSGAPFGMCHYGKLSAPWGTQ*VICCLT
Trigger: AGTCAGACAACAGATGACCCACTGTGTCCCCCAGGG...AGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATACAGAGATGGGTGCCATaGACATGGGCATGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCIQRWVP*TWAWAL
Trigger: CAGAGCCCATGCCCATGTCCATGGCACCCATCTCTG...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCACTGCGGAATCTGAATaGTCTGACTGTGTACCGCCA +
Preference number: 4 (lower is better)
Translates to: YWIRSAIWYVPLWKALRCTAESE*SDCVPP
Trigger: TGGCGGTACACAGTCAGACCATTCAGATTCCGCAGT...GCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS-3UTR TCA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTGCCTATAAGCCCTGGTaGACCTTGTGGACCCGGCAA +
Preference number: 4 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSAYKPW*TLWTRQ
Trigger: TTGCCGGGTCCACAAGGTTCACCAGGGCTTATAGGC...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCACTCCCTTTGAACCTGTaGTCCCTGGAGAGCCGCCAA +
Preference number: 4 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKALPLNL*SLESRQ
Trigger: TTGGCGGCTCTCCAGGGATCACAGGTTCAAAGGGAG...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTGGGTCATCTGTTGTCTaGCTATGCCTGGTCACAAGG +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLGSSVV*LCLVTR
Trigger: CCTTGTGACCAGGCATAGTCAGACAACAGATGACCC...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGAGTTGCAGACGTTGTTaGTGTTGCAGAAGAGAAAGG +
Preference number: 4 (lower is better)
Translates to: QQTEANEAGCVSYANPYKSCRRC*CCRRER
Trigger: CCTTTCTCTTCTGCAACATCAACAACGTCTGCAACT...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTAGTTGCAGACGTTGTTaGTGTTGCAGAAGAGAAAGG +
Preference number: 4 (lower is better)
Translates to: ARSARHRAHYQTPCLGMGSCRRC*CCRRER
Trigger: CCTTTCTCTTCTGCAACATCAACAACGTCTGCAACT...ACCCATTCCTAAACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCACCTGGAAGGCCTGGTTaGCCTTTGAGTCCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKAPGRPG*PLSPGS
Trigger: GCTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGG...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAGTCCCGGAATCCCAATaGCAGGTAGACCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTVPESQ*QVDLTA
Trigger: GGCAGTCAGGTCTACCTGGCATTGGGATTCCGGGAC...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCGACACCTTGCAACCCTaGCAAGCCTCTTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFDTLQP*QASFSL
Trigger: AAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTC...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGTTTCTCTCCATATCCTaGTACTCCCGGAAATCCAGG +
Preference number: 4 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMFLSIS*YSRKSR
Trigger: CCTGGATTTCCGGGAGTACCAGGATATGGAGAGAAA...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCAGCACCAGCCTGGCCTaGAGTAGGGAAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESSTSLA*SRETWR
Trigger: CCTCCAGGTTTCCCTACTCCAGGCCAGGCTGGTGCT...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGAGCACCAGCCTGGCCTaGAGTAGGGAAACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSESTSLA*SRETWR
Trigger: CCTCCAGGTTTCCCTACTCCAGGCCAGGCTGGTGCT...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGAATGCCTGGAAGGCCTaGTTGCCCTTTGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLNAWKA*LPFESW
Trigger: CCAGGACTCAAAGGGCAACCAGGCCTTCCAGGCATT...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAGCCTTTATCGCCTTTaGGGCCAGGCATATCCAGTC +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLSLYRL*GQAYPV
Trigger: GACTGGATATGCCTGGCCCCAAAGGCGATAAAGGCT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCGAGTCCAGGGGATCCTaGTGTCCCACTAAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESESRGS*CPTKAW
Trigger: CCAGGCCTTAGTGGGACACCAGGATCCCCTGGACTC...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACACAGGTTCTCCAGGCGAACCTaGCAAGCCCATTCCTCCAAC +
Preference number: 4 (lower is better)
Translates to: RIPIRHFMVFIVDSEVHRFSRRT*QAHSSN
Trigger: GTTGGAGGAATGGGCTTGCCAGGTTCGCCTGGAGAA...CCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGATGCCCGGCATGCCTTaGAATCCTGGGTCTCCCTTA +
Preference number: 4 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGMPGMP*NPGSPL
Trigger: TAAGGGAGACCCAGGATTCCAAGGCATGCCGGGCAT...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGACACCTTGGTCTCCCTaGTCTCCTTTCACTCCCTGC +
Preference number: 4 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLTPWSP*SPFTPC
Trigger: GCAGGGAGTGAAAGGAGACCAGGGAGACCAAGGTGT...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTAGGACCAGGGAGCCCTaGTTCTCCTTTGATGACATC +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSRTREP*FSFDDI
Trigger: GATGTCATCAAAGGAGAACCAGGGCTCCCTGGTCCT...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTAGGACCTGGTGGTCCCTaGAGTCCTTTAAGACCAGGG +
Preference number: 4 (lower is better)
Translates to: VTRIPIRHFMVFIVDSEVGPGGP*SPLRPG
Trigger: CCCTGGTCTTAAAGGACTCCAGGGACCACCAGGTCC...TACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGCACAGATGGGGTACCTaGGGGACCCATGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: CVSYANPYKALYGFHSGQHRWGT*GTHGSW
Trigger: CCAGGATCCATGGGTCCCCCAGGTACCCCATCTGTG...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGGGTGGGTACTTTTAGTGAAATGTCACTTCAAGCATAGTGGTCCGAGTCTGAAGAATTTTGGTCCCTaGGGGACACAGTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: GGWVLLVKCHFKHSGPSLKNFGP*GTQWVI
Trigger: GATGACCCACTGTGTCCCCCAGGGACCAAAATTCTT...CAGACTCGGACCACTATGCTTGAAGTGACATTTCACTAAAAGTACCCACCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAACCATGGACATGGGCATaGGCTCTGGCGTGGACAGCC +
Preference number: 4 (lower is better)
Translates to: QFIFYWIRSAIWYVPLWKPWTWA*ALAWTA
Trigger: GGCTGTCCACGCCAGAGCCCATGCCCATGTCCATGG...TTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATATGTTGTCCCCAGAGATaGGTGCCATGGACATGGGCA +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCICCPQR*VPWTWA
Trigger: TGCCCATGTCCATGGCACCCATCTCTGGGGACAACA...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATTGTTGTCCCCAGAGATaGGTGCCATGGACATGGGCA +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHCCPQR*VPWTWA
Trigger: TGCCCATGTCCATGGCACCCATCTCTGGGGACAACA...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGAGGCCAGGAAGTCCTTaGGAGCCTTTATCGCCTTTG +
Preference number: 4 (lower is better)
Translates to: QFLQRRKPSALYLTTGSTRPGSP*EPLSPL
Trigger: CAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCT...CGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp GATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCCCTTTGAACCTGTaGTCCCTGGAGAGCCGCCAA +
Preference number: 4 (lower is better)
Translates to: DSTVSPETKTKCALFNNRLPLNL*SLESRQ
Trigger: TTGGCGGCTCTCCAGGGATCACAGGTTCAAAGGGAG...CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAGGCCCCTCAGGTCCTTaGATCCCGGGAAATCCAATG +
Preference number: 4 (lower is better)
Translates to: CNSSFIGSGAPFGMCHYGGPSGP*IPGNPM
Trigger: CATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCC...TCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCACCCTCGTCCCTTTTGTaGCAGGAAGTCCAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKAPSSLL*QEVQVL
Trigger: GAGAACCTGGACTTCCTGGCACAAAAGGGACGAGGG...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATAGTCCTGGAAGCCCAATaGCAGGTTCTCCCTTTTGAC +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCIVLEAQ*QVLPFD
Trigger: GTCAAAAGGGAGAACCTGGCATTGGGCTTCCAGGAC...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACTCCCCATGTCCACATaGTCCATGGATCCTGGCATG +
Preference number: 4 (lower is better)
Translates to: VTRIPIRHFMVFIVDSEVLPMST*SMDPGM
Trigger: CATGCCAGGATCCATGGAGCATGTGGACATGGGGAG...TACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAGTCCCAGGGAGACCTaGTTCTCCTTTGACACCAGG +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTSPRET*FSFDTR
Trigger: CCTGGTGTCAAAGGAGAAGCAGGTCTCCCTGGGACT...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAGGACCCATGAACCCTTaGTCGCCTTTGACTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTGPMNP*SPLTPG
Trigger: TCCTGGAGTCAAAGGCGAGCAAGGGTTCATGGGTCC...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATAGAGCCTGTCACACCTTaGTGTCCTTTTGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCIEPVTP*CPFGPG
Trigger: ACCAGGTCCAAAAGGACAGCAAGGTGTGACAGGCTC...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTGTACCGTTGCATCCTaGGATACCTGGGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: IHLLLDQERHLVCAIMESCTVAS*DTWGTW
Trigger: CCAGGTCCCCCAGGTATCCCAGGATGCAACGGTACA...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACAAGCTGGAGCCCATCTaGCCCTTTTCTCCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYKLEPI*PFSPGG
Trigger: ACCTCCTGGAGAAAAGGGCCAGATGGGCTCCAGCTT...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTTCACCTTTTGGTCCTTaGAAGCTGGAGCCCATCTGG +
Preference number: 4 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSSPFGP*KLEPIW
Trigger: CCAGATGGGCTCCAGCTTCCAAGGACCAAAAGGTGA...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATTCACCTTTTGGTCCTTaGAAGCTGGAGCCCATCTGG +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHSPFGP*KLEPIW
Trigger: CCAGATGGGCTCCAGCTTCCAAGGACCAAAAGGTGA...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATTCCCTTGTCACCTTTTaGTCCTTGGAAGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHSLVTF*SLEAGA
Trigger: GGCTCCAGCTTCCAAGGACCAAAAGGTGACAAGGGA...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTCTGTCCCGGAAAACCTaGGTCTCCTTTGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSLSRKT*VSFVTF
Trigger: AAAGGTGACAAAGGAGACCCAGGTTTTCCGGGACAG...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCTCTCTATGGTGGCGAGCCAAAAGCTGTAAGCATTTGCGTAGTAATTGCACGAGGAAATCCAATTCCTaGCTGGCCCACAGCACCTTT +
Preference number: 4 (lower is better)
Translates to: FSLWWRAKSCKHLRSNCTRKSNS*LAHSTF
Trigger: AAAGGTGCTGTGGGCCAGCCAGGAATTGGATTTCCT...CGTGCAATTACTACGCAAATGCTTACAGCTTTTGGCTCGCCACCATAGAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TACGGGAAGTCAGTCATTCAGTCTGTGGTTAGTGTTGCAAACCCTGAAAATACTAATGCCTGGAAGGCCTaGTTGCCCTTTGAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: YGKSVIQSVVSVANPENTNAWKA*LPFESW
Trigger: CCAGGACTCAAAGGGCAACCAGGCCTTCCAGGCATT...AGTATTTTCAGGGTTTGCAACACTAACCACAGACTGAATGACTGACTTCCCGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCTCTCTATGGTGGCGAGCCAAAAGCTGTAAGCATTTGCGTAGTAATTGCACGTTCACCTTTAGAACCTaGGAACCCTGGAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: FSLWWRAKSCKHLRSNCTFTFRT*EPWNSR
Trigger: CCTGGAGTTCCAGGGTTCCCAGGTTCTAAAGGTGAA...CGTGCAATTACTACGCAAATGCTTACAGCTTTTGGCTCGCCACCATAGAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAACTCCAACTGATCCTTTaGGTCCAGGGAGTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMELQLIL*VQGVQG
Trigger: CCCCTGGACTCCCTGGACCCAAAGGATCAGTTGGAG...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACATTCTCCAGGCGAACCTaGCAAGCCCATTCCTCCAAC +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTFSRRT*QAHSSN
Trigger: GTTGGAGGAATGGGCTTGCCAGGTTCGCCTGGAGAA...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTGGATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATCCTGGGCTTCCTGGATaGCCGATGTTCCCCGGAGAA +
Preference number: 4 (lower is better)
Translates to: LDCKMQFIFYWIRSAIWYPGLPG*PMFPGE
Trigger: TTCTCCGGGGAACATCGGCCATCCAGGAAGCCCAGG...ATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCAACCCACTTCACCCTTaGAGCCTTTGTCTCCTTTGG +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFNPLHP*SLCLLW
Trigger: CCAAAGGAGACAAAGGCTCCAAGGGTGAAGTGGGTT...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAACCCACTTCACCCTTaGAGCCTTTGTCTCCTTTGG +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLNPLHP*SLCLLW
Trigger: CCAAAGGAGACAAAGGCTCCAAGGGTGAAGTGGGTT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAAACCCCCGGAGCTCCTaGCCAACCTTGATTTCCCTT +
Preference number: 4 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKANPRSS*PTLISL
Trigger: AAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTT...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATACTGACCTTGAAATCCTaGAACTCCGGGCAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCILTLKS*NSGQSH
Trigger: ATGGGACTGCCCGGAGTTCCAGGATTTCAAGGTCAG...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGGACCAGGGAGCCCTaGTTCTCCTTTGATGACATC +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHRTREP*FSFDDI
Trigger: GATGTCATCAAAGGAGAACCAGGGCTCCCTGGTCCT...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCTGTCTCTCCTTTCTaGCCAGGAGCACCATCGAAC +
Preference number: 4 (lower is better)
Translates to: HLLLDQERHLVCAIMESSPVSPF*PGAPSN
Trigger: GTTCGATGGTGCTCCTGGCCAGAAAGGAGAGACAGG...AGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGACTTGGTCCTGGCAATaGCACGCCTGGAAATCCCTG +
Preference number: 4 (lower is better)
Translates to: CVSYANPYKALYGFHSGQTWSWQ*HAWKSL
Trigger: CAGGGATTTCCAGGCGTGTCATTGCCAGGACCAAGT...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp ATTCTAGGGTTCATTGCTGTTACAAATACAATGGGAGGGAGAAGAGGACAAGGGGCTCCTGGCCAACCTTaGTTTCCCTTGTCACCTTTT +
Preference number: 4 (lower is better)
Translates to: ILGFIAVTNTMGGRRGQGAPGQP*FPLSPF
Trigger: AAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGC...CCCTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAGCAATGAACCCTAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAATCCAATGACACCTTaGAACCCTGGCAAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLNPMTP*NPGKPL
Trigger: AAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAACTCCCCATGTCCACATaGTCCATGGATCCTGGCATG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMELPMST*SMDPGM
Trigger: CATGCCAGGATCCATGGAGCATGTGGACATGGGGAG...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CTGGATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATCTGGGGTTCCGGCACTaGCTTTCTCTCCCTTCTCAC +
Preference number: 4 (lower is better)
Translates to: LDCKMQFIFYWIRSAIWYLGFRH*LSLPSH
Trigger: GTGAGAAGGGAGAGAAAGGCAGTGCCGGAACCCCAG...ATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTTAGGAATGGGTAAAGCTGTAAGCATTTaGGTAGTAATTGCACGTTCC +
Preference number: 4 (lower is better)
Translates to: ARSARHRAHYQTPCLGMGKAVSI*VVIARS
Trigger: GGAACGTGCAATTACTACGCAAATGCTTACAGCTTT...ACCCATTCCTAAACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR CCA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGATCACCCTTTTGTCCTaGTGGTCCATGTGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: CVSYANPYKALYGFHSGQITLLS*WSMWPL
Trigger: GAGGGGCCACATGGACCACCAGGACAAAAGGGTGAT...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACTTGGTCCTTGGAAGCTaGAGCCCATCTGGCCCTTTT +
Preference number: 4 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYLVLGS*SPSGPF
Trigger: AAAAGGGCCAGATGGGCTCCAGCTTCCAAGGACCAA...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACGCTAGAACTTGACTCCCTTGTCACCTTTTaGTCCTTGGAAGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: RRKPSALYLTTGSTLELDSLVTF*SLEAGA
Trigger: GGCTCCAGCTTCCAAGGACCAAAAGGTGACAAGGGA...GTCAAGTTCTAGCGTAGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATCTGTCCCGGAAAACCTaGGTCTCCTTTGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNLSRKT*VSFVTF
Trigger: AAAGGTGACAAAGGAGACCCAGGTTTTCCGGGACAG...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGATGTACCGGGAATGCCTaGAAGGCCTGGTTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: CNSSFIGSGAPFGMCHYGCTGNA*KAWLPF
Trigger: AAAGGGCAACCAGGCCTTCCAGGCATTCCCGGTACA...TCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp AGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGGTTTAGGAGTGAGTTCCCTTGTCACCTTTTaGCCCATTGATTCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: RNGFGFGYLYTSSGLGVSSLVTF*PIDSWE
Trigger: TTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGA...ACTCACTCCTAAACCAGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAATGCCCGGCATGCCTTaGAATCCTGGGTCTCCCTTA +
Preference number: 4 (lower is better)
Translates to: CNSSFIGSGAPFGMCHYGMPGMP*NPGSPL
Trigger: TAAGGGAGACCCAGGATTCCAAGGCATGCCGGGCAT...TCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTACACCTTGGTCTCCCTaGTCTCCTTTCACTCCCTGC +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSTPWSP*SPFTPC
Trigger: GCAGGGAGTGAAAGGAGACCAGGGAGACCAAGGTGT...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCCATGGTAAAGAATTTTaGTCCCTGGGGGACACAGTG +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFHGKEF*SLGDTV
Trigger: CACTGTGTCCCCCAGGGACCAAAATTCTTTACCATG...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCTCTCTATGGTGGCGAGCCAAAAGCTGTAAGCATTTGCGTAGTAATTGCACGCATGGTAAAGAATTTTaGTCCCTGGGGGACACAGTG +
Preference number: 4 (lower is better)
Translates to: FSLWWRAKSCKHLRSNCTHGKEF*SLGDTV
Trigger: CACTGTGTCCCCCAGGGACCAAAATTCTTTACCATG...CGTGCAATTACTACGCAAATGCTTACAGCTTTTGGCTCGCCACCATAGAGAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAATGTTGTCCCCAGAGATaGGTGCCATGGACATGGGCA +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKCCPQR*VPWTWA
Trigger: TGCCCATGTCCATGGCACCCATCTCTGGGGACAACA...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACACAGGTGCCTTCAAGGTGGATaGCGTGGGCTTCTTGAACAT +
Preference number: 4 (lower is better)
Translates to: RIPIRHFMVFIVDSEVHRCLQGG*RGLLEH
Trigger: ATGTTCAAGAAGCCCACGCCATCCACCTTGAAGGCA...CCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR CCA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACTCAAGGTGGATGGCGTaGGCTTCCATCACGAAGGAA +
Preference number: 4 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDSRWMA*ASITKE
Trigger: TTCCTTCGTGATGGAAGCCCACGCCATCCACCTTGA...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS-3UTR CCA 90 bp TGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGATGCCTTCAAGGTGGATaGCGTGGGCTTCCATCACGA +
Preference number: 4 (lower is better)
Translates to: CNSSFIGSGAPFGMCHYGCLQGG*RGLPSR
Trigger: TCGTGATGGAAGCCCACGCCATCCACCTTGAAGGCA...TCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS-3UTR GCA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGTTTTTCCTTAACTTGTaGCTGTCCAGGAACTCCCGG +
Preference number: 4 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLFFLNL*LSRNSR
Trigger: CCGGGAGTTCCTGGACAGGCACAAGTTAAGGAAAAA...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGTCCTGGAAGCCCAATaGCAGGTTCTCCCTTTTGAC +
Preference number: 4 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKVLEAQ*QVLPFD
Trigger: GTCAAAAGGGAGAACCTGGCATTGGGCTTCCAGGAC...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTTCTCCTTTCACTCCCTaGAGACCAGGAAGCCCTTTC +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSSPFTP*RPGSPF
Trigger: GAAAGGGCTTCCTGGTCTGCAGGGAGTGAAAGGAGA...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp CAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAATCACCCTTTTGTCCTaGTGGTCCATGTGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: QFIFYWIRSAIWYVPLWKITLLS*WSMWPL
Trigger: GAGGGGCCACATGGACCACCAGGACAAAAGGGTGAT...TTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCACCCTTTTCTCCTGTTaGGGCAAAGTCTCCTTTTTC +
Preference number: 4 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFTLFSC*GKVSFF
Trigger: GAAAAAGGAGACTTTGCCCCAACAGGAGAAAAGGGT...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTTGCCCTTTGAGTCCTaGAAGCCCAATGCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: CVSYANPYKALYGFHSGQLPFES*KPNARF
Trigger: GAACCTGGCATTGGGCTTCCAGGACTCAAAGGGCAA...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGAGCCTTTATCGCCTTTaGGGCCAGGCATATCCAGTC +
Preference number: 4 (lower is better)
Translates to: DSTVSPETKTKCALFNNRSLYRL*GQAYPV
Trigger: GACTGGATATGCCTGGCCCCAAAGGCGATAAAGGCT...CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATCATGGTAAAGAATTTTaGTCCCTGGGGGACACAGTG +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHHGKEF*SLGDTV
Trigger: CACTGTGTCCCCCAGGGACCAAAATTCTTTACCATG...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTCCATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAGTGGCACTCGATGAATaGGGCGCTTCTAAACTCTTC +
Preference number: 4 (lower is better)
Translates to: FHLTFGPSLFHRKAMTSTVALDE*GASKLF
Trigger: GAAGAGTTTAGAAGCGCCCCATTCATCGAGTGCCAC...TGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR CCA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACCGCTTCTCTCTATGGTaGCGAGCCAAAAGCTGTAAG +
Preference number: 4 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYRFSLW*RAKSCK
Trigger: CTTACAGCTTTTGGCTCGCCACCATAGAGAGAAGCG...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS-3UTR TCA 90 bp TGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAGCTCCTGGCCAACCTTaGTTTCCCTTGTCACCTTTT +
Preference number: 4 (lower is better)
Translates to: CNSSFIGSGAPFGMCHYGAPGQP*FPLSPF
Trigger: AAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGC...TCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR TCA 90 bp CAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGGGTCATCTGTTGTCTaGCTATGCCTGGTCACAAGG +
Preference number: 4 (lower is better)
Translates to: QFIFYWIRSAIWYVPLWKGSSVV*LCLVTR
Trigger: CCTTGTGACCAGGCATAGTCAGACAACAGATGACCC...TTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GATAGTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGGTTGACACTCCACAATaGCATTTGTGTGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: DSTVSPETKTKCALFNNRVDTPQ*HLCGLA
Trigger: AGCCAGGCCACACAAATGGCATTGTGGAGTGTCAAC...CCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTACTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATACCCTTTTCTCCTGTTaGGGCAAAGTCTCCTTTTTC +
Preference number: 4 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNTLFSC*GKVSFF
Trigger: GAAAAAGGAGACTTTGCCCCAACAGGAGAAAAGGGT...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTTTCACCTTTAGAACCTaGGAACCCTGGAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSFTFRT*EPWNSR
Trigger: CCTGGAGTTCCAGGGTTCCCAGGTTCTAAAGGTGAA...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR GCA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAATTTTTCCTTAACTTGTaGCTGTCCAGGAACTCCCGG +
Preference number: 4 (lower is better)
Translates to: AIHLLLDQERHLVCAIMEFFLNL*LSRNSR
Trigger: CCGGGAGTTCCTGGACAGGCACAAGTTAAGGAAAAA...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CCA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATCTGTTACAAATACAATaGGAGGGAGAAGAGGACAAG +
Preference number: 4 (lower is better)
Translates to: EAGCVSYANPYKALYGFHLLQIQ*EGEEDK
Trigger: CTTGTCCTCTTCTCCCTCCCATTGTATTTGTAACAG...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS-3UTR TCA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTAGTTGCAGACGTTGTTaGTGTTGCAGAAGAGAAAGG +
Preference number: 4 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSSCRRC*CCRRER
Trigger: CCTTTCTCTTCTGCAACATCAACAACGTCTGCAACT...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
3UTR CAA 72 bp CAGTGCACTGGATTGCAAAATGCAATTCATCTTTTATaGGATCAGGAGCGCCATTTGGTATGTGCCATTATG +
Preference number: 4 (lower is better)
Translates to: QCTGLQNAIHLL*DQERHLVCAIM
Trigger: CATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAGTGCACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GAGCCACCACAATCGCCCTTCGCAGCTGCTCGGCTGCGCTCCTCGTaGAGCAGAAGGGCGGCGAAGAGCAGCAGAAGCCAGACGCTGAGC +
Preference number: 5 (lower is better)
Translates to: EPPQSPFAAARLRSS*SRRAAKSSRSQTLS
Trigger: GCTCAGCGTCTGGCTTCTGCTGCTCTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGAAGGGCGATTGTGGTGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TGGGCTTCCTGGATGGCCGATGTTCCCCGGAGAACCTCTCGGGCCTaGGGACCCTGGCATCCCTGGGGTTCCGGCACTGCCTTTCTCTCC +
Preference number: 5 (lower is better)
Translates to: WASWMADVPRRTSRA*GPWHPWGSGTAFLS
Trigger: GGAGAGAAAGGCAGTGCCGGAACCCCAGGGATGCCAGGGTCCCCAGGCCCGAGAGGTTCTCCGGGGAACATCGGCCATCCAGGAAGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCGAGCCTTTGTCTCCTTaGGAGCCAGGGAAGCCGGGG +
Preference number: 5 (lower is better)
Translates to: WGDRMKRAVGCVESASRPEPLSP*EPGKPG
Trigger: CCCCGGCTTCCCTGGCTCCAAAGGAGACAAAGGCTC...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 90 bp TTCCACAGCCAGAGCCACCACAATCGCCCTTCGCAGCTGCTCGGCTaGGCTCCTCGTGGAGCAGAAGGGCGGCGAAGAGCAGCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: FHSQSHHNRPSQLLG*APRGAEGRRRAAEA
Trigger: GGCTTCTGCTGCTCTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGAAGGGCGATTGTGGTGGCTCTGGCTGTGGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp CACAGCACCTTTCTCTCCCGGGATGCCTGGACGTCCTGGGGTTCCTaGGAAGCCTCGGTCACCTTGTGGCCCTGGGAAGCCAGGGGATCC +
Preference number: 5 (lower is better)
Translates to: HSTFLSRDAWTSWGS*EASVTLWPWEARGS
Trigger: GGATCCCCTGGCTTCCCAGGGCCACAAGGTGACCGAGGCTTCCCAGGAACCCCAGGACGTCCAGGCATCCCGGGAGAGAAAGGTGCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp ATTGATTCCTGGGAACCCTGGCGGCCCCATAGGTCCCGGATGCCCTaGCAGGCCAGGTTGACCCTGAGGTCCTCGGTCTCCTTTGGGCCC +
Preference number: 5 (lower is better)
Translates to: IDSWEPWRPHRSRMP*QARLTLRSSVSFGP
Trigger: GGGCCCAAAGGAGACCGAGGACCTCAGGGTCAACCTGGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCAGGAATCAAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TGTGATCCCTGGAGAGCCGCCAATGCCCGGCATGCCTTGGAATCCTaGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCCTGGCCAACC +
Preference number: 5 (lower is better)
Translates to: CDPWRAANARHALES*VSLRAWNPRSSWPT
Trigger: GGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCCAGGATTCCAAGGCATGCCGGGCATTGGCGGCTCTCCAGGGATCACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GGTACCTGGGGGACCCATGGATCCTGGCAGCCCATCGGGGCCTGGTaGGCCAGGAAACCCTCTTGGACCAGGTGGTCCAAAGGGTCCTGT +
Preference number: 5 (lower is better)
Translates to: GTWGTHGSWQPIGAW*ARKPSWTRWSKGSC
Trigger: ACAGGACCCTTTGGACCACCTGGTCCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTGCCAGGATCCATGGGTCCCCCAGGTACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS GCA 90 bp GGCCCTGCCGGCCTGGGAGACCTGGGTACCCGGAATCGCCAGGAATaGCCGGGCTCCCCCTTTCTCCTTTTTCACCGTCTTTCCCAGGTT +
Preference number: 5 (lower is better)
Translates to: GPAGLGDLGTRNRQE*PGSPFLLFHRLSQV
Trigger: AACCTGGGAAAGACGGTGAAAAAGGAGAAAGGGGGAGCCCGGGCATTCCTGGCGATTCCGGGTACCCAGGTCTCCCAGGCCGGCAGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TCCAATTCCTGGCTGGCCCACAGCACCTTTCTCTCCCGGGATGCCTaGACGTCCTGGGGTTCCTGGGAAGCCTCGGTCACCTTGTGGCCC +
Preference number: 5 (lower is better)
Translates to: SNSWLAHSTFLSRDA*TSWGSWEASVTLWP
Trigger: GGGCCACAAGGTGACCGAGGCTTCCCAGGAACCCCAGGACGTCCAGGCATCCCGGGAGAGAAAGGTGCTGTGGGCCAGCCAGGAATTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGGGTGACAGGATGAAGCGGGCTGTGGGCTGTGTGGAGAGCGCCTCACGCCCCAATGCCCGGCATGCCTaGGAATCCTGGGTCTCCCTT +
Preference number: 5 (lower is better)
Translates to: WGDRMKRAVGCVESASRPNARHA*ESWVSL
Trigger: AAGGGAGACCCAGGATTCCAAGGCATGCCGGGCATT...GGGGCGTGAGGCGCTCTCCACACAGCCCACAGCCCGCTTCATCCTGTCACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS TCA 90 bp AAATCCCGGAGGACCCACGGGTCCCTGGAGTCCTGGCAACCCTGGTaGGCCCGGCATCCCGGGGATACCAGGAAATCCTCTCTCCCCTTT +
Preference number: 5 (lower is better)
Translates to: KSRRTHGSLESWQPW*ARHPGDTRKSSLPF
Trigger: AAAGGGGAGAGAGGATTTCCTGGTATCCCCGGGATGCCGGGCTCACCAGGGTTGCCAGGACTCCAGGGACCCGTGGGTCCTCCGGGATTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp AGCCCCAGGTTGTCCAGGGAAACCAATCTCTCCCGGAGGCCCCTGTaGCCCTGGAGGGCCACGAAGTCCTTCTGTGTCACAGGCAAGGCA +
Preference number: 5 (lower is better)
Translates to: SPRLSRETNLSRRPL*PWRATKSFCVTGKA
Trigger: TGCCTTGCCTGTGACACAGAAGGACTTCGTGGCCCTCCAGGGCCACAGGGGCCTCCGGGAGAGATTGGTTTCCCTGGACAACCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCCCTGCAGGGGCTGTGTCAGGACCCATGAACCCTaGCTCGCCTTTGACTCCAGG +
Preference number: 5 (lower is better)
Translates to: SGPSLPSCDLSTPCRGCVRTHEP*LAFDSR
Trigger: CCTGGAGTCAAAGGCGAGCAAGGGTTCATGGGTCCT...GACACAGCCCCTGCAGGGAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS TCA 90 bp GGAAGGCCAGGGAGGCCTGACTGTCCTGTGAGGCCAGGAAGTCCTTaGGAGCCTTTATCGCCTTTGGGGCCAGGCATATCCAGTCCGGGG +
Preference number: 5 (lower is better)
Translates to: GRPGRPDCPVRPGSP*EPLSPLGPGISSPG
Trigger: CCCCGGACTGGATATGCCTGGCCCCAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCCTCCCTGGCCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209661.2
ENSMUST00000209735.2
CDS TCA 90 bp GTGTCCCCTGCTGTCCAGGAAGGCCAGGGAGGCCTGACTGTCCTGTaGGGCCAGGAAGTCCTTGAGAGCCTTTATCGCCTTTGGGGCCAG +
Preference number: 5 (lower is better)
Translates to: VSPAVQEGQGGLTVL*GQEVLESLYRLWGQ
Trigger: CTGGCCCCAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCCTCCCTGGCCTTCCTGGACAGCAGGGGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209661.2
ENSMUST00000209735.2
CDS CCA 90 bp AGGTTGTCCAGGGAAACCAATCTCTCCCGGAGGCCCCTGTGGCCCTaGAGGGCCACGAAGTCCTTCTGTGTCACAGGCAAGGCAGCTCTC +
Preference number: 5 (lower is better)
Translates to: RLSRETNLSRRPLWP*RATKSFCVTGKAAL
Trigger: GAGAGCTGCCTTGCCTGTGACACAGAAGGACTTCGTGGCCCTCCAGGGCCACAGGGGCCTCCGGGAGAGATTGGTTTCCCTGGACAACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GGGTCCCCCGATGCTACCCTTCTCTCCAGGTGTACCGGGAATGCCTaGAAGGCCTGGTTGCCCTTTGAGTCCTGGAAGCCCAATGCCAGG +
Preference number: 5 (lower is better)
Translates to: GSPDATLLSRCTGNA*KAWLPFESWKPNAR
Trigger: CCTGGCATTGGGCTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGGCATTCCCGGTACACCTGGAGAGAAGGGTAGCATCGGGGGACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp AGGACCAGGGAGCCCTGGTTCTCCTTTGATGACATCGTAGGGACCTaGAGGCCCAGGGGGACCTTGGAGACCTTTAGGGCCGGGTACACC +
Preference number: 5 (lower is better)
Translates to: RTREPWFSFDDIVGT*RPRGTLETFRAGYT
Trigger: GGTGTACCCGGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTCATCAAAGGAGAACCAGGGCTCCCTGGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS GCA 90 bp TTCTCTCCTTTAATTCCAGGTGGACCTGATGACCCTGGTGGTCCTTaGCCTCCGGGAGGGCCCATAGCTCCGGGTGGCCCTATTCCTGGG +
Preference number: 5 (lower is better)
Translates to: FSPLIPGGPDDPGGP*PPGGPIAPGGPIPG
Trigger: CCCAGGAATAGGGCCACCCGGAGCTATGGGCCCTCCCGGAGGGCAAGGACCACCAGGGTCATCAGGTCCACCTGGAATTAAAGGAGAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GAGCGGCCCTCTCTCTCCCTTTGTACCGTTGCATCCTGGGATACCTaGGGGACCTGGAGGGCCATCTTGGCCAGGAATACCAGGAAGTCC +
Preference number: 5 (lower is better)
Translates to: ERPSLSLCTVASWDT*GTWRAILARNTRKS
Trigger: GGACTTCCTGGTATTCCTGGCCAAGATGGCCCTCCAGGTCCCCCAGGTATCCCAGGATGCAACGGTACAAAGGGAGAGAGAGGGCCGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000208095.2
ENSMUST00000209735.2
CDS CCA 90 bp GCTCTCTCCTTTCTGACCTTTCTGTCCAACTTCACCTGTCAAACCTaGCTGTCCTGGAGTCCCAGGAGGGCCCTGGTCCCCGGGTGGTCC +
Preference number: 5 (lower is better)
Translates to: ALSFLTFLSNFTCQT*LSWSPRRALVPGWS
Trigger: GGACCACCCGGGGACCAGGGCCCTCCTGGGACTCCAGGACAGCCAGGTTTGACAGGTGAAGTTGGACAGAAAGGTCAGAAAGGAGAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TGGCCAACCTTGATTTCCCTTGTCACCTTTTGGCCCATTGATTCCTaGGAACCCTGGCGGCCCCATAGGTCCCGGATGCCCTGGCAGGCC +
Preference number: 5 (lower is better)
Translates to: WPTLISLVTFWPIDS*EPWRPHRSRMPWQA
Trigger: GGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp AACCCTCTTGGACCAGGTGGTCCAAAGGGTCCTGTCTCTCCTTTCTaGCCAGGAGCACCATCGAACCCAGGGACACCTGGAGGTCCAGGC +
Preference number: 5 (lower is better)
Translates to: NPLGPGGPKGPVSPF*PGAPSNPGTPGGPG
Trigger: GCCTGGACCTCCAGGTGTCCCTGGGTTCGATGGTGCTCCTGGCCAGAAAGGAGAGACAGGACCCTTTGGACCACCTGGTCCAAGAGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 90 bp TGTTGTCTGACTATGCCTGGTCACAAGGAAGCCATGGTCCACAGATaGGGTACCTGGGGGACCCATGGATCCTGGCAGCCCATCGGGGCC +
Preference number: 5 (lower is better)
Translates to: CCLTMPGHKEAMVHR*GTWGTHGSWQPIGA
Trigger: GGCCCCGATGGGCTGCCAGGATCCATGGGTCCCCCAGGTACCCCATCTGTGGACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGAGAGCGCCTCACGCCCCTAGCACCTTTGGGTTTCTTATGGAGTTCTCGCCCCGGGACCGCTGACCCCTaGCTCTCCCTTGTCACCTTT +
Preference number: 5 (lower is better)
Translates to: GERLTPLAPLGFLWSSRPGTADP*LSLVTF
Trigger: AAAGGTGACAAGGGAGAGCAAGGGGTCAGCGGTCCC...GGGGCGAGAACTCCATAAGAAACCCAAAGGTGCTAGGGGCGTGAGGCGCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGGAAGCCTCGGTCACCTaGTGGCCCTGGGAAGCCAGG +
Preference number: 5 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQEASVT*WPWEAR
Trigger: CCTGGCTTCCCAGGGCCACAAGGTGACCGAGGCTTC...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 90 bp CAAGGCCCTGGTCTCCCTTGTCACCAGGCCGTCCCGGAATCCCAATaGCAGGTAGACCTGACTGCCCTTTCTCTCCTTTGGCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: QGPGLPCHQAVPESQ*QVDLTALSLLWLPS
Trigger: AGAAGGGAGCCAAAGGAGAGAAAGGGCAGTCAGGTCTACCTGGCATTGGGATTCCGGGACGGCCTGGTGACAAGGGAGACCAGGGCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TTGATTTCCCTTGTCACCTTTTGGCCCATTGATTCCTGGGAACCCTaGCGGCCCCATAGGTCCCGGATGCCCTGGCAGGCCAGGTTGACC +
Preference number: 5 (lower is better)
Translates to: LISLVTFWPIDSWEP*RPHRSRMPWQARLT
Trigger: GGTCAACCTGGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp ACTGAGCCTGTCACACCTTGCTGTCCTTTTGGACCTGGTGGTCCCTaGAGTCCTTTAAGACCAGGGGGACCCTCAGGACCAGGGAGCCCT +
Preference number: 5 (lower is better)
Translates to: TEPVTPCCPFGPGGP*SPLRPGGPSGPGSP
Trigger: AGGGCTCCCTGGTCCTGAGGGTCCCCCTGGTCTTAAAGGACTCCAGGGACCACCAGGTCCAAAAGGACAGCAAGGTGTGACAGGCTCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS TCA 90 bp GGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCCTGGCCAACCTTaGTTTCCCTTGTCACCTTTTGGCCCATTGATTCCTGGGAACCCT +
Preference number: 5 (lower is better)
Translates to: GSPLGPGTPGAPGQP*FPLSPFGPLIPGNP
Trigger: AGGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS TCA 90 bp GAAATCCTGGAACTCCGGGCAGTCCCATATCTCCCTTTGAACCTGTaGTCCCTGGAGAGCCGCCAATGCCCGGCATGCCTTGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: EILELRAVPYLPLNL*SLESRQCPACLGIL
Trigger: CAGGATTCCAAGGCATGCCGGGCATTGGCGGCTCTCCAGGGATCACAGGTTCAAAGGGAGATATGGGACTGCCCGGAGTTCCAGGATTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS TCA 90 bp CTGACCTTGAAATCCTGGAACTCCGGGCAGTCCCATATCTCCCTTTaGACCTGTGATCCCTGGAGAGCCGCCAATGCCCGGCATGCCTTG +
Preference number: 5 (lower is better)
Translates to: LTLKSWNSGQSHISL*TCDPWRAANARHAL
Trigger: CAAGGCATGCCGGGCATTGGCGGCTCTCCAGGGATCACAGGTTCAAAGGGAGATATGGGACTGCCCGGAGTTCCAGGATTTCAAGGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 90 bp GCATCACCCTTTTGTCCTGGTGGTCCATGTGGCCCCTCAGGTCCTTaGATCCCGGGAAATCCAATGACACCTTGCAACCCTGGCAAGCCT +
Preference number: 5 (lower is better)
Translates to: ASPFCPGGPCGPSGP*IPGNPMTPCNPGKP
Trigger: AGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCACATGGACCACCAGGACAAAAGGGTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 90 bp TGTTCCAGGGAAACCTTTAGGGCCGGGCTCTCCTCTCAACCCTGGTaGTCCTGGGTAGCCTCGATCTCCTTTCTCTCCCAAAGGCATGGT +
Preference number: 5 (lower is better)
Translates to: CSRETFRAGLSSQPW*SWVASISFLSQRHG
Trigger: ACCATGCCTTTGGGAGAGAAAGGAGATCGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAGCCCGGCCCTAAAGGTTTCCCTGGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp AGGGAAACCTTTAGGGCCGGGCTCTCCTCTCAACCCTGGTGCTCCTaGGTAGCCTCGATCTCCTTTCTCTCCCAAAGGCATGGTGCCTAT +
Preference number: 5 (lower is better)
Translates to: RETFRAGLSSQPWCS*VASISFLSQRHGAY
Trigger: ATAGGCACCATGCCTTTGGGAGAGAAAGGAGATCGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAGCCCGGCCCTAAAGGTTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TGGTGTTCCAGGGAAACCTTTAGGGCCGGGCTCTCCTCTCAACCCTaGTGCTCCTGGGTAGCCTCGATCTCCTTTCTCTCCCAAAGGCAT +
Preference number: 5 (lower is better)
Translates to: WCSRETFRAGLSSQP*CSWVASISFLSQRH
Trigger: ATGCCTTTGGGAGAGAAAGGAGATCGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAGCCCGGCCCTAAAGGTTTCCCTGGAACACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GATGCTACCCTTCTCTCCAGGTGTACCGGGAATGCCTGGAAGGCCTaGTTGCCCTTTGAGTCCTGGAAGCCCAATGCCAGGTTCTCCCTT +
Preference number: 5 (lower is better)
Translates to: DATLLSRCTGNAWKA*LPFESWKPNARFSL
Trigger: AAGGGAGAACCTGGCATTGGGCTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGGCATTCCCGGTACACCTGGAGAGAAGGGTAGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGGCCCCTCAGGTCCTaGCATCCCGGGAAATCCAAT +
Preference number: 5 (lower is better)
Translates to: ERSWEVACVCSGVKCLPGWPLRS*HPGKSN
Trigger: ATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCA...TCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GCGAACCTGGCAAGCCCATTCCTCCAACTGATCCTTTGGGTCCAGGGAGTCCAGTCACCTTTATCACCTTaGAAGCCAGGGTCGCCCCTG +
Preference number: 5 (lower is better)
Translates to: ANLASPFLQLILWVQGVQSPLSP*KPGSPL
Trigger: CAGGGGCGACCCTGGCTTCAAAGGTGATAAAGGTGA...CTGGACTCCCTGGACCCAAAGGATCAGTTGGAGGAATGGGCTTGCCAGGTTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS GCA 90 bp TGTGGCCCCTCAGGTCCTTGCATCCCGGGAAATCCAATGACACCTTaGAACCCTGGCAAGCCTCTTTCTCCCTTTTGTCCCTTCACGCCA +
Preference number: 5 (lower is better)
Translates to: CGPSGPCIPGNPMTP*NPGKPLSPFCPFTP
Trigger: TGGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 90 bp GGCAGCTGCCAGCCGTACCCAAGTCCTGCCCGTGGGCACGCTCGTTaGCTTGGACATAGAGCAGAGAGTATCCATGGTAAAGAATTTTGG +
Preference number: 5 (lower is better)
Translates to: GSCQPYPSPARGHAR*LGHRAESIHGKEFW
Trigger: CCAAAATTCTTTACCATGGATACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGCTGGCAGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 90 bp TTGGAATCCTGGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCCTaGCCAACCTTGATTTCCCTTGTCACCTTTTGGCCCATTGATTCC +
Preference number: 5 (lower is better)
Translates to: LESWVSLRAWNPRSS*PTLISLVTFWPIDS
Trigger: GGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCCAGGATTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp ACTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACATGGCCCCTCAGGTCCTaGCATCCCGGGAAATCCAAT +
Preference number: 5 (lower is better)
Translates to: TPRRAEARSARHRAHYQTWPLRS*HPGKSN
Trigger: ATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCA...TGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGACCTGGAGGGCCTGGTaGGCCTGGTGTTCCAGGGAA +
Preference number: 5 (lower is better)
Translates to: QQTEANEAGCVSYANPYKTWRAW*AWCSRE
Trigger: TTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGGT...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCTGGACCTGCTGGGCCTaGAACTCCAGGAGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: YWIRSAIWYVPLWKALRCWTCWA*NSRRPW
Trigger: CCAGGGCCTCCTGGAGTTCAAGGCCCAGCAGGTCCA...GCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGCCTGCCAGGATGCAGTCACCTTTATCACCTTaGAAGCCAGGGTCGCCCCTG +
Preference number: 5 (lower is better)
Translates to: ELGSCLCVLRCEMPARMQSPLSP*KPGSPL
Trigger: CAGGGGCGACCCTGGCTTCAAAGGTGATAAAGGTGA...CTGCATCCTGGCAGGCATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp ATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCAGGGCCGGGTACACCTaGGTCTCCCTGGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: IRSAIWYVPLWKALRCLSRAGYT*VSLVSF
Trigger: AAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCCT...GGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS TCA 90 bp GTGGATGGCGTGGGCTTCCATCACGAAGGAATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCACTGCGGAATCTGAATGGTCTGACT +
Preference number: 5 (lower is better)
Translates to: VDGVGFHHEGIADPQ*GPTVRALRNLNGLT
Trigger: AGTCAGACCATTCAGATTCCGCAGTGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTATTCCTTCGTGATGGAAGCCCACGCCATCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS-3UTR CAA 90 bp GCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACCATGTTACCTGGAGGGCCATCTaGGCCAGGAATACCAGGAAG +
Preference number: 5 (lower is better)
Translates to: AEQKQEAPGTGLIIRHHVTWRAI*ARNTRK
Trigger: CTTCCTGGTATTCCTGGCCAAGATGGCCCTCCAGGT...AACATGGTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGGCCAGGTTCTCCCTTTaGACCTTGAGGTCCTGGGTT +
Preference number: 5 (lower is better)
Translates to: VTAREELGSCLCVLRCEMARFSL*TLRSWV
Trigger: AACCCAGGACCTCAAGGTCAAAAGGGAGAACCTGGC...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACGAGGCCAGGAAGTCCTaGAGAGCCTTTATCGCCTTT +
Preference number: 5 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHEARKS*RAFIAF
Trigger: AAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTC...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGCCCATCCTTCCCAGGTACTCCTGGTGTTCCAGGGTCTCCTCGGGAACCTTTAGAGGCCAGGAAGTCCTaGAGAGCCTTTATCGCCTTT +
Preference number: 5 (lower is better)
Translates to: CPSFPGTPGVPGSPREPLEARKS*RAFIAF
Trigger: AAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTC...TAAAGGTTCCCGAGGAGACCCTGGAACACCAGGAGTACCTGGGAAGGATGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209661.2
CDS-3UTR CAA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGAGCCTTTGTCTCCTTaGGAGCCAGGGAAGCCGGGG +
Preference number: 5 (lower is better)
Translates to: EANEAGCVSYANPYKALYEPLSP*EPGKPG
Trigger: CCCCGGCTTCCCTGGCTCCAAAGGAGACAAAGGCTC...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGAGGGCCGGGTACACCTaGGTCTCCCTGGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: QQTEANEAGCVSYANPYKRAGYT*VSLVSF
Trigger: AAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCCT...CTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACGATGGCGTGGGCTTCTaGAACATCTCGCTTCTCTCT +
Preference number: 5 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHDGVGF*NISLLS
Trigger: AGAGAGAAGCGAGATGTTCAAGAAGCCCACGCCATC...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS TCA 90 bp TGCAACCCTGGCAAGCCTCTTTCTCCCTTTTGTCCCTTCACGCCATaGCAGTCACATTTTCCACAGCCAGAGCCACCACAATCGCCCTTC +
Preference number: 5 (lower is better)
Translates to: CNPGKPLSPFCPFTP*QSHFPQPEPPQSPF
Trigger: GAAGGGCGATTGTGGTGGCTCTGGCTGTGGAAAATGTGACTGTCATGGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TCCCCGAGGCCCTTGCTTGCCAGGTTCACCTTTCTCTCCATATCCTaGTACTCCCGGAAATCCAGGTTCACCTTTCTGACCCTTTTCTCC +
Preference number: 5 (lower is better)
Translates to: SPRPLLARFTFLSIS*YSRKSRFTFLTLFS
Trigger: GGAGAAAAGGGTCAGAAAGGTGAACCTGGATTTCCGGGAGTACCAGGATATGGAGAGAAAGGTGAACCTGGCAAGCAAGGGCCTCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp GGTCTCCTTTCTGTCCCTTCATGCTCCCCATGTCCACATGCTCCATaGATCCTGGCATGCCAGGAAGCCCAACGTCACCTTTATCACCTT +
Preference number: 5 (lower is better)
Translates to: GLLSVPSCSPCPHAP*ILACQEAQRHLYHL
Trigger: AAGGTGATAAAGGTGACGTTGGGCTTCCTGGCATGCCAGGATCCATGGAGCATGTGGACATGGGGAGCATGAAGGGACAGAAAGGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTGTCACCTTTTGGTCCTaGGAAGCTGGAGCCCATCTG +
Preference number: 5 (lower is better)
Translates to: SFSKQRPTKRGVLVTRIPVTFWS*EAGAHL
Trigger: CAGATGGGCTCCAGCTTCCAAGGACCAAAAGGTGAC...AGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGACTCCCTTGTCACCTTTaGGTCCTTGGAAGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRLPCHL*VLGSWS
Trigger: GCTCCAGCTTCCAAGGACCAAAAGGTGACAAGGGAG...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTCCACGCAGAGCAGAAGCAAGAAGCGCCAGGCACAGGGCTCATTATCAGACACAAACCTGGGTCTCCTTaGTCACCTTTGAGTCGCATG +
Preference number: 5 (lower is better)
Translates to: LHAEQKQEAPGTGLIIRHKPGSP*SPLSRM
Trigger: CATGCGACTCAAAGGTGACAAAGGAGACCCAGGTTT...GTGTCTGATAATGAGCCCTGTGCCTGGCGCTTCTTGCTTCTGCTCTGCGTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATAGGGCCGGGTACACCTaGGTCTCCCTGGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: EANEAGCVSYANPYKALYRAGYT*VSLVSF
Trigger: AAAGGAGACCAGGGAGACCAAGGTGTACCCGGCCCT...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCCTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAGCCTCTTTCTCCCTTTaGTCCCTTCACGCCATGACA +
Preference number: 5 (lower is better)
Translates to: SFSFSKQRPTKRGVLVTRASFSL*SLHAMT
Trigger: TGTCATGGCGTGAAGGGACAAAAGGGAGAAAGAGGC...TCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AATGTCACTTCAAGCATAGTGGTCCGAGTCTGCCCTCCTGCGACCTGTCCACTCAAATCCAATGACACCTaGCAACCCTGGCAAGCCTCT +
Preference number: 5 (lower is better)
Translates to: NVTSSIVVRVCPPATCPLKSNDT*QPWQAS
Trigger: AGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTT...GAGTGGACAGGTCGCAGGAGGGCAGACTCGGACCACTATGCTTGAAGTGACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGTCCAGCATCACCCTTTaGTCCTGGTGGTCCATGTGG +
Preference number: 5 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRSSITL*SWWSMW
Trigger: CCACATGGACCACCAGGACAAAAGGGTGATGCTGGA...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGCCCTCTCTCTCCCTTaGTACCGTTGCATCCTGGGA +
Preference number: 5 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMALSLP*YRCILG
Trigger: TCCCAGGATGCAACGGTACAAAGGGAGAGAGAGGGC...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTTCTCCTTCAGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATGTCACCTTTTGGTCCTaGGAAGCTGGAGCCCATCTG +
Preference number: 5 (lower is better)
Translates to: LLLQQTEANEAGCVSYANVTFWS*EAGAHL
Trigger: CAGATGGGCTCCAGCTTCCAAGGACCAAAAGGTGAC...ATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCTGAAGGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCTCCCTTGTCACCTTTaGGTCCTTGGAAGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRLPCHL*VLGSWS
Trigger: GCTCCAGCTTCCAAGGACCAAAAGGTGACAAGGGAG...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGAAGCCTCGGTCACCTaGTGGCCCTGGGAAGCCAGG +
Preference number: 5 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLEASVT*WPWEAR
Trigger: CCTGGCTTCCCAGGGCCACAAGGTGACCGAGGCTTC...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTGGGACCGCTGACCCCTaGCTCTCCCTTGTCACCTTT +
Preference number: 5 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLGTADP*LSLVTF
Trigger: AAAGGTGACAAGGGAGAGCAAGGGGTCAGCGGTCCC...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTCACAGCTCGAGAGGAGCTGGGAAGTTGCCTGTGTGTGCTCAGGTGTGAAATGGACCCTTTTCTCCTGTaGGGGCAAAGTCTCCTTTTT +
Preference number: 5 (lower is better)
Translates to: VTAREELGSCLCVLRCEMDPFLL*GQSLLF
Trigger: AAAAAGGAGACTTTGCCCCAACAGGAGAAAAGGGTC...CATTTCACACCTGAGCACACACAGGCAACTTCCCAGCTCCTCTCGAGCTGTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGACCTTTAGCCCCAGGTaGTCCAGGGAAACCAATCTC +
Preference number: 5 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRTFSPR*SRETNL
Trigger: GAGATTGGTTTCCCTGGACAACCTGGGGCTAAAGGT...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGGGCACGCTCGTTGCCTaGGACATAGAGCAGAGAGTA +
Preference number: 5 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQGTLVA*DIEQRV
Trigger: TACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCC...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTACCTGGAGGGCCTGGTaGGCCTGGTGTTCCAGGGAA +
Preference number: 5 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSTWRAW*AWCSRE
Trigger: TTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGGT...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGTGGACCTGCTGGGCCTaGAACTCCAGGAGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSEWTCWA*NSRRPW
Trigger: CCAGGGCCTCCTGGAGTTCAAGGCCCAGCAGGTCCA...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATCCTCCAACTGATCCTTaGGGTCCAGGGAGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: EAGCVSYANPYKALYGFHPPTDP*GPGSPG
Trigger: CCCTGGACTCCCTGGACCCAAAGGATCAGTTGGAGG...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGTCTTCCTGGAACACCTaGTTCACCCTTCTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: RPTKRGVLVTRIPIRHFMSSWNT*FTLLSC
Trigger: GCAGGAGAGAAGGGTGAACAAGGTGTTCCAGGAAGA...CATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CATTTGGTATGTGCCATTATGGAAAGCTCTCCGCTGCCTGTCCTTCTCCTTCAGAAGCCCTTTCTGACCTaGAAATCCTGGAACTCCGGG +
Preference number: 5 (lower is better)
Translates to: HLVCAIMESSPLPVLLLQKPFLT*KSWNSG
Trigger: CCCGGAGTTCCAGGATTTCAAGGTCAGAAAGGGCTT...CTGAAGGAGAAGGACAGGCAGCGGAGAGCTTTCCATAATGGCACATACCAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGCAAACAGAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGACAGTGGGTCATCTGTaGTCTGACTATGCCTGGTCA +
Preference number: 5 (lower is better)
Translates to: SKQRPTKRGVLVTRIPIRTVGHL*SDYAWS
Trigger: TGACCAGGCATAGTCAGACAACAGATGACCCACTGT...CCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTCTGTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 90 bp CAGAGAGTATCCATGGTAAAGAATTTTGGTCCCTGGGGGACACAGTaGGTCATCTGTTGTCTGACTATGCCTGGTCACAAGGAAGCCATG +
Preference number: 5 (lower is better)
Translates to: QRVSMVKNFGPWGTQ*VICCLTMPGHKEAM
Trigger: CATGGCTTCCTTGTGACCAGGCATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATGGATACTCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 90 bp CGTTGCCTTGGACATAGAGCAGAGAGTATCCATGGTAAAGAATTTTaGTCCCTGGGGGACACAGTGGGTCATCTGTTGTCTGACTATGCC +
Preference number: 5 (lower is better)
Translates to: RCLGHRAESIHGKEF*SLGDTVGHLLSDYA
Trigger: GGCATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATGGATACTCTCTGCTCTATGTCCAAGGCAACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGCCCTCTCTCTCCCTTaGTACCGTTGCATCCTGGGA +
Preference number: 5 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLALSLP*YRCILG
Trigger: TCCCAGGATGCAACGGTACAAAGGGAGAGAGAGGGC...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACCCCGAGGCCCTTGCTaGCCAGGTTCACCTTTCTCT +
Preference number: 5 (lower is better)
Translates to: VTRIPIRHFMVFIVDSEVPRGPC*PGSPFS
Trigger: AGAGAAAGGTGAACCTGGCAAGCAAGGGCCTCGGGG...TACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTCTCCATCTCTTCCACTaGGTCCTGGCAATGACACGC +
Preference number: 5 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLLHLFH*VLAMTR
Trigger: GCGTGTCATTGCCAGGACCAAGTGGAAGAGATGGAG...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATAACTCCACAATGCCATTaGTGTGGCCTGGCTGCCCAG +
Preference number: 5 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCITPQCH*CGLAAQ
Trigger: CTGGGCAGCCAGGCCACACAAATGGCATTGTGGAGT...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTCCCGGGTGGTCCAGGTaGACACTCCACAATGCCATT +
Preference number: 5 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSPGWSR*TLHNAI
Trigger: AATGGCATTGTGGAGTGTCAACCTGGACCACCCGGG...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACGCCTGGAAGGCCTGGTaGCCCTTTGAGTCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDAWKAW*PFESWK
Trigger: CTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGGC...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCTCACCTTTATCACCTTaGAAGCCAGGGTCGCCCCTG +
Preference number: 5 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTSPLSP*KPGSPL
Trigger: CAGGGGCGACCCTGGCTTCAAAGGTGATAAAGGTGA...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGAGGGTGGGTACTTTTAGTGAAATGTCACTTCAAGCATAGTGGTCCGAGTCTGAACCCTTGCTCGCCTTaGACTCCAGGAATTCCAGGA +
Preference number: 5 (lower is better)
Translates to: GGWVLLVKCHFKHSGPSLNPCSP*TPGIPG
Trigger: TCCTGGAATTCCTGGAGTCAAAGGCGAGCAAGGGTT...CAGACTCGGACCACTATGCTTGAAGTGACATTTCACTAAAAGTACCCACCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAATGCCCGGCATGCCTaGGAATCCTGGGTCTCCCTT +
Preference number: 5 (lower is better)
Translates to: EAGCVSYANPYKALYGFHNARHA*ESWVSL
Trigger: AAGGGAGACCCAGGATTCCAAGGCATGCCGGGCATT...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 90 bp TTGGACATAGAGCAGAGAGTATCCATGGTAAAGAATTTTGGTCCCTaGGGGACACAGTGGGTCATCTGTTGTCTGACTATGCCTGGTCAC +
Preference number: 5 (lower is better)
Translates to: LDIEQRVSMVKNFGP*GTQWVICCLTMPGH
Trigger: GTGACCAGGCATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATGGATACTCTCTGCTCTATGTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGAGTTCCATGTAGAAAGTGGAAGAAACCAGTTCCCTTGACTGTTCTCTGCATATCCAGCATCACCCTTTaGTCCTGGTGGTCCATGTGG +
Preference number: 5 (lower is better)
Translates to: GVPCRKWKKPVPLTVLCISSITL*SWWSMW
Trigger: CCACATGGACCACCAGGACAAAAGGGTGATGCTGGA...TATGCAGAGAACAGTCAAGGGAACTGGTTTCTTCCACTTTCTACATGGAACTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGCCCCGAGGCCCTTGCTaGCCAGGTTCACCTTTCTCT +
Preference number: 5 (lower is better)
Translates to: CVSYANPYKALYGFHSGQPRGPC*PGSPFS
Trigger: AGAGAAAGGTGAACCTGGCAAGCAAGGGCCTCGGGG...CTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATCTCCATCTCTTCCACTaGGTCCTGGCAATGACACGC +
Preference number: 5 (lower is better)
Translates to: EAGCVSYANPYKALYGFHLHLFH*VLAMTR
Trigger: GCGTGTCATTGCCAGGACCAAGTGGAAGAGATGGAG...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTCCTCTGCCAGGTTCTCCCTTTaGACCTTGAGGTCCTGGGTT +
Preference number: 5 (lower is better)
Translates to: SDTMFRNGFGFGYLYTSSARFSL*TLRSWV
Trigger: AACCCAGGACCTCAAGGTCAAAAGGGAGAACCTGGC...AGAGGAGGTGTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCGCCTGGAAGGCCTGGTaGCCCTTTGAGTCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: IHLLLDQERHLVCAIMESAWKAW*PFESWK
Trigger: CTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGGC...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp ATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCCCTCCAACTGATCCTTaGGGTCCAGGGAGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: IHLLLDQERHLVCAIMESPPTDP*GPGSPG
Trigger: CCCTGGACTCCCTGGACCCAAAGGATCAGTTGGAGG...GCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCTCTTCCTGGAACACCTaGTTCACCCTTCTCTCCTGC +
Preference number: 5 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTSSWNT*FTLLSC
Trigger: GCAGGAGAGAAGGGTGAACAAGGTGTTCCAGGAAGA...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAAGCTCTCCGGCACGCTCGTTGCCTaGGACATAGAGCAGAGAGTA +
Preference number: 5 (lower is better)
Translates to: SFIGSGAPFGMCHYGKLSGTLVA*DIEQRV
Trigger: TACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCC...GGAGAGCTTTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATGGCACGCTCGTTGCCTaGGACATAGAGCAGAGAGTA +
Preference number: 5 (lower is better)
Translates to: EAGCVSYANPYKALYGFHGTLVA*DIEQRV
Trigger: TACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCC...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGACCTGGAGGGCCATCTaGGCCAGGAATACCAGGAAG +
Preference number: 5 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSETWRAI*ARNTRK
Trigger: CTTCCTGGTATTCCTGGCCAAGATGGCCCTCCAGGT...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGCCCGGGTGGTCCAGGTaGACACTCCACAATGCCATT +
Preference number: 5 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSEPGWSR*TLHNAI
Trigger: AATGGCATTGTGGAGTGTCAACCTGGACCACCCGGG...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAAACCTGGGTCTCCTTaGTCACCTTTGAGTCGCATG +
Preference number: 5 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLKPGSP*SPLSRM
Trigger: CATGCGACTCAAAGGTGACAAAGGAGACCCAGGTTT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CATCTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAAGGACCCATGAACCCTaGCTCGCCTTTGACTCCAGG +
Preference number: 5 (lower is better)
Translates to: HLTFGPSLFHRKAMTSTKRTHEP*LAFDSR
Trigger: CCTGGAGTCAAAGGCGAGCAAGGGTTCATGGGTCCT...TTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAAGCCCTTTCTGACCTaGAAATCCTGGAACTCCGGG +
Preference number: 5 (lower is better)
Translates to: EAGCVSYANPYKALYGFHKPFLT*KSWNSG
Trigger: CCCGGAGTTCCAGGATTTCAAGGTCAGAAAGGGCTT...ATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp ACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCACAGTGGGTCATCTGTaGTCTGACTATGCCTGGTCA +
Preference number: 5 (lower is better)
Translates to: TKRGVLVTRIPIRHFMVFTVGHL*SDYAWS
Trigger: TGACCAGGCATAGTCAGACAACAGATGACCCACTGT...GAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCCTGCAGACGTTGTTGATGTaGCAGAAGAGAAAGGGCATG +
Preference number: 5 (lower is better)
Translates to: EFEESWCFTFSGLMLVTLQTLLM*QKRKGM
Trigger: CATGCCCTTTCTCTTCTGCAACATCAACAACGTCTG...CAGGGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp AGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGGTAACCGACCCTTTTCTCCTGTaGGGGCAAAGTCTCCTTTTT +
Preference number: 5 (lower is better)
Translates to: SEFEESWCFTFSGLMLVTDPFLL*GQSLLF
Trigger: AAAAAGGAGACTTTGCCCCAACAGGAGAAAAGGGTC...GGTTACCAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTGGATTGCAAAATGCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATACTCCACAATGCCATTaGTGTGGCCTGGCTGCCCAG +
Preference number: 5 (lower is better)
Translates to: LDCKMQFIFYWIRSAIWYTPQCH*CGLAAQ
Trigger: CTGGGCAGCCAGGCCACACAAATGGCATTGTGGAGT...ATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGCATTTTGCAATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGCTCATTATCAGACACCATGTTTAGGAATGGGTTTGGCTTTGGCTATCTATACACCTTTAGCCCCAGGTaGTCCAGGGAAACCAATCTC +
Preference number: 5 (lower is better)
Translates to: GSLSDTMFRNGFGFGYLYTFSPR*SRETNL
Trigger: GAGATTGGTTTCCCTGGACAACCTGGGGCTAAAGGT...GTATAGATAGCCAAAGCCAAACCCATTCCTAAACATGGTGTCTGATAATGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGCTCCTTTCAATCCTATaGAACCCGGAGAGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLLLSIL*NPESLW
Trigger: CCAAAGGCTCTCCGGGTTCAATAGGATTGAAAGGAG...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATCTCCTTTCAATCCTATaGAACCCGGAGAGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNLLSIL*NPESLW
Trigger: CCAAAGGCTCTCCGGGTTCAATAGGATTGAAAGGAG...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTACAGTTTCTCCAGAGACGAAAACCAAGTGCGCTTTATTTAACAACAGGCTCTAACCCTTGCTCGCCTTaGACTCCAGGAATTCCAGGA +
Preference number: 5 (lower is better)
Translates to: VQFLQRRKPSALYLTTGSNPCSP*TPGIPG
Trigger: TCCTGGAATTCCTGGAGTCAAAGGCGAGCAAGGGTT...AGAGCCTGTTGTTAAATAAAGCGCACTTGGTTTTCGTCTCTGGAGAAACTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGACAGTGGGTCATCTGTaGTCTGACTATGCCTGGTCA +
Preference number: 5 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLTVGHL*SDYAWS
Trigger: TGACCAGGCATAGTCAGACAACAGATGACCCACTGT...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GAGGCCAACGAAGCGGGGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATAAGTTGCAGACGTTGTaGATGTTGCAGAAGAGAAAG +
Preference number: 5 (lower is better)
Translates to: EANEAGCVSYANPYKALYKLQTL*MLQKRK
Trigger: CTTTCTCTTCTGCAACATCAACAACGTCTGCAACTT...ATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACCCCGCTTCGTTGGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGCCTCTTTCTCCCTTTaGTCCCTTCACGCCATGACA +
Preference number: 5 (lower is better)
Translates to: LVTRIPIRHFMVFIVDSEASFSL*SLHAMT
Trigger: TGTCATGGCGTGAAGGGACAAAAGGGAGAAAGAGGC...CTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGCCAGGAAGTCCTaGAGAGCCTTTATCGCCTTT +
Preference number: 5 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSEARKS*RAFIAF
Trigger: AAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTC...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGCTCCTGGCCAACCTaGATTTCCCTTGTCACCTTT +
Preference number: 5 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDSSWPT*ISLVTF
Trigger: AAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCT...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAAGCTCCTGGCCAACCTaGATTTCCCTTGTCACCTTT +
Preference number: 5 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKASSWPT*ISLVTF
Trigger: AAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCT...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGAGGTACACAGGCAGACGTTGTTGATGTaGCAGAAGAGAAAGGGCATG +
Preference number: 5 (lower is better)
Translates to: RIPIRHFMVFIVDSEVHRQTLLM*QKRKGM
Trigger: CATGCCCTTTCTCTTCTGCAACATCAACAACGTCTG...CCTGTGTACCTCACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GGTGTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACCAGACGTTGTTGATGTaGCAGAAGAGAAAGGGCATG +
Preference number: 5 (lower is better)
Translates to: GVLVTRIPIRHFMVFIVDQTLLM*QKRKGM
Trigger: CATGCCCTTTCTCTTCTGCAACATCAACAACGTCTG...GTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp CTAACCTTTGGACCATCTTTATTCCACAGGAAAGCCATGACTTCCACAAAAGCAGCGAAGTTGCAGACGTaGTTGATGTTGCAGAAGAGA +
Preference number: 5 (lower is better)
Translates to: LTFGPSLFHRKAMTSTKAAKLQT*LMLQKR
Trigger: TCTCTTCTGCAACATCAACAACGTCTGCAACTTCGC...TGCTTTTGTGGAAGTCATGGCTTTCCTGTGGAATAAAGATGGTCCAAAGGTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTCTTATGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATAAGTTGCAGACGTTGTaGATGTTGCAGAAGAGAAAG +
Preference number: 5 (lower is better)
Translates to: FLMEFSPQTSVHWIAKCNKLQTL*MLQKRK
Trigger: CTTTCTCTTCTGCAACATCAACAACGTCTGCAACTT...ATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCATAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TTTAGGAGTGAGTTTGAGGAAAGCTGGTGTTTCACATTCAGTGGCCTGATGTTGAAGTTGCAGACGTTGTaGATGTTGCAGAAGAGAAAG +
Preference number: 5 (lower is better)
Translates to: FRSEFEESWCFTFSGLMLKLQTL*MLQKRK
Trigger: CTTTCTCTTCTGCAACATCAACAACGTCTGCAACTT...CAACATCAGGCCACTGAATGTGAAACACCAGCTTTCCTCAAACTCACTCCTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GCAATTCATCTTTTATTGGATCAGGAGCGCCATTTGGTATGTGCCATTATGGAAGCGAAGTTGCAGACGTaGTTGATGTTGCAGAAGAGA +
Preference number: 5 (lower is better)
Translates to: AIHLLLDQERHLVCAIMEAKLQT*LMLQKR
Trigger: TCTCTTCTGCAACATCAACAACGTCTGCAACTTCGC...TTCCATAATGGCACATACCAAATGGCGCTCCTGATCCAATAAAAGATGAATTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp GTGTTAGTTACGCGAATCCCTATAAGGCACTTTATGGTTTTCATAGTGGACAGTGCGAAGTTGCAGACGTaGTTGATGTTGCAGAAGAGA +
Preference number: 5 (lower is better)
Translates to: VLVTRIPIRHFMVFIVDSAKLQT*LMLQKR
Trigger: TCTCTTCTGCAACATCAACAACGTCTGCAACTTCGC...ACTGTCCACTATGAAAACCATAAAGTGCCTTATAGGGATTCGCGTAACTAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS-3UTR CAA 90 bp TGGAGTTCTCGCCCCAGACATCAGTGCACTGGATTGCAAAATGCAATTCATCTTAAAAGCTGTAAGCATTaGCGTAGTAATTGCACGTTC +
Preference number: 5 (lower is better)
Translates to: WSSRPRHQCTGLQNAIHLKSCKH*RSNCTF
Trigger: GAACGTGCAATTACTACGCAAATGCTTACAGCTTTT...AAGATGAATTGCATTTTGCAATCCAGTGCACTGATGTCTGGGGCGAGAACTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033898.10
CDS CAA 90 bp GAACCCTGGCGGCCCCATAGGTCCCGGATGCCCTGGCAGGCCAGGTaGACCCTGAGGTCCTCGGTCTCCTTTGGGCCCCTCCACAGGGTG +
Preference number: 6 (lower is better)
Translates to: EPWRPHRSRMPWQAR*TLRSSVSFGPLHRV
Trigger: CACCCTGTGGAGGGGCCCAAAGGAGACCGAGGACCTCAGGGTCAACCTGGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp CACCCTTCTCTCCTGCCGACCCCGGGATTCCATCGCTaGCCGGCTCTCCCTTCTGGCCAGCTGGGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: HPSLLPTPGFHR*PALPSGQLGLW
Trigger: CCACAGGCCCAGCTGGCCAGAAGGGAGAGCCGGGCAGCGATGGAATCCCGGGGTCGGCAGGAGAGAAGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TGGTCCTTGCCCTCCGGGAGGGCCCATAGCTCCGGGTaGCCCTATTCCTGGGACCCCTGGTGGACCTGCTGG +
Preference number: 6 (lower is better)
Translates to: WSLPSGRAHSSG*PYSWDPWWTCW
Trigger: CCAGCAGGTCCACCAGGGGTCCCAGGAATAGGGCCACCCGGAGCTATGGGCCCTCCCGGAGGGCAAGGACCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TGGGAACCCTGGCGGCCCCATAGGTCCCGGATGCCCTaGCAGGCCAGGTTGACCCTGAGGTCCTCGGTCTCC +
Preference number: 6 (lower is better)
Translates to: WEPWRPHRSRMP*QARLTLRSSVS
Trigger: GGAGACCGAGGACCTCAGGGTCAACCTGGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TGGGGGACCCATGGATCCTGGCAGCCCATCGGGGCCTaGTGGGCCAGGAAACCCTCTTGGACCAGGTGGTCC +
Preference number: 6 (lower is better)
Translates to: WGTHGSWQPIGA*WARKPSWTRWS
Trigger: GGACCACCTGGTCCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTGCCAGGATCCATGGGTCCCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS GCA 72 bp CAGAGCCACCACAATCGCCCTTCGCAGCTGCTCGGCTaGGCTCCTCGTGGAGCAGAAGGGCGGCGAAGAGCA +
Preference number: 6 (lower is better)
Translates to: QSHHNRPSQLLG*APRGAEGRRRA
Trigger: TGCTCTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGAAGGGCGATTGTGGTGGCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp CAATCGCCCTTCGCAGCTGCTCGGCTGCGCTCCTCGTaGAGCAGAAGGGCGGCGAAGAGCAGCAGAAGCCAG +
Preference number: 6 (lower is better)
Translates to: QSPFAAARLRSS*SRRAAKSSRSQ
Trigger: CTGGCTTCTGCTGCTCTTCGCCGCCCTTCTGCTCCACGAGGAGCGCAGCCGAGCAGCTGCGAAGGGCGATTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TGGCTGGCCCACAGCACCTTTCTCTCCCGGGATGCCTaGACGTCCTGGGGTTCCTGGGAAGCCTCGGTCACC +
Preference number: 6 (lower is better)
Translates to: WLAHSTFLSRDA*TSWGSWEASVT
Trigger: GGTGACCGAGGCTTCCCAGGAACCCCAGGACGTCCAGGCATCCCGGGAGAGAAAGGTGCTGTGGGCCAGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TGGAGAGCCGCCAATGCCCGGCATGCCTTGGAATCCTaGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCC +
Preference number: 6 (lower is better)
Translates to: WRAANARHALES*VSLRAWNPRSS
Trigger: GGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCCAGGATTCCAAGGCATGCCGGGCATTGGCGGCTCTCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp GGGCTGCCTGGGAAGCCAGCAAGGCCCTGGTCTCCCTaGTCACCAGGCCGTCCCGGAATCCCAATGCCAGGT +
Preference number: 6 (lower is better)
Translates to: GLPGKPARPWSP*SPGRPGIPMPG
Trigger: ACCTGGCATTGGGATTCCGGGACGGCCTGGTGACAAGGGAGACCAGGGCCTTGCTGGCTTCCCAGGCAGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS TCA 72 bp AGGACCCACGGGTCCCTGGAGTCCTGGCAACCCTGGTaGGCCCGGCATCCCGGGGATACCAGGAAATCCTCT +
Preference number: 6 (lower is better)
Translates to: RTHGSLESWQPW*ARHPGDTRKSS
Trigger: AGAGGATTTCCTGGTATCCCCGGGATGCCGGGCTCACCAGGGTTGCCAGGACTCCAGGGACCCGTGGGTCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp GGGACCCATGGATCCTGGCAGCCCATCGGGGCCTGGTaGGCCAGGAAACCCTCTTGGACCAGGTGGTCCAAA +
Preference number: 6 (lower is better)
Translates to: GTHGSWQPIGAW*ARKPSWTRWSK
Trigger: TTTGGACCACCTGGTCCAAGAGGGTTTCCTGGCCCACCAGGCCCCGATGGGCTGCCAGGATCCATGGGTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CAA 72 bp TCTGCCGGGCAGGCCTCGGTCACCTTTAGCCCCAGGTaGTCCAGGGAAACCAATCTCTCCCGGAGGCCCCTG +
Preference number: 6 (lower is better)
Translates to: SAGQASVTFSPR*SRETNLSRRPL
Trigger: CAGGGGCCTCCGGGAGAGATTGGTTTCCCTGGACAACCTGGGGCTAAAGGTGACCGAGGCCTGCCCGGCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp TTCTCACCGGGGCTGCCTGGGAAGCCAGCAAGGCCCTGGTCTCCCTaGTCACCAGGCCGTCCCGGAATCCCAATGCCAGGTAGACCTGAC +
Preference number: 6 (lower is better)
Translates to: FSPGLPGKPARPWSP*SPGRPGIPMPGRPD
Trigger: GTCAGGTCTACCTGGCATTGGGATTCCGGGACGGCCTGGTGACAAGGGAGACCAGGGCCTTGCTGGCTTCCCAGGCAGCCCCGGTGAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp TTAATTCCAGGTGGACCTGATGACCCTGGTGGTCCTTaGCCTCCGGGAGGGCCCATAGCTCCGGGTGGCCCT +
Preference number: 6 (lower is better)
Translates to: LIPGGPDDPGGP*PPGGPIAPGGP
Trigger: AGGGCCACCCGGAGCTATGGGCCCTCCCGGAGGGCAAGGACCACCAGGGTCATCAGGTCCACCTGGAATTAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp CTTGTCACCTTTTGGCCCATTGATTCCTGGGAACCCTaGCGGCCCCATAGGTCCCGGATGCCCTGGCAGGCC +
Preference number: 6 (lower is better)
Translates to: LVTFWPIDSWEP*RPHRSRMPWQA
Trigger: GGCCTGCCAGGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp GCCAGGGAAGCCGGGGAAGCCTCTTCCTGGAACACCTaGTTCACCCTTCTCTCCTGCCGACCCCGGGATTCC +
Preference number: 6 (lower is better)
Translates to: AREAGEASSWNT*FTLLSCRPRDS
Trigger: GGAATCCCGGGGTCGGCAGGAGAGAAGGGTGAACAAGGTGTTCCAGGAAGAGGCTTCCCCGGCTTCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp TGGAGCACCAGCCTGGCCTGGAGTAGGGAAACCTGGAGGGCCTGGTaGGCCTGGTGTTCCAGGGAAACCTTTAGGGCCGGGCTCTCCTCT +
Preference number: 6 (lower is better)
Translates to: WSTSLAWSRETWRAW*AWCSRETFRAGLSS
Trigger: AGAGGAGAGCCCGGCCCTAAAGGTTTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGGTTTCCCTACTCCAGGCCAGGCTGGTGCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp GGCCTGGGAGACCTGGGTACCCGGAATCGCCAGGAATaGCCGGGCTCCCCCTTTCTCCTTTTTCACCGTCTT +
Preference number: 6 (lower is better)
Translates to: GLGDLGTRNRQE*PGSPFLLFHRL
Trigger: AAGACGGTGAAAAAGGAGAAAGGGGGAGCCCGGGCATTCCTGGCGATTCCGGGTACCCAGGTCTCCCAGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp TCAACCCCTGTTCTCCTGGAACGCCGGGTCCCCCGATaGTACCCTTCTCTCCAGGTGTACCGGGAATGCCTG +
Preference number: 6 (lower is better)
Translates to: STPVLLERRVPR*YPSLQVYRECL
Trigger: CAGGCATTCCCGGTACACCTGGAGAGAAGGGTAGCATCGGGGGACCCGGCGTTCCAGGAGAACAGGGGTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp CACTTGGCAGCGGCTGACGTGTGTTCGCAGCTCCCCTaGCTTCAAGGTGGATGGCGTGGGCTTCCATCACGA +
Preference number: 6 (lower is better)
Translates to: HLAAADVCSQLP*LQGGWRGLPSR
Trigger: TCGTGATGGAAGCCCACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACACACGTCAGCCGCTGCCAAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS CCA 72 bp ACCAGCCTGGCCTGGAGTAGGGAAACCTGGAGGGCCTaGTTGGCCTGGTGTTCCAGGGAAACCTTTAGGGCC +
Preference number: 6 (lower is better)
Translates to: TSLAWSRETWRA*LAWCSRETFRA
Trigger: GGCCCTAAAGGTTTCCCTGGAACACCAGGCCAACCAGGCCCTCCAGGTTTCCCTACTCCAGGCCAGGCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp AGGGAAACCAATCTCTCCCGGAGGCCCCTGTGGCCCTaGAGGGCCACGAAGTCCTTCTGTGTCACAGGCAAG +
Preference number: 6 (lower is better)
Translates to: RETNLSRRPLWP*RATKSFCVTGK
Trigger: CTTGCCTGTGACACAGAAGGACTTCGTGGCCCTCCAGGGCCACAGGGGCCTCCGGGAGAGATTGGTTTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TTTATCCCCTTTCTCTCCAGGCAGGCCTGGGCTTCCTaGATGGCCGATGTTCCCCGGAGAACCTCTCGGGCC +
Preference number: 6 (lower is better)
Translates to: FIPFLSRQAWAS*MADVPRRTSRA
Trigger: GGCCCGAGAGGTTCTCCGGGGAACATCGGCCATCCAGGAAGCCCAGGCCTGCCTGGAGAGAAAGGGGATAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp GATGACATCGTAGGGACCTGGAGGCCCAGGGGGACCTaGGAGACCTTTAGGGCCGGGTACACCTTGGTCTCC +
Preference number: 6 (lower is better)
Translates to: DDIVGTWRPRGT*ETFRAGYTLVS
Trigger: GGAGACCAAGGTGTACCCGGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CAA 90 bp GCCGGTGCTTCACAAACCGCACACCTGCTAATGAAGGGCCGGATGTaGTCCCCAGAGATGGGTGCCATGGACATGGGCATGGGCTCTGGC +
Preference number: 6 (lower is better)
Translates to: AGASQTAHLLMKGRM*SPEMGAMDMGMGSG
Trigger: GCCAGAGCCCATGCCCATGTCCATGGCACCCATCTCTGGGGACAACATCCGGCCCTTCATTAGCAGGTGTGCGGTTTGTGAAGCACCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS GCA 72 bp GGAGGTCCAGGCAAGCCCACTGAGCCTGTCACACCTTaGTGTCCTTTTGGACCTGGTGGTCCCTGGAGTCCT +
Preference number: 6 (lower is better)
Translates to: GGPGKPTEPVTP*CPFGPGGPWSP
Trigger: AGGACTCCAGGGACCACCAGGTCCAAAAGGACAGCAAGGTGTGACAGGCTCAGTGGGCTTGCCTGGACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 72 bp TGGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCCTaGCCAACCTTGATTTCCCTTGTCACCTTTTGGCCC +
Preference number: 6 (lower is better)
Translates to: WVSLRAWNPRSS*PTLISLVTFWP
Trigger: GGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp GAGCCCTGGTTCTCCTTTGATGACATCGTAGGGACCTaGAGGCCCAGGGGGACCTTGGAGACCTTTAGGGCC +
Preference number: 6 (lower is better)
Translates to: EPWFSFDDIVGT*RPRGTLETFRA
Trigger: GGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTCATCAAAGGAGAACCAGGGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 72 bp ACTATGCCTGGTCACAAGGAAGCCATGGTCCACAGATaGGGTACCTGGGGGACCCATGGATCCTGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: TMPGHKEAMVHR*GTWGTHGSWQP
Trigger: GGGCTGCCAGGATCCATGGGTCCCCCAGGTACCCCATCTGTGGACCATGGCTTCCTTGTGACCAGGCATAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CAA 90 bp TTCTCCTTTGATGACATCGTAGGGACCTGGAGGCCCAGGGGGACCTaGGAGACCTTTAGGGCCGGGTACACCTTGGTCTCCCTGGTCTCC +
Preference number: 6 (lower is better)
Translates to: FSFDDIVGTWRPRGT*ETFRAGYTLVSLVS
Trigger: GGAGACCAGGGAGACCAAGGTGTACCCGGCCCTAAAGGTCTCCAAGGTCCCCCTGGGCCTCCAGGTCCCTACGATGTCATCAAAGGAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS TCA 72 bp GGGAGGCCTGACTGTCCTGTGAGGCCAGGAAGTCCTTaGGAGCCTTTATCGCCTTTGGGGCCAGGCATATCC +
Preference number: 6 (lower is better)
Translates to: GRPDCPVRPGSP*EPLSPLGPGIS
Trigger: GGATATGCCTGGCCCCAAAGGCGATAAAGGCTCTCAAGGACTTCCTGGCCTCACAGGACAGTCAGGCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209661.2
ENSMUST00000209735.2
CDS TCA 72 bp GAACTCCGGGCAGTCCCATATCTCCCTTTGAACCTGTaGTCCCTGGAGAGCCGCCAATGCCCGGCATGCCTT +
Preference number: 6 (lower is better)
Translates to: ELRAVPYLPLNL*SLESRQCPACL
Trigger: AAGGCATGCCGGGCATTGGCGGCTCTCCAGGGATCACAGGTTCAAAGGGAGATATGGGACTGCCCGGAGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp GGTCTCCCTTGTCACCAGGCCGTCCCGGAATCCCAATaGCAGGTAGACCTGACTGCCCTTTCTCTCCTTTGG +
Preference number: 6 (lower is better)
Translates to: GLPCHQAVPESQ*QVDLTALSLLW
Trigger: CCAAAGGAGAGAAAGGGCAGTCAGGTCTACCTGGCATTGGGATTCCGGGACGGCCTGGTGACAAGGGAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp AGGGAAACCTTTAGGGCCGGGCTCTCCTCTCAACCCTaGTGCTCCTGGGTAGCCTCGATCTCCTTTCTCTCC +
Preference number: 6 (lower is better)
Translates to: RETFRAGLSSQP*CSWVASISFLS
Trigger: GGAGAGAAAGGAGATCGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAGCCCGGCCCTAAAGGTTTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp GACGTGTGTTCGCAGCTCCCCTGCCTTCAAGGTGGATaGCGTGGGCTTCCATCACGAAGGAATAGCCGATCC +
Preference number: 6 (lower is better)
Translates to: DVCSQLPCLQGG*RGLPSRRNSRS
Trigger: GGATCGGCTATTCCTTCGTGATGGAAGCCCACGCCATCCACCTTGAAGGCAGGGGAGCTGCGAACACACGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS CAA 90 bp TGGGTCTCCCTTAGGGCCTGGAACCCCCGGAGCTCCTGGCCAACCTaGATTTCCCTTGTCACCTTTTGGCCCATTGATTCCTGGGAACCC +
Preference number: 6 (lower is better)
Translates to: WVSLRAWNPRSSWPT*ISLVTFWPIDSWEP
Trigger: GGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAGGGAGACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp AGCATCACCCTTTTGTCCTGGTGGTCCATGTGGCCCCTCAGGTCCTaGCATCCCGGGAAATCCAATGACACCTTGCAACCCTGGCAAGCC +
Preference number: 6 (lower is better)
Translates to: SITLLSWWSMWPLRS*HPGKSNDTLQPWQA
Trigger: GGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCACATGGACCACCAGGACAAAAGGGTGATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp CGCACACCTGTTTTCCAAGGAAAGCTGCTAATGAAGGGCCGGATGTaGTCCCCAGAGATGGGTGCCATGGACATGGGCATGGGCTCTGGC +
Preference number: 6 (lower is better)
Translates to: RTPVFQGKLLMKGRM*SPEMGAMDMGMGSG
Trigger: GCCAGAGCCCATGCCCATGTCCATGGCACCCATCTCTGGGGACAACATCCGGCCCTTCATTAGCAGCTTTCCTTGGAAAACAGGTGTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209735.2
CDS GCA 72 bp GAAACCTTTAGGGCCGGGCTCTCCTCTCAACCCTGGTaGTCCTGGGTAGCCTCGATCTCCTTTCTCTCCCAA +
Preference number: 6 (lower is better)
Translates to: ETFRAGLSSQPW*SWVASISFLSQ
Trigger: TTGGGAGAGAAAGGAGATCGAGGCTACCCAGGAGCACCAGGGTTGAGAGGAGAGCCCGGCCCTAAAGGTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS GCA 72 bp TCTCCAGGTGTACCGGGAATGCCTGGAAGGCCTGGTTaGCCTTTGAGTCCTGGAAGCCCAATGCCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: SPGVPGMPGRPG*PLSPGSPMPGS
Trigger: AGAACCTGGCATTGGGCTTCCAGGACTCAAAGGGCAACCAGGCCTTCCAGGCATTCCCGGTACACCTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TTGATTTCCCTTGTCACCTTTTGGCCCATTGATTCCTaGGAACCCTGGCGGCCCCATAGGTCCCGGATGCCC +
Preference number: 6 (lower is better)
Translates to: LISLVTFWPIDS*EPWRPHRSRMP
Trigger: GGGCATCCGGGACCTATGGGGCCGCCAGGGTTCCCAGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp ATGTGGCCCCTCAGGTCCTTGCATCCCGGGAAATCCAATGACACCTaGCAACCCTGGCAAGCCTCTTTCTCCCTTTTGTCCCTTCACGCC +
Preference number: 6 (lower is better)
Translates to: MWPLRSLHPGKSNDT*QPWQASFSLLSLHA
Trigger: GGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAGGGGCCACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp GCTGCCAGCCGTACCCAAGTCCTGCCCGTGGGCACGCTCGTTGCCTaGGACATAGAGCAGAGAGTATCCATGGTAAAGAATTTTGGTCCC +
Preference number: 6 (lower is better)
Translates to: AASRTQVLPVGTLVA*DIEQRVSMVKNFGP
Trigger: GGGACCAAAATTCTTTACCATGGATACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGCTGGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS GCA 72 bp CAGCCGTACCCAAGTCCTGCCCGTGGGCACGCTCGTTaGCTTGGACATAGAGCAGAGAGTATCCATGGTAAA +
Preference number: 6 (lower is better)
Translates to: QPYPSPARGHAR*LGHRAESIHGK
Trigger: TTTACCATGGATACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGGTACGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 72 bp CATGACACCCATTTCACCTTTAGAACCTGGGAACCCTaGAACTCCAGGTGTCCCCTGCTGTCCAGGAAGGCC +
Preference number: 6 (lower is better)
Translates to: HDTHFTFRTWEP*NSRCPLLSRKA
Trigger: GGCCTTCCTGGACAGCAGGGGACACCTGGAGTTCCAGGGTTCCCAGGTTCTAAAGGTGAAATGGGTGTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209661.2
ENSMUST00000209735.2
CDS CAA 72 bp CTTAGGGCCTGGAACCCCCGGAGCTCCTGGCCAACCTaGATTTCCCTTGTCACCTTTTGGCCCATTGATTCC +
Preference number: 6 (lower is better)
Translates to: LRAWNPRSSWPT*ISLVTFWPIDS
Trigger: GGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp TCACAAACCGCACACCTGCTAATGAAGGGCCGGATGTaGTCCCCAGAGATGGGTGCCATGGACATGGGCATG +
Preference number: 6 (lower is better)
Translates to: SQTAHLLMKGRM*SPEMGAMDMGM
Trigger: CATGCCCATGTCCATGGCACCCATCTCTGGGGACAACATCCGGCCCTTCATTAGCAGGTGTGCGGTTTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
CDS TCA 72 bp TTAGGGCCTGGAACCCCCGGAGCTCCTGGCCAACCTTaGTTTCCCTTGTCACCTTTTGGCCCATTGATTCCT +
Preference number: 6 (lower is better)
Translates to: LGPGTPGAPGQP*FPLSPFGPLIP
Trigger: AGGAATCAATGGGCCAAAAGGTGACAAGGGAAATCAAGGTTGGCCAGGAGCTCCGGGGGTTCCAGGCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp AAAAATATCTCTCCAGGCTCTCCCTTAGCTCCAGGCTaGCCTATAAGCCCTGGTGAACCTTGTGGACCCGGC +
Preference number: 6 (lower is better)
Translates to: KNISPGSPLAPG*PISPGEPCGPG
Trigger: GCCGGGTCCACAAGGTTCACCAGGGCTTATAGGCCAGCCTGGAGCTAAGGGAGAGCCTGGAGAGATATTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp CTTCATGCTCCCCATGTCCACATGCTCCATGGATCCTaGCATGCCAGGAAGCCCAACGTCACCTTTATCACC +
Preference number: 6 (lower is better)
Translates to: LHAPHVHMLHGS*HARKPNVTFIT
Trigger: GGTGATAAAGGTGACGTTGGGCTTCCTGGCATGCCAGGATCCATGGAGCATGTGGACATGGGGAGCATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp GGGGACACAGTGGGTCATCTGTTGTCTGACTATGCCTaGTCACAAGGAAGCCATGGTCCACAGATGGGGTAC +
Preference number: 6 (lower is better)
Translates to: GDTVGHLLSDYA*SQGSHGPQMGY
Trigger: GTACCCCATCTGTGGACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAACAGATGACCCACTGTGTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS TCA 72 bp GTGGGCTTCCATCACGAAGGAATAGCCGATCCACAGTaGGGACCAACCGTTAGGGCACTGCGGAATCTGAAT +
Preference number: 6 (lower is better)
Translates to: VGFHHEGIADPQ*GPTVRALRNLN
Trigger: ATTCAGATTCCGCAGTGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTATTCCTTCGTGATGGAAGCCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209598.2
CDS GCA 72 bp TCAGGTCCTTGCATCCCGGGAAATCCAATGACACCTTaGAACCCTGGCAAGCCTCTTTCTCCCTTTTGTCCC +
Preference number: 6 (lower is better)
Translates to: SGPCIPGNPMTP*NPGKPLSPFCP
Trigger: GGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TTGCATCCCGGGAAATCCAATGACACCTTGCAACCCTaGCAAGCCTCTTTCTCCCTTTTGTCCCTTCACGCC +
Preference number: 6 (lower is better)
Translates to: LHPGKSNDTLQP*QASFSLLSLHA
Trigger: GGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp CTCAGGTCCTTGCATCCCGGGAAATCCAATGACACCTaGCAACCCTGGCAAGCCTCTTTCTCCCTTTTGTCC +
Preference number: 6 (lower is better)
Translates to: LRSLHPGKSNDT*QPWQASFSLLS
Trigger: GGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTCATTGGATTTCCCGGGATGCAAGGACCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 72 bp CGTACCCAAGTCCTGCCCGTGGGCACGCTCGTTGCCTaGGACATAGAGCAGAGAGTATCCATGGTAAAGAAT +
Preference number: 6 (lower is better)
Translates to: RTQVLPVGTLVA*DIEQRVSMVKN
Trigger: ATTCTTTACCATGGATACTCTCTGCTCTATGTCCAAGGCAACGAGCGTGCCCACGGGCAGGACTTGGGTACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS TCA 72 bp GGCAAGCCTCTTTCTCCCTTTTGTCCCTTCACGCCATaGCAGTCACATTTTCCACAGCCAGAGCCACCACAA +
Preference number: 6 (lower is better)
Translates to: GKPLSPFCPFTP*QSHFPQPEPPQ
Trigger: TTGTGGTGGCTCTGGCTGTGGAAAATGTGACTGTCATGGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp AATCCTCTCTCCCCTTTCAGCAGTGTTCCGGGAACGTaGCCGAGAATTTCACCAGGATCTCCCTTCATTCCT +
Preference number: 6 (lower is better)
Translates to: NPLSPFSSVPGT*PRISPGSPFIP
Trigger: AGGAATGAAGGGAGATCCTGGTGAAATTCTCGGCCACGTTCCCGGAACACTGCTGAAAGGGGAGAGAGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000208095.2
ENSMUST00000209735.2
CDS CCA 72 bp CCCTTGCTTGCCAGGTTCACCTTTCTCTCCATATCCTaGTACTCCCGGAAATCCAGGTTCACCTTTCTGACC +
Preference number: 6 (lower is better)
Translates to: PLLARFTFLSIS*YSRKSRFTFLT
Trigger: GGTCAGAAAGGTGAACCTGGATTTCCGGGAGTACCAGGATATGGAGAGAAAGGTGAACCTGGCAAGCAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CAA 90 bp CATGGTAAAGAATTTTGGTCCCTGGGGGACACAGTGGGTCATCTGTaGTCTGACTATGCCTGGTCACAAGGAAGCCATGGTCCACAGATG +
Preference number: 6 (lower is better)
Translates to: HGKEFWSLGDTVGHL*SDYAWSQGSHGPQM
Trigger: CATCTGTGGACCATGGCTTCCTTGTGACCAGGCATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CAA 72 bp GACACCTTGCAACCCTGGCAAGCCTCTTTCTCCCTTTaGTCCCTTCACGCCATGACAGTCACATTTTCCACA +
Preference number: 6 (lower is better)
Translates to: DTLQPWQASFSL*SLHAMTVTFST
Trigger: TGTGGAAAATGTGACTGTCATGGCGTGAAGGGACAAAAGGGAGAAAGAGGCTTGCCAGGGTTGCAAGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033898.10
ENSMUST00000209735.2
CDS CCA 72 bp TCCATGGTAAAGAATTTTGGTCCCTGGGGGACACAGTaGGTCATCTGTTGTCTGACTATGCCTGGTCACAAG +
Preference number: 6 (lower is better)
Translates to: SMVKNFGPWGTQ*VICCLTMPGHK
Trigger: CTTGTGACCAGGCATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2
CDS CCA 72 bp GAGCAGAGAGTATCCATGGTAAAGAATTTTGGTCCCTaGGGGACACAGTGGGTCATCTGTTGTCTGACTATG +
Preference number: 6 (lower is better)
Translates to: EQRVSMVKNFGP*GTQWVICCLTM
Trigger: CATAGTCAGACAACAGATGACCCACTGTGTCCCCCAGGGACCAAAATTCTTTACCATGGATACTCTCTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033898.10
ENSMUST00000209598.2
ENSMUST00000209735.2