RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL23A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063564

Ensembl transcript IDs: ENSMUST00000102765.9, ENSMUST00000151098.2

Found 213 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGAGAATACAAGCTCCCGTGTCAGGGTGGCTTCTGGAAGCGTGCTaGACTTGGGTGGAGCAAGGCCCTCTTCGGGTTCTTCCCATTGCC +
Preference number: 1 (lower is better)
Translates to: PRIQAPVSGWLLEAC*TWVEQGPLRVLPIA
Trigger: GGCAATGGGAAGAACCCGAAGAGGGCCTTGCTCCACCCAAGTTCAGCACGCTTCCAGAAGCCACCCTGACACGGGAGCTTGTATTCTCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 90 bp GGTAGGGAGAACCAAGGCCTCCTCTCAGTCCTTGAGCCTCATTGTTaGGGCAGGGCACTCCCCAGCGTCTCACTTGGGACCTTGAACAAC +
Preference number: 1 (lower is better)
Translates to: GRENQGLLSVLEPHC*GRALPSVSLGTLNN
Trigger: GTTGTTCAAGGTCCCAAGTGAGACGCTGGGGAGTGCCCTGCCTCAACAATGAGGCTCAAGGACTGAGAGGAGGCCTTGGTTCTCCCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp TTTCCCAAGGTCCGAGAATACAAGCTCCCGTGTCAGGGTGGCTTCTaGAAGCGTGCTGAACTTGGGTGGAGCAAGGCCCTCTTCGGGTTC +
Preference number: 1 (lower is better)
Translates to: FPKVREYKLPCQGGF*KRAELGWSKALFGF
Trigger: GAACCCGAAGAGGGCCTTGCTCCACCCAAGTTCAGCACGCTTCCAGAAGCCACCCTGACACGGGAGCTTGTATTCTCGGACCTTGGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GGGCCTCTGCTTAGCAAGGAATGCATGTGTACAGTCTGGGGAGTGTaGCCCTCCTTGGATCTCTGCCCTTGGAGGAAGGGGACAGAGACA +
Preference number: 1 (lower is better)
Translates to: GPLLSKECMCTVWGV*PSLDLCPWRKGTET
Trigger: TGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACATGCATTCCTTGCTAAGCAGAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 90 bp GTGCTGAACTTGGGTGGAGCAAGGCCCTCTTCGGGTTCTTCCCATTaGCTTCTCCCCAAGTGCTGGACTCTAGGAATCTTTGCTGGCCCT +
Preference number: 1 (lower is better)
Translates to: VLNLGGARPSSGSSH*LLPKCWTLGIFAGP
Trigger: AGGGCCAGCAAAGATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGGCCTTGCTCCACCCAAGTTCAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GCAAGGCCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTGCTaGACTCTAGGAATCTTTGCTGGCCCTGTTGAACATAGGGCCCCA +
Preference number: 1 (lower is better)
Translates to: ARPSSGSSHCLLPKC*TLGIFAGPVEHRAP
Trigger: TGGGGCCCTATGTTCAACAGGGCCAGCAAAGATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGGCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 90 bp GGACACTCCATGGCTCTGCATGTCCATTTGCAAGGATACAAGGTATaGGTCCACACGGGGGCAGTAATGGGCCAAGAATGGCCCAGGGCA +
Preference number: 1 (lower is better)
Translates to: GHSMALHVHLQGYKV*VHTGAVMGQEWPRA
Trigger: TGCCCTGGGCCATTCTTGGCCCATTACTGCCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 90 bp TCTCTCTGTCCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTaGATGTCCATTTGCAAGGATACAAGGTATGAGTCCACACGGGGG +
Preference number: 1 (lower is better)
Translates to: SLCPHFRLAQDTPWL*MSICKDTRYESTRG
Trigger: CCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGACAGAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp ATGTGTACAGTCTGGGGAGTGTGGCCCTCCTTGGATCTCTGCCCTTaGAGGAAGGGGACAGAGACACTGTCATTGACGCTCCTGTCTTTT +
Preference number: 1 (lower is better)
Translates to: MCTVWGVWPSLDLCP*RKGTETLSLTLLSF
Trigger: AAAAGACAGGAGCGTCAATGACAGTGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 90 bp AGACCCTGTCTCAACCAACAAGCAATCATTCCCCTGCCCAACCCTTaGATCCAGAGCAGGGTTTCCTCAGCTGGCATTCACAGTGAGCAG +
Preference number: 1 (lower is better)
Translates to: RPCLNQQAIIPLPNP*IQSRVSSAGIHSEQ
Trigger: CTGCTCACTGTGAATGCCAGCTGAGGAAACCCTGCTCTGGATTCAAGGGTTGGGCAGGGGAATGATTGCTTGTTGGTTGAGACAGGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 90 bp GAAGTTTCCTCAGAGCAGCCTGTCCGCATTCCTGCTGGCTTCCTGTaGAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACAT +
Preference number: 1 (lower is better)
Translates to: EVSSEQPVRIPAGFL*RLSRGWLAHLQMLH
Trigger: ATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCTCTGAGGAAACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR CCA 90 bp GGCTACAGCAGTTGTCCAAGGGGGTGCTATTGGACAGTGAGAAGCTaGGGCAGTGGGGTTTCAGGAAACAGTTGTTGCAAGTCTCTGCTA +
Preference number: 1 (lower is better)
Translates to: GYSSCPRGCYWTVRS*GSGVSGNSCCKSLL
Trigger: TAGCAGAGACTTGCAACAACTGTTTCCTGAAACCCCACTGCCCCAGCTTCTCACTGTCCAATAGCACCCCCTTGGACAACTGCTGTAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp AAGGCCTATCCTTCCTGTCCTTGGTCCCATCCTCTCTCCATTTTCTaGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACA +
Preference number: 1 (lower is better)
Translates to: KAYPSCPWSHPLSIF*HLSFQGNPGGQEGT
Trigger: TGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGAAAATGGAGAGAGGATGGGACCAAGGACAGGAAGGATAGGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GGGTCTCTTCATCTTACCATTAGGGTTCACTGGGCTGTCGGAAGCTaGCTTTACACTGAGGTATCCACAGAGCCTGCTGTTTCCCAAGGT +
Preference number: 1 (lower is better)
Translates to: GSLHLTIRVHWAVGS*LYTEVSTEPAVSQG
Trigger: ACCTTGGGAAACAGCAGGCTCTGTGGATACCTCAGTGTAAAGCCAGCTTCCGACAGCCCAGTGAACCCTAATGGTAAGATGAAGAGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GCTGAGCATAACAAAAGGGGATACAGAGGACTCAGTGACAGGATGTaGCCAGTCCCAGGATTCTGCTGGCATGTGTGGGTTCAGATCTTG +
Preference number: 1 (lower is better)
Translates to: AEHNKRGYRGLSDRM*PVPGFCWHVWVQIL
Trigger: CAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAGTCCTCTGTATCCCCTTTTGTTATGCTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp CCAGGCCATGCAGAAAAGTCACAGGTTGGTAGGTGTCATTGTCATTaGATCCTAGCTGACAGACAGATGAGGGGGAATCCACTTGAGGCC +
Preference number: 1 (lower is better)
Translates to: PGHAEKSQVGRCHCH*ILADRQMRGNPLEA
Trigger: GGCCTCAAGTGGATTCCCCCTCATCTGTCTGTCAGCTAGGATCCAATGACAATGACACCTACCAACCTGTGACTTTTCTGCATGGCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 90 bp GGATACAGAGGACTCAGTGACAGGATGTGGCCAGTCCCAGGATTCTaGTGGCATGTGTGGGTTCAGATCTTGAGCCTGTATCTTCTTATC +
Preference number: 1 (lower is better)
Translates to: GYRGLSDRMWPVPGF*WHVWVQILSLYLLI
Trigger: GATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAGTCCTCTGTATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp CTCAGTGACAGGATGTGGCCAGTCCCAGGATTCTGCTGGCATGTGTaGGTTCAGATCTTGAGCCTGTATCTTCTTATCTCCTACCCTGAA +
Preference number: 1 (lower is better)
Translates to: LSDRMWPVPGFCWHV*VQILSLYLLISYPE
Trigger: TTCAGGGTAGGAGATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp TACAGAGGACTCAGTGACAGGATGTGGCCAGTCCCAGGATTCTGCTaGCATGTGTGGGTTCAGATCTTGAGCCTGTATCTTCTTATCTCC +
Preference number: 1 (lower is better)
Translates to: YRGLSDRMWPVPGFC*HVWVQILSLYLLIS
Trigger: GGAGATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAGTCCTCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp ATTTCTGGCTCTGGCAGGAAGTGGCAGCATGTGACTCTGAAGGCTTaGTCATATGAGGTGACACAGCTTTCTAGGAATCCTGCTGCCATG +
Preference number: 1 (lower is better)
Translates to: ISGSGRKWQHVTLKA*SYEVTQLSRNPAAM
Trigger: CATGGCAGCAGGATTCCTAGAAAGCTGTGTCACCTCATATGACCAAGCCTTCAGAGTCACATGCTGCCACTTCCTGCCAGAGCCAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GTTGTTCTTAGGATGAAGGAGGAGTGCTTTGTTGACTGTAGGCTGTaGTGGGCTTGGGAGGCTATGTCACATCTCCAAAGCAGGCATTGT +
Preference number: 1 (lower is better)
Translates to: VVLRMKEECFVDCRL*WAWEAMSHLQSRHC
Trigger: ACAATGCCTGCTTTGGAGATGTGACATAGCCTCCCAAGCCCACCACAGCCTACAGTCAACAAAGCACTCCTCCTTCATCCTAAGAACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp ACTCATTCTCTCTGTCCTCACTTCAGGCTGGCACAGGACACTCCATaGCTCTGCATGTCCATTTGCAAGGATACAAGGTATGAGTCCACA +
Preference number: 1 (lower is better)
Translates to: THSLCPHFRLAQDTP*LCMSICKDTRYEST
Trigger: TGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGACAGAGAGAATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 90 bp TGTGGCCAGTCCCAGGATTCTGCTGGCATGTGTGGGTTCAGATCTTaGGCCTGTATCTTCTTATCTCCTACCCTGAATATATCCCCTGAT +
Preference number: 1 (lower is better)
Translates to: CGQSQDSAGMCGFRS*ACIFLSPTLNISPD
Trigger: ATCAGGGGATATATTCAGGGTAGGAGATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 90 bp GTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATaGCCACAGTTGGCGCATCCCATAAAGAAGTTCAATATATTACTG +
Preference number: 1 (lower is better)
Translates to: VQIVQGLVGTLANVT*PQLAHPIKKFNILL
Trigger: CAGTAATATATTGAACTTCTTTATGGGATGCGCCAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR TCA 90 bp CCTGTCTTTTCTACACACAGGGAAAGAGCTTGGTTTTGTCATCTATaGAAATGGGCACATTTGTTGGGCATCTTTCTTCAGTTTGCTGTA +
Preference number: 1 (lower is better)
Translates to: PVFSTHRERAWFCHL*KWAHLLGIFLQFAV
Trigger: TACAGCAAACTGAAGAAAGATGCCCAACAAATGTGCCCATTTTCATAGATGACAAAACCAAGCTCTTTCCCTGTGTGTAGAAAAGACAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 90 bp CGTGCTGAACTTGGGTGGAGCAAGGCCCTCTTCGGGTTCTTCCCATaGCCTTCTCCCCAAGTGCTGGACTCTAGGAATCTTTGCTGGCCC +
Preference number: 2 (lower is better)
Translates to: RAELGWSKALFGFFP*PSPQVLDSRNLCWP
Trigger: GGGCCAGCAAAGATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGGCCTTGCTCCACCCAAGTTCAGCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 90 bp GAACTGGCCTTCTTGGTAGGGAGAACCAAGGCCTCCTCTCAGTCCTaGAGCCTCATTGTTGAGGCAGGGCACTCCCCAGCGTCTCACTTG +
Preference number: 2 (lower is better)
Translates to: ELAFLVGRTKASSQS*SLIVEAGHSPASHL
Trigger: CAAGTGAGACGCTGGGGAGTGCCCTGCCTCAACAATGAGGCTCAAGGACTGAGAGGAGGCCTTGGTTCTCCCTACCAAGAAGGCCAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 90 bp TCCTCAGAGCAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATaGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCAC +
Preference number: 2 (lower is better)
Translates to: SSEQPVRIPAGFLCR*SRGWLAHLQMLHGH
Trigger: GTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCTCTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR CAA 90 bp CATGTGTACAGTCTGGGGAGTGTGGCCCTCCTTGGATCTCTGCCCTaGGAGGAAGGGGACAGAGACACTGTCATTGACGCTCCTGTCTTT +
Preference number: 2 (lower is better)
Translates to: HVYSLGSVALLGSLP*EEGDRDTVIDAPVF
Trigger: AAAGACAGGAGCGTCAATGACAGTGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAAAGCTGGCATTCACAGTaGGCAGCTTCACTACTGGGC +
Preference number: 2 (lower is better)
Translates to: SGICPFKATLEAKKAQAESWHSQ*AASLLG
Trigger: GCCCAGTAGTGAAGCTGCTCACTGTGAATGCCAGCT...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp TCCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTGCATGTCCATTTGCAACCCTCCTTGGATCTCTaGCCTTGGAGGAAGGGGACA +
Preference number: 2 (lower is better)
Translates to: SSLQAGTGHSMALHVHLQPSLDL*PWRKGT
Trigger: TGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGG...TTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp GGTATCCACAGAGCCTGCTGTTTCCCAAGGTCCGAGAATACAAGCTCCCGTGTCTGGACAGTGAGAAGCTaGGGCAGTGGGGTTTCAGGA +
Preference number: 2 (lower is better)
Translates to: GIHRACCFPRSENTSSRVWTVRS*GSGVSG
Trigger: TCCTGAAACCCCACTGCCCCAGCTTCTCACTGTCCA...GACACGGGAGCTTGTATTCTCGGACCTTGGGAAACAGCAGGCTCTGTGGATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 90 bp CTTAGCAAGGAATGCATGTGTACAGTCTGGGGAGTGTGGCCCTCCTaGGATCTCTGCCCTTGGAGGAAGGGGACAGAGACACTGTCATTG +
Preference number: 2 (lower is better)
Translates to: LSKECMCTVWGVWPS*DLCPWRKGTETLSL
Trigger: CAATGACAGTGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACATGCATTCCTTGCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp GTCGCTTCTCTCAAGCCTCAGAGCCATCTGTCCATGGGGACAGTCATCTCGTTGAAGCTGGCTTTACACTaGGGTATCCACAGAGCCTGC +
Preference number: 2 (lower is better)
Translates to: VASLKPQSHLSMGTVISLKLALH*GIHRAC
Trigger: GCAGGCTCTGTGGATACCTCAGTGTAAAGCCAGCTT...CAACGAGATGACTGTCCCCATGGACAGATGGCTCTGAGGCTTGAGAGAAGCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp AGGAAGGTTCTGACCCCCAAGGAGAGCCCCTTTGCTTCTTCAGCTAGTAACCATAACATAGGGCCCCAGTaGAGCTGCCTACGGCACAGT +
Preference number: 2 (lower is better)
Translates to: RKVLTPKESPFASSASNHNIGPQ*SCLRHS
Trigger: ACTGTGCCGTAGGCAGCTGCACTGGGGCCCTATGTT...ATGGTTACTAGCTGAAGAAGCAAAGGGGCTCTCCTTGGGGGTCAGAACCTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAAGAGAAGCTGGGGCAGTaGGGTTTCAGGAAACAGTTG +
Preference number: 2 (lower is better)
Translates to: SGICPFKATLEAKKAQAEEKLGQ*GFRKQL
Trigger: CAACTGTTTCCTGAAACCCCACTGCCCCAGCTTCTC...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp ACTTGGGACCTTGAACAACTCATTCTCTCTGTCCTCACTTCAGGCTGGCACAGGGAGTGTGGCCCTCCTTaGATCTCTGCCCTTGGAGGA +
Preference number: 2 (lower is better)
Translates to: TWDLEQLILSVLTSGWHRECGPP*ISALGG
Trigger: TCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTC...CCTGTGCCAGCCTGAAGTGAGGACAGAGAGAATGAGTTGTTCAAGGTCCCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp GGTATCCACAGAGCCTGCTGTTTCCCAAGGTCCGAGAATACAAGCTCCCGTGTCGCTGGTTGGCACACTTaGAAATGTTACATGGCCACA +
Preference number: 2 (lower is better)
Translates to: GIHRACCFPRSENTSSRVAGWHT*KCYMAT
Trigger: TGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGC...GACACGGGAGCTTGTATTCTCGGACCTTGGGAAACAGCAGGCTCTGTGGATACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp GACAGAGACACTGTCATTGACGCTCCTGTCTTTTCTACACACAGGGAAAGAGCTATACAGAGGACTCAGTaGCAGGATGTGGCCAGTCCC +
Preference number: 2 (lower is better)
Translates to: DRDTVIDAPVFSTHRERAIQRTQ*QDVASP
Trigger: GGGACTGGCCACATCCTGTCACTGAGTCCTCTGTAT...AGCTCTTTCCCTGTGTGTAGAAAAGACAGGAGCGTCAATGACAGTGTCTCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp GCTCTGCGTGCTGTCCACCCATCGTCAGGGGTCTGCCTAGCAGATTCCATATGTTATATTCCACAGAGCTaGATCTTACTGAACCACACC +
Preference number: 2 (lower is better)
Translates to: ALRAVHPSSGVCLADSICYIPQS*ILLNHT
Trigger: GGTGTGGTTCAGTAAGATTCAGCTCTGTGGAATATA...ACATATGGAATCTGCTAGGCAGACCCCTGACGATGGGTGGACAGCACGCAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp TCTCCATTTTCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCAATCTGGTTTCCTAGTTaGCCCAGTGTGGCAGAGAAC +
Preference number: 2 (lower is better)
Translates to: SPFSGICPFKATLEAKKAIWFPS*PSVAEN
Trigger: GTTCTCTGCCACACTGGGTCAACTAGGAAACCAGAT...TGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGAAAATGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp GTGGGTCTGTCTTCTAATTCAAGTGGGGTAAATTTCTGGCTCTGGCAGGAAGTGCCAGTCCCAGGATTCTaGTGGCATGTGTGGGTTCAG +
Preference number: 2 (lower is better)
Translates to: VGLSSNSSGVNFWLWQEVPVPGF*WHVWVQ
Trigger: CTGAACCCACACATGCCAGCAGAATCCTGGGACTGG...CACTTCCTGCCAGAGCCAGAAATTTACCCCACTTGAATTAGAAGACAGACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 90 bp TCCTTGGATCTCTGCCCTTGGAGGAAGGGGACAGAGACACTGTCATaGACGCTCCTGTCTTTTCTACACACAGGGAAAGAGCTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: SLDLCPWRKGTETLS*TLLSFLHTGKELGF
Trigger: AAAACCAAGCTCTTTCCCTGTGTGTAGAAAAGACAGGAGCGTCAATGACAGTGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAATTGAGGCAACAAATTTaGGGTGTCTTTGCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: SGICPFKATLEAKKAQAELRQQI*GVFAEH
Trigger: ATGCTCAGCAAAGACACCCCAAATTTGTTGCCTCAA...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp ACTTGGGACCTTGAACAACTCATTCTCTCTGTCCTCACTTCAGGCTGGCACAGGGTAAATTTCTGGCTCTaGCAGGAAGTGGCAGCATGT +
Preference number: 2 (lower is better)
Translates to: TWDLEQLILSVLTSGWHRVNFWL*QEVAAC
Trigger: ACATGCTGCCACTTCCTGCCAGAGCCAGAAATTTAC...CCTGTGCCAGCCTGAAGTGAGGACAGAGAGAATGAGTTGTTCAAGGTCCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp TCTGCATGTCCATTTGCAAGGATACAAGGTATGAGTCCACACGGGGGCAGTAATGCAGAGAACATGGTCTaGTGCTTTTTGCCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: SACPFARIQGMSPHGGSNAENMV*CFLPAP
Trigger: AGGAGCTGGCAAAAAGCAGCAGACCATGTTCTCTGC...ATTACTGCCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp TTATCTCCTACCCTGAATATATCCCCTGATTTAGAGGAAGGTTCTGACCCCCAATGTCAGGGTGGCTTCTaGAAGCGTGCTGAACTTGGG +
Preference number: 2 (lower is better)
Translates to: LSPTLNISPDLEEGSDPQCQGGF*KRAELG
Trigger: CCCAAGTTCAGCACGCTTCCAGAAGCCACCCTGACA...TTGGGGGTCAGAACCTTCCTCTAAATCAGGGGATATATTCAGGGTAGGAGATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp TTATCTCCTACCCTGAATATATCCCCTGATTTAGAGGAAGGTTCTGACCCCCAACTGTCTCCTCCAGGCTaGCAAAGTCCTTTCCAGTTC +
Preference number: 2 (lower is better)
Translates to: LSPTLNISPDLEEGSDPQLSPPG*QSPFQF
Trigger: GAACTGGAAAGGACTTTGTCAGCCTGGAGGAGACAG...TTGGGGGTCAGAACCTTCCTCTAAATCAGGGGATATATTCAGGGTAGGAGATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR GCA 90 bp TTTCTTTTATCTGGTTTCCTAGTTGACCCAGTGTGGCAGAGAACATGGTCTGCTGTGTGGCTGGGCCTCTaGTTAGCAAGGAATGCATGT +
Preference number: 2 (lower is better)
Translates to: FLLSGFLVDPVWQRTWSAVWLGL*LARNAC
Trigger: ACATGCATTCCTTGCTAAGCAGAGGCCCAGCCACAC...AGCAGACCATGTTCTCTGCCACACTGGGTCAACTAGGAAACCAGATAAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp ACTTGGGACCTTGAACAACTCATTCTCTCTGTCCTCACTTCAGGCTGGCACAGGAATGGGCACATTTGTTaGGCATCTTTCTTCAGTTTG +
Preference number: 2 (lower is better)
Translates to: TWDLEQLILSVLTSGWHRNGHIC*ASFFSL
Trigger: CAAACTGAAGAAAGATGCCCAACAAATGTGCCCATT...CCTGTGCCAGCCTGAAGTGAGGACAGAGAGAATGAGTTGTTCAAGGTCCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGGGCTCTGGCAGGAAGTaGCAGCATGTGACTCTGAAG +
Preference number: 2 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLGSGRK*QHVTLK
Trigger: CTTCAGAGTCACATGCTGCCACTTCCTGCCAGAGCC...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGTGCATGTGTACAGTCTaGGGAGTGTGGCCCTCCTTG +
Preference number: 2 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLCMCTV*GVWPSL
Trigger: CAAGGAGGGCCACACTCCCCAGACTGTACACATGCA...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGGACTGTAGGCTGTGGTaGGCTTGGGAGGCTATGTCA +
Preference number: 2 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLDCRLW*AWEAMS
Trigger: TGACATAGCCTCCCAAGCCCACCACAGCCTACAGTC...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR TCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGTCTCACTTGGGACCTTaGACAACTCATTCTCTCTGT +
Preference number: 2 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLSHLGP*TTHSLC
Trigger: ACAGAGAGAATGAGTTGTTCAAGGTCCCAAGTGAGA...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGAGTTCAGTGCTAGCCTaGGCTACAAGAGAGCTAATT +
Preference number: 2 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLSSVLA*ATRELI
Trigger: AATTAGCTCTCTTGTAGCCCAGGCTAGCACTGAACT...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp TTGCTGGCCCTGTTGAACATAGGGCCCCAGTGCAGCTaGCTACGGCACAGTCCCGAAGCAAGAGGCTACAGC +
Preference number: 3 (lower is better)
Translates to: LLALLNIGPQCS*LRHSPEARGYS
Trigger: GCTGTAGCCTCTTGCTTCGGGACTGTGCCGTAGGCAGCTGCACTGGGGCCCTATGTTCAACAGGGCCAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp CAAGCTCCCGTGTCAGGGTGGCTTCTGGAAGCGTGCTaGACTTGGGTGGAGCAAGGCCCTCTTCGGGTTCTT +
Preference number: 3 (lower is better)
Translates to: QAPVSGWLLEAC*TWVEQGPLRVL
Trigger: AAGAACCCGAAGAGGGCCTTGCTCCACCCAAGTTCAGCACGCTTCCAGAAGCCACCCTGACACGGGAGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp AACCAAGGCCTCCTCTCAGTCCTTGAGCCTCATTGTTaGGGCAGGGCACTCCCCAGCGTCTCACTTGGGACC +
Preference number: 3 (lower is better)
Translates to: NQGLLSVLEPHC*GRALPSVSLGT
Trigger: GGTCCCAAGTGAGACGCTGGGGAGTGCCCTGCCTCAACAATGAGGCTCAAGGACTGAGAGGAGGCCTTGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp GAATCTTTGCTGGCCCTGTTGAACATAGGGCCCCAGTaGAGCTGCCTACGGCACAGTCCCGAAGCAAGAGGC +
Preference number: 3 (lower is better)
Translates to: ESLLALLNIGPQ*SCLRHSPEARG
Trigger: GCCTCTTGCTTCGGGACTGTGCCGTAGGCAGCTGCACTGGGGCCCTATGTTCAACAGGGCCAGCAAAGATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp GTCCGAGAATACAAGCTCCCGTGTCAGGGTGGCTTCTaGAAGCGTGCTGAACTTGGGTGGAGCAAGGCCCTC +
Preference number: 3 (lower is better)
Translates to: VREYKLPCQGGF*KRAELGWSKAL
Trigger: GAGGGCCTTGCTCCACCCAAGTTCAGCACGCTTCCAGAAGCCACCCTGACACGGGAGCTTGTATTCTCGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp TCAGAGCAGCCTGTCCGCATTCCTGCTGGCTTCCTGTaGAGATTGTCCAGGGGCTGGTTGGCACACTTGCAA +
Preference number: 3 (lower is better)
Translates to: SEQPVRIPAGFL*RLSRGWLAHLQ
Trigger: TTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR GCA 72 bp CAGCTGTGTGTGGCTGGGCCTCTGCTTAGCAAGGAATaGATGTGTACAGTCTGGGGAGTGTGGCCCTCCTTG +
Preference number: 3 (lower is better)
Translates to: QLCVAGPLLSKE*MCTVWGVWPSL
Trigger: CAAGGAGGGCCACACTCCCCAGACTGTACACATGCATTCCTTGCTAAGCAGAGGCCCAGCCACACACAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGAAGTTTCCTCAGAGCAGCCTGTCCGCATTCCTGCTaGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGGC +
Preference number: 3 (lower is better)
Translates to: RSFLRAACPHSC*LPVQIVQGLVG
Trigger: GCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCTCTGAGGAAACTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR-3UTR CAA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAATCCCCTGCCCAACCCTaGAATCCAGAGCAGGGTTTC +
Preference number: 3 (lower is better)
Translates to: SGICPFKATLEAKKAQAESPAQP*NPEQGF
Trigger: GAAACCCTGCTCTGGATTCAAGGGTTGGGCAGGGGA...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp GAGGCAGGGCACTCCCCAGCGTCTCACTTGGGACCTTaGACAACTCATTCTCTCTGTCCTCACTTCAGGCTG +
Preference number: 3 (lower is better)
Translates to: EAGHSPASHLGP*TTHSLCPHFRL
Trigger: CAGCCTGAAGTGAGGACAGAGAGAATGAGTTGTTCAAGGTCCCAAGTGAGACGCTGGGGAGTGCCCTGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CTTAGCAAGGAATGCATGTGTACAGTCTGGGGAGTGTaGCCCTCCTTGGATCTCTGCCCTTGGAGGAAGGGG +
Preference number: 3 (lower is better)
Translates to: LSKECMCTVWGV*PSLDLCPWRKG
Trigger: CCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACATGCATTCCTTGCTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAAAGAGAACTGGCCTTCTaGGTAGGGAGAACCAAGGCC +
Preference number: 3 (lower is better)
Translates to: SGICPFKATLEAKKAQAERELAF*VGRTKA
Trigger: GGCCTTGGTTCTCCCTACCAAGAAGGCCAGTTCTCT...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp CTGGCACAGGACACTCCATGGCTCTGCATGTCCATTTaGAAGGATACAAGGTATGAGTCCACACGGGGGCAG +
Preference number: 3 (lower is better)
Translates to: LAQDTPWLCMSI*KDTRYESTRGQ
Trigger: CTGCCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp CCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTaGTGGACTCTAGGAATCTTTGCTGGCCCTGTTGAA +
Preference number: 3 (lower is better)
Translates to: PSSGSSHCLLPK*WTLGIFAGPVE
Trigger: TTCAACAGGGCCAGCAAAGATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CCTTCCTGTCCTTGGTCCCATCCTCTCTCCATTTTCTaGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAA +
Preference number: 3 (lower is better)
Translates to: PSCPWSHPLSIF*HLSFQGNPGGQ
Trigger: TTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGAAAATGGAGAGAGGATGGGACCAAGGACAGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp TCTGCCCTTGGAGGAAGGGGACAGAGACACTGTCATTaGCGCTCCTGTCTTTTCTACACACAGGGAAAGAGC +
Preference number: 3 (lower is better)
Translates to: SALGGRGQRHCH*RSCLFYTQGKS
Trigger: GCTCTTTCCCTGTGTGTAGAAAAGACAGGAGCGTCAATGACAGTGTCTCTGTCCCCTTCCTCCAAGGGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp CCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTaGATGTCCATTTGCAAGGATACAAGGTATGAGTCC +
Preference number: 3 (lower is better)
Translates to: PHFRLAQDTPWL*MSICKDTRYES
Trigger: GGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGTTGTCCAAGGGGGTGCTATTGGACAGTGAGAAGCTaGGGCAGTGGGGTTTCAGGAAACAGTTGTTGCAAG +
Preference number: 3 (lower is better)
Translates to: SCPRGCYWTVRS*GSGVSGNSCCK
Trigger: CTTGCAACAACTGTTTCCTGAAACCCCACTGCCCCAGCTTCTCACTGTCCAATAGCACCCCCTTGGACAACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CTCAGTGACAGGATGTGGCCAGTCCCAGGATTCTGCTaGCATGTGTGGGTTCAGATCTTGAGCCTGTATCTT +
Preference number: 3 (lower is better)
Translates to: LSDRMWPVPGFC*HVWVQILSLYL
Trigger: AAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AACAAAAGGGGATACAGAGGACTCAGTGACAGGATGTaGCCAGTCCCAGGATTCTGCTGGCATGTGTGGGTT +
Preference number: 3 (lower is better)
Translates to: NKRGYRGLSDRM*PVPGFCWHVWV
Trigger: AACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCTGTCACTGAGTCCTCTGTATCCCCTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp GAGGAGTGCTTTGTTGACTGTAGGCTGTGGTGGGCTTaGGAGGCTATGTCACATCTCCAAAGCAGGCATTGT +
Preference number: 3 (lower is better)
Translates to: EECFVDCRLWWA*EAMSHLQSRHC
Trigger: ACAATGCCTGCTTTGGAGATGTGACATAGCCTCCCAAGCCCACCACAGCCTACAGTCAACAAAGCACTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp ATGAAGGAGGAGTGCTTTGTTGACTGTAGGCTGTGGTaGGCTTGGGAGGCTATGTCACATCTCCAAAGCAGG +
Preference number: 3 (lower is better)
Translates to: MKEECFVDCRLW*AWEAMSHLQSR
Trigger: CCTGCTTTGGAGATGTGACATAGCCTCCCAAGCCCACCACAGCCTACAGTCAACAAAGCACTCCTCCTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGGATGAAGGAGGAGTGCTTTGTTGACTGTAGGCTGTaGTGGGCTTGGGAGGCTATGTCACATCTCCAAAGC +
Preference number: 3 (lower is better)
Translates to: RMKEECFVDCRL*WAWEAMSHLQS
Trigger: GCTTTGGAGATGTGACATAGCCTCCCAAGCCCACCACAGCCTACAGTCAACAAAGCACTCCTCCTTCATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp TCATTGTTGAGGCAGGGCACTCCCCAGCGTCTCACTTaGGACCTTGAACAACTCATTCTCTCTGTCCTCACT +
Preference number: 3 (lower is better)
Translates to: SLLRQGTPQRLT*DLEQLILSVLT
Trigger: AGTGAGGACAGAGAGAATGAGTTGTTCAAGGTCCCAAGTGAGACGCTGGGGAGTGCCCTGCCTCAACAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp GTCGCTTCTCTCAAGCCTCAGAGCCATCTGTCCATGGGGACAGTCATCTCGTTGGTCTCACTTGGGACCTaGAACAACTCATTCTCTCTG +
Preference number: 3 (lower is better)
Translates to: VASLKPQSHLSMGTVISLVSLGT*NNSFSL
Trigger: CAGAGAGAATGAGTTGTTCAAGGTCCCAAGTGAGAC...CAACGAGATGACTGTCCCCATGGACAGATGGCTCTGAGGCTTGAGAGAAGCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp GCTCTGCGTGCTGTCCACCCATCGTCAGGGGTCTGCCTAGCAGATTCCATATGTTTCAGGAAACAGTTGTaGCAAGTCTCTGCTAATCAG +
Preference number: 3 (lower is better)
Translates to: ALRAVHPSSGVCLADSICFRKQL*QVSANQ
Trigger: CTGATTAGCAGAGACTTGCAACAACTGTTTCCTGAA...ACATATGGAATCTGCTAGGCAGACCCCTGACGATGGGTGGACAGCACGCAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp TCTGCATGTCCATTTGCAAGGATACAAGGTATGAGTCCACACGGGGGCAGTAATAGGAGGAGTGCTTTGTaGACTGTAGGCTGTGGTGGG +
Preference number: 3 (lower is better)
Translates to: SACPFARIQGMSPHGGSNRRSAL*TVGCGG
Trigger: CCCACCACAGCCTACAGTCAACAAAGCACTCCTCCT...ATTACTGCCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp TTTTGTCAGGCTGACCAGAGGTCTAGGTGGGAGACTTaGGACACAAGTTCTGAACAAGAGGCCTGTCTCCTC +
Preference number: 3 (lower is better)
Translates to: FCQADQRSRWET*DTSSEQEACLL
Trigger: GAGGAGACAGGCCTCTTGTTCAGAACTTGTGTCTCAAGTCTCCCACCTAGACCTCTGGTCAGCCTGACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp GTGACACAGCTTTCTAGGAATCCTGCTGCCATGCTGTaGGGAAGTCCAGGCCATGCAGAAAAGTCACAGGTT +
Preference number: 3 (lower is better)
Translates to: VTQLSRNPAAML*GSPGHAEKSQV
Trigger: AACCTGTGACTTTTCTGCATGGCCTGGACTTCCTCACAGCATGGCAGCAGGATTCCTAGAAAGCTGTGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp CCTACCCCTGCAGCCCTAACGATGTTGTTCTTAGGATaGAGGAGGAGTGCTTTGTTGACTGTAGGCTGTGGT +
Preference number: 3 (lower is better)
Translates to: PTPAALTMLFLG*RRSALLTVGCG
Trigger: ACCACAGCCTACAGTCAACAAAGCACTCCTCCTTCATCCTAAGAACAACATCGTTAGGGCTGCAGGGGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp ATGGCTCTGCATGTCCATTTGCAAGGATACAAGGTATaGGTCCACACGGGGGCAGTAATGGGCCAAGAATGG +
Preference number: 3 (lower is better)
Translates to: MALHVHLQGYKV*VHTGAVMGQEW
Trigger: CCATTCTTGGCCCATTACTGCCCCCGTGTGGACTCATACCTTGTATCCTTGCAAATGGACATGCAGAGCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp TGTAAGGACAAGTTAGGGGGAGACATGGGCCCACTCTaGAGGACCGTGATTACTATTTGGTCTTGGAGCAGA +
Preference number: 3 (lower is better)
Translates to: CKDKLGGDMGPL*RTVITIWSWSR
Trigger: TCTGCTCCAAGACCAAATAGTAATCACGGTCCTGCAGAGTGGGCCCATGTCTCCCCCTAACTTGTCCTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp TGCTCAGGCTTGCTGGGGGATCAGCCTTCAGGTTCATaGTGTCCGTACCATTTACTAAGGAGGCCTGTTTTT +
Preference number: 3 (lower is better)
Translates to: CSGLLGDQPSGS*CPYHLLRRPVF
Trigger: AAAAACAGGCCTCCTTAGTAAATGGTACGGACACCATGAACCTGAAGGCTGATCCCCCAGCAAGCCTGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGGATGTGGCCAGTCCCAGGATTCTGCTGGCATGTGTaGGTTCAGATCTTGAGCCTGTATCTTCTTATCTCC +
Preference number: 3 (lower is better)
Translates to: RMWPVPGFCWHV*VQILSLYLLIS
Trigger: GGAGATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGACTGGCCACATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CTCTGTCCTCACTTCAGGCTGGCACAGGACACTCCATaGCTCTGCATGTCCATTTGCAAGGATACAAGGTAT +
Preference number: 3 (lower is better)
Translates to: LCPHFRLAQDTP*LCMSICKDTRY
Trigger: ATACCTTGTATCCTTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp GTCTTTGCTGAGCATAACAAAAGGGGATACAGAGGACTCAGTGACAGGATGTGGCCAAGGAGAGCCCCTTaGCTTCTTCAGCTAGTAACC +
Preference number: 3 (lower is better)
Translates to: VFAEHNKRGYRGLSDRMWPRRAP*LLQLVT
Trigger: GGTTACTAGCTGAAGAAGCAAAGGGGCTCTCCTTGG...CCACATCCTGTCACTGAGTCCTCTGTATCCCCTTTTGTTATGCTCAGCAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp TCCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTGCATGTCCATTTGCAAGTGTGGGTTCAGATCTaGAGCCTGTATCTTCTTATC +
Preference number: 3 (lower is better)
Translates to: SSLQAGTGHSMALHVHLQVWVQI*SLYLLI
Trigger: GATAAGAAGATACAGGCTCAAGATCTGAACCCACAC...TTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp TCATGGCGCCTTTACATGAGGAGGGCTGTGAAGCCATaGATGGAGCAGGAGCTAGGAACCTTCATTAGAAGT +
Preference number: 3 (lower is better)
Translates to: SWRLYMRRAVKP*MEQELGTFIRS
Trigger: ACTTCTAATGAAGGTTCCTAGCTCCTGCTCCATTCATGGCTTCACAGCCCTCCTCATGTAAAGGCGCCATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGGTATGGGTCTCTTCATCTTACCATTAGGGTTCACTaGGCTGTCGGAAGCTGGCTTTACACTGAGGTATCC +
Preference number: 3 (lower is better)
Translates to: RYGSLHLTIRVH*AVGSWLYTEVS
Trigger: GGATACCTCAGTGTAAAGCCAGCTTCCGACAGCCCAGTGAACCCTAATGGTAAGATGAAGAGACCCATACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp TCTGGCAGGAAGTGGCAGCATGTGACTCTGAAGGCTTaGTCATATGAGGTGACACAGCTTTCTAGGAATCCT +
Preference number: 3 (lower is better)
Translates to: SGRKWQHVTLKA*SYEVTQLSRNP
Trigger: AGGATTCCTAGAAAGCTGTGTCACCTCATATGACCAAGCCTTCAGAGTCACATGCTGCCACTTCCTGCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp AGGTTTGAATCCCAGCACTGTAGAAGTCAGGCACAGTaGTGCACAACTGTAACTGGAGCAGATAGAGCAAGG +
Preference number: 3 (lower is better)
Translates to: RFESQHCRSQAQ*CTTVTGADRAR
Trigger: CCTTGCTCTATCTGCTCCAGTTACAGTTGTGCACCACTGTGCCTGACTTCTACAGTGCTGGGATTCAAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CTTGAACAACTCATTCTCTCTGTCCTCACTTCAGGCTaGCACAGGACACTCCATGGCTCTGCATGTCCATTT +
Preference number: 3 (lower is better)
Translates to: LEQLILSVLTSG*HRTLHGSACPF
Trigger: AAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGACAGAGAGAATGAGTTGTTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR-3UTR CAA 90 bp TTTCTTTTATCTGGTTTCCTAGTTGACCCAGTGTGGCAGAGAACATGGTCTGCTTTCGGGTTCTTCCCATaGCCTTCTCCCCAAGTGCTG +
Preference number: 3 (lower is better)
Translates to: FLLSGFLVDPVWQRTWSAFGFFP*PSPQVL
Trigger: CAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAA...AGCAGACCATGTTCTCTGCCACACTGGGTCAACTAGGAAACCAGATAAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp TTTGAATCCCAGCACTGTAGAAGTCAGGCACAGTGGTaGACAACTGTAACTGGAGCAGATAGAGCAAGGAGT +
Preference number: 3 (lower is better)
Translates to: FESQHCRSQAQW*TTVTGADRARS
Trigger: ACTCCTTGCTCTATCTGCTCCAGTTACAGTTGTGCACCACTGTGCCTGACTTCTACAGTGCTGGGATTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp GCAGAAAAGTCACAGGTTGGTAGGTGTCATTGTCATTaGATCCTAGCTGACAGACAGATGAGGGGGAATCCA +
Preference number: 3 (lower is better)
Translates to: AEKSQVGRCHCH*ILADRQMRGNP
Trigger: TGGATTCCCCCTCATCTGTCTGTCAGCTAGGATCCAATGACAATGACACCTACCAACCTGTGACTTTTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp CTGTCTTCTAATTCAAGTGGGGTAAATTTCTGGCTCTaGCAGGAAGTGGCAGCATGTGACTCTGAAGGCTTG +
Preference number: 3 (lower is better)
Translates to: LSSNSSGVNFWL*QEVAACDSEGL
Trigger: CAAGCCTTCAGAGTCACATGCTGCCACTTCCTGCCAGAGCCAGAAATTTACCCCACTTGAATTAGAAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CCA 72 bp GTGGGTCTGTCTTCTAATTCAAGTGGGGTAAATTTCTaGCTCTGGCAGGAAGTGGCAGCATGTGACTCTGAA +
Preference number: 3 (lower is better)
Translates to: VGLSSNSSGVNF*LWQEVAACDSE
Trigger: TTCAGAGTCACATGCTGCCACTTCCTGCCAGAGCCAGAAATTTACCCCACTTGAATTAGAAGACAGACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp CTGTCTTCTGAATGCCAGGAGTGTCCCCCAATCCTGTaGCAACTCAAAGCTTTAAGGACAGGGAATCTAGTA +
Preference number: 3 (lower is better)
Translates to: LSSECQECPPIL*QLKALRTGNLV
Trigger: TACTAGATTCCCTGTCCTTAAAGCTTTGAGTTGTCACAGGATTGGGGGACACTCCTGGCATTCAGAAGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp AAAATGGGCACATTTGTTGGGCATCTTTCTTCAGTTTaGTGTAAGGACAAGTTAGGGGGAGACATGGGCCCA +
Preference number: 3 (lower is better)
Translates to: KMGTFVGHLSSV*CKDKLGGDMGP
Trigger: TGGGCCCATGTCTCCCCCTAACTTGTCCTTACAGCAAACTGAAGAAAGATGCCCAACAAATGTGCCCATTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR TCA 72 bp TCCCAGGATTCTGCTGGCATGTGTGGGTTCAGATCTTaGGCCTGTATCTTCTTATCTCCTACCCTGAATATA +
Preference number: 3 (lower is better)
Translates to: SQDSAGMCGFRS*ACIFLSPTLNI
Trigger: TATATTCAGGGTAGGAGATAAGAAGATACAGGCTCAAGATCTGAACCCACACATGCCAGCAGAATCCTGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR GCA 72 bp ACATACAATTCAGTGGCATTAGTACATTCTCAATGTTaGATCTTGTCACCAAAACCCAGTCACAGAGCCCTT +
Preference number: 3 (lower is better)
Translates to: TYNSVALVHSQC*ILSPKPSHRAL
Trigger: AAGGGCTCTGTGACTGGGTTTTGGTGACAAGATGCAACATTGAGAATGTACTAATGCCACTGAATTGTATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR TCA 90 bp AGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGGGGTCCAGGCAGGCCGTaGGGGCCTCTCTCACCCGAT +
Preference number: 4 (lower is better)
Translates to: SLSAFLLASCADCPGAGWGPGRP*GPLSPD
Trigger: ATCGGGTGAGAGAGGCCCTCACGGCCTGCCTGGACC...CCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR TCA 90 bp AGCAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTCCACAGGGCAGGGCCTaGTGCCCTTCACAAGGCCCG +
Preference number: 4 (lower is better)
Translates to: SSLSAFLLASCADCPGAGPQGRA*CPSQGP
Trigger: CGGGCCTTGTGAAGGGCATCAGGCCCTGCCCTGTGG...ACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS-3UTR GCA 90 bp CAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGCCTGCAACTCCATCTTaGCCTTGGGCTCCCCGCGGG +
Preference number: 4 (lower is better)
Translates to: QPVRIPAGFLCRLSRGWLPATPS*PWAPRG
Trigger: CCCGCGGGGAGCCCAAGGGCAAGATGGAGTTGCAGG...CAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GAGCAAGGCCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTGCTGGACTCTCCCCTGAAGGCCCATaGGGCCAGGGGGACCAGGAG +
Preference number: 4 (lower is better)
Translates to: EQGPLRVLPIAFSPSAGLSPEGP*GQGDQE
Trigger: CTCCTGGTCCCCCTGGCCCCATGGGCCTTCAGGGGA...GAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGGCCTTGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAATGCAGGGCGGCCGCCTaGGCTCCCAACAGGAGACAG +
Preference number: 4 (lower is better)
Translates to: SGICPFKATLEAKKAQAECRAAA*APNRRQ
Trigger: CTGTCTCCTGTTGGGAGCCCAGGCGGCCGCCCTGCA...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGGCGCATCCCATACACCCCGGGGCCCTGTaGCTCCATCCACGCCTGGGT +
Preference number: 4 (lower is better)
Translates to: GLVGTLANVTWPQLAHPIHPGAL*LHPRLG
Trigger: ACCCAGGCGTGGATGGAGCCACAGGGCCCCGGGGTG...TATGGGATGCGCCAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CTGGGGAGTGTGGCCCTCCTTGGATCTCTGCCCTTGGAGGAAGGGGACAGAGACATCCGAGTTCACCCTTaGCTCCAGGGATCCCTGGTG +
Preference number: 4 (lower is better)
Translates to: LGSVALLGSLPLEEGDRDIRVHP*LQGSLV
Trigger: CACCAGGGATCCCTGGAGCCAAGGGTGAACTCGGAT...GTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGAGGACCAGGGGGCCCTaGTTCCACTATGATCTGGGC +
Preference number: 4 (lower is better)
Translates to: QPVRIPAGFLCRLSRGWLRTRGP*FHYDLG
Trigger: GCCCAGATCATAGTGGAACCAGGGCCCCCTGGTCCT...CAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp GTCGCTTCTCTCAAGCCTCAGAGCCATCTGTCCATGGGGACAGTCATCTCGTTGCTCTTCGTCCAGGCTTaGCACGCCGTCCAGGGGGAC +
Preference number: 4 (lower is better)
Translates to: VASLKPQSHLSMGTVISLLFVQA*HAVQGD
Trigger: GTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAG...CAACGAGATGACTGTCCCCATGGACAGATGGCTCTGAGGCTTGAGAGAAGCGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAATCCAGGGATCCCTGGTaGCCCAGGAGCTCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: SGICPFKATLEAKKAQAESRDPW*PRSSLW
Trigger: CCACAGGGAGCTCCTGGGCCACCAGGGATCCCTGGA...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TCCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTGCATGTCCATTTGCAAGGCTCCAGGGATCCCTaGTGGCCCAGGAGCTCCCTG +
Preference number: 4 (lower is better)
Translates to: SSLQAGTGHSMALHVHLQGSRDP*WPRSSL
Trigger: CAGGGAGCTCCTGGGCCACCAGGGATCCCTGGAGCC...TTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp AGAACATGGTCTGCTGCTTTTTGCCAGCTCCTCAGGGGGACAGAGGTAGGGACTGGGGCCCACAGGACATaGCTGGTCAAGGCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: RTWSAAFCQLLRGTEVGTGAHRT*LVKAWW
Trigger: CCACCAGGCCTTGACCAGCCATGTCCTGTGGGCCCC...AGTCCCTACCTCTGTCCCCCTGAGGAGCTGGCAAAAAGCAGCAGACCATGTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp TTCCTGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCAACAGGCGCTCCAGGTaGGTTTCGGCCCAGGCGGCC +
Preference number: 4 (lower is better)
Translates to: FLCRLSRGWLAHLQMLHGNRRSR*VSAQAA
Trigger: GGCCGCCTGGGCCGAAACGCACCTGGAGCGCCTGTT...GCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp AGGAAGTGGCAGCATGTGACTCTGAAGGCTTGGTCATATGAGGTGACACAGCTTGGACCCGCTGGGCCTTaGGCTCCTCGGGGGCCATCT +
Preference number: 4 (lower is better)
Translates to: RKWQHVTLKAWSYEVTQLGPAGP*APRGPS
Trigger: AGATGGCCCCCGAGGAGCGCAAGGCCCAGCGGGTCC...AAGCTGTGTCACCTCATATGACCAAGCCTTCAGAGTCACATGCTGCCACTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR TCA 90 bp TCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCACAGGCTGAAAGCACCCGGAAGACCTaGCAGGCCCATCTCTCCTGT +
Preference number: 4 (lower is better)
Translates to: SGICPFKATLEAKKAQAESTRKT*QAHLSC
Trigger: ACAGGAGAGATGGGCCTGTCAGGTCTTCCGGGTGCT...TTCAGCCTGTGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTGCTGGACTCTAGGAATCCCAGGGAGTCCTGGCTaGTTGGCCATCCCATCATCC +
Preference number: 4 (lower is better)
Translates to: PSSGSSHCLLPKCWTLGIPGSPG*LAIPSS
Trigger: GGATGATGGGATGGCCAACCAGCCAGGACTCCCTGG...GATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGGCCTCCTTTTGGTCCTTTaGGACCCTTCTCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: ACPHSCWLPVQIVQGLVGLLLVL*DPSLHR
Trigger: TCGATGGAGAGAAGGGTCCCAAAGGACCAAAAGGAG...GCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACACCCGGCTCTCCCTTCTaGCCCTTCACGCCTTTCCGG +
Preference number: 4 (lower is better)
Translates to: CADCPGAGWHTCKCYMATPGSPF*PFTPFR
Trigger: CCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGG...TGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
3UTR CAA 72 bp TTCTTGGTAGGGAGAACCAAGGCCTCCTCTCAGTCCTaGAGCCTCATTGTTGAGGCAGGGCACTCCCCAGCG +
Preference number: 4 (lower is better)
Translates to: FLVGRTKASSQS*SLIVEAGHSPA
Trigger: CGCTGGGGAGTGCCCTGCCTCAACAATGAGGCTCAAGGACTGAGAGGAGGCCTTGGTTCTCCCTACCAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TCTCCATTTTCTGGCATCTGTCCTTTCAAGGCAACCCTGGAGGCCAAGAAGGCATTCCCCTTTGGGGCCTaGAAGTCCGGGCTTGCCGTC +
Preference number: 4 (lower is better)
Translates to: SPFSGICPFKATLEAKKAFPFGA*KSGLAV
Trigger: GACGGCAAGCCCGGACTTCCAGGCCCCAAAGGGGAA...TGCCTTCTTGGCCTCCAGGGTTGCCTTGAAAGGACAGATGCCAGAAAATGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTGCTGGACTCTAGGAATCTTCTCCCTTGGGTCCTaGAGGTCCTTTGGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: PSSGSSHCLLPKCWTLGIFSLGS*RSFGAH
Trigger: ATGGGCCCCAAAGGACCTCCAGGACCCAAGGGAGAA...GATTCCTAGAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGGGTCCAGGGAGTCCTaGCTGGTTGGCCATCCCATC +
Preference number: 4 (lower is better)
Translates to: CADCPGAGWHTCKCYMATGSRES*LVGHPI
Trigger: GATGGGATGGCCAACCAGCCAGGACTCCCTGGACCC...TGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp AGAACATGGTCTGCTGCTTTTTGCCAGCTCCTCAGGGGGACAGAGGTAGGGACTCAACCCAATAAGGCCTaGTGGGCCAACTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: RTWSAAFCQLLRGTEVGTQPNKA*WANWSR
Trigger: CCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTG...AGTCCCTACCTCTGTCCCCCTGAGGAGCTGGCAAAAAGCAGCAGACCATGTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GCTCTGCGTGCTGTCCACCCATCGTCAGGGGTCTGCCTAGCAGATTCCATATGTGAACCCATCGAGTCCTaGTTCTCCAGGTCTGCCCTT +
Preference number: 4 (lower is better)
Translates to: ALRAVHPSSGVCLADSICEPIES*FSRSAL
Trigger: AAGGGCAGACCTGGAGAACCAGGACTCGATGGGTTC...ACATATGGAATCTGCTAGGCAGACCCCTGACGATGGGTGGACAGCACGCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGCACCCTTCTCTCCCCTaGGTCCAGGGAACCCATCGA +
Preference number: 4 (lower is better)
Translates to: VQIVQGLVGTLANVTWPQHPSLP*VQGTHR
Trigger: TCGATGGGTTCCCTGGACCCAGGGGAGAGAAGGGTG...CTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
CDS-3UTR CCA 90 bp CAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGTCCACAGGACATGGCTaGTCAAGGCCTGGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: QIVQGLVGTLANVTWPQLSTGHG*SRPGGP
Trigger: GGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGA...CAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
3UTR CAA 72 bp GAATGCATGTGTACAGTCTGGGGAGTGTGGCCCTCCTaGGATCTCTGCCCTTGGAGGAAGGGGACAGAGACA +
Preference number: 4 (lower is better)
Translates to: ECMCTVWGVWPS*DLCPWRKGTET
Trigger: TGTCTCTGTCCCCTTCCTCCAAGGGCAGAGATCCAAGGAGGGCCACACTCCCCAGACTGTACACATGCATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR TCA 90 bp TTCCTGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCGTAGCCATCTCGTCCTaGTTGCCCTGGAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: FLCRLSRGWLAHLQMLHGVAISS*LPWRTR
Trigger: CCTGGTCCTCCAGGGCAATCAGGACGAGATGGCTAC...GCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TCAGTTTGCTGTAAGGACAAGTTAGGGGGAGACATGGGCCCACTCTGCAGGACCCTCTCCATCGATTCCTaGAGCACCAGGCAATCCGAG +
Preference number: 4 (lower is better)
Translates to: SVCCKDKLGGDMGPLCRTLSIDS*STRQSE
Trigger: CTCGGATTGCCTGGTGCTCCAGGAATCGATGGAGAG...GGTCCTGCAGAGTGGGCCCATGTCTCCCCCTAACTTGTCCTTACAGCAAACTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TGTGGTTTATTACTCATGGCGCCTTTACATGAGGAGGGCTGTGAAGCCATGAATCCCTTTGGGCCCAGCTaGTCCAGGCTCTCCCGGGTC +
Preference number: 4 (lower is better)
Translates to: CGLLLMAPLHEEGCEAMNPFGPS*SRLSRV
Trigger: GACCCGGGAGAGCCTGGACCAGCTGGGCCCAAAGGG...ATTCATGGCTTCACAGCCCTCCTCATGTAAAGGCGCCATGAGTAATAAACCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GAACAGAAGTTTCCTCAGAGCAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCACTCCCTTTTCTCCCTTaGGACCATCAGCACCCGGAA +
Preference number: 4 (lower is better)
Translates to: EQKFPQSSLSAFLLASCALPFLP*DHQHPE
Trigger: TTCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAG...TGCACAGGAAGCCAGCAGGAATGCGGACAGGCTGCTCTGAGGAAACTTCTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACACACCCTTCTCTCCCCTaGGTCCAGGGAACCCATCGA +
Preference number: 4 (lower is better)
Translates to: CADCPGAGWHTCKCYMATHPSLP*VQGTHR
Trigger: TCGATGGGTTCCCTGGACCCAGGGGAGAGAAGGGTG...TGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
CDS-3UTR CCA 90 bp GTCTTTGCTGAGCATAACAAAAGGGGATACAGAGGACTCAGTGACAGGATGTGGCCCGGCTCTCCCTTCTaGCCCTTCACGCCTTTCCGG +
Preference number: 4 (lower is better)
Translates to: VFAEHNKRGYRGLSDRMWPGSPF*PFTPFR
Trigger: CCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGG...CCACATCCTGTCACTGAGTCCTCTGTATCCCCTTTTGTTATGCTCAGCAAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GTGGGTCTGTCTTCTAATTCAAGTGGGGTAAATTTCTGGCTCTGGCAGGAAGTGCCCACAGGACATGGCTaGTCAAGGCCTGGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: VGLSSNSSGVNFWLWQEVPTGHG*SRPGGP
Trigger: GGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGG...CACTTCCTGCCAGAGCCAGAAATTTACCCCACTTGAATTAGAAGACAGACCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 72 bp CAGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATaGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTA +
Preference number: 4 (lower is better)
Translates to: QPVRIPAGFLCR*SRGWLAHLQML
Trigger: TAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
CDS-3UTR CCA 90 bp CAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGCTCCATCCAGGCCCTTaGGACCTTGGATCCCCTGAA +
Preference number: 4 (lower is better)
Translates to: QIVQGLVGTLANVTWPQLLHPGP*DLGSPE
Trigger: TTCAGGGGATCCAAGGTCCCAAGGGCCTGGATGGAG...CAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp AGGAAGTGGCAGCATGTGACTCTGAAGGCTTGGTCATATGAGGTGACACAGCTTCCCAATAAGGCCTGGTaGGCCAACTGGTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RKWQHVTLKAWSYEVTQLPNKAW*ANWSRQ
Trigger: CTGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGG...AAGCTGTGTCACCTCATATGACCAAGCCTTCAGAGTCACATGCTGCCACTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TGTGCAGATTGTCCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAATGTTCCACAGGACATaGCTGGTCAAGGCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: CADCPGAGWHTCKCYMATMFHRT*LVKAWW
Trigger: CCACCAGGCCTTGACCAGCCATGTCCTGTGGAACAT...TGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGGACAATCTGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS-3UTR TCA 90 bp GTTACATGGCCACAGTTGGCGCATCCCATAAAGAAGTTCAATATATTACTGTTTCACCTTGTTCTCCCTTaGGGCCCGGGGCACCCCGGG +
Preference number: 4 (lower is better)
Translates to: VTWPQLAHPIKKFNILLFHLVLP*GPGHPG
Trigger: CCCGGGGTGCCCCGGGCCTCAAGGGAGAACAAGGTG...AAACAGTAATATATTGAACTTCTTTATGGGATGCGCCAACTGTGGCCATGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CTAGGTGGGAGACTTGAGACACAAGTTCTGAACAAGAGGCCTGTCTCCTCCAGGACAGATGCACTCAGATaGGGCTTCTCGAACTGTCCT +
Preference number: 4 (lower is better)
Translates to: LGGRLETQVLNKRPVSSRTDALR*GFSNCP
Trigger: AGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGT...CCTGGAGGAGACAGGCCTCTTGTTCAGAACTTGTGTCTCAAGTCTCCCACCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp GGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGGCGCATCCCATAGGGCATCTAAGATCCTaGCGTCATAGTCGATTACCA +
Preference number: 4 (lower is better)
Translates to: GLVGTLANVTWPQLAHPIGHLRS*RHSRLP
Trigger: TGGTAATCGACTATGACGGCAGGATCTTAGATGCCC...TATGGGATGCGCCAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GTCTTTGCTGAGCATAACAAAAGGGGATACAGAGGACTCAGTGACAGGATGTGGAGGCTCTCTTGTAGATaGTCAGACGCCGACTCTCCC +
Preference number: 4 (lower is better)
Translates to: VFAEHNKRGYRGLSDRMWRLSCR*SDADSP
Trigger: GGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCCT...CCACATCCTGTCACTGAGTCCTCTGTATCCCCTTTTGTTATGCTCAGCAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 72 bp GGCTTGGGAGGCTATGTCACATCTCCAAAGCAGGCATaGTTACCAGTGAGCCACCTTAGTCATCTTGGTCCA +
Preference number: 4 (lower is better)
Translates to: GLGGYVTSPKQA*LPVSHLSHLGP
Trigger: TGGACCAAGATGACTAAGGTGGCTCACTGGTAACAATGCCTGCTTTGGAGATGTGACATAGCCTCCCAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp TTTCTTTTATCTGGTTTCCTAGTTGACCCAGTGTGGCAGAGAACATGGTCTGCTGACCAGGGGGACAGATaGACTCAGATGGGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: FLLSGFLVDPVWQRTWSADQGDR*TQMGLL
Trigger: GAGAAGCCCCATCTGAGTGCATCTGTCCCCCTGGTC...AGCAGACCATGTTCTCTGCCACACTGGGTCAACTAGGAAACCAGATAAAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp TTTCTTTTATCTGGTTTCCTAGTTGACCCAGTGTGGCAGAGAACATGGTCTGCTTGCCAGGTTCTCCCTTaGGTCCTGGAGGTCCTTTGG +
Preference number: 4 (lower is better)
Translates to: FLLSGFLVDPVWQRTWSACQVLP*VLEVLW
Trigger: CCAAAGGACCTCCAGGACCCAAGGGAGAACCTGGCA...AGCAGACCATGTTCTCTGCCACACTGGGTCAACTAGGAAACCAGATAAAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CATGAGTTCAAAACATCCAAACGGATCTGTACAGGTCAGGGGTTATGTCTGAGGTCCCGGGTCTCCTTTTaGTCCTTTGGGACCCTTCTC +
Preference number: 4 (lower is better)
Translates to: HEFKTSKRICTGQGLCLRSRVSF*SFGTLL
Trigger: GAGAAGGGTCCCAAAGGACCAAAAGGAGACCCGGGA...CCTCAGACATAACCCCTGACCTGTACAGATCCGTTTGGATGTTTTGAACTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp GACAGAGACACTGTCATTGACGCTCCTGTCTTTTCTACACACAGGGAAAGAGCTCTCTCCTTTGGTTCCTaGCAACCCAATAAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: DRDTVIDAPVFSTHRERALSFGS*QPNKAW
Trigger: CCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAG...AGCTCTTTCCCTGTGTGTAGAAAAGACAGGAGCGTCAATGACAGTGTCTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGAACAGCTCGCGCTCCTaGTCCAGCGCCGCCACTCGG +
Preference number: 4 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLNSSRS*SSAATR
Trigger: CCGAGTGGCGGCGCTGGAGCAGGAGCGCGAGCTGTT...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CCA 90 bp CTTGCAAATGTTACATGGCCACAGTTGGCGCATCCCATAAAGAAGTTCAATATACTCCTGTTTCCCCTTTaGGCCCAGCTGGTCCAGGCT +
Preference number: 4 (lower is better)
Translates to: LANVTWPQLAHPIKKFNILLFPL*AQLVQA
Trigger: AGCCTGGACCAGCTGGGCCCAAAGGGGAAACAGGAG...TATATTGAACTTCTTTATGGGATGCGCCAACTGTGGCCATGTAACATTTGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR TCA 90 bp GTTACATGGCCACAGTTGGCGCATCCCATAAAGAAGTTCAATATATTACTGTTTGCCCTGGTTCCACTATaGTCTGGGCCAGGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: VTWPQLAHPIKKFNILLFALVPL*SGPGSL
Trigger: AAGAGAGCCTGGCCCAGATCATAGTGGAACCAGGGC...AAACAGTAATATATTGAACTTCTTTATGGGATGCGCCAACTGTGGCCATGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 72 bp CAGAGCTGCAACTTTGGGACCAGCCTAAGTTATGTATaGAGACCCTGTCTCAACCAACAAGCAATCATTCCC +
Preference number: 4 (lower is better)
Translates to: QSCNFGTSLSYV*RPCLNQQAIIP
Trigger: GGGAATGATTGCTTGTTGGTTGAGACAGGGTCTCAATACATAACTTAGGCTGGTCCCAAAGTTGCAGCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR GCA 90 bp TTAACCATAAACCTACCTAAAAGTCCATCTTCCTGCTCAGAAAAGGCCTATCCTCTGGTTCTCCAGGTCTaGCCTTCTCTCCTTTGGTTC +
Preference number: 4 (lower is better)
Translates to: LTINLPKSPSSCSEKAYPLVLQV*PSLLWF
Trigger: GAACCAAAGGAGAGAAGGGCAGACCTGGAGAACCAG...AGGATAGGCCTTTTCTGAGCAGGAAGATGGACTTTTAGGTAGGTTTATGGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 72 bp TCCTGTCTTTTCTACACACAGGGAAAGAGCTTGGTTTaGTCATCTATGAAAATGGGCACATTTGTTGGGCAT +
Preference number: 4 (lower is better)
Translates to: SCLFYTQGKSLV*SSMKMGTFVGH
Trigger: ATGCCCAACAAATGTGCCCATTTTCATAGATGACAAAACCAAGCTCTTTCCCTGTGTGTAGAAAAGACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
3UTR CAA 72 bp ATGTACTCTCCCATATTTTCTCATTTAAACATGACGTaGATACTTTCCTCATTGAGAGGTGGGTCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: MYSPIFSHLNMT*ILSSLRGGSVF
Trigger: GAAGACAGACCCACCTCTCAATGAGGAAAGTATCAACGTCATGTTTAAATGAGAAAATATGGGAGAGTACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp CGCTCCTGCTCCAGCGCCGCCACTCGGCCATGCAGGGCGGCCGCCTaGGCTCCCAACAGGAGACAGGCGGCCGCAGAGCCCACCGACAGC +
Preference number: 5 (lower is better)
Translates to: RSCSSAATRPCRAAA*APNRRQAAAEPTDS
Trigger: GCTGTCGGTGGGCTCTGCGGCCGCCTGTCTCCTGTTGGGAGCCCAGGCGGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGAGCAGGAGCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS GCA 90 bp AGCTTGGCGACTCCATCCAACTTCTCCCGTAACAGGCGCTCCAGGTaGGTTTCGGCCCAGGCGGCCAGGGCTCCGGACGGCCCCGCATGC +
Preference number: 5 (lower is better)
Translates to: SLATPSNFSRNRRSR*VSAQAARAPDGPAC
Trigger: GCATGCGGGGCCGTCCGGAGCCCTGGCCGCCTGGGCCGAAACGCACCTGGAGCGCCTGTTACGGGAGAAGTTGGATGGAGTCGCCAAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp AGGCAACCCATCGGGGCCCACAGGACATGGCTGGTCAAGGCCTGGTaGGCCCGGCTCTCCCTTCTGGCCCTTCACGCCTTTCCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RQPIGAHRTWLVKAW*ARLSLLALHAFPAR
Trigger: CCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGGCCCCGATGGGTTGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp ACAGGACATGGCTGGTCAAGGCCTGGTGGGCCCGGCTCTCCCTTCTaGCCCTTCACGCCTTTCCGGCCAGGAACTCCTCGCTCCCCCTTC +
Preference number: 5 (lower is better)
Translates to: TGHGWSRPGGPGSPF*PFTPFRPGTPRSPF
Trigger: GAAGGGGGAGCGAGGAGTTCCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102765.9
ENSMUST00000151098.2
CDS GCA 90 bp CAGGGCCTGATGCCCTTCACAAGGCCCGGGGAGCCTGGCGCCCCTTaGCTGCCTCCACATCGAGGATGTTCCACAGGACATGGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: QGLMPFTRPGEPGAP*LPPHRGCSTGHGWS
Trigger: TGACCAGCCATGTCCTGTGGAACATCCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCCCCGGGCCTTGTGAAGGGCATCAGGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS CCA 90 bp GCCTCCACATCGAGGATGTTCCACAGGACATGGCTGGTCAAGGCCTaGTGGGCCCGGCTCTCCCTTCTGGCCCTTCACGCCTTTCCGGCC +
Preference number: 5 (lower is better)
Translates to: ASTSRMFHRTWLVKA*WARLSLLALHAFPA
Trigger: GGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGAACATCCTCGATGTGGAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS CCA 90 bp TCCACATCGAGGATGTTCCACAGGACATGGCTGGTCAAGGCCTGGTaGGCCCGGCTCTCCCTTCTGGCCCTTCACGCCTTTCCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: STSRMFHRTWLVKAW*ARLSLLALHAFPAR
Trigger: CCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGAACATCCTCGATGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS-3UTR CAA 90 bp GAGCAAGGCCCTCTTCGGGTTCTTCCCATTGCCTTCTCCCCAAGTGCTGGACTCCCTCTTCGTCCAGGCTaGCCACGCCGTCCAGGGGGA +
Preference number: 5 (lower is better)
Translates to: EQGPLRVLPIAFSPSAGLPLRPG*PRRPGG
Trigger: TCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGG...GAGTCCAGCACTTGGGGAGAAGGCAATGGGAAGAACCCGAAGAGGGCCTTGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp AGGTCTGCCCTTCTCTCCTTTGGTTCCTGGCAACCCAATAAGGCCTaGTGGGCCAACTGGTCCAGGCAGGCCGTGAGGGCCTCTCTCACC +
Preference number: 5 (lower is better)
Translates to: RSALLSFGSWQPNKA*WANWSRQAVRASLT
Trigger: GGTGAGAGAGGCCCTCACGGCCTGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAGGGCAGACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp GGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGGCGCATCCCATGGAGCCTGGCGCCCCTaGCCTGCCTCCACATCGAGG +
Preference number: 5 (lower is better)
Translates to: GAGWHTCKCYMATVGASHGAWRP*PASTSR
Trigger: CCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCC...ATGGGATGCGCCAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS GCA 90 bp GTCCTGGCTGGTTGGCCATCCCATCATCCCCCTTCTTCCCAGGAATaGCAGGTTCTCCCTTGGGTCCTGGAGGTCCTTTGGGGCCCATCT +
Preference number: 5 (lower is better)
Translates to: VLAGWPSHHPPSSQE*QVLPWVLEVLWGPS
Trigger: AGATGGGCCCCAAAGGACCTCCAGGACCCAAGGGAGAACCTGGCATTCCTGGGAAGAAGGGGGATGATGGGATGGCCAACCAGCCAGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp CTTGCCACGCCGTCCAGGGGGACCAGGGGGACAGATGCACTCAGATaGGGCTTCTCGAACTGTCCTGAGCTTGGCGACTCCATCCAACTT +
Preference number: 5 (lower is better)
Translates to: LATPSRGTRGTDALR*GFSNCPELGDSIQL
Trigger: AAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTGGTCCCCCTGGACGGCGTGGCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp ATCGAGTCCTGGTTCTCCAGGTCTGCCCTTCTCTCCTTTGGTTCCTaGCAACCCAATAAGGCCTGGTGGGCCAACTGGTCCAGGCAGGCC +
Preference number: 5 (lower is better)
Translates to: IESWFSRSALLSFGS*QPNKAWWANWSRQA
Trigger: GGCCTGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAGGGCAGACCTGGAGAACCAGGACTCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp GTCGCTTCTCTCAAGCCTCAGAGCCATCTGTCCATGGGGACAGTCATCTCGTTGGCCCATCTCGCCATCTaGTCCGGGCTCTCCTCTGGG +
Preference number: 5 (lower is better)
Translates to: VASLKPQSHLSMGTVISLAHLAI*SGLSSG
Trigger: CCCAGAGGAGAGCCCGGACAAGATGGCGAGATGGGC...CAACGAGATGACTGTCCCCATGGACAGATGGCTCTGAGGCTTGAGAGAAGCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp AGCCTGTCCGCATTCCTGCTGGCTTCCTGTGCAGATTGTCCAGGGGCTGGTTGGTACCACTGTGTCACCTaGTTCTCCCTTGAGGCCCGG +
Preference number: 5 (lower is better)
Translates to: SLSAFLLASCADCPGAGWYHCVT*FSLEAR
Trigger: CCGGGCCTCAAGGGAGAACAAGGTGACACAGTGGTA...CCAACCAGCCCCTGGACAATCTGCACAGGAAGCCAGCAGGAATGCGGACAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS TCA 90 bp GACCAGGGGGACAGATGCACTCAGATGGGGCTTCTCGAACTGTCCTaGGCTTGGCGACTCCATCCAACTTCTCCCGTAACAGGCGCTCCA +
Preference number: 5 (lower is better)
Translates to: DQGDRCTQMGLLELS*AWRLHPTSPVTGAP
Trigger: TGGAGCGCCTGTTACGGGAGAAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 90 bp GGCTCTCTTGTAGATGGTCAGACGCCGACTCTCCCTTTTCTCCCTTaGGACCATCAGCACCCGGAAGACCTGACAGGCCCATCTCTCCTG +
Preference number: 5 (lower is better)
Translates to: GSLVDGQTPTLPFLP*DHQHPEDLTGPSLL
Trigger: CAGGAGAGATGGGCCTGTCAGGTCTTCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp CCAGGGGCTGGTTGGCACACTTGCAAATGTTACATGGCCACAGTTGGCGCATCCATGCCAGGTTCTCCCTaGGGTCCTGGAGGTCCTTTG +
Preference number: 5 (lower is better)
Translates to: PGAGWHTCKCYMATVGASMPGSP*GPGGPL
Trigger: CAAAGGACCTCCAGGACCCAAGGGAGAACCTGGCAT...GGATGCGCCAACTGTGGCCATGTAACATTTGCAAGTGTGCCAACCAGCCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TCCTCACTTCAGGCTGGCACAGGACACTCCATGGCTCTGCATGTCCATTTGCAAGTACCCTTTTCTCCCTaGGCTCCATCCAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: SSLQAGTGHSMALHVHLQVPFSP*APSRPL
Trigger: CAAGGGCCTGGATGGAGCCAAGGGAGAAAAGGGTAC...TTGCAAATGGACATGCAGAGCCATGGAGTGTCCTGTGCCAGCCTGAAGTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TTTCTTTTATCTGGTTTCCTAGTTGACCCAGTGTGGCAGAGAACATGGTCTGCTTCACCTTGTTCTCCCTaGAGGCCCGGGGCACCCCGG +
Preference number: 5 (lower is better)
Translates to: FLLSGFLVDPVWQRTWSASPCSP*RPGAPR
Trigger: CCGGGGTGCCCCGGGCCTCAAGGGAGAACAAGGTGA...AGCAGACCATGTTCTCTGCCACACTGGGTCAACTAGGAAACCAGATAAAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TGTGGTTTATTACTCATGGCGCCTTTACATGAGGAGGGCTGTGAAGCCATGAATCAGGCCCTTGGGACCTaGGATCCCCTGAAGGCCCAT +
Preference number: 5 (lower is better)
Translates to: CGLLLMAPLHEEGCEAMNQALGT*DPLKAH
Trigger: ATGGGCCTTCAGGGGATCCAAGGTCCCAAGGGCCTG...ATTCATGGCTTCACAGCCCTCCTCATGTAAAGGCGCCATGAGTAATAAACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TTATCTCCTACCCTGAATATATCCCCTGATTTAGAGGAAGGTTCTGACCCCCAAAACTCCATCTTGCCCTaGGGCTCCCCGCGGGCCAAA +
Preference number: 5 (lower is better)
Translates to: LSPTLNISPDLEEGSDPQNSILP*GSPRAK
Trigger: TTTGGCCCGCGGGGAGCCCAAGGGCAAGATGGAGTT...TTGGGGGTCAGAACCTTCCTCTAAATCAGGGGATATATTCAGGGTAGGAGATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp AGCAATTTTGAAGGGTACATACAATTCAGTGGCATTAGTACATTCTCAATGTTGGGGACCCGCTGGGCCTaGCGCTCCTCGGGGGCCATC +
Preference number: 5 (lower is better)
Translates to: SNFEGYIQFSGISTFSMLGTRWA*RSSGAI
Trigger: GATGGCCCCCGAGGAGCGCAAGGCCCAGCGGGTCCC...CAACATTGAGAATGTACTAATGCCACTGAATTGTATGTACCCTTCAAAATTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp GACAGAGACACTGTCATTGACGCTCCTGTCTTTTCTACACACAGGGAAAGAGCTAATCCGAGTTCACCCTaGGCTCCAGGGATCCCTGGT +
Preference number: 5 (lower is better)
Translates to: DRDTVIDAPVFSTHRERANPSSP*APGIPG
Trigger: ACCAGGGATCCCTGGAGCCAAGGGTGAACTCGGATT...AGCTCTTTCCCTGTGTGTAGAAAAGACAGGAGCGTCAATGACAGTGTCTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp GTTACATGGCCACAGTTGGCGCATCCCATAAAGAAGTTCAATATATTACTGTTTTCTCCTGTTTCCCCTTaGGGCCCAGCTGGTCCAGGC +
Preference number: 5 (lower is better)
Translates to: VTWPQLAHPIKKFNILLFSPVSP*GPAGPG
Trigger: GCCTGGACCAGCTGGGCCCAAAGGGGAAACAGGAGA...AAACAGTAATATATTGAACTTCTTTATGGGATGCGCCAACTGTGGCCATGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TTAACCATAAACCTACCTAAAAGTCCATCTTCCTGCTCAGAAAAGGCCTATCCTCTCCCGGGTCTCCTTTaGGTCCTTTGGGACCCTTCT +
Preference number: 5 (lower is better)
Translates to: LTINLPKSPSSCSEKAYPLPGLL*VLWDPS
Trigger: AGAAGGGTCCCAAAGGACCAAAAGGAGACCCGGGAG...AGGATAGGCCTTTTCTGAGCAGGAAGATGGACTTTTAGGTAGGTTTATGGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS-3UTR CAA 90 bp TTAACCATAAACCTACCTAAAAGTCCATCTTCCTGCTCAGAAAAGGCCTATCCTTCTCCCTTTTCTCCCTaGGGACCATCAGCACCCGGA +
Preference number: 5 (lower is better)
Translates to: LTINLPKSPSSCSEKAYPSPFSP*GPSAPG
Trigger: TCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAGA...AGGATAGGCCTTTTCTGAGCAGGAAGATGGACTTTTAGGTAGGTTTATGGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS GCA 72 bp CCGGACGGCCCCGCATGCCGCAACAGCTCGCGCTCCTaGTCCAGCGCCGCCACTCGGCCATGCAGGGCGGCC +
Preference number: 6 (lower is better)
Translates to: PDGPACRNSSRS*SSAATRPCRAA
Trigger: GGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGAGCAGGAGCGCGAGCTGTTGCGGCATGCGGGGCCGTCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp TCCAGCGCCGCCACTCGGCCATGCAGGGCGGCCGCCTaGGCTCCCAACAGGAGACAGGCGGCCGCAGAGCCC +
Preference number: 6 (lower is better)
Translates to: SSAATRPCRAAA*APNRRQAAAEP
Trigger: GGGCTCTGCGGCCGCCTGTCTCCTGTTGGGAGCCCAGGCGGCCGCCCTGCATGGCCGAGTGGCGGCGCTGGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS TCA 72 bp GCACAGGCAACCCATCGGGGCCCACAGGGCAGGGCCTaGTGCCCTTCACAAGGCCCGGGGAGCCTGGCGCCC +
Preference number: 6 (lower is better)
Translates to: AQATHRGPQGRA*CPSQGPGSLAP
Trigger: GGGCGCCAGGCTCCCCGGGCCTTGTGAAGGGCATCAGGCCCTGCCCTGTGGGCCCCGATGGGTTGCCTGTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS GCA 72 bp GGTCCAGGAGGCCCCGGTGGTCCTGCAACTCCATCTTaGCCTTGGGCTCCCCGCGGGCCAAAGTCTCCCGGT +
Preference number: 6 (lower is better)
Translates to: GPGGPGGPATPS*PWAPRGPKSPG
Trigger: ACCGGGAGACTTTGGCCCGCGGGGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 72 bp TGCCCTGGAGGACCAGGGTCGCCTCTTCGTCCAGGCTaGCCACGCCGTCCAGGGGGACCAGGGGGACAGATG +
Preference number: 6 (lower is better)
Translates to: CPGGPGSPLRPG*PRRPGGPGGQM
Trigger: CATCTGTCCCCCTGGTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGGCGACCCTGGTCCTCCAGGGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 72 bp TGGTCCAGGAGGCCCCGGTGGTCCTGCAACTCCATCTaGCCCTTGGGCTCCCCGCGGGCCAAAGTCTCCCGG +
Preference number: 6 (lower is better)
Translates to: WSRRPRWSCNSI*PLGSPRAKVSR
Trigger: CCGGGAGACTTTGGCCCGCGGGGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 72 bp AGGAGGCCCCGGTGGTCCTGCAACTCCATCTTGCCCTaGGGCTCCCCGCGGGCCAAAGTCTCCCGGTGTACC +
Preference number: 6 (lower is better)
Translates to: RRPRWSCNSILP*GSPRAKVSRCT
Trigger: GGTACACCGGGAGACTTTGGCCCGCGGGGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 72 bp GGGTCCTGGAGGTCCTTTGGGGCCCATCTCGCCATCTaGTCCGGGCTCTCCTCTGGGACCCGCTGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: GSWRSFGAHLAI*SGLSSGTRWAL
Trigger: CAAGGCCCAGCGGGTCCCAGAGGAGAGCCCGGACAAGATGGCGAGATGGGCCCCAAAGGACCTCCAGGACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 90 bp GCAGGGCCTGATGCCCTTCACAAGGCCCGGGGAGCCTGGCGCCCCTaGCCTGCCTCCACATCGAGGATGTTCCACAGGACATGGCTGGTC +
Preference number: 6 (lower is better)
Translates to: AGPDALHKARGAWRP*PASTSRMFHRTWLV
Trigger: GACCAGCCATGTCCTGTGGAACATCCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCCCCGGGCCTTGTGAAGGGCATCAGGCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS CAA 90 bp CGTCCTGATTGCCCTGGAGGACCAGGGTCGCCTCTTCGTCCAGGCTaGCCACGCCGTCCAGGGGGACCAGGGGGACAGATGCACTCAGAT +
Preference number: 6 (lower is better)
Translates to: RPDCPGGPGSPLRPG*PRRPGGPGGQMHSD
Trigger: ATCTGAGTGCATCTGTCCCCCTGGTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGGCGACCCTGGTCCTCCAGGGCAATCAGGACG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS GCA 72 bp CCTTCACAAGGCCCGGGGAGCCTGGCGCCCCTTGCCTaGCTCCACATCGAGGATGTTCCACAGGACATGGCT +
Preference number: 6 (lower is better)
Translates to: PSQGPGSLAPLA*LHIEDVPQDMA
Trigger: AGCCATGTCCTGTGGAACATCCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCCCCGGGCCTTGTGAAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS GCA 72 bp ATGCCCTTCACAAGGCCCGGGGAGCCTGGCGCCCCTTaGCTGCCTCCACATCGAGGATGTTCCACAGGACAT +
Preference number: 6 (lower is better)
Translates to: MPFTRPGEPGAP*LPPHRGCSTGH
Trigger: ATGTCCTGTGGAACATCCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCCCCGGGCCTTGTGAAGGGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS CCA 72 bp CCGTCCAGGGGGACCAGGGGGACAGATGCACTCAGATaGGGCTTCTCGAACTGTCCTGAGCTTGGCGACTCC +
Preference number: 6 (lower is better)
Translates to: PSRGTRGTDALR*GFSNCPELGDS
Trigger: GGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCCTGGTCCCCCTGGACGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS TCA 72 bp ATAAGGCCTGGTGGGCCAACTGGTCCAGGCAGGCCGTaGGGGCCTCTCTCACCCGATGTACCCTTTTCTCCC +
Preference number: 6 (lower is better)
Translates to: IRPGGPTGPGRP*GPLSPDVPFSP
Trigger: GGGAGAAAAGGGTACATCGGGTGAGAGAGGCCCTCACGGCCTGCCTGGACCAGTTGGCCCACCAGGCCTTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp CTCTCCTTTGGTTCCTGGCAACCCAATAAGGCCTGGTaGGCCAACTGGTCCAGGCAGGCCGTGAGGGCCTCT +
Preference number: 6 (lower is better)
Translates to: LSFGSWQPNKAW*ANWSRQAVRAS
Trigger: AGAGGCCCTCACGGCCTGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp CTTCTCTCCTTTGGTTCCTGGCAACCCAATAAGGCCTaGTGGGCCAACTGGTCCAGGCAGGCCGTGAGGGCC +
Preference number: 6 (lower is better)
Translates to: LLSFGSWQPNKA*WANWSRQAVRA
Trigger: GGCCCTCACGGCCTGCCTGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp AGGATGTTCCACAGGACATGGCTGGTCAAGGCCTGGTaGGCCCGGCTCTCCCTTCTGGCCCTTCACGCCTTT +
Preference number: 6 (lower is better)
Translates to: RMFHRTWLVKAW*ARLSLLALHAF
Trigger: AAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTGGAACATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151098.2
CDS CAA 90 bp GGGGGACAGATGCACTCAGATGGGGCTTCTCGAACTGTCCTGAGCTaGGCGACTCCATCCAACTTCTCCCGTAACAGGCGCTCCAGGTGC +
Preference number: 6 (lower is better)
Translates to: GGQMHSDGASRTVLS*ATPSNFSRNRRSRC
Trigger: GCACCTGGAGCGCCTGTTACGGGAGAAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS GCA 72 bp GGTTGGCCATCCCATCATCCCCCTTCTTCCCAGGAATaGCAGGTTCTCCCTTGGGTCCTGGAGGTCCTTTGG +
Preference number: 6 (lower is better)
Translates to: GWPSHHPPSSQE*QVLPWVLEVLW
Trigger: CCAAAGGACCTCCAGGACCCAAGGGAGAACCTGGCATTCCTGGGAAGAAGGGGGATGATGGGATGGCCAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp GTAGATGGTCAGACGCCGACTCTCCCTTTTCTCCCTTaGGACCATCAGCACCCGGAAGACCTGACAGGCCCA +
Preference number: 6 (lower is better)
Translates to: VDGQTPTLPFLP*DHQHPEDLTGP
Trigger: TGGGCCTGTCAGGTCTTCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp CTTCTCTCCCCTGGGTCCAGGGAACCCATCGAGTCCTaGTTCTCCAGGTCTGCCCTTCTCTCCTTTGGTTCC +
Preference number: 6 (lower is better)
Translates to: LLSPGSREPIES*FSRSALLSFGS
Trigger: GGAACCAAAGGAGAGAAGGGCAGACCTGGAGAACCAGGACTCGATGGGTTCCCTGGACCCAGGGGAGAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 90 bp GGGAACCCATCGAGTCCTGGTTCTCCAGGTCTGCCCTTCTCTCCTTaGGTTCCTGGCAACCCAATAAGGCCTGGTGGGCCAACTGGTCCA +
Preference number: 6 (lower is better)
Translates to: GNPSSPGSPGLPFSP*VPGNPIRPGGPTGP
Trigger: TGGACCAGTTGGCCCACCAGGCCTTATTGGGTTGCCAGGAACCAAAGGAGAGAAGGGCAGACCTGGAGAACCAGGACTCGATGGGTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CAA 90 bp AGGCTCTCTTGTAGATGGTCAGACGCCGACTCTCCCTTTTCTCCCTaGGGACCATCAGCACCCGGAAGACCTGACAGGCCCATCTCTCCT +
Preference number: 6 (lower is better)
Translates to: RLSCRWSDADSPFSP*GPSAPGRPDRPISP
Trigger: AGGAGAGATGGGCCTGTCAGGTCTTCCGGGTGCTGATGGTCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS CCA 72 bp GGTTCCACTATGATCTGGGCCAGGCTCTCTTGTAGATaGTCAGACGCCGACTCTCCCTTTTCTCCCTTGGGA +
Preference number: 6 (lower is better)
Translates to: GSTMIWARLSCR*SDADSPFSPLG
Trigger: TCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCCTGGCCCAGATCATAGTGGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS TCA 72 bp GACAGATGCACTCAGATGGGGCTTCTCGAACTGTCCTaGGCTTGGCGACTCCATCCAACTTCTCCCGTAACA +
Preference number: 6 (lower is better)
Translates to: DRCTQMGLLELS*AWRLHPTSPVT
Trigger: TGTTACGGGAGAAGTTGGATGGAGTCGCCAAGCTCAGGACAGTTCGAGAAGCCCCATCTGAGTGCATCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9
CDS GCA 72 bp GTGGTCCAGGGGGACCCTTTAGGGCATCTAAGATCCTaGCGTCATAGTCGATTACCACTGTGTCACCTTGTT +
Preference number: 6 (lower is better)
Translates to: VVQGDPLGHLRS*RHSRLPLCHLV
Trigger: AACAAGGTGACACAGTGGTAATCGACTATGACGGCAGGATCTTAGATGCCCTAAAGGGTCCCCCTGGACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102765.9