RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL1A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001506

Ensembl transcript IDs: ENSMUST00000001547.8

Found 172 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTaGTGTGACCCTGCCTGGCTCCAAACCCCTGAGAGGGGCAGGTGG +
Preference number: 1 (lower is better)
Translates to: VSPTQPAHACPMFPV*CDPAWLQTPERGRW
Trigger: CCACCTGCCCCTCTCAGGGGTTTGGAGCCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR TCA 90 bp ACACAAAGACAAGAACGAGGTAGTCTTTCAGCAACACAATTGCACTaGGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTC +
Preference number: 1 (lower is better)
Translates to: TQRQERGSLSATQLH*GIERSLPPSLHMHV
Trigger: GACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGTGTTGCTGAAAGACTACCTCGTTCTTGTCTTTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGAAAAGTGGGCTGGGTaGGAGGGAACCAGATTGGGG +
Preference number: 2 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPREKWAG*EGTRLG
Trigger: CCCCAATCTGGTTCCCTCCCACCCAGCCCACTTTTC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR TCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGCAACACAATTGCACTaGGGAATAGAACGGTCTCTC +
Preference number: 2 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRATQLH*GIERSL
Trigger: GAGAGACCGTTCTATTCCTCAGTGCAATTGTGTTGC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCAGGGTTGGGGAAAAGTaGGCTGGGTGGGAGGGAACC +
Preference number: 2 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPRVGEK*AGWEGT
Trigger: GGTTCCCTCCCACCCAGCCCACTTTTCCCCAACCCT...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR GCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCCGCCCCCACACAGTTaGCCCGGTGACACACAAAGA +
Preference number: 2 (lower is better)
Translates to: REQQQEGRVSEERERSDRPPPHS*PGDTQR
Trigger: TCTTTGTGTGTCACCGGGGCAACTGTGTGGGGGCGG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGAAATTTGGGGAGCAATaGAGGAGAGGCCCCAAGAGG +
Preference number: 2 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLKFGEQ*RRGPKR
Trigger: CCTCTTGGGGCCTCTCCTCCATTGCTCCCCAAATTT...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCTTATTTCCTGTGTCTTaGGGGAGACTTAAATTTGGG +
Preference number: 2 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRLFPVS*GRLKFG
Trigger: CCCAAATTTAAGTCTCCCCCAAGACACAGGAAATAA...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTGGGTTGAGGGGCTGGTaGGACATTTCAGCATTGCCT +
Preference number: 2 (lower is better)
Translates to: TIALRNRTVSPTQPAHACGLRGW*DISALP
Trigger: AGGCAATGCTGAAATGTCCCACCAGCCCCTCAACCC...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR CAA 90 bp GTACAGAGTCTCTTGTTTCCTCCCAGCCCAGGGGTAAAAACTGTTTaGTGCTTTGGAAAGTGGTGCTCTGAAACCCTGATGCAGGACAGA +
Preference number: 2 (lower is better)
Translates to: VQSLLFPPSPGVKTV*CFGKWCSETLMQDR
Trigger: TCTGTCCTGCATCAGGGTTTCAGAGCACCACTTTCCAAAGCACAAAACAGTTTTTACCCCTGGGCTGGGAGGAAACAAGAGACTCTGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGATTGCCTTTGTTTGCTaGGCAGACAATGCATTATTT +
Preference number: 2 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLIAFVC*ADNALF
Trigger: AAATAATGCATTGTCTGCCCAGCAAACAAAGGCAAT...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCATGGAGATGCCAGATaGTTAGGTTCCTTCAACAGT +
Preference number: 2 (lower is better)
Translates to: REQQQEGRVSEERERSDRHGDAR*LGSFNS
Trigger: ACTGTTGAAGGAACCTAACCATCTGGCATCTCCATG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR GCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTAGCATTGCCTTTGTTTaGTGGGCAGACAATGCATTA +
Preference number: 2 (lower is better)
Translates to: TIALRNRTVSPTQPAHACSIAFV*WADNAL
Trigger: TAATGCATTGTCTGCCCAGCAAACAAAGGCAATGCT...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCTGCACTTTTGGTTTTTaGTCACGTTCAGTTGGTCAA +
Preference number: 2 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPCTFGF*SRSVGQ
Trigger: TTGACCAACTGAACGTGACCAAAAACCAAAAGTGCA...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR GCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTTTTGGTAAGGTTGAATaGACTTTTGGTTTTTGGTCA +
Preference number: 2 (lower is better)
Translates to: TIALRNRTVSPTQPAHACFGKVE*TFGFWS
Trigger: TGACCAAAAACCAAAAGTGCATTCAACCTTACCAAA...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CCA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCTTGGTCACGTTCAGTTaGTCAAAGGTAAAAACTAAG +
Preference number: 2 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEALVTFS*SKVKTK
Trigger: CTTAGTTTTTACCTTTGACCAACTGAACGTGACCAA...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCGTCTGTTTCCAGGGTaGGGGAAAAGTGGGCTGGGT +
Preference number: 3 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRRLFPG*GKSGLG
Trigger: ACCCAGCCCACTTTTCCCCAACCCTGGAAACAGACG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR GCA 72 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTaGTGTGACCCTGCCTGGCTCCAAACCCCTGAGAGG +
Preference number: 3 (lower is better)
Translates to: TQPAHACPMFPV*CDPAWLQTPER
Trigger: CCTCTCAGGGGTTTGGAGCCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGATGTCCCAGCAGGATTaGAGGGTGCTGGGTAGGGAA +
Preference number: 3 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWMSQQD*RVLGRE
Trigger: TTCCCTACCCAGCACCCTCAAATCCTGCTGGGACAT...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCAGCATTGCCTTTGTTaGCTGGGCAGACAATGCATT +
Preference number: 3 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRQHCLC*LGRQCI
Trigger: AATGCATTGTCTGCCCAGCAAACAAAGGCAATGCTG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGGGGGGAGACTTAAATTaGGGGAGCAATGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLGGDLN*GSNGGE
Trigger: CTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCC...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCATTTCAGCATTGCCTTaGTTTGCTGGGCAGACAATG +
Preference number: 3 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRISALP*FAGQTM
Trigger: CATTGTCTGCCCAGCAAACAAAGGCAATGCTGAAAT...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGTGGGACATTTCAGCATaGCCTTTGTTTGCTGGGCAG +
Preference number: 3 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWWDISA*PLFAGQ
Trigger: CTGCCCAGCAAACAAAGGCAATGCTGAAATGTCCCA...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCTGGGGGAAATTGAGTTaGGGTTGTTCGTCTGTTTCC +
Preference number: 3 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAWGKLS*GCSSVS
Trigger: GGAAACAGACGAACAACCCAAACTCAATTTCCCCCA...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR TCA 72 bp CAAGAACGAGGTAGTCTTTCAGCAACACAATTGCACTaGGGAATAGAACGGTCTCTCCCACCCAGCCTGCAC +
Preference number: 3 (lower is better)
Translates to: QERGSLSATQLH*GIERSLPPSLH
Trigger: GTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGTGTTGCTGAAAGACTACCTCGTTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR GCA 72 bp GAGGGGCTGGTGGGACATTTCAGCATTGCCTTTGTTTaGTGGGCAGACAATGCATTATTTCCTGTGTCTTGG +
Preference number: 3 (lower is better)
Translates to: EGLVGHFSIAFV*WADNALFPVSW
Trigger: CCAAGACACAGGAAATAATGCATTGTCTGCCCAGCAAACAAAGGCAATGCTGAAATGTCCCACCAGCCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCAGGTTGAATGCACTTTaGGTTTTTGGTCACGTTCAG +
Preference number: 3 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPRLNAL*VFGHVQ
Trigger: CTGAACGTGACCAAAAACCAAAAGTGCATTCAACCT...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCCATATTTTTGGCTTTaGGGGGAAATTGAGTTTGGG +
Preference number: 3 (lower is better)
Translates to: REQQQEGRVSEERERSDRPYFWL*GEIEFG
Trigger: CCCAAACTCAATTTCCCCCAAAAGCCAAAAATATGG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR-3UTR CAA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTATGCACTTTTGGTTTTaGGTCACGTTCAGTTGGTCA +
Preference number: 3 (lower is better)
Translates to: TIALRNRTVSPTQPAHACMHFWF*VTFSWS
Trigger: TGACCAACTGAACGTGACCAAAAACCAAAAGTGCAT...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGCCAACGGGTCCCCTTaGGCCTTGGGGGCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRANGSP*ALGARV
Trigger: GACCCTGGCCCCCAAGGCCCAAGGGGACCCGTTGGC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGGGCCAGGGGCTCCCTaGGCTCCAGCTTCTCCATCT +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRGPGAP*APASPS
Trigger: AGATGGAGAAGCTGGAGCTCAGGGAGCCCCTGGCCC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCTCACCAGGCATTCCCTaGAGACCGGGGGCACCCTGG +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRSPGIP*RPGAPW
Trigger: CCAGGGTGCCCCCGGTCTTCAGGGAATGCCTGGTGA...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGGACCTGGAGGGCCGCTaGGGCCCTGGGGTCCAGAGG +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLDLEGR*GPGVQR
Trigger: CCTCTGGACCCCAGGGCCCCAGCGGCCCTCCAGGTC...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCTCACCACGGGGGCCTTaGGGTCCAGCAGGGCCACGG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIASPRGP*GPAGPR
Trigger: CCGTGGCCCTGCTGGACCCCAAGGCCCCCGTGGTGA...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGGCCAGGGAGACCGTTaGGTCCGTCTTTGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRGQGDR*VRLCQE
Trigger: CTCCTGGCAAAGACGGACTCAACGGTCTCCCTGGCC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGCGCGAGCACCAGCAGTaGCAGGAGGTCCAGGGCGAC +
Preference number: 4 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWREHQQ*QEVQGD
Trigger: GTCGCCCTGGACCTCCTGGCACTGCTGGTGCTCGCG...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGGCCGCTGTCACCAGTaGGACCTCGAGGACCAGGGG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAGRCHQ*DLEDQG
Trigger: CCCCTGGTCCTCGAGGTCGCACTGGTGACAGCGGCC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGGTCCCCTTGGGCCTTaGGGGCCAGGGTCTCCCTTG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAGPLGP*GPGSPL
Trigger: CAAGGGAGACCCTGGCCCCCAAGGCCCAAGGGGACC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCACCACTGTTACCCTTaGGACCTGGAGGGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRHHCYP*DLEGRW
Trigger: CCAGCGGCCCTCCAGGTCCCAAGGGTAACAGTGGTG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGCCTTGGAAACCTTGTaGACCAGGTGCACCAGGGGG +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRALETL*TRCTRG
Trigger: CCCCCTGGTGCACCTGGTCCACAAGGTTTCCAAGGC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCCCCATCACACCAGCCTaGCCACGGGCTCCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAPITPA*PRAPGG
Trigger: TCCTCCTGGAGCCCGTGGCCAGGCTGGTGTGATGGG...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGAATCCACGAGCACCCTaGGGTCCAGGAGGTCCACGC +
Preference number: 4 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWNPRAP*GPGGPR
Trigger: GCGTGGACCTCCTGGACCTCAGGGTGCTCGTGGATT...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCTGCCAGGACTGCCAGTaGGACCCTTGGCACCAGGGA +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIACQDCQ*DPWHQG
Trigger: TCCCTGGTGCCAAGGGTCTCACTGGCAGTCCTGGCA...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCACCCTTAGCACCAACTaGACCAGGGAAGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRTLSTN*TREARR
Trigger: CCTCCTGGCTTCCCTGGTGCAGTTGGTGCTAAGGGT...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCTCACCACGCACACCCTaGGGACCTTCAGAGCCTCTA +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRSPRTP*GPSEPL
Trigger: TAGAGGCTCTGAAGGTCCCCAGGGTGTGCGTGGTGA...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGGACCAGGAAGACCCTaGAATCCAGGGGAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAGPGRP*NPGEPA
Trigger: CGCTGGCTCCCCTGGATTCCAGGGTCTTCCTGGTCC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTAGACCGGGGGCACCCTaGCTACCGGGAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACRPGAP*LPGAPG
Trigger: CCCCGGAGCTCCCGGTAGCCAGGGTGCCCCCGGTCT...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCTGCGGGCAGGGTTCTTaGGGCTGCCTTCGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPCGQGS*GCLRGC
Trigger: GCAGCCCCGAAGGCAGCCGCAAGAACCCTGCCCGCA...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGACCGGGAGGACCACTaGGACCAGCTTCACCCTTGT +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIADREDH*DQLHPC
Trigger: ACAAGGGTGAAGCTGGTCCCAGTGGTCCTCCCGGTC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGCGCAGGAAGGTCAGCTaGATAGCGACATCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLRRKVS*IATSAG
Trigger: CCCCGCCGATGTCGCTATCCAGCTGACCTTCCTGCG...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCCAGAGAAGCCACGATaGCCCTTTATGCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRPEKPR*PFMPLS
Trigger: TGACAGAGGCATAAAGGGTCATCGTGGCTTCTCTGG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGGGGCCTGCAGGACCTaGAGCTCCAGAGGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRGACRT*SSRGAL
Trigger: CAAGGCCCCTCTGGAGCTTCAGGTCCTGCAGGCCCC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGATGTCTTCTTGGCCATaGGTCAGGAGGGCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWMSSWP*VRRAVA
Trigger: GGCCACTGCCCTCCTGACGCATGGCCAAGAAGACAT...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCAGTGTCTCCTTTGTTaGCAGGAGCACCAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRQCLLC*QEHQVH
Trigger: GTGAACCTGGTGCTCCTGGCAACAAAGGAGACACTG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTCGCCCTCCCGTCTTTaGGGGTTGGGACAGTCCAGT +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLSPSRL*GLGQSS
Trigger: ACTGGACTGTCCCAACCCCCAAAGACGGGAGGGCGA...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTGTTACCCTTGGGACCTaGAGGGCCGCTGGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACVTLGT*RAAGAL
Trigger: CAGGGCCCCAGCGGCCCTCCAGGTCCCAAGGGTAAC...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCCCTTGGGGTTCGGGCTaGTGTACCAGTTCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAPWGSG*CTSSSE
Trigger: CTCAGAAGAACTGGTACATCAGCCCGAACCCCAAGG...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCAGGGAGCCACATCGATaGTGGGCAGGCGGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPREPHR*WAGGRS
Trigger: AGACCTCCCGCCTGCCCATCATCGATGTGGCTCCCT...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTACCTCTCTCGCCTCTTaGGCCAGAGGGTCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACTSLAS*ARGSRG
Trigger: GCCCCTGGACCCTCTGGCGCAAGAGGCGAGAGAGGT...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCGCGTCAGGAGGGCAGTaGCCCCTAAGAGGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPASGGQ*PLRGAG
Trigger: TCCTGCTCCTCTTAGGGGCCACTGCCCTCCTGACGC...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGGAGCCTCTAGCTCCTTaGGGACCAGCTTCACCCTTA +
Preference number: 4 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWEPLAP*GPASPL
Trigger: TAAGGGTGAAGCTGGTCCCCAAGGAGCTAGAGGCTC...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCTCCGAATTCCTGGTCTaGGGCACCAATGTCCAAGGG +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIASEFLV*GTNVQG
Trigger: CCCTTGGACATTGGTGCCCCAGACCAGGAATTCGGA...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTCAGAGTGGCACATCTTaGGGTCGCGGCATGTGCGGG +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACQSGTS*GRGMCG
Trigger: CCCGCACATGCCGCGACCTCAAGATGTGCCACTCTG...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGCAGCTTCTCCATCTTTaGCAGCAGGACCAACAGCGC +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLQLLHL*QQDQQR
Trigger: GCGCTGTTGGTCCTGCTGGCAAAGATGGAGAAGCTG...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCTCTCCAAACCAGACGTaGTTCTTTTCCTTGGGGTTC +
Preference number: 4 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRSPNQT*FFSLGF
Trigger: GAACCCCAAGGAAAAGAAGCACGTCTGGTTTGGAGA...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCCACCGGAAGGACCCTTaGGGCCAGCAACACCATCAG +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPHRKDP*GQQHHQ
Trigger: CTGATGGTGTTGCTGGCCCCAAGGGTCCTTCCGGTG...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGGGACCAGCAGGACCTaGGGGACCTTGTACACCACG +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRGTSRT*GTLYTT
Trigger: CGTGGTGTACAAGGTCCCCCAGGTCCTGCTGGTCCC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGCTCTTCCAGTCAGAGTaGCACATCTTGAGGTCGCGG +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLLFQSE*HILRSR
Trigger: CCGCGACCTCAAGATGTGCCACTCTGACTGGAAGAG...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCTCTGGGAGGCCTCGGTaGACATTAGGCGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPSGRPR*TLGAGR
Trigger: CCTTCCTGCGCCTAATGTCCACCGAGGCCTCCCAGA...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCACCGCGTTCACCACTTaGTCCAGAAGGACCTTGTTT +
Preference number: 4 (lower is better)
Translates to: LGREVDGVEGLVGHFSIATAFTT*SRRTLF
Trigger: AAACAAGGTCCTTCTGGATCAAGTGGTGAACGCGGT...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCCCTTGGCACCATCGTTaGCGGGGGCACCATTGTTTC +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPPWHHR*RGHHCF
Trigger: GAAACAATGGTGCCCCCGGCAACGATGGTGCCAAGG...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTCACCACGGGGACCTTTaGCCCCTTCTTTGCCAACGG +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACHHGDL*PLLCQR
Trigger: CCGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTG...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTCCACGTCTCACCATTaGGGACCCTTAGGCCATTGT +
Preference number: 4 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLSTSHH*GPLGHC
Trigger: ACAATGGCCTAAGGGTCCCCAATGGTGAGACGTGGA...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGACCAGAAGGACCCATaGGGCCAGGCACGGAAACTC +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRDQKDP*GQARKL
Trigger: GAGTTTCCGTGCCTGGCCCCATGGGTCCTTCTGGTC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCTCGGGGACCCATCTaGCCAGGAGCTCCGTTTTCA +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACPRGPI*PGAPFS
Trigger: TGAAAACGGAGCTCCTGGCCAGATGGGTCCCCGAGG...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTAGTCATAACCGCCACTaGGAGGTCCAGGAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACSHNRH*EVQEGQ
Trigger: CTGGCCCTCCTGGACCTCCCAGTGGCGGTTATGACT...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTGCTGACTCAGGCTCTTaGGGGTGGTGTCCACCTCAA +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACADSGS*GWCPPQ
Trigger: TTGAGGTGGACACCACCCTCAAGAGCCTGAGTCAGC...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCTGTTGCAGTAGACCTTaGTGGCGTCCAGGTTGCAGC +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPCCSRP*WRPGCS
Trigger: GCTGCAACCTGGACGCCATCAAGGTCTACTGCAACA...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCCTGTTCACCAGGCTTaGCTGCTTCACCAGGAGGAC +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRPVHQA*LLHQED
Trigger: GTCCTCCTGGTGAAGCAGGCAAGCCTGGTGAACAGG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCCAGAAGGACCTTGTTTaGCAGGTTCACCAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPQKDLV*QVHQRG
Trigger: GCCCCTCTGGTGAACCTGGCAAACAAGGTCCTTCTG...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCACCAGTATCACCCTTaGCACCATCGTTGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAHQYHP*HHRCRG
Trigger: CCCCCGGCAACGATGGTGCCAAGGGTGATACTGGTG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGTCACCCTTAGGACCTaGAAGACCAGCTGCACCACG +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRVTLRT*KTSCTT
Trigger: CGTGGTGCAGCTGGTCTTCCAGGTCCTAAGGGTGAC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTCACCACGAGGACCTTTaGGTCCAGGAGCACCAACGT +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACHHEDL*VQEHQR
Trigger: ACGTTGGTGCTCCTGGACCCAAAGGTCCTCGTGGTG...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCGGAATCCATCGGTCATaGTCTCTCCAAACCAGACGT +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPGIHRS*SLQTRR
Trigger: ACGTCTGGTTTGGAGAGAGCATGACCGATGGATTCC...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCACCGGGTTCTCCTTTaGCACCAGTGTCTCCTTTGT +
Preference number: 4 (lower is better)
Translates to: REQQQEGRVSEERERSDRHRVLL*HQCLLC
Trigger: ACAAAGGAGACACTGGTGCCAAAGGAGAACCCGGTG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTTCCAGGTTGCAGCCTTaGTTAGGGTCGATCCAGTAC +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACSRLQP*LGSIQY
Trigger: GTACTGGATCGACCCTAACCAAGGCTGCAACCTGGA...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CCA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTTCTAGTCCGAATTCCTaGTCTGGGGCACCAATGTCC +
Preference number: 4 (lower is better)
Translates to: TIALRNRTVSPTQPAHACSSPNS*SGAPMS
Trigger: GGACATTGGTGCCCCAGACCAGGAATTCGGACTAGA...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCCATTGTGTATGCAGCTaGCTTCAGGGATGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPHCVCS*LQGCLL
Trigger: AAGAAGACATCCCTGAAGTCAGCTGCATACACAATG...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR GCA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCACGATGACCCTTTATaGCTCTGTCACCTTGTTCGC +
Preference number: 4 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAHDDPL*LCHLVR
Trigger: GCGAACAAGGTGACAGAGGCATAAAGGGTCATCGTG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
3UTR CAA 72 bp CTCTTGTTTCCTCCCAGCCCAGGGGTAAAAACTGTTTaGTGCTTTGGAAAGTGGTGCTCTGAAACCCTGATG +
Preference number: 4 (lower is better)
Translates to: LLFPPSPGVKTV*CFGKWCSETLM
Trigger: CATCAGGGTTTCAGAGCACCACTTTCCAAAGCACAAAACAGTTTTTACCCCTGGGCTGGGAGGAAACAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR TCA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCTGGTTTTGTATTCGATaGCTGTCTTGCCCCAAGTTC +
Preference number: 4 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAWFCIR*LSCPKF
Trigger: GAACTTGGGGCAAGACAGTCATCGAATACAAAACCA...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp GGGGACCAGCCTCACCACGGTCTCCGGGAGCACCACGGGCTCCGGTaGGACCGGGAGGACCACTGGGACCAGCTTCACCCTTGTCACCAG +
Preference number: 5 (lower is better)
Translates to: GDQPHHGLREHHGLR*DREDHWDQLHPCHQ
Trigger: CTGGTGACAAGGGTGAAGCTGGTCCCAGTGGTCCTCCCGGTCCCACCGGAGCCCGTGGTGCTCCCGGAGACCGTGGTGAGGCTGGTCCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp TCTCCAGCGGTACCCTTAGGTCCAGGGAATCCCATCACACCAGCCTaGCCACGGGCTCCAGGAGGACCTGCGGGTCCAGGGCGACCATCT +
Preference number: 5 (lower is better)
Translates to: SPAVPLGPGNPITPA*PRAPGGPAGPGRPS
Trigger: AGATGGTCGCCCTGGACCCGCAGGTCCTCCTGGAGCCCGTGGCCAGGCTGGTGTGATGGGATTCCCTGGACCTAAGGGTACCGCTGGAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGGGCCAACGGGTCCCCTaGGGCCTTGGGGGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLGQRVP*GLGGQG
Trigger: ACCCTGGCCCCCAAGGCCCAAGGGGACCCGTTGGCC...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGGGGCCTTGGAAACCTaGTGGACCAGGTGCACCAGG +
Preference number: 5 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRGALET*WTRCTR
Trigger: CCTGGTGCACCTGGTCCACAAGGTTTCCAAGGCCCC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGTCCAGGGCGACCATCTaGACCAGCGGGACCAGGGGG +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWSRATI*TSGTRG
Trigger: CCCCCTGGTCCCGCTGGTCAAGATGGTCGCCCTGGA...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGGACCAGCTTCACCCTaGTCACCAGGGGCACCAGCA +
Preference number: 5 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRGPASP*SPGAPA
Trigger: TGCTGGTGCCCCTGGTGACAAGGGTGAAGCTGGTCC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp AGGCTCACCACGGGCTCCTCGTTTTCCTTCTTCTCCGGCAGGGCCTaGGGGACCTTGAACTCCAGTAGCACCGGGTTCTCCTTTGGCACC +
Preference number: 5 (lower is better)
Translates to: RLTTGSSFSFFSGRA*GTLNSSSTGFSFGT
Trigger: GGTGCCAAAGGAGAACCCGGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCTGCCGGAGAAGAAGGAAAACGAGGAGCCCGTGGTGAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGGGGCCAGGGTCTCCCTaGGGTCCCTCGACTCCTACA +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWGPGSP*GPSTPT
Trigger: TGTAGGAGTCGAGGGACCCAAGGGAGACCCTGGCCC...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGGACCTCGGGGACCCATaGGACCTGAACCGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWDLGDP*DLNRQA
Trigger: AGCCTGGCGGTTCAGGTCCAATGGGTCCCCGAGGTC...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCTCGCCTGTCTCACCCTaGTCACCACGGGGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: LGREVDGVEGLVGHFSIASPVSP*SPRGPW
Trigger: CCAAGGCCCCCGTGGTGACAAGGGTGAGACAGGCGA...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCAGCTCCAGAGGGGCCTaGTTCACCAGGAGAACCAGG +
Preference number: 5 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRSSRGA*FTRRTR
Trigger: CCTGGTTCTCCTGGTGAACAAGGCCCCTCTGGAGCT...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGCCAGGACGGCCGGGCTaGCCAGCTTCCCCATCATCT +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLPGRPG*PASPSS
Trigger: AGATGATGGGGAAGCTGGCAAGCCCGGCCGTCCTGG...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCGCACCGGGTTCTCCTTaGGCACCAGTGTCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRAPGSP*APVSPL
Trigger: CAAAGGAGACACTGGTGCCAAAGGAGAACCCGGTGC...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGAGGGCCTGGGGGACCTaGAACTCCAGTAGCACCGGG +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLRAWGT*NSSSTG
Trigger: CCCGGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCT...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGGGAGCCAGCGGGACCTaGTTCACCTCTCTCACCAGC +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWGASGT*FTSLTS
Trigger: GCTGGTGAGAGAGGTGAACAAGGTCCCGCTGGCTCC...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGTTGCCGGGGGCACCATaGTTTCCTCGGGGACCAGCA +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWLPGAP*FPRGPA
Trigger: TGCTGGTCCCCGAGGAAACAATGGTGCCCCCGGCAA...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TGTAGCACCTTTGATACCAAACTGGGCGTGCTGCCACCCTGCCCCCATCCCCGCCCAGAAGGACCTTGTTaGCCAGGTTCACCAGAGGGG +
Preference number: 5 (lower is better)
Translates to: CSTFDTKLGVLPPCPHPRPEGPC*PGSPEG
Trigger: CCCCTCTGGTGAACCTGGCAAACAAGGTCCTTCTGG...GCGGGGATGGGGGCAGGGTGGCAGCACGCCCAGTTTGGTATCAAAGGTGCTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 90 bp AGGCCATTGTGTATGCAGCTGACTTCAGGGATGTCTTCTTGGCCATaGGTCAGGAGGGCAGTGGCCCCTAAGAGGAGCAGGAGCCGGAGG +
Preference number: 5 (lower is better)
Translates to: RPLCMQLTSGMSSWP*VRRAVAPKRSRSRR
Trigger: CCTCCGGCTCCTGCTCCTCTTAGGGGCCACTGCCCTCCTGACGCATGGCCAAGAAGACATCCCTGAAGTCAGCTGCATACACAATGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGACCTTTCGCACCAGGTaGGCCATCAGCACCAGGGGG +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLTFRTR*AISTRG
Trigger: CCCCCTGGTGCTGATGGCCAACCTGGTGCGAAAGGT...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGTCAGAGTGGCACATCTaGAGGTCGCGGCATGTGCGG +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWSEWHI*RSRHVR
Trigger: CCGCACATGCCGCGACCTCAAGATGTGCCACTCTGA...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTCACCACGGGGACCTTaGCCCCCTTCTTTGCCAACG +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLSPRGP*PPSLPT
Trigger: CGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTGA...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp ACCCTTAGGCCATTGTGTATGCAGCTGACTTCAGGGATGTCTTCTTaGCCATGCGTCAGGAGGGCAGTGGCCCCTAAGAGGAGCAGGAGC +
Preference number: 5 (lower is better)
Translates to: TLRPLCMQLTSGMSS*PCVRRAVAPKRSRS
Trigger: GCTCCTGCTCCTCTTAGGGGCCACTGCCCTCCTGACGCATGGCCAAGAAGACATCCCTGAAGTCAGCTGCATACACAATGGCCTAAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGAGAGCCTCTAGCTCCTaGGGGACCAGCTTCACCCTT +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLRASSS*GTSFTL
Trigger: AAGGGTGAAGCTGGTCCCCAAGGAGCTAGAGGCTCT...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCATACCAGGAGCACCATaGGCACCTTTAGCGCCAGGT +
Preference number: 5 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAIPGAP*APLAPG
Trigger: ACCTGGCGCTAAAGGTGCCAATGGTGCTCCTGGTAT...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCCCAGTGTCTCCTTTGTaGCCAGGAGCACCAGGTTCA +
Preference number: 5 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAPVSPL*PGAPGS
Trigger: TGAACCTGGTGCTCCTGGCAACAAAGGAGACACTGG...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCGCACCACGAGGACCTTaGGGTCCAGGAGCACCAACG +
Preference number: 5 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPAPRGP*GPGAPT
Trigger: CGTTGGTGCTCCTGGACCCAAAGGTCCTCGTGGTGC...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGTAGCGGCCACCATCTaGAGACTTCTCTTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAVAATI*RLLLRW
Trigger: CCACCTCAAGAGAAGTCTCAAGATGGTGGCCGCTAC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp CTGGGTAGGGAAGTAGACGGGGTTGAGGGGCTGGTGGGACATTTCAGCATTGCCGGCAGGCGGGAGGTCTaGGTGGTTTTGTATTCGATG +
Preference number: 5 (lower is better)
Translates to: LGREVDGVEGLVGHFSIAGRREV*VVLYSM
Trigger: CATCGAATACAAAACCACCAAGACCTCCCGCCTGCC...GGCAATGCTGAAATGTCCCACCAGCCCCTCAACCCCGTCTACTTCCCTACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGCACCAGTATCACCCTaGGCACCATCGTTGCCGGGG +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRAPVSP*APSLPG
Trigger: CCCCGGCAACGATGGTGCCAAGGGTGATACTGGTGC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 90 bp CCCTCCCGTCTTTGGGGGTTGGGACAGTCCAGTTCTTCATTGCATTaGACGTCATCGCACACAGCCGTGCCATTGTGGCAGATACAGATC +
Preference number: 5 (lower is better)
Translates to: PSRLWGLGQSSSSLH*TSSHTAVPLWQIQI
Trigger: GATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAGACGGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp ACGTATTCTTCCGGGCAGAAAGCACAGCACTCGCCCTCCCGTCTTTaGGGGTTGGGACAGTCCAGTTCTTCATTGCATTGCACGTCATCG +
Preference number: 5 (lower is better)
Translates to: TYSSGQKAQHSPSRL*GLGQSSSSLHCTSS
Trigger: CGATGACGTGCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAGACGGGAGGGCGAGTGCTGTGCTTTCTGCCCGGAAGAATACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGGGGACCCTTAGGCCATaGTGTATGCAGCTGACTTCA +
Preference number: 5 (lower is better)
Translates to: NGLSHPACTCMSDVSSLLGTLRP*CMQLTS
Trigger: TGAAGTCAGCTGCATACACAATGGCCTAAGGGTCCC...CAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGTGGGAGAGACCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACCCAGCCTGCACATGCATGTCCGATGTTTCCAGTCTGCTGTGACCCTGCCTGGCAGTCCAGTTCTTCATaGCATTGCACGTCATCGCAC +
Preference number: 5 (lower is better)
Translates to: TQPAHACPMFPVCCDPAWQSSSS*HCTSSH
Trigger: GTGCGATGACGTGCAATGCAATGAAGAACTGGACTG...CCAGGCAGGGTCACAGCAGACTGGAAACATCGGACATGCATGTGCAGGCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCGGGCCAGGGAGACCGTaGAGTCCGTCTTTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAGPGRP*SPSLPG
Trigger: TCCTGGCAAAGACGGACTCAACGGTCTCCCTGGCCC...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCTGAGCTCGATCTCGTaGGATCCCTGGAGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRLSSIS*DPWRSR
Trigger: CCTGCTCCTCCAGGGATCCAACGAGATCGAGCTCAG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCGGACCAGCATCTCCTTaGGCACCATCCAAACCACTG +
Preference number: 5 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPGPASP*APSKPL
Trigger: CAGTGGTTTGGATGGTGCCAAAGGAGATGCTGGTCC...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGGCACCAGTGTCTCCTTaGTTGCCAGGAGCACCAGGT +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRAPVSP*LPGAPG
Trigger: ACCTGGTGCTCCTGGCAACAAAGGAGACACTGGTGC...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTCCAGCTTCTCCATCTTaGCCAGCAGGACCAACAGCG +
Preference number: 5 (lower is better)
Translates to: TIALRNRTVSPTQPAHACPASPS*PAGPTA
Trigger: CGCTGTTGGTCCTGCTGGCAAAGATGGAGAAGCTGG...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCCTGTTCACCAGGCTaGCCTGCTTCACCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAPCSPG*PASPGG
Trigger: TCCTCCTGGTGAAGCAGGCAAGCCTGGTGAACAGGG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCCGAACCATCAGCACCTTaGGGACCAGCATCACCTCTG +
Preference number: 5 (lower is better)
Translates to: FPVSWGRLKFGEQWRRGPEPSAP*GPASPL
Trigger: CAGAGGTGATGCTGGTCCCAAAGGTGCTGATGGTTC...GGGGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGACCGACCACACCACGTaGTCCAGCAATACCCTGAGG +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRTDHTT*SSNTLR
Trigger: CCTCAGGGTATTGCTGGACAACGTGGTGTGGTCGGT...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGCCGTTGAGTCCGTCTTaGCCAGGAGAACCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRPLSPS*PGEPAE
Trigger: CTCTGCTGGTTCTCCTGGCAAAGACGGACTCAACGG...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS TCA 90 bp ACGAGGACCAGAAGGACCCATGGGGCCAGGCACGGAAACTCCAGCTaGTTTTTCATCATAGCCATAGGACATCTGGGAAGCAAAGTTTCC +
Preference number: 5 (lower is better)
Translates to: TRTRRTHGARHGNSS*FFIIAIGHLGSKVS
Trigger: GGAAACTTTGCTTCCCAGATGTCCTATGGCTATGATGAAAAATCAGCTGGAGTTTCCGTGCCTGGCCCCATGGGTCCTTCTGGTCCTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 90 bp GACAGTCCAGTTCTTCATTGCATTGCACGTCATCGCACACAGCCGTaGCATTGTGGCAGATACAGATCAAGCATACCTCGGGTTTCCACG +
Preference number: 5 (lower is better)
Translates to: DSPVLHCIARHRTQP*HCGRYRSSIPRVST
Trigger: CGTGGAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCACCTTTAGCGCCAGGTaGTCCATCAGCACCAGGGTT +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEATFSAR*SISTRV
Trigger: AACCCTGGTGCTGATGGACAACCTGGCGCTAAAGGT...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTGACCGCGTTCACCACTaGATCCAGAAGGACCTTGTT +
Preference number: 5 (lower is better)
Translates to: TIALRNRTVSPTQPAHACDRVHH*IQKDLV
Trigger: AACAAGGTCCTTCTGGATCAAGTGGTGAACGCGGTC...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGTATGCCTCTGTCACCTaGTTCGCCTGTCTCACCCTT +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRYASVT*FACLTL
Trigger: AAGGGTGAGACAGGCGAACAAGGTGACAGAGGCATA...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCGTCCAGGTTGCAGCCTaGGTTAGGGTCGATCCAGTA +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAVQVAA*VRVDPV
Trigger: TACTGGATCGACCCTAACCAAGGCTGCAACCTGGAC...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 90 bp AGTTCTTCATTGCATTGCACGTCATCGCACACAGCCGTGCCATTGTaGCAGATACAGATCAAGCATACCTCGGGTTTCCACGTCTCACCA +
Preference number: 5 (lower is better)
Translates to: SSSLHCTSSHTAVPL*QIQIKHTSGFHVSP
Trigger: TGGTGAGACGTGGAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCACACAGCCGTGCCATaGTGGCAGATACAGATCAAG +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAHTAVP*WQIQIK
Trigger: CTTGATCTGTATCTGCCACAATGGCACGGCTGTGTG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp AGGGAGCAGCAGCAAGAGGGGAGGGTTTCAGAAGAAAGAGAGAGATCAGATAGGATCTTGAGACTTCTCTaGAGGTGGCTGAGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: REQQQEGRVSEERERSDRILRLL*RWLRQE
Trigger: TTCCTGCCTCAGCCACCTCAAGAGAAGTCTCAAGAT...CCTATCTGATCTCTCTCTTTCTTCTGAAACCCTCCCCTCTTGCTGCTGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCAGTTCTTCATTGCATaGCACGTCATCGCACACAGC +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEAQFFIA*HVIAHS
Trigger: GCTGTGTGCGATGACGTGCAATGCAATGAAGAACTG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp ACAATTGCACTGAGGAATAGAACGGTCTCTCCCACCCAGCCTGCACATGCATGTGAGGTCTTGGTGGTTTaGTATTCGATGACTGTCTTG +
Preference number: 5 (lower is better)
Translates to: TIALRNRTVSPTQPAHACEVLVV*YSMTVL
Trigger: CAAGACAGTCATCGAATACAAAACCACCAAGACCTC...ACATGCATGTGCAGGCTGGGTGGGAGAGACCGTTCTATTCCTCAGTGCAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS-3UTR CAA 90 bp TATTTCCTGTGTCTTGGGGGAGACTTAAATTTGGGGAGCAATGGAGGAGAGGCCCTACATCTTCTGAGTTaGGTGATACGTATTCTTCCG +
Preference number: 5 (lower is better)
Translates to: YFLCLGGDLNLGSNGGEALHLLS*VIRILP
Trigger: CGGAAGAATACGTATCACCAAACTCAGAAGATGTAG...GGCCTCTCCTCCATTGCTCCCCAAATTTAAGTCTCCCCCAAGACACAGGAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp CCTCACCACGGTCTCCGGGAGCACCACGGGCTCCGGTaGGACCGGGAGGACCACTGGGACCAGCTTCACCCT +
Preference number: 6 (lower is better)
Translates to: PHHGLREHHGLR*DREDHWDQLHP
Trigger: AGGGTGAAGCTGGTCCCAGTGGTCCTCCCGGTCCCACCGGAGCCCGTGGTGCTCCCGGAGACCGTGGTGAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 72 bp GACCAGCAGGACCAGTCTCACCACGATCGCCATTCTTaGCAGCGGGACCAACAGGGCCGGGAGCACCGGGAG +
Preference number: 6 (lower is better)
Translates to: DQQDQSHHDRHS*QRDQQGREHRE
Trigger: CTCCCGGTGCTCCCGGCCCTGTTGGTCCCGCTGGCAAGAATGGCGATCGTGGTGAGACTGGTCCTGCTGGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp GGACCAGCAGGACCAGTCTCACCACGATCGCCATTCTaGCCAGCGGGACCAACAGGGCCGGGAGCACCGGGA +
Preference number: 6 (lower is better)
Translates to: GPAGPVSPRSPF*PAGPTGPGAPG
Trigger: TCCCGGTGCTCCCGGCCCTGTTGGTCCCGCTGGCAAGAATGGCGATCGTGGTGAGACTGGTCCTGCTGGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp GAGGCCTCGGTGGACATTAGGCGCAGGAAGGTCAGCTaGATAGCGACATCGGCGGGGTCGGAGCCCTCGCTT +
Preference number: 6 (lower is better)
Translates to: EASVDIRRRKVS*IATSAGSEPSL
Trigger: AAGCGAGGGCTCCGACCCCGCCGATGTCGCTATCCAGCTGACCTTCCTGCGCCTAATGTCCACCGAGGCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp ACGGGCTCCTCGTTTTCCTTCTTCTCCGGCAGGGCCTaGGGGACCTTGAACTCCAGTAGCACCGGGTTCTCC +
Preference number: 6 (lower is better)
Translates to: TGSSFSFFSGRA*GTLNSSSTGFS
Trigger: GGAGAACCCGGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCTGCCGGAGAAGAAGGAAAACGAGGAGCCCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 90 bp AGCACCAGCAATACCAGGAGCACCATTGGCACCTTTAGCGCCAGGTaGTCCATCAGCACCAGGGTTTCCAGCAGGGCCGGCAGCACCAGC +
Preference number: 6 (lower is better)
Translates to: STSNTRSTIGTFSAR*SISTRVSSRAGSTS
Trigger: GCTGGTGCTGCCGGCCCTGCTGGAAACCCTGGTGCTGATGGACAACCTGGCGCTAAAGGTGCCAATGGTGCTCCTGGTATTGCTGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS TCA 72 bp GGGCCAGGAAGACCAGGGAAGCCTCTTTCTCCTCTCTaGCCGGGAAGACCGACCACACCACGTTGTCCAGCA +
Preference number: 6 (lower is better)
Translates to: GPGRPGKPLSPL*PGRPTTPRCPA
Trigger: TGCTGGACAACGTGGTGTGGTCGGTCTTCCCGGTCAGAGAGGAGAAAGAGGCTTCCCTGGTCTTCCTGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp ACGCACACCCTGGGGACCTTCAGAGCCTCTAGCTCCTaGGGGACCAGCTTCACCCTTAGCACCAACTGCACC +
Preference number: 6 (lower is better)
Translates to: THTLGTFRASSS*GTSFTLSTNCT
Trigger: GGTGCAGTTGGTGCTAAGGGTGAAGCTGGTCCCCAAGGAGCTAGAGGCTCTGAAGGTCCCCAGGGTGTGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp AATACCAGGAGCACCATTGGCACCTTTAGCGCCAGGTaGTCCATCAGCACCAGGGTTTCCAGCAGGGCCGGC +
Preference number: 6 (lower is better)
Translates to: NTRSTIGTFSAR*SISTRVSSRAG
Trigger: GCCGGCCCTGCTGGAAACCCTGGTGCTGATGGACAACCTGGCGCTAAAGGTGCCAATGGTGCTCCTGGTATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp TCGTTTTCCTTCTTCTCCGGCAGGGCCTGGGGGACCTaGAACTCCAGTAGCACCGGGTTCTCCTTTGGCACC +
Preference number: 6 (lower is better)
Translates to: SFSFFSGRAWGT*NSSSTGFSFGT
Trigger: GGTGCCAAAGGAGAACCCGGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCTGCCGGAGAAGAAGGAAAACGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp TTCTCCTCTCTGACCGGGAAGACCGACCACACCACGTaGTCCAGCAATACCCTGAGGTCCAGGGGTACCAGG +
Preference number: 6 (lower is better)
Translates to: FSSLTGKTDHTT*SSNTLRSRGTR
Trigger: CCTGGTACCCCTGGACCTCAGGGTATTGCTGGACAACGTGGTGTGGTCGGTCTTCCCGGTCAGAGAGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp TCCGGGCAGAAAGCACAGCACTCGCCCTCCCGTCTTTaGGGGTTGGGACAGTCCAGTTCTTCATTGCATTGC +
Preference number: 6 (lower is better)
Translates to: SGQKAQHSPSRL*GLGQSSSSLHC
Trigger: GCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAGACGGGAGGGCGAGTGCTGTGCTTTCTGCCCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 90 bp GGCCAGGGTCTCCCTTGGGTCCCTCGACTCCTACATCTTCTGAGTTaGGTGATACGTATTCTTCCGGGCAGAAAGCACAGCACTCGCCCT +
Preference number: 6 (lower is better)
Translates to: GQGLPWVPRLLHLLS*VIRILPGRKHSTRP
Trigger: AGGGCGAGTGCTGTGCTTTCTGCCCGGAAGAATACGTATCACCAAACTCAGAAGATGTAGGAGTCGAGGGACCCAAGGGAGACCCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS TCA 72 bp GGTCTGGGGCACCAATGTCCAAGGGAGCCACATCGATaGTGGGCAGGCGGGAGGTCTTGGTGGTTTTGTATT +
Preference number: 6 (lower is better)
Translates to: GLGHQCPREPHR*WAGGRSWWFCI
Trigger: AATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCTCCCTTGGACATTGGTGCCCCAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 72 bp CACCGGGTTCTCCTTTGGCACCAGTGTCTCCTTTGTTaGCAGGAGCACCAGGTTCACCACTGTTACCCTTGG +
Preference number: 6 (lower is better)
Translates to: HRVLLWHQCLLC*QEHQVHHCYPW
Trigger: CCAAGGGTAACAGTGGTGAACCTGGTGCTCCTGGCAACAAAGGAGACACTGGTGCCAAAGGAGAACCCGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp CCATTGTGTATGCAGCTGACTTCAGGGATGTCTTCTTaGCCATGCGTCAGGAGGGCAGTGGCCCCTAAGAGG +
Preference number: 6 (lower is better)
Translates to: PLCMQLTSGMSS*PCVRRAVAPKR
Trigger: CCTCTTAGGGGCCACTGCCCTCCTGACGCATGGCCAAGAAGACATCCCTGAAGTCAGCTGCATACACAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 90 bp GCCCTCCCGTCTTTGGGGGTTGGGACAGTCCAGTTCTTCATTGCATaGCACGTCATCGCACACAGCCGTGCCATTGTGGCAGATACAGAT +
Preference number: 6 (lower is better)
Translates to: ALPSLGVGTVQFFIA*HVIAHSRAIVADTD
Trigger: ATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAGACGGGAGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS GCA 72 bp CTTTGGGGGTTGGGACAGTCCAGTTCTTCATTGCATTaGACGTCATCGCACACAGCCGTGCCATTGTGGCAG +
Preference number: 6 (lower is better)
Translates to: LWGLGQSSSSLH*TSSHTAVPLWQ
Trigger: CTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp CGGGCACCATCTTTACCAGGAGAACCATCAGCACCTTaGGGACCAGCATCACCTCTGTCACCCTTAGGACCT +
Preference number: 6 (lower is better)
Translates to: RAPSLPGEPSAP*GPASPLSPLGP
Trigger: AGGTCCTAAGGGTGACAGAGGTGATGCTGGTCCCAAAGGTGCTGATGGTTCTCCTGGTAAAGATGGTGCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS TCA 72 bp CAAACCAGACGTGCTTCTTTTCCTTGGGGTTCGGGCTaGTGTACCAGTTCTTCTGAGGCACAGACGGCTGAG +
Preference number: 6 (lower is better)
Translates to: QTRRASFPWGSG*CTSSSEAQTAE
Trigger: CTCAGCCGTCTGTGCCTCAGAAGAACTGGTACATCAGCCCGAACCCCAAGGAAAAGAAGCACGTCTGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp TCTTTGGGGGTTGGGACAGTCCAGTTCTTCATTGCATaGCACGTCATCGCACACAGCCGTGCCATTGTGGCA +
Preference number: 6 (lower is better)
Translates to: SLGVGTVQFFIA*HVIAHSRAIVA
Trigger: TGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGTCCCAACCCCCAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS TCA 72 bp AGAAGGACCCATGGGGCCAGGCACGGAAACTCCAGCTaGTTTTTCATCATAGCCATAGGACATCTGGGAAGC +
Preference number: 6 (lower is better)
Translates to: RRTHGARHGNSS*FFIIAIGHLGS
Trigger: GCTTCCCAGATGTCCTATGGCTATGATGAAAAATCAGCTGGAGTTTCCGTGCCTGGCCCCATGGGTCCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CCA 72 bp TTGCATTGCACGTCATCGCACACAGCCGTGCCATTGTaGCAGATACAGATCAAGCATACCTCGGGTTTCCAC +
Preference number: 6 (lower is better)
Translates to: LHCTSSHTAVPL*QIQIKHTSGFH
Trigger: GTGGAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp GGTTTCCACGTCTCACCATTGGGGACCCTTAGGCCATaGTGTATGCAGCTGACTTCAGGGATGTCTTCTTGG +
Preference number: 6 (lower is better)
Translates to: GFHVSPLGTLRP*CMQLTSGMSSW
Trigger: CCAAGAAGACATCCCTGAAGTCAGCTGCATACACAATGGCCTAAGGGTCCCCAATGGTGAGACGTGGAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp CTCCCTTGGGTCCCTCGACTCCTACATCTTCTGAGTTaGGTGATACGTATTCTTCCGGGCAGAAAGCACAGC +
Preference number: 6 (lower is better)
Translates to: LPWVPRLLHLLS*VIRILPGRKHS
Trigger: GCTGTGCTTTCTGCCCGGAAGAATACGTATCACCAAACTCAGAAGATGTAGGAGTCGAGGGACCCAAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 90 bp TCCAGTTCTTCATTGCATTGCACGTCATCGCACACAGCCGTGCCATaGTGGCAGATACAGATCAAGCATACCTCGGGTTTCCACGTCTCA +
Preference number: 6 (lower is better)
Translates to: SSSSLHCTSSHTAVP*WQIQIKHTSGFHVS
Trigger: TGAGACGTGGAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8
CDS CAA 72 bp TCATTGCATTGCACGTCATCGCACACAGCCGTGCCATaGTGGCAGATACAGATCAAGCATACCTCGGGTTTC +
Preference number: 6 (lower is better)
Translates to: SLHCTSSHTAVP*WQIQIKHTSGF
Trigger: GAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001547.8