RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL11A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027966

Ensembl transcript IDs: ENSMUST00000092155.12, ENSMUST00000123619.8, ENSMUST00000184978.2, ENSMUST00000211802.2

Found 299 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTTGTATCACAAATATTTATTGCCGTCACAGTCCACAATTGTCATaGAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGG +
Preference number: 1 (lower is better)
Translates to: FCITNIYCRHSPQLS*NLSWVGLRVTCKFW
Trigger: CCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAATTGTGGACTGTGACGGCAATAAATATTTGTGATACAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR CCA 90 bp CGTTCACCTATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTTCCAGGGAATCCAACTaGACCTTGAGGTCCTTGAGG +
Preference number: 2 (lower is better)
Translates to: RSPIGPVSPVGPCGPTTPSRESN*TLRSLR
Trigger: CCTCAAGGACCTCAAGGTCCAGTTGGATTCCCTGGA...AGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTATAGGTGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
3UTR-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGGTCATACCAGGCAGCTaGCTGATGGCAATTGTAGGT +
Preference number: 2 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMVIPGS*LMAIVG
Trigger: ACCTACAATTGCCATCAGTCAGCTGCCTGGTATGAC...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
3UTR-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATAGGAGAGATGAGGGTTaGGAATCAAGAATTAGCCCC +
Preference number: 2 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYRRDEG*ESRISP
Trigger: GGGGCTAATTCTTGATTCTCAACCCTCATCTCTCCT...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAGGAGAGATGAGGGTTaGGAATCAAGAATTAGCCCC +
Preference number: 2 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLRRDEG*ESRISP
Trigger: GGGGCTAATTCTTGATTCTCAACCCTCATCTCTCCT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR TCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAAGTCCACAATTGTCATaGAATCTGAGCTGGGTGGGA +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLESPQLS*NLSWVG
Trigger: TCCCACCCAGCTCAGATTTCATGACAATTGTGGACT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGCATGTGGCGTAAAATaGTTGGTGGCACCAAGGTAT +
Preference number: 2 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLACGVK*LVAPRY
Trigger: ATACCTTGGTGCCACCAACCATTTTACGCCACATGC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGCATGTGGCGTAAAATaGTTGGTGGCACCAAGGTAT +
Preference number: 2 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYACGVK*LVAPRY
Trigger: ATACCTTGGTGCCACCAACCATTTTACGCCACATGC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATACTGTACCAACTTCCTaGTTTCTCCTTTGGCCACGA +
Preference number: 2 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDTVPTS*FLLWPR
Trigger: TCGTGGCCAAAGGAGAAACCAGGAAGTTGGTACAGT...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
3UTR-3UTR GCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGGATTGAGAGTCACGTaGAAGTTTTGGAAATGGACA +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLEGLRVT*KFWKWT
Trigger: TGTCCATTTCCAAAACTTGCACGTGACTCTCAATCC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAATTCAAAACTTGCATGTaGCGTAAAATGGTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLEFKTCM*RKMVGG
Trigger: GCCACCAACCATTTTACGCCACATGCAAGTTTTGAA...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTTCAAAACTTGCATGTaGCGTAAAATGGTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLFKTCM*RKMVGG
Trigger: GCCACCAACCATTTTACGCCACATGCAAGTTTTGAA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR TCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACGTGAAATTTGTCAGTaGCATCAAATAACTGAAGTC +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLEREICQ*HQITEV
Trigger: GACTTCAGTTATTTGATGTCACTGACAAATTTCACG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCTTATTCAAAACTTaGATGTGGCGTAAAATGGTT +
Preference number: 2 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSLFKT*MWRKMV
Trigger: AACCATTTTACGCCACATGCAAGTTTTGAATAAGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR GCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATCACAAATATTTATTaGCGTCACAGTCCACAATTG +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLEITNIY*RHSPQL
Trigger: CAATTGTGGACTGTGACGGCAATAAATATTTGTGAT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAAAGTTATTTTCTGGGTaGATGTTAAAGCAGTTTCTC +
Preference number: 2 (lower is better)
Translates to: IVMKSELGGIESHVQVLEKLFSG*MLKQFL
Trigger: GAGAAACTGCTTTAACATCCACCCAGAAAATAACTT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR TCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTCATCATACAAAGCTTTaGTGTGTGGGTTGTTCTCAT +
Preference number: 2 (lower is better)
Translates to: YINDGYLINFRSIDLNHCHHTKL*CVGCSH
Trigger: ATGAGAACAACCCACACATCAAAGCTTTGTATGATG...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
3UTR-3UTR GCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGGGATTGAGAGTCACGTaGAAGTTTTGGAAATGGACA +
Preference number: 2 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELGLRVT*KFWKWT
Trigger: TGTCCATTTCCAAAACTTGCACGTGACTCTCAATCC...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR TCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGTGAAATCTGGATTCTaGGAAGAAAATATTCGAGGT +
Preference number: 2 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIVKSGF*EENIRG
Trigger: ACCTCGAATATTTTCTTCTCAGAATCCAGATTTCAC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR TCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTAGCAAATATGACTTTTaGAACAGCTCACCCTATGTA +
Preference number: 2 (lower is better)
Translates to: IATCLRKKMTNPGRQDLISKYDF*NSSPYV
Trigger: TACATAGGGTGAGCTGTTTCAAAAGTCATATTTGCT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR CAA 90 bp ATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGAATCCAACTGGACCTaGAGGTCCTTGAGGGCCCCT +
Preference number: 3 (lower is better)
Translates to: IGPVSPVGPCGPTTPPGPESNWT*RSLRAP
Trigger: AGGGGCCCTCAAGGACCTCAAGGTCCAGTTGGATTC...TGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
3UTR-3UTR CAA 90 bp CCACGTTCACCTATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACAGGGACCTGTCTTGCCTaGAAATCCAGTCTCACCACG +
Preference number: 3 (lower is better)
Translates to: PRSPIGPVSPVGPCGPTTGTCLA*KSSLTT
Trigger: CGTGGTGAGACTGGATTTCAAGGCAAGACAGGTCCC...TGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTATAGGTGAACGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
3UTR TCA 72 bp ACAAATATTTATTGCCGTCACAGTCCACAATTGTCATaGAATCTGAGCTGGGTGGGATTGAGAGTCACGTGC +
Preference number: 3 (lower is better)
Translates to: TNIYCRHSPQLS*NLSWVGLRVTC
Trigger: GCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAATTGTGGACTGTGACGGCAATAAATATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR TCA 72 bp AGCCTTTTCGAGACGCACAGCCATCATACAAAGCTTTaGTGTGTGGGTTGTTCTCATAGGACATTTCCTCAT +
Preference number: 3 (lower is better)
Translates to: SLFETHSHHTKL*CVGCSHRTFPH
Trigger: ATGAGGAAATGTCCTATGAGAACAACCCACACATCAAAGCTTTGTATGATGGCTGTGCGTCTCGAAAAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
3UTR-3UTR CAA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCACATTTCCTCATCATTaGATCCCAGAAATCGAAGTG +
Preference number: 3 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTATFPHH*IPEIEV
Trigger: CACTTCGATTTCTGGGATCAAATGATGAGGAAATGT...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
3UTR-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGAGTCACGTGCAAGTTTaGGAAATGGACACAGGGATG +
Preference number: 3 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSHVQV*EMDTGM
Trigger: CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCTGAAAGTCTAGATTaGACCACCGTGAAATTTGTC +
Preference number: 3 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPESLD*TTVKFV
Trigger: GACAAATTTCACGGTGGTCAAATCTAGACTTTCAGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR TCA 72 bp AGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATaGCAGTGTAGAACTGTACATAAAATAATTACACTT +
Preference number: 3 (lower is better)
Translates to: RVTCKFWKWTQG*QCRTVHKIITL
Trigger: AAGTGTAATTATTTTATGTACAGTTCTACACTGTCATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
3UTR TCA 72 bp CAAGGGTTACAGAATTCTTCTCTGGATGGTCAAGTATaGCAATCAAAAGTACTTTTGAACACAAGAGTGAAT +
Preference number: 3 (lower is better)
Translates to: QGLQNSSLDGQV*QSKVLLNTRVN
Trigger: ATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGAGAAGAATTCTGTAACCCTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
3UTR TCA 72 bp CCAAAATCATTGATCATTACATCAATGATGGGTACCTaGTCAATTTTCGGAGTATTGATCTCAATCACTGTC +
Preference number: 3 (lower is better)
Translates to: PKSLIITSMMGT*SIFGVLISITV
Trigger: GACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTAATGATCAATGATTTTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp AGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGACCTCGAGGACCCGTTaGACCACGCTGTCCCCGGGG +
Preference number: 4 (lower is better)
Translates to: RTSLTSWSLWSYHTSWSRTSRTR*TTLSPG
Trigger: CCCCGGGGACAGCGTGGTCCAACGGGTCCTCGAGGT...CCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp CACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGGGACCTGTCTTTGGCCAGAGGGACCTaGGTCTCCAGTTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: HQLVPVVLPHLLVQGDLSLARGT*VSSWAC
Trigger: GCAGGCCCAACTGGAGACCCAGGTCCCTCTGGCCAA...AGACAGGTCCCCCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp AGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGACCTCTGGCGCCTCTaGAACCTCGAGGACCCGTTG +
Preference number: 4 (lower is better)
Translates to: RTSLTSWSLWSYHTSWSRDLWRL*NLEDPL
Trigger: CAACGGGTCCTCGAGGTTCCAGAGGCGCCAGAGGTC...CCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR GCA 90 bp ACCTCCTGGTCCAGGGGGACCTGTCTTGCCTTGAAATCCAGTCTCACCACGCTGGTCTCCAGTTGGGCCTaGACGGCCTTTGGGGCCTTC +
Preference number: 4 (lower is better)
Translates to: TSWSRGTCLALKSSLTTLVSSWA*TAFGAF
Trigger: GAAGGCCCCAAAGGCCGTGCAGGCCCAACTGGAGAC...CAGCGTGGTGAGACTGGATTTCAAGGCAAGACAGGTCCCCCTGGACCAGGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp ACCTCCTGGTCCAGGGGGACCTGTCTTGCCTTGAAATCCAGTCTCACCACGCTGTTCCCGTGGGACCTCTaGCGCCTCTGGAACCTCGAG +
Preference number: 4 (lower is better)
Translates to: TSWSRGTCLALKSSLTTLFPWDL*RLWNLE
Trigger: CTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAA...CAGCGTGGTGAGACTGGATTTCAAGGCAAGACAGGTCCCCCTGGACCAGGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
3UTR CAA 72 bp TACCACACCTCCTGGTCCAGGGGGACCTGTCTTGCCTaGAAATCCAGTCTCACCACGCTGCCCAGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: YHTSWSRGTCLA*KSSLTTLPRVS
Trigger: GGACACCCTGGGCAGCGTGGTGAGACTGGATTTCAAGGCAAGACAGGTCCCCCTGGACCAGGAGGTGTGGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR GCA 90 bp CACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGGGACCTGTCTTTTTCCCTTCTCTCCTaGTTGGCCAGAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: HQLVPVVLPHLLVQGDLSFSLLS*LARGTW
Trigger: CCAGGTCCCTCTGGCCAAGCAGGAGAGAAGGGAAAA...AGACAGGTCCCCCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGGGACCAGGAGGACCCTaGGGGCCTGGACGTCCTGGC +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMGPGGP*GPGRPG
Trigger: GCCAGGACGTCCAGGCCCCCAGGGTCCTCCTGGTCC...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp TTCACCTATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCACCTGGGTCTCCAGTTaGGCCTGCACGGCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: FTYRTSLTSWSLWSYHTSTWVSS*ACTAFG
Trigger: CCCAAAGGCCGTGCAGGCCCAACTGGAGACCCAGGT...GGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTATAGGTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGGCCTGCTGTGCCTGCTaGGCCTCGCTCTCCAGGAGA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMACCAC*ASLSRR
Trigger: TCTCCTGGAGAGCGAGGCTCAGCAGGCACAGCAGGC...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCTGCCCAGGGGGTCCTaGAGTTCCCCTTGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMLPRGS*SSPWSQ
Trigger: CTGGGACCAAGGGGAACTCCAGGACCCCCTGGGCAG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp AGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGCTCCCCGTTGGCACCTaGAAATCCAGGAAATCCAGT +
Preference number: 4 (lower is better)
Translates to: RTSLTSWSLWSYHTSWSRLPVGT*KSRKSS
Trigger: ACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAG...CCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp CCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGGGAATATCCCGGCAATCCTaGAACCCCAAGTTTTCCCTT +
Preference number: 4 (lower is better)
Translates to: PVSPVGPCGPTTPPGPGGISRQS*NPKFSL
Trigger: AAGGGAAAACTTGGGGTTCCAGGATTGCCGGGATAT...TCCCCCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCTCGAGGACCCGTTaGACCACGCTGTCCCCGGGG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTSRTR*TTLSPG
Trigger: CCCCGGGGACAGCGTGGTCCAACGGGTCCTCGAGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGGACCTCTGGCGCCTCTaGAACCTCGAGGACCCGTTG +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMDLWRL*NLEDPL
Trigger: CAACGGGTCCTCGAGGTTCCAGAGGCGCCAGAGGTC...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTTCGCCCTTTTCACCTaGTGGGCCTGGCAACCCCTG +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMFALFT*WAWQPL
Trigger: CAGGGGTTGCCAGGCCCACCAGGTGAAAAGGGCGAA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCGCTCCATTGGGACCTTaGGGGCCTCGTGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTAAPLGP*GPRGPG
Trigger: TCCTGGCCCACGAGGCCCTCAAGGTCCCAATGGAGC...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGTCTCCAGTTGGGCCTaGACGGCCTTTGGGGCCTTC +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSVSSWA*TAFGAF
Trigger: GAAGGCCCCAAAGGCCGTGCAGGCCCAACTGGAGAC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCCACAGGACCAGGGATaGCTCGAAGACCTTCTGGAC +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMPQDQG*LEDLLD
Trigger: GTCCAGAAGGTCTTCGAGGCATCCCTGGTCCTGTGG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTTGGCCAGCAGCACCTaGGAGACCTTGTTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMLASST*ETLFSH
Trigger: GTGGGAGAACAAGGTCTCCCAGGTGCTGCTGGCCAA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCCTCTTTCTCCCCTGTaGCCTTTGTCACCAGGCAGA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMPLSPL*PLSPGR
Trigger: TCTGCCTGGTGACAAAGGTCACAGGGGAGAAAGAGG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCCTTCTTTCCCAGGATaGCCAGGAGGTCCATCAGCA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMPSFPG*PGGPSA
Trigger: TGCTGATGGACCTCCTGGTCATCCTGGGAAAGAAGG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCTCCTCTCTCTCCTTTaGGACCACCAGAGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMLLSLL*DHQSQL
Trigger: AAGCTGGCTCTGGTGGTCTCAAAGGAGAGAGAGGAG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCACAATTGGGCCTGCTGTaGCTGCTGAGCCTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSQLGLL*LLSLAL
Trigger: GAGAGCGAGGCTCAGCAGGCACAGCAGGCCCAATTG...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATAGGGCCCCTTTCGCCTaGAGGACCAGGAGGGCCATC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYRAPFA*RTRRAI
Trigger: GATGGCCCTCCTGGTCCTCCAGGCGAAAGGGGCCCT...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCAGGAGAGCCAACTaGACCCTGTGGGCCCTGGGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSRRAN*TLWALG
Trigger: CCCCAGGGCCCACAGGGTCCAGTTGGCTCTCCTGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTTCACCTGGTGGGCCTaGCAACCCCTGAAGACCTAT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMFTWWA*QPLKTY
Trigger: ATAGGTCTTCAGGGGTTGCCAGGCCCACCAGGTGAA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCACTTCCCAGGAGGACCTaGAGGGCCAGCTTCACCAGA +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSLPRRT*RASFTR
Trigger: TCTGGTGAAGCTGGCCCTCCAGGTCCTCCTGGGAAG...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGTTCACCTATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTATCCAGTGGATCCAGTaGCATCTGAAAGCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: RSPIGPVSPVGPCGPTTPIQWIQ*HLKAFG
Trigger: TCCAAAGGCTTTCAGATGTCACTGGATCCACTGGAT...AGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTATAGGTGAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATAAGACCCGCTGGTCCTaGTGGCCCAGGTGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYKTRWS*WPRWSF
Trigger: GAAGGACCACCTGGGCCAGCAGGACCAGCGGGTCTT...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCCTCCGATACCAGGCTaGCCAGGGGGTCCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYPPIPG*PGGPGV
Trigger: AACTCCAGGACCCCCTGGGCAGCCTGGTATCGGAGG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTCCTGGGAAACCTCGTaGGCCCTCATCACCTTTTTG +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMSWETS*ALITFL
Trigger: CAAAAAGGTGATGAGGGCGCACGAGGTTTCCCAGGA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCCAGCAGGACCTGGGATaGCCCCATCGCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLQQDLG*PHRLWL
Trigger: GAGCCAAAGGCGATGGGGGCATCCCAGGTCCTGCTG...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCACCCGCTGGTCCTGCTaGCCCAGGTGGTCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLTRWSC*PRWSFN
Trigger: GTTGAAGGACCACCTGGGCCAGCAGGACCAGCGGGT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATCCTGGAGGGCCAATTaGGCCTTGTGGACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSSWRAN*ALWTRK
Trigger: CTTCCTGGTCCACAAGGCCCAATTGGCCCTCCAGGA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCACCTGGGTCTCCAGTTaGGCCTGCACGGCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLTWVSS*ACTAFG
Trigger: CCCAAAGGCCGTGCAGGCCCAACTGGAGACCCAGGT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTTCCCGTGGGACCTCTaGCGCCTCTGGAACCTCGAG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYFPWDL*RLWNLE
Trigger: CTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCCCTGAAGACCTATaGGGCCAGGAAGTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTPEDL*GQEVLG
Trigger: TCCCAGGACTTCCTGGCCCCATAGGTCTTCAGGGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCCTTCCCAGGAGGACCTaGAGGGCCAGCTTCACCAGA +
Preference number: 4 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTALPRRT*RASFTR
Trigger: TCTGGTGAAGCTGGCCCTCCAGGTCCTCCTGGGAAG...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAGGCCCGGGAGGCCCTaGCATACCACTGTCACCCTT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLRPGRP*HTTVTL
Trigger: AAGGGTGACAGTGGTATGCCAGGGCCTCCCGGGCCT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATGTTCGTGCTGGGTTaGTCTGTGTGCCCATGGGAA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMMFVLG*SVCPWE
Trigger: TTCCCATGGGCACACAGACCAACCCAGCACGAACAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGGGCCCTGGGTTCCCTaGTTCTCCAGGTTCACCCTT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYGPWVP*FSRFTL
Trigger: AAGGGTGAACCTGGAGAAGCAGGGAACCCAGGGCCC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTCGGGATGGCTGAGTTaGAGGTCTTTGCATGTTCGT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMSGWLS*RSLHVR
Trigger: ACGAACATGCAAAGACCTGCAACTCAGCCATCCCGA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCTCCATCAGCACCTaGACGGCCCCTCTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSSIST*TAPLSR
Trigger: CCTGGAAAGAGGGGCCGTCCAGGTGCTGATGGAGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGCCAGGGAGGCCAGGTaGACCTTGTGGACCTCTTTC +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEAREAR*TLWTSF
Trigger: GAAAGAGGTCCACAAGGTCCACCTGGCCTCCCTGGC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACACCTGGAAGACCCCTaGGCCCGATCTCCCCATCTT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEHLEDP*ARSPHL
Trigger: AAGATGGGGAGATCGGGCCCAGGGGTCTTCCAGGTG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGAAGTCCTTGAGGTCCTaGATTTCCTTGCTGACCTGG +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMKSLRS*ISLLTW
Trigger: CCAGGTCAGCAAGGAAATCCAGGACCTCAAGGACTT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCAGTCTCACCAGTTaGTCCCTGTGGTCCTACCAC +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTSLTS*SLWSYH
Trigger: GTGGTAGGACCACAGGGACCAACTGGTGAGACTGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATAGGACCCTGGGGGCCTaGACGTCCTGGCAAACCAAT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYRTLGA*TSWQTN
Trigger: ATTGGTTTGCCAGGACGTCCAGGCCCCCAGGGTCCT...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTTCGCCCTTTTCACCTaGTGGGCCTGGCAACCCCTG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYFALFT*WAWQPL
Trigger: CAGGGGTTGCCAGGCCCACCAGGTGAAAAGGGCGAA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATGTCCCGGGTTCCCCTTaGGCCCATCATCACCTGGTG +
Preference number: 4 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDVPGSP*AHHHLV
Trigger: CACCAGGTGATGATGGGCCCAAGGGGAACCCGGGAC...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCTGGACCAGGGGGACCTaGTTGTCCTGGATCTCCATC +
Preference number: 4 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTAWTRGT*LSWISI
Trigger: GATGGAGATCCAGGACAACCAGGTCCCCCTGGTCCA...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGCCTCGAAGACCTTCTaGACCAGGCTTTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSASKTF*TRLSRR
Trigger: CCTTCTGGAAAGCCTGGTCCAGAAGGTCTTCGAGGC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CAGTTTTCCTCTCTTAAATTCACTGTACCAACTTCCTGGTTTCTCCTTTGGCCAAGGCCCGGGAGGCCCTaGCATACCACTGTCACCCTT +
Preference number: 4 (lower is better)
Translates to: QFSSLKFTVPTSWFLLWPRPGRP*HTTVTL
Trigger: AAGGGTGACAGTGGTATGCCAGGGCCTCCCGGGCCT...TGGCCAAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTTTCCAGAAGGTCCCTaGGGTCCGACAGGGCCAGTT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLFPEGP*GPTGPV
Trigger: AACTGGCCCTGTCGGACCTCAGGGACCTTCTGGAAA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGAGCTTGGGCTTCCTGTaGAGAGATTGTTGGTCCTTT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMSLGFL*RDCWSF
Trigger: AAAGGACCAACAATCTCTGCACAGGAAGCCCAAGCT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATGGTAACATCAGCATaGTTCCAGGAGGTCCAGGTA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMMVTSA*FQEVQV
Trigger: TACCTGGACCTCCTGGAACCATGCTGATGTTACCAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCAGTAAGACCCATTaGGCCAGGAGGGCCTCTCAG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSSKTH*ARRASQ
Trigger: CTGAGAGGCCCTCCTGGCCCAATGGGTCTTACTGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCACCCTGGTTTTCCTTGTaGCCCTTTTTCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSPWFSL*PFFSWR
Trigger: CCTCCAGGAGAAAAAGGGCCACAAGGAAAACCAGGG...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATATCCCGGCAATCCTaGAACCCCAAGTTTTCCCTT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMISRQS*NPKFSL
Trigger: AAGGGAAAACTTGGGGTTCCAGGATTGCCGGGATAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATCCAGGAAATCCAGTaGATCCCTTTGGACCTTGTC +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMIQEIQ*IPLDLV
Trigger: GACAAGGTCCAAAGGGATCCACTGGATTTCCTGGAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCTACCTGCAGGACCCTaGGGACCCTTTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYLPAGP*GPFSPG
Trigger: TCCTGGAGAAAAGGGTCCCCAGGGTCCTGCAGGTAG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGTCCATCAGCTCCATTaGGACCTTGAGGGCCTCGTG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYVHQLH*DLEGLV
Trigger: CACGAGGCCCTCAAGGTCCCAATGGAGCTGATGGAC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGTCCATCAGCTCCATTaGGACCTTGAGGGCCTCGTG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLVHQLH*DLEGLV
Trigger: CACGAGGCCCTCAAGGTCCCAATGGAGCTGATGGAC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCCCCATCATCACCTGGTaGCCCCTTAATACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTAPIITW*PLNTSR
Trigger: CCTGCTGGTATTAAGGGGCCACCAGGTGATGATGGG...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGGGCCCATCATCACCTaGTGGCCCCTTAATACCAGC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYGPIIT*WPLNTS
Trigger: GCTGGTATTAAGGGGCCACCAGGTGATGATGGGCCC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTGGACCAGGGGGACCTaGTTGTCCTGGATCTCCATC +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLWTRGT*LSWISI
Trigger: GATGGAGATCCAGGACAACCAGGTCCCCCTGGTCCA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTTGGCCAGCAGCACCTaGGAGACCTTGTTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYLASST*ETLFSH
Trigger: GTGGGAGAACAAGGTCTCCCAGGTGCTGCTGGCCAA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTGGTCCATCTTTTCCTaGGATACCTTGAGGCCCGGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLWSIFS*DTLRPG
Trigger: CCCGGGCCTCAAGGTATCTCAGGAAAAGATGGACCA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACTCCTCTCTCTCCTTTaGGACCACCAGAGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLELLSLL*DHQSQL
Trigger: AAGCTGGCTCTGGTGGTCTCAAAGGAGAGAGAGGAG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CAGTTTTCCTCTCTTAAATTCACTGTACCAACTTCCTGGTTTCTCCTTTGGCCAGCTCCTGGAGAACCTTaGGTCCCAGGAAGTCCTCTG +
Preference number: 4 (lower is better)
Translates to: QFSSLKFTVPTSWFLLWPAPGEP*VPGSPL
Trigger: CAGAGGACTTCCTGGGACTCAAGGTTCTCCAGGAGC...TGGCCAAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGGAAGTCGGGATGGCTaGGTTGCAGGTCTTTGCATG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYGSRDG*VAGLCM
Trigger: CATGCAAAGACCTGCAACTCAGCCATCCCGACTTCC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAATTTTCCCTTCTCTCCTaGTTGGCCAGAGGGACCTGG +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEFSLLS*LARGTW
Trigger: CCAGGTCCCTCTGGCCAAGCAGGAGAGAAGGGAAAA...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTGCACCTTCTTTCCCTaGAGCACCGGGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYCTFFP*STGKSL
Trigger: CAAGGACTTCCCGGTGCTGCAGGGAAAGAAGGTGCA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAAACACCATCTTGCCCTaGAGGACCAGGTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLENTILP*RTRFSR
Trigger: CCTGGAGAACCTGGTCCTGCAGGGCAAGATGGTGTT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAACACCATCTTGCCCTaGAGGACCAGGTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLNTILP*RTRFSR
Trigger: CCTGGAGAACCTGGTCCTGCAGGGCAAGATGGTGTT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCCAGCAAGCCTCTTaGACCAGCTTCACCTGGAAG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSQQAS*TSFTWK
Trigger: CTTCCAGGTGAAGCTGGTCCAAGAGGCTTGCTGGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATTTCCTTTTGGTCCTTaGGGGCCATCTATACCTCCG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSFPFGP*GPSIPP
Trigger: CGGAGGTATAGATGGCCCCCAAGGACCAAAAGGAAA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGGTCCAGGCTCCCCTTaGGGACCCATGTTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEGPGSP*GPMFPF
Trigger: AAAAGGAAACATGGGTCCCCAAGGGGAGCCTGGACC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGCCAATTGGGCCTTGTaGACCAGGAAGTCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYANWAL*TRKSLR
Trigger: CCTCAAGGACTTCCTGGTCCACAAGGCCCAATTGGC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAGACCCACAGGGCCTTaGACACCATCTCTACCTGCA +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLRPTGP*TPSLPA
Trigger: TGCAGGTAGAGATGGTGTCCAAGGCCCTGTGGGTCT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCCACCAACTGAACCAATaGAGCCTGGGGGTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLHQLNQ*SLGVLV
Trigger: CACAAGGACCCCCAGGCTCCATTGGTTCAGTTGGTG...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGCCTCGAAGACCTTCTaGACCAGGCTTTCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLASKTF*TRLSRR
Trigger: CCTTCTGGAAAGCCTGGTCCAGAAGGTCTTCGAGGC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCATCGCCTTTGGCTCCTaGAGAACCTTGAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLIAFGS*RTLSPR
Trigger: CCTGGGACTCAAGGTTCTCCAGGAGCCAAAGGCGAT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTTTTCTTCTCCACACTaGTTGCGACCCGGTGCCACT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLFSSPH*LRPGAT
Trigger: AGTGGCACCGGGTCGCAATCAGTGTGGAGAAGAAAA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTTTCCTGAGATACCTTaGGGCCCGGGATCACCCTTT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLFPEIP*GPGSPF
Trigger: AAAGGGTGATCCCGGGCCTCAAGGTATCTCAGGAAA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGCTCCATTGGGACCTTaGGGGCCTCGTGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIAPLGP*GPRGPG
Trigger: TCCTGGCCCACGAGGCCCTCAAGGTCCCAATGGAGC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATCCAGGGTCACCTTTaGGACCAGGTAAACCAGGAG +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEIQGHL*DQVNQE
Trigger: CTCCTGGTTTACCTGGTCTCAAAGGTGACCCTGGAT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTCCTGGGAAACCTCGTaGGCCCTCATCACCTTTTTG +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYSWETS*ALITFL
Trigger: CAAAAAGGTGATGAGGGCGCACGAGGTTTCCCAGGA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATTCTGCTGGGACACCTaGGCCAAATTCTTCATTAGG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSFCWDT*AKFFIR
Trigger: CCTAATGAAGAATTTGGCCCAGGTGTCCCAGCAGAA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATAGATTGTTGGTCCTTTaGAGCCGTCACCCCCATAGC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYRLLVL*SRHPHS
Trigger: GCTATGGGGGTGACGGCTCCAAAGGACCAACAATCT...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCCATGTTTCCTTTTaGTCCTTGGGGGCCATCTAT +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTHVSF*SLGAIY
Trigger: ATAGATGGCCCCCAAGGACCAAAAGGAAACATGGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACTCCCCGTTGGCACCTaGAAATCCAGGAAATCCAGT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLELPVGT*KSRKSS
Trigger: ACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTCCAGGGAATCCAACTaGACCTTGAGGTCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLSRESN*TLRSLR
Trigger: CCTCAAGGACCTCAAGGTCCAGTTGGATTCCCTGGA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATTTCACCTGGTGGGCCTaGCAACCCCTGAAGACCTAT +
Preference number: 4 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDFTWWA*QPLKTY
Trigger: ATAGGTCTTCAGGGGTTGCCAGGCCCACCAGGTGAA...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATCACCAACTGAACCAATaGAGCCTGGGGGTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDHQLNQ*SLGVLV
Trigger: CACAAGGACCCCCAGGCTCCATTGGTTCAGTTGGTG...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCCTTGGGGTCTCCTGTaGTCAGGAACTGCTGAATAT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYPWGLL*SGTAEY
Trigger: ATATTCAGCAGTTCCTGATCACAGGAGACCCCAAGG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTTATGCTTGTTTCTGTaGAATCAGTTTCTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMLCLFL*NQFLLG
Trigger: TCCCAGCAGAAACTGATTTCACAGAAACAAGCATAA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCCAAACTTCTGGTTCTaGTCACCAAAATCATTGATC +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMPNFWF*SPKSLI
Trigger: GATCAATGATTTTGGTGATCAGAACCAGAAGTTTGG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCTTTGTCACCTTTGCTaGCCTTTTGGCCTGGTTCAC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYLCHLC*PFGLVH
Trigger: GTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTGGGCCCTGGGTTCCCTaGTTCTCCAGGTTCACCCTT +
Preference number: 4 (lower is better)
Translates to: YINDGYLINFRSIDLNHCGPWVP*FSRFTL
Trigger: AAGGGTGAACCTGGAGAAGCAGGGAACCCAGGGCCC...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGCACCTTTTTCTCCTTaGCTTCCTTCTGAACCTGAA +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSAPFSP*LPSEPE
Trigger: TTCAGGTTCAGAAGGAAGGCAAGGAGAAAAAGGTGC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGCAGCAGGACCTGGGATaGCCCCATCGCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELQQDLG*PHRLWL
Trigger: GAGCCAAAGGCGATGGGGGCATCCCAGGTCCTGCTG...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGATAGTTTTCCGGTGTaGGTTTTCCAGTGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSDSFPV*VFQCGL
Trigger: AAGACCACACTGGAAAACCCACACCGGAAAACTATC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTTTGGCCAGAGGGACCTaGGTCTCCAGTTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLILARGT*VSSWAC
Trigger: GCAGGCCCAACTGGAGACCCAGGTCCCTCTGGCCAA...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGAGCCCAGGTGCACCCTaGGCTCCAGGAAGGCCTCTT +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSPGAP*APGRPL
Trigger: AAGAGGCCTTCCTGGAGCCCAGGGTGCACCTGGGCT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGGGACCCTGTGGGCCCTaGGGACCTTCTCCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELGPCGP*GPSPPF
Trigger: GAAAGGAGGAGAAGGTCCCCAGGGCCCACAGGGTCC...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGCTGCCCTTTTGGCCTaGTTCACCAATTTCACCCTT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLEAALLA*FTNFTL
Trigger: AAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGTCCCGGGTTCCCCTTaGGCCCATCATCACCTGGTG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIVPGSP*AHHHLV
Trigger: CACCAGGTGATGATGGGCCCAAGGGGAACCCGGGAC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATTGAGAGCAAGCAGGTaGCTAAAGAATACATTCCCT +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSLRASR*LKNTFP
Trigger: AGGGAATGTATTCTTTAGGCACCTGCTTGCTCTCAA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACTGACCTCTCTAGCTTaGAAGAGAAAAGTCAAGGCG +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLELTSLA*KRKVKA
Trigger: CGCCTTGACTTTTCTCTTCCAAGCTAGAGAGGTCAG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTCACCTGAACAACCTTaGTTAGGATCAATCCAATAT +
Preference number: 4 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMSPEQP*LGSIQY
Trigger: ATATTGGATTGATCCTAACCAAGGTTGTTCAGGTGA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGCTCCTGGAGAACCTTaGGTCCCAGGAAGTCCTCTG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIAPGEP*VPGSPL
Trigger: CAGAGGACTTCCTGGGACTCAAGGTTCTCCAGGAGC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATCAATGATGGGTACCTaGTCAATTTTCGGAGTATTG +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSSMMGT*SIFGVL
Trigger: CAATACTCCGAAAATTGATCAGGTACCCATCATTGA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCACAGGACCAGGGATaGCTCGAAGACCTTCTGGAC +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPQDQG*LEDLLD
Trigger: GTCCAGAAGGTCTTCGAGGCATCCCTGGTCCTGTGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAAAGAATATTATCTCCTaGATCACCCTGGATGCTTTC +
Preference number: 4 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSKNIIS*ITLDAF
Trigger: GAAAGCATCCAGGGTGATGCAGGAGATAATATTCTT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCTTTTATCCGGATAGATaGATGTCTCACCACCAGCTG +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLFYPDR*MSHHQL
Trigger: CAGCTGGTGGTGAGACATGCATCTATCCGGATAAAA...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGTCCAGGCTTTCCCGTTaGACCAGGAGGACCTTGGAC +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSRLSR*TRRTLD
Trigger: GTCCAAGGTCCTCCTGGTCCAACGGGAAAGCCTGGA...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTTCCTGGAGTTCCCCTTaGTCCCAGCAAGCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLISWSSP*SQQASW
Trigger: CCAAGAGGCTTGCTGGGACCAAGGGGAACTCCAGGA...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTACCCCTGAAGACCTATaGGGCCAGGAAGTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLITPEDL*GQEVLG
Trigger: TCCCAGGACTTCCTGGCCCCATAGGTCTTCAGGGGT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTTCCCCTTGTTCTCCTaGAGGACCAATCAATCCAAT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYFPLFS*RTNQSN
Trigger: ATTGGATTGATTGGTCCTCCAGGAGAACAAGGGGAA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTATCCAGGGTCACCTTTaGGACCAGGTAAACCAGGAG +
Preference number: 4 (lower is better)
Translates to: YINDGYLINFRSIDLNHCIQGHL*DQVNQE
Trigger: CTCCTGGTTTACCTGGTCTCAAAGGTGACCCTGGAT...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCTCCTCCATGCCATCTaGGTAGTCAAGAATATTATC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYLLHAI*VVKNII
Trigger: GATAATATTCTTGACTACTCAGATGGCATGGAGGAG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGGAAGTCGGGATGGCTaGGTTGCAGGTCTTTGCATG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIGSRDG*VAGLCM
Trigger: CATGCAAAGACCTGCAACTCAGCCATCCCGACTTCC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCATTTCCTCATCATTTaGTCCCAGAAATCGAAGTGC +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYHFLII*SQKSKC
Trigger: GCACTTCGATTTCTGGGATCAAATGATGAGGAAATG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCCCCTTTCTCTCCATATaGACCATGTCCATTTATGCT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLPFLSI*TMSIYA
Trigger: AGCATAAATGGACATGGTGCATATGGAGAGAAAGGG...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCCATCATCACCTGGTaGCCCCTTAATACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPIITW*PLNTSR
Trigger: CCTGCTGGTATTAAGGGGCCACCAGGTGATGATGGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATTTCCCCTTGTTCTCCTaGAGGACCAATCAATCCAAT +
Preference number: 4 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDFPLFS*RTNQSN
Trigger: ATTGGATTGATTGGTCCTCCAGGAGAACAAGGGGAA...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTATCGCCTTTGGCTCCTaGAGAACCTTGAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIIAFGS*RTLSPR
Trigger: CCTGGGACTCAAGGTTCTCCAGGAGCCAAAGGCGAT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATCTCCTCCATGCCATCTaGGTAGTCAAGAATATTATC +
Preference number: 4 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDLLHAI*VVKNII
Trigger: GATAATATTCTTGACTACTCAGATGGCATGGAGGAG...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATCTTGTTTCAGAGAATTaGGGGAACCAAATATCTCCT +
Preference number: 4 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYLVSEN*GNQISP
Trigger: AGGAGATATTTGGTTCCCTCAATTCTCTGAAACAAG...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR GCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGGTCACAGTAGTCGTATaGTGCCTTGGGGTCTCCTGT +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELVTVVV*CLGVSC
Trigger: ACAGGAGACCCCAAGGCAGCATACGACTACTGTGAC...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAAGAATATTATCTCCTaGATCACCCTGGATGCTTTC +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLKNIIS*ITLDAF
Trigger: GAAAGCATCCAGGGTGATGCAGGAGATAATATTCTT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCAAAACCTTCTTCAACTaGATTTGGCTCATTCGATCC +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLKTFFN*IWLIRS
Trigger: GGATCGAATGAGCCAAATCCAGTTGAAGAAGGTTTT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTATGTTCGTGCTGGGTTaGTCTGTGTGCCCATGGGAA +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIMFVLG*SVCPWE
Trigger: TTCCCATGGGCACACAGACCAACCCAGCACGAACAT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTCCAATATTCACCATCTaGGAAGTCGGGATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: YINDGYLINFRSIDLNHCPIFTI*EVGMAE
Trigger: CTCAGCCATCCCGACTTCCCAGATGGTGAATATTGG...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAAGCTGTGCTGTGTCATaGAAAGCCATAGAATTTTTG +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLESCAVS*KAIEFL
Trigger: CAAAAATTCTATGGCTTTCCATGACACAGCACAGCT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCCCCACTGGAGAATTGTaGAAATCTAATGCTTTTAGT +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLPTGEL*KSNAFS
Trigger: ACTAAAAGCATTAGATTTTCACAATTCTCCAGTGGG...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCTCCTGGAAATAGCTaGTTTGTTGGGGCGCTGATT +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPPGNS*FVGALI
Trigger: AATCAGCGCCCCAACAAAGCAGCTATTTCCAGGAGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGACAGTAGTCGTATGCTaGCTTGGGGTCTCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELTVVVC*LGVSCD
Trigger: ATCACAGGAGACCCCAAGGCAGCATACGACTACTGT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGGAGATCAGAATCCCTaGCGTCTACTCCTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIGDQNP*RLLLCS
Trigger: GGAACAAAGGAGTAGACGGCAGGGATTCTGATCTCC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGTCGGGATGGCTGAGTTaGAGGTCTTTGCATGTTCGT +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSGWLS*RSLHVR
Trigger: ACGAACATGCAAAGACCTGCAACTCAGCCATCCCGA...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCAATATTCACCATCTaGGAAGTCGGGATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPIFTI*EVGMAE
Trigger: CTCAGCCATCCCGACTTCCCAGATGGTGAATATTGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAATCACCTGAACAACCTTaGTTAGGATCAATCCAATAT +
Preference number: 4 (lower is better)
Translates to: IVMKSELGGIESHVQVLESPEQP*LGSIQY
Trigger: ATATTGGATTGATCCTAACCAAGGTTGTTCAGGTGA...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGCTCCTTTGGCCACGATaGAATTCTTACTCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELLLWPR*NSYSLR
Trigger: TCTGAGGGAGTAAGAATTTCATCGTGGCCAAAGGAG...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCATTTGCCTCTGTTTGTaGTACTGTTTCTTCAGTAAA +
Preference number: 4 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLICLCL*YCFFSK
Trigger: TTTACTGAAGAAACAGTAGCACAAACAGAGGCAAAT...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTTTTTATCCGGATAGATaGATGTCTCACCACCAGCTG +
Preference number: 4 (lower is better)
Translates to: YINDGYLINFRSIDLNHCFYPDR*MSHHQL
Trigger: CAGCTGGTGGTGAGACATGCATCTATCCGGATAAAA...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGTCCAGTGGATCCCTTTaGACCTTGTCTTCCTGGATA +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSSGSL*TLSSWI
Trigger: TATCCAGGAAGACAAGGTCCAAAGGGATCCACTGGA...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTCCTTTGCTGCCCTTTTaGCCTGGTTCACCAATTTCA +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIPLLPF*PGSPIS
Trigger: TGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGG...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGACTGTACCAACTTCCTaGTTTCTCCTTTGGCCACGA +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELTVPTS*FLLWPR
Trigger: TCGTGGCCAAAGGAGAAACCAGGAAGTTGGTACAGT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR GCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGCACCTTTTTCTCCTTaGCTTCCTTCTGAACCTGAA +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIAPFSP*LPSEPE
Trigger: TTCAGGTTCAGAAGGAAGGCAAGGAGAAAAAGGTGC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTCTTGTTTCAGAGAATTaGGGGAACCAAATATCTCCT +
Preference number: 4 (lower is better)
Translates to: YINDGYLINFRSIDLNHCLVSEN*GNQISP
Trigger: AGGAGATATTTGGTTCCCTCAATTCTCTGAAACAAG...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR TCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGCATCATACAAAGCTTTaGTGTGTGGGTTGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELHHTKL*CVGCSH
Trigger: ATGAGAACAACCCACACATCAAAGCTTTGTATGATG...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CCA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGTGGGTTTTCCAGTGTaGTCTTCAAATAGAAAAACG +
Preference number: 4 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIVGFPV*SSNRKT
Trigger: CGTTTTTCTATTTGAAGACCACACTGGAAAACCCAC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR TCA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGTTGTTCCAAATACCATaGTTCCATTGGTATCGACTA +
Preference number: 4 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELLFQIP*FHWYRL
Trigger: TAGTCGATACCAATGGAATCATGGTATTTGGAACAA...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 90 bp GGGGCCTGGACGTCCTGGCAAACCAATTGGGCCTGCTGTGCCTGCTaGGCCTCGCTCTCCAGGAGAGCCAACTGGACCCTGTGGGCCCTG +
Preference number: 5 (lower is better)
Translates to: GAWTSWQTNWACCAC*ASLSRRANWTLWAL
Trigger: CAGGGCCCACAGGGTCCAGTTGGCTCTCCTGGAGAGCGAGGCTCAGCAGGCACAGCAGGCCCAATTGGTTTGCCAGGACGTCCAGGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 90 bp GCTGAGCCTCGCTCTCCAGGAGAGCCAACTGGACCCTGTGGGCCCTaGGGACCTTCTCCTCCTTTCAGCCCAGGTGCACCCTGGGCTCCA +
Preference number: 5 (lower is better)
Translates to: AEPRSPGEPTGPCGP*GPSPPFSPGAPWAP
Trigger: TGGAGCCCAGGGTGCACCTGGGCTGAAAGGAGGAGAAGGTCCCCAGGGCCCACAGGGTCCAGTTGGCTCTCCTGGAGAGCGAGGCTCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS GCA 90 bp GACCCTGGGGGCCTGGACGTCCTGGCAAACCAATTGGGCCTGCTGTaGCTGCTGAGCCTCGCTCTCCAGGAGAGCCAACTGGACCCTGTG +
Preference number: 5 (lower is better)
Translates to: DPGGLDVLANQLGLL*LLSLALQESQLDPV
Trigger: CACAGGGTCCAGTTGGCTCTCCTGGAGAGCGAGGCTCAGCAGGCACAGCAGGCCCAATTGGTTTGCCAGGACGTCCAGGCCCCCAGGGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGGGACCTGTGGGCCTGCACGGCCTTaGGGGCCTTCAGGGCCATCT +
Preference number: 5 (lower is better)
Translates to: LTSWSLWSYHTSWSRGTCGPARP*GPSGPS
Trigger: AGATGGCCCTGAAGGCCCCAAAGGCCGTGCAGGCCC...ACAGGTCCCCCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS CCA 90 bp CACCACCTGAAGTACCCTTCGGACCAGGTTTTCCCGTGGGACCTCTaGCGCCTCTGGAACCTCGAGGACCCGTTGGACCACGCTGTCCCC +
Preference number: 5 (lower is better)
Translates to: HHLKYPSDQVFPWDL*RLWNLEDPLDHAVP
Trigger: GGGGACAGCGTGGTCCAACGGGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAAAACCTGGTCCGAAGGGTACTTCAGGTGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000211802.2
CDS CCA 90 bp GGACCTGGAGGCCCGGGAGGCCCTGGCATACCACTGTCACCCTTCTaGCCAGTAGGTCCAGATGATCCTTTGTTACCCTTCGGGCCAGCG +
Preference number: 5 (lower is better)
Translates to: GPGGPGGPGIPLSPF*PVGPDDPLLPFGPA
Trigger: CGCTGGCCCGAAGGGTAACAAAGGATCATCTGGACCTACTGGCCAGAAGGGTGACAGTGGTATGCCAGGGCCTCCCGGGCCTCCAGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp AGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCAGGGACCTGGGTCTCCAGTaGGGCCTGCACGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: RTSLTSWSLWSYHTSWSRDLGLQ*GLHGLW
Trigger: CCAAAGGCCGTGCAGGCCCAACTGGAGACCCAGGTC...CCTGGACCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS CCA 90 bp TCTCTCTCCTTTGAGACCACCAGAGCCAGCTTCCCCAGGGGGCCCTaGGTTCCCTGCTTCTCCAGGTTCACCCTTGTCTCCCACAACACC +
Preference number: 5 (lower is better)
Translates to: SLSFETTRASFPRGP*VPCFSRFTLVSHNT
Trigger: GGTGTTGTGGGAGACAAGGGTGAACCTGGAGAAGCAGGGAACCCAGGGCCCCCTGGGGAAGCTGGCTCTGGTGGTCTCAAAGGAGAGAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp ACCTATAGGACCAGTCTCACCAGTTGGTCCCTGTGGTCCTACCACACCTCCTGGTCCTCTTGGGCCAACTaGACCCACCTCGCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: TYRTSLTSWSLWSYHTSWSSWAN*THLASV
Trigger: GACAGAGGCGAGGTGGGTCAAGTTGGCCCAAGAGGA...CCAGGAGGTGTGGTAGGACCACAGGGACCAACTGGTGAGACTGGTCCTATAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGGGTCCCGGGTTCCCCTaGGGCCCATCATCACCTGGT +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMGPGFP*GPSSPG
Trigger: ACCAGGTGATGATGGGCCCAAGGGGAACCCGGGACC...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS CCA 90 bp GTCCTTTGGAGCCGTCACCCCCATAGCGGAATGGTAACATCAGCATaGTTCCAGGAGGTCCAGGTAAACCATCAGCCCCTGGTAAGCCAG +
Preference number: 5 (lower is better)
Translates to: VLWSRHPHSGMVTSA*FQEVQVNHQPLVSQ
Trigger: CTGGCTTACCAGGGGCTGATGGTTTACCTGGACCTCCTGGAACCATGCTGATGTTACCATTCCGCTATGGGGGTGACGGCTCCAAAGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CCA 90 bp GAATCGCCTGAGCTTGGGCTTCCTGTGCAGAGATTGTTGGTCCTTTaGAGCCGTCACCCCCATAGCGGAATGGTAACATCAGCATGGTTC +
Preference number: 5 (lower is better)
Translates to: ESPELGLPVQRLLVL*SRHPHSGMVTSAWF
Trigger: GAACCATGCTGATGTTACCATTCCGCTATGGGGGTGACGGCTCCAAAGGACCAACAATCTCTGCACAGGAAGCCCAAGCTCAGGCGATTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGAGGGCCAATTGGGCCTaGTGGACCAGGAAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMRANWA*WTRKSL
Trigger: CAAGGACTTCCTGGTCCACAAGGCCCAATTGGCCCT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGGGCCTGCACGGCCTTaGGGGCCTTCAGGGCCATCT +
Preference number: 5 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYGPARP*GPSGPS
Trigger: AGATGGCCCTGAAGGCCCCAAAGGCCGTGCAGGCCC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 90 bp TCTTTCACCTGGGAAACCGCGTATTCCTGCTGGTCCATCTTTTCCTaGGATACCTTGAGGCCCGGGATCACCCTTTGCACCTTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: SFTWETAYSCWSIFS*DTLRPGITLCTFFP
Trigger: GGGAAAGAAGGTGCAAAGGGTGATCCCGGGCCTCAAGGTATCTCAGGAAAAGATGGACCAGCAGGAATACGCGGTTTCCCAGGTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGGTCCCGGGTTCCCCTaGGGCCCATCATCACCTGGT +
Preference number: 5 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYGPGFP*GPSSPG
Trigger: ACCAGGTGATGATGGGCCCAAGGGGAACCCGGGACC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS CCA 90 bp AGGAGGACCATTTTCGCCTTTGTCACCTTTGCTGCCCTTTTGGCCTaGTTCACCAATTTCACCCTTGTCTCCATCTTCTCCAGGAGAGCC +
Preference number: 5 (lower is better)
Translates to: RRTIFAFVTFAALLA*FTNFTLVSIFSRRA
Trigger: GGCTCTCCTGGAGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 90 bp GGACCAGGAGGACCATTTTCGCCTTTGTCACCTTTGCTGCCCTTTTaGCCTGGTTCACCAATTTCACCCTTGTCTCCATCTTCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: GPGGPFSPLSPLLPF*PGSPISPLSPSSPG
Trigger: TCCTGGAGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCCTCCTGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATTCCAGGCTTTCCCGTaGGACCAGGAGGACCTTGGA +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSFQAFP*DQEDLG
Trigger: TCCAAGGTCCTCCTGGTCCAACGGGAAAGCCTGGAA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CAGTTTTCCTCTCTTAAATTCACTGTACCAACTTCCTGGTTTCTCCTTTGGCCAAGCTCCATTGGGACCTaGAGGGCCTCGTGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: QFSSLKFTVPTSWFLLWPSSIGT*RASWAR
Trigger: CCTGGCCCACGAGGCCCTCAAGGTCCCAATGGAGCT...TGGCCAAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCAGGGGGACCTGGTaGTCCTGGATCTCCATCTTC +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTRGTW*SWISIF
Trigger: GAAGATGGAGATCCAGGACAACCAGGTCCCCCTGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTGTCCCTTTTCACCCTaGGATCCAGGGTCACCTTTG +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMCPFSP*DPGSPL
Trigger: CAAAGGTGACCCTGGATCCAAGGGTGAAAAGGGACA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATTGTAGGTGAAGTTTaGCCGGGCAGAGGCAGTCAG +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMIVGEV*PGRGSQ
Trigger: CTGACTGCCTCTGCCCGGCAAAACTTCACCTACAAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 90 bp TCCTCTGACCTCTCTAGCTTGGAAGAGAAAAGTCAAGGCGAGGGTTaGGATGGTGAGATCCCAGATCCACCGTTTCGTTTTCCACCTGGA +
Preference number: 5 (lower is better)
Translates to: SSDLSSLEEKSQGEG*DGEIPDPPFRFPPG
Trigger: TCCAGGTGGAAAACGAAACGGTGGATCTGGGATCTCACCATCTCAACCCTCGCCTTGACTTTTCTCTTCCAAGCTAGAGAGGTCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS GCA 90 bp CCTTCAACAAGCATCCCGGGTTCAACCACAGCCGGTTCCCCCTTCTaGCCTTTCTCTCCATATGCACCATGTCCATTTATGCTTGTTTCT +
Preference number: 5 (lower is better)
Translates to: PSTSIPGSTTAGSPF*PFSPYAPCPFMLVS
Trigger: AGAAACAAGCATAAATGGACATGGTGCATATGGAGAGAAAGGGCAGAAGGGGGAACCGGCTGTGGTTGAACCCGGGATGCTTGTTGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGCTGCCGTCTACTCCTTaGTTCCCGTACAGAATATCC +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMLPSTP*FPYRIS
Trigger: GGATATTCTGTACGGGAACAAAGGAGTAGACGGCAG...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGTCCTGGAGTTCCCCTaGGTCCCAGCAAGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYVLEFP*VPASLL
Trigger: CAAGAGGCTTGCTGGGACCAAGGGGAACTCCAGGAC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATTCCTCTTGGGCCAACTaGACCCACCTCGCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYSSWAN*THLASV
Trigger: GACAGAGGCGAGGTGGGTCAAGTTGGCCCAAGAGGA...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGATCCAGTGGATCCCTTaGGACCTTGTCTTCCTGGAT +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMIQWIP*DLVFLD
Trigger: ATCCAGGAAGACAAGGTCCAAAGGGATCCACTGGAT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGGGACCTGTCTTGCCTaGAAATCCAGTCTCACCACG +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSGTCLA*KSSLTT
Trigger: CGTGGTGAGACTGGATTTCAAGGCAAGACAGGTCCC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGAGACCCACAGGGCCTaGGACACCATCTCTACCTGC +
Preference number: 5 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLETHRA*DTISTC
Trigger: GCAGGTAGAGATGGTGTCCAAGGCCCTGTGGGTCTC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCACCTCCAACACCATCTaGCCCTGCAGGACCAGGTTC +
Preference number: 5 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTATSNTI*PCRTRF
Trigger: GAACCTGGTCCTGCAGGGCAAGATGGTGTTGGAGGT...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAGTCGGGATGGCTGAGTaGCAGGTCTTTGCATGTTCG +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSVGMAE*QVFACS
Trigger: CGAACATGCAAAGACCTGCAACTCAGCCATCCCGAC...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS TCA 90 bp ACTGATTGCGACCCGGTGCCACTTGCCATCAGCAATGTTAACTGTTaGGAAGAGAGGATAGTTTTCCGGTGTGGGTTTTCCAGTGTGGTC +
Preference number: 5 (lower is better)
Translates to: TDCDPVPLAISNVNC*EERIVFRCGFSSVV
Trigger: GACCACACTGGAAAACCCACACCGGAAAACTATCCTCTCTTCTCAACAGTTAACATTGCTGATGGCAAGTGGCACCGGGTCGCAATCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CCA 90 bp CAGGTGCATACTCATCAATGTGAGGCTCCTGAGCCTGGGCAGCCTTaGATGTTAAGTCACAATCTGGACTGTAATGGTCACAGTAGTCGT +
Preference number: 5 (lower is better)
Translates to: QVHTHQCEAPEPGQP*MLSHNLDCNGHSSR
Trigger: ACGACTACTGTGACCATTACAGTCCAGATTGTGACTTAACATCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAGTATGCACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGTCCCAGCAAGCCTCTaGGACCAGCTTCACCTGGAA +
Preference number: 5 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLVPASL*DQLHLE
Trigger: TTCCAGGTGAAGCTGGTCCAAGAGGCTTGCTGGGAC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAATGGTCCAGGCTCCCCTaGGGGACCCATGTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEWSRLP*GTHVSF
Trigger: AAAGGAAACATGGGTCCCCAAGGGGAGCCTGGACCA...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCGAATCCAACTGGACCTaGAGGTCCTTGAGGGCCCCT +
Preference number: 5 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLESNWT*RSLRAP
Trigger: AGGGGCCCTCAAGGACCTCAAGGTCCAGTTGGATTC...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGACCAGTCTCACCAGTaGGTCCCTGTGGTCCTACCA +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEDQSHQ*VPVVLP
Trigger: TGGTAGGACCACAGGGACCAACTGGTGAGACTGGTC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAACCTCCAACACCATCTaGCCCTGCAGGACCAGGTTC +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLETSNTI*PCRTRF
Trigger: GAACCTGGTCCTGCAGGGCAAGATGGTGTTGGAGGT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAAGTGCTTTGTCATAACTTCCTGATAATACGTCATACCAGGCAGCTGACTGATAGCACCTGGGAGACCTaGTTCTCCCACAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: EVLCHNFLIIRHTRQLTDSTWET*FSHRTR
Trigger: CCTGGTCCTGTGGGAGAACAAGGTCTCCCAGGTGCT...ATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAACATGTTCGTGCTGGGTaGGTCTGTGTGCCCATGGGA +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEHVRAG*VCVPMG
Trigger: TCCCATGGGCACACAGACCAACCCAGCACGAACATG...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS GCA 90 bp GTCTGTCTCCCCATATTCATAGTCATACTCGATTATATCCTCAGGTaGATACTCATCAATGTGAGGCTCCTGAGCCTGGGCAGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: VCLPIFIVILDYILR*ILINVRLLSLGSLG
Trigger: TCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAGTATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ACACTACCTTACATCGTCATAACTACCAAAACCTCTTTCCTCTGTCTGTGCCTCCCTGTGCAGAGATTGTaGGTCCTTTGGAGCCGTCAC +
Preference number: 5 (lower is better)
Translates to: TLPYIVITTKTSFLCLCLPVQRL*VLWSRH
Trigger: GTGACGGCTCCAAAGGACCAACAATCTCTGCACAGG...GAGGCACAGACAGAGGAAAGAGGTTTTGGTAGTTATGACGATGTAAGGTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACCTTTGCTGCCCTTTaGGCCTGGTTCACCAATTTC +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTFAAL*AWFTNF
Trigger: GAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGTCGGGATGGCTGAGTaGCAGGTCTTTGCATGTTCG +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEVGMAE*QVFACS
Trigger: CGAACATGCAAAGACCTGCAACTCAGCCATCCCGAC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGTTTCCTTTTGGTCCTaGGGGGCCATCTATACCTCC +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEVSFWS*GAIYTS
Trigger: GGAGGTATAGATGGCCCCCAAGGACCAAAAGGAAAC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGTCCTTATTCAAAACTTGCATGTGGCGTAAAATGGTTGGTGGCACCAAGGTATGACCCATGTTTCCTTTaGGTCCTTGGGGGCCATCTA +
Preference number: 5 (lower is better)
Translates to: RPYSKLACGVKWLVAPRYDPCFL*VLGGHL
Trigger: TAGATGGCCCCCAAGGACCAAAAGGAAACATGGGTC...ATACCTTGGTGCCACCAACCATTTTACGCCACATGCAAGTTTTGAATAAGGACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGACCTGGGTCTCCAGTaGGGCCTGCACGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIDLGLQ*GLHGLW
Trigger: CCAAAGGCCGTGCAGGCCCAACTGGAGACCCAGGTC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCATCACCAATTTCACCCTaGTCTCCATCTTCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSSPISP*SPSSPG
Trigger: TCCTGGAGAAGATGGAGACAAGGGTGAAATTGGTGA...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGAGCTCCATTGGGACCTaGAGGGCCTCGTGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSSIGT*RASWAR
Trigger: CCTGGCCCACGAGGCCCTCAAGGTCCCAATGGAGCT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGTCTGGTAAGGTTCCATaGTTCCATAGTTGTAGTCTT +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMSGKVP*FHSCSL
Trigger: AAGACTACAACTATGGAACAATGGAACCTTACCAGA...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAGCCCTCATCACCTTTTaGTCCAAACATTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLEALITF*SKHSLL
Trigger: CAGCAGGGAATGTTTGGACAAAAAGGTGATGAGGGC...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp GAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAATGGACACAGGGATGAATATTTGCCTCTGTTaGTGCTACTGTTTCTTCAGT +
Preference number: 5 (lower is better)
Translates to: ELGGIESHVQVLEMDTGMNICLC*CYCFFS
Trigger: ACTGAAGAAACAGTAGCACAAACAGAGGCAAATATT...CATCCCTGTGTCCATTTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTGCCCGGGATCACCCTTaGCACCTTCTTTCCCTGCAG +
Preference number: 5 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIARDHP*HLLSLQ
Trigger: CTGCAGGGAAAGAAGGTGCAAAGGGTGATCCCGGGC...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGAGCACCTGGGAGACCTaGTTCTCCCACAGGACCAGG +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSTWET*FSHRTR
Trigger: CCTGGTCCTGTGGGAGAACAAGGTCTCCCAGGTGCT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTCATGTTCGTGCTGGGTaGGTCTGTGTGCCCATGGGA +
Preference number: 5 (lower is better)
Translates to: YINDGYLINFRSIDLNHCHVRAG*VCVPMG
Trigger: TCCCATGGGCACACAGACCAACCCAGCACGAACATG...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS GCA 90 bp AATCATATTCACCTAAATCTCCATCTACCAGGAGATCAGAATCCCTaGCGTCTACTCCTTTGTTCCCGTACAGAATATCCTCGGAAGTGT +
Preference number: 5 (lower is better)
Translates to: NHIHLNLHLPGDQNP*RLLLCSRTEYPRKC
Trigger: ACACTTCCGAGGATATTCTGTACGGGAACAAAGGAGTAGACGGCAGGGATTCTGATCTCCTGGTAGATGGAGATTTAGGTGAATATGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS-3UTR CAA 90 bp ATTGTCATGAAATCTGAGCTGGGTGGGATTGAGAGTCACGTGCAAGTTTTGGAAAACCTCAACACCGAGTaGCTGAATGCCATGTTCATT +
Preference number: 5 (lower is better)
Translates to: IVMKSELGGIESHVQVLENLNTE*LNAMFI
Trigger: AATGAACATGGCATTCAGCAACTCGGTGTTGAGGTT...TTCCAAAACTTGCACGTGACTCTCAATCCCACCCAGCTCAGATTTCATGACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTAGGTCCTGGATTTCCTaGCTGACCTGGTGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIRSWIS*LTWWSR
Trigger: CCTGGACCACCAGGTCAGCAAGGAAATCCAGGACCT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGACCAGGGGGACCTGGTaGTCCTGGATCTCCATCTTC +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELTRGTW*SWISIF
Trigger: GAAGATGGAGATCCAGGACAACCAGGTCCCCCTGGT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp GAGAATCAAGAATTAGCCCCATTGCCATCTCCGCCACACTACCTTACATCGTCAACATTTCCTCATCATTaGATCCCAGAAATCGAAGTG +
Preference number: 5 (lower is better)
Translates to: ENQELAPLPSPPHYLTSSTFPHH*IPEIEV
Trigger: CACTTCGATTTCTGGGATCAAATGATGAGGAAATGT...TGACGATGTAAGGTAGTGTGGCGGAGATGGCAATGGGGCTAATTCTTGATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp CGGAGTATTGATCTCAATCACTGTCTTTTCATAGCCTTTTCGAGACGCACAGCCAAAGCCATAGAATTTTaGAGAGCAAGCAGGTGCCTA +
Preference number: 5 (lower is better)
Translates to: RSIDLNHCLFIAFSRRTAKAIEF*RASRCL
Trigger: TAGGCACCTGCTTGCTCTCAAAAATTCTATGGCTTT...GGCTGTGCGTCTCGAAAAGGCTATGAAAAGACAGTGATTGAGATCAATACTCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS CCA 90 bp TCCATTTATGCTTGTTTCTGTGAAATCAGTTTCTGCTGGGACACCTaGGCCAAATTCTTCATTAGGGGAGGTCGTAGTCCTTTCTTCATA +
Preference number: 5 (lower is better)
Translates to: SIYACFCEISFCWDT*AKFFIRGGRSPFFI
Trigger: TATGAAGAAAGGACTACGACCTCCCCTAATGAAGAATTTGGCCCAGGTGTCCCAGCAGAAACTGATTTCACAGAAACAAGCATAAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS-3UTR CAA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTCTGAGTTGCAGGTCTTaGCATGTTCGTGCTGGGTTG +
Preference number: 5 (lower is better)
Translates to: YINDGYLINFRSIDLNHCLSCRS*HVRAGL
Trigger: CAACCCAGCACGAACATGCAAAGACCTGCAACTCAG...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGCTTCCTGTGCAGAGATaGTTGGTCCTTTGGAGCCGT +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELLPVQR*LVLWSR
Trigger: ACGGCTCCAAAGGACCAACAATCTCTGCACAGGAAG...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGAAGAATCGCCTGAGCTaGGGCTTCCTGTGCAGAGAT +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELKNRLS*GFLCRD
Trigger: ATCTCTGCACAGGAAGCCCAAGCTCAGGCGATTCTT...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTAAGCCCTGGTTTTCCTaGTGGCCCTTTTTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: IATCLRKKMTNPGRQDLIKPWFS*WPFFSW
Trigger: CCAGGAGAAAAAGGGCCACAAGGAAAACCAGGGCTT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTGCCCTCATCACCTTTTaGTCCAAACATTCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: YINDGYLINFRSIDLNHCALITF*SKHSLL
Trigger: CAGCAGGGAATGTTTGGACAAAAAGGTGATGAGGGC...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGCTGAGTTGCAGGTCTTaGCATGTTCGTGCTGGGTTG +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELLSCRS*HVRAGL
Trigger: CAACCCAGCACGAACATGCAAAGACCTGCAACTCAG...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 90 bp CACCCTGGAAAACATCTGTTTCTAAAATTCTTGTTCCAAATACCATaGTTCCATTGGTATCGACTATCGATCTCTCACTTCTATCGAGGG +
Preference number: 5 (lower is better)
Translates to: HPGKHLFLKFLFQIP*FHWYRLSISHFYRG
Trigger: CCCTCGATAGAAGTGAGAGATCGATAGTCGATACCAATGGAATCATGGTATTTGGAACAAGAATTTTAGAAACAGATGTTTTCCAGGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS-3UTR CAA 90 bp TACATCAATGATGGGTACCTGATCAATTTTCGGAGTATTGATCTCAATCACTGTTCTTGTTTCAGAGAATaGAGGGAACCAAATATCTCC +
Preference number: 5 (lower is better)
Translates to: YINDGYLINFRSIDLNHCSCFRE*REPNIS
Trigger: GGAGATATTTGGTTCCCTCAATTCTCTGAAACAAGA...ACAGTGATTGAGATCAATACTCCGAAAATTGATCAGGTACCCATCATTGATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184978.2
CDS GCA 90 bp TTCCATTGTTCCATAGTTGTAGTCTTGAAAATCATCCACAATATTTaGCTCTGTTTGTGCTACTGTTTCTTCAGTAAAAGTAGGCATCTC +
Preference number: 5 (lower is better)
Translates to: FHCSIVVVLKIIHNI*LCLCYCFFSKSRHL
Trigger: GAGATGCCTACTTTTACTGAAGAAACAGTAGCACAAACAGAGGCAAATATTGTGGATGATTTTCAAGACTACAACTATGGAACAATGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp ATTGCAACCTGTTTAAGAAAGAAAATGACCAATCCAGGTAGACAAGACTTGATTAATCATCCACAATATTaGCCTCTGTTTGTGCTACTG +
Preference number: 5 (lower is better)
Translates to: IATCLRKKMTNPGRQDLINHPQY*PLFVLL
Trigger: CAGTAGCACAAACAGAGGCAAATATTGTGGATGATT...AATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTTAAACAGGTTGCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS-3UTR CAA 90 bp TCTGGATGGTCAAGTATGACAATCAAAAGTACTTTTGAACACAAGAGTGAATTGTCTTGTTTCAGAGAATaGAGGGAACCAAATATCTCC +
Preference number: 5 (lower is better)
Translates to: SGWSSMTIKSTFEHKSELSCFRE*REPNIS
Trigger: GGAGATATTTGGTTCCCTCAATTCTCTGAAACAAGA...CAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATACTTGACCATCCAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp TCGGACCAGGTTTTCCCGTGGGACCTCTGGCGCCTCTaGAACCTCGAGGACCCGTTGGACCACGCTGTCCCC +
Preference number: 6 (lower is better)
Translates to: SDQVFPWDLWRL*NLEDPLDHAVP
Trigger: GGGGACAGCGTGGTCCAACGGGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAAAACCTGGTCCGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000211802.2
CDS CAA 72 bp GAGGACCCTGGGGGCCTGGACGTCCTGGCAAACCAATaGGGCCTGCTGTGCCTGCTGAGCCTCGCTCTCCAG +
Preference number: 6 (lower is better)
Translates to: EDPGGLDVLANQ*GLLCLLSLALQ
Trigger: CTGGAGAGCGAGGCTCAGCAGGCACAGCAGGCCCAATTGGTTTGCCAGGACGTCCAGGCCCCCAGGGTCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp AACGGGTCCCGGGTTCCCCTTGGGCCCATCATCACCTaGTGGCCCCTTAATACCAGCAGGACCTGCAGCACC +
Preference number: 6 (lower is better)
Translates to: NGSRVPLGPIIT*WPLNTSRTCST
Trigger: GGTGCTGCAGGTCCTGCTGGTATTAAGGGGCCACCAGGTGATGATGGGCCCAAGGGGAACCCGGGACCCGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS TCA 72 bp ACGTCCTGGCAAACCAATTGGGCCTGCTGTGCCTGCTaGGCCTCGCTCTCCAGGAGAGCCAACTGGACCCTG +
Preference number: 6 (lower is better)
Translates to: TSWQTNWACCAC*ASLSRRANWTL
Trigger: CAGGGTCCAGTTGGCTCTCCTGGAGAGCGAGGCTCAGCAGGCACAGCAGGCCCAATTGGTTTGCCAGGACGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS GCA 72 bp TTGAGGCCCGGGATCACCCTTTGCACCTTCTTTCCCTaGAGCACCGGGAAGTCCTTGCTCGCCAGGAGGACC +
Preference number: 6 (lower is better)
Translates to: LRPGITLCTFFP*STGKSLLARRT
Trigger: GGTCCTCCTGGCGAGCAAGGACTTCCCGGTGCTGCAGGGAAAGAAGGTGCAAAGGGTGATCCCGGGCCTCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp AAGTACCCTTCGGACCAGGTTTTCCCGTGGGACCTCTaGCGCCTCTGGAACCTCGAGGACCCGTTGGACCAC +
Preference number: 6 (lower is better)
Translates to: KYPSDQVFPWDL*RLWNLEDPLDH
Trigger: GTGGTCCAACGGGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAAAACCTGGTCCGAAGGGTACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000211802.2
CDS CCA 72 bp ATCTATACCTCCGATACCAGGCTGCCCAGGGGGTCCTaGAGTTCCCCTTGGTCCCAGCAAGCCTCTTGGACC +
Preference number: 6 (lower is better)
Translates to: IYTSDTRLPRGS*SSPWSQQASWT
Trigger: GGTCCAAGAGGCTTGCTGGGACCAAGGGGAACTCCAGGACCCCCTGGGCAGCCTGGTATCGGAGGTATAGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp CATTCCATCATCGCCAGGGAGGCCAGGTGGACCTTGTaGACCTCTTTCTCCCCTGTGACCTTTGTCACCAGG +
Preference number: 6 (lower is better)
Translates to: HSIIAREARWTL*TSFSPVTFVTR
Trigger: CCTGGTGACAAAGGTCACAGGGGAGAAAGAGGTCCACAAGGTCCACCTGGCCTCCCTGGCGATGATGGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp AGGTGCACCCTGGGCTCCAGGAAGGCCTCTTTCACCTaGGAAACCGCGTATTCCTGCTGGTCCATCTTTTCC +
Preference number: 6 (lower is better)
Translates to: RCTLGSRKASFT*ETAYSCWSIFS
Trigger: GGAAAAGATGGACCAGCAGGAATACGCGGTTTCCCAGGTGAAAGAGGCCTTCCTGGAGCCCAGGGTGCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CAA 72 bp CCTCATTCCATCATCGCCAGGGAGGCCAGGTGGACCTaGTGGACCTCTTTCTCCCCTGTGACCTTTGTCACC +
Preference number: 6 (lower is better)
Translates to: PHSIIAREARWT*WTSFSPVTFVT
Trigger: GGTGACAAAGGTCACAGGGGAGAAAGAGGTCCACAAGGTCCACCTGGCCTCCCTGGCGATGATGGAATGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp AGCCGTCACCCCCATAGCGGAATGGTAACATCAGCATaGTTCCAGGAGGTCCAGGTAAACCATCAGCCCCTG +
Preference number: 6 (lower is better)
Translates to: SRHPHSGMVTSA*FQEVQVNHQPL
Trigger: CAGGGGCTGATGGTTTACCTGGACCTCCTGGAACCATGCTGATGTTACCATTCCGCTATGGGGGTGACGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CCA 72 bp TTCTCCCCTCATTCCATCATCGCCAGGGAGGCCAGGTaGACCTTGTGGACCTCTTTCTCCCCTGTGACCTTT +
Preference number: 6 (lower is better)
Translates to: FSPHSIIAREAR*TLWTSFSPVTF
Trigger: AAAGGTCACAGGGGAGAAAGAGGTCCACAAGGTCCACCTGGCCTCCCTGGCGATGATGGAATGAGGGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp ACAGGGCCTTGGACACCATCTCTACCTGCAGGACCCTaGGGACCCTTTTCTCCAGGAGCACCTTTTTCTCCA +
Preference number: 6 (lower is better)
Translates to: TGPWTPSLPAGP*GPFSPGAPFSP
Trigger: TGGAGAAAAAGGTGCTCCTGGAGAAAAGGGTCCCCAGGGTCCTGCAGGTAGAGATGGTGTCCAAGGCCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CAA 72 bp CTGTCACCCTTCTGGCCAGTAGGTCCAGATGATCCTTaGTTACCCTTCGGGCCAGCGGGACCTGGTAATCCT +
Preference number: 6 (lower is better)
Translates to: LSPFWPVGPDDP*LPFGPAGPGNP
Trigger: AGGATTACCAGGTCCCGCTGGCCCGAAGGGTAACAAAGGATCATCTGGACCTACTGGCCAGAAGGGTGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS TCA 72 bp TGGGAAACCGCGTATTCCTGCTGGTCCATCTTTTCCTaGGATACCTTGAGGCCCGGGATCACCCTTTGCACC +
Preference number: 6 (lower is better)
Translates to: WETAYSCWSIFS*DTLRPGITLCT
Trigger: GGTGCAAAGGGTGATCCCGGGCCTCAAGGTATCTCAGGAAAAGATGGACCAGCAGGAATACGCGGTTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 72 bp GATGTCCCTTTTCACCCTTGGATCCAGGGTCACCTTTaGGACCAGGTAAACCAGGAGGTCCCAGAGGACCAG +
Preference number: 6 (lower is better)
Translates to: DVPFHPWIQGHL*DQVNQEVPEDQ
Trigger: CTGGTCCTCTGGGACCTCCTGGTTTACCTGGTCTCAAAGGTGACCCTGGATCCAAGGGTGAAAAGGGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS CAA 72 bp GGATGTCCCTTTTCACCCTTGGATCCAGGGTCACCTTaGAGACCAGGTAAACCAGGAGGTCCCAGAGGACCA +
Preference number: 6 (lower is better)
Translates to: GCPFSPLDPGSP*RPGKPGGPRGP
Trigger: TGGTCCTCTGGGACCTCCTGGTTTACCTGGTCTCAAAGGTGACCCTGGATCCAAGGGTGAAAAGGGACATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS GCA 72 bp GTCGGGATGGCTGAGTTGCAGGTCTTTGCATGTTCGTaGTGGGTTGGTCTGTGTGCCCATGGGAAACTTCAT +
Preference number: 6 (lower is better)
Translates to: VGMAELQVFACS*WVGLCAHGKLH
Trigger: ATGAAGTTTCCCATGGGCACACAGACCAACCCAGCACGAACATGCAAAGACCTGCAACTCAGCCATCCCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS CCA 72 bp GAGCTTGGGCTTCCTGTGCAGAGATTGTTGGTCCTTTaGAGCCGTCACCCCCATAGCGGAATGGTAACATCA +
Preference number: 6 (lower is better)
Translates to: ELGLPVQRLLVL*SRHPHSGMVTS
Trigger: TGATGTTACCATTCCGCTATGGGGGTGACGGCTCCAAAGGACCAACAATCTCTGCACAGGAAGCCCAAGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CCA 72 bp GGGATGGCTGAGTTGCAGGTCTTTGCATGTTCGTGCTaGGTTGGTCTGTGTGCCCATGGGAAACTTCATGTG +
Preference number: 6 (lower is better)
Translates to: GMAELQVFACSC*VGLCAHGKLHV
Trigger: CACATGAAGTTTCCCATGGGCACACAGACCAACCCAGCACGAACATGCAAAGACCTGCAACTCAGCCATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000184978.2
CDS CAA 90 bp GGGACCAGGAGGACCATTTTCGCCTTTGTCACCTTTGCTGCCCTTTaGGCCTGGTTCACCAATTTCACCCTTGTCTCCATCTTCTCCAGG +
Preference number: 6 (lower is better)
Translates to: GTRRTIFAFVTFAAL*AWFTNFTLVSIFSR
Trigger: CCTGGAGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCCTCCTGGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 72 bp CTTGGAAGAGAAAAGTCAAGGCGAGGGTTGAGATGGTaGGATCCCAGATCCACCGTTTCGTTTTCCACCTGG +
Preference number: 6 (lower is better)
Translates to: LGREKSRRGLRW*DPRSTVSFSTW
Trigger: CCAGGTGGAAAACGAAACGGTGGATCTGGGATCTCACCATCTCAACCCTCGCCTTGACTTTTCTCTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS GCA 72 bp GACCAGGAGGACCATTTTCGCCTTTGTCACCTTTGCTaGCCTTTTGGCCTGGTTCACCAATTTCACCCTTGT +
Preference number: 6 (lower is better)
Translates to: DQEDHFRLCHLC*PFGLVHQFHPC
Trigger: ACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCCTCCTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 72 bp GACCCGGTGCCACTTGCCATCAGCAATGTTAACTGTTaGGAAGAGAGGATAGTTTTCCGGTGTGGGTTTTCC +
Preference number: 6 (lower is better)
Translates to: DPVPLAISNVNC*EERIVFRCGFS
Trigger: GGAAAACCCACACCGGAAAACTATCCTCTCTTCTCAACAGTTAACATTGCTGATGGCAAGTGGCACCGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS TCA 72 bp GGTCACAGTAGTCGTATGCTGCCTTGGGGTCTCCTGTaGTCAGGAACTGCTGAATATCACCCTGGAAAACAT +
Preference number: 6 (lower is better)
Translates to: GHSSRMLPWGLL*SGTAEYHPGKH
Trigger: ATGTTTTCCAGGGTGATATTCAGCAGTTCCTGATCACAGGAGACCCCAAGGCAGCATACGACTACTGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS TCA 72 bp TGGCACCTGGAAATCCAGGAAATCCAGTGGATCCAGTaGCATCTGAAAGCCTTTGGACCTTGTCTTCCTGGA +
Preference number: 6 (lower is better)
Translates to: WHLEIQEIQWIQ*HLKAFGPCLPG
Trigger: TCCAGGAAGACAAGGTCCAAAGGCTTTCAGATGTCACTGGATCCACTGGATTTCCTGGATTTCCAGGTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211802.2
CDS CCA 72 bp ACTCATCAATGTGAGGCTCCTGAGCCTGGGCAGCCTTaGATGTTAAGTCACAATCTGGACTGTAATGGTCAC +
Preference number: 6 (lower is better)
Translates to: THQCEAPEPGQP*MLSHNLDCNGH
Trigger: GTGACCATTACAGTCCAGATTGTGACTTAACATCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp GGACCATTTTCGCCTTTGTCACCTTTGCTGCCCTTTTaGCCTGGTTCACCAATTTCACCCTTGTCTCCATCT +
Preference number: 6 (lower is better)
Translates to: GPFSPLSPLLPF*PGSPISPLSPS
Trigger: AGATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CCA 72 bp TCTCATCAATGTGAGGCTCCTGAGCCTGGGCAGCCTTaGATGTTAAGTCACAATCTGGACTGTAATGGTCAC +
Preference number: 6 (lower is better)
Translates to: SHQCEAPEPGQP*MLSHNLDCNGH
Trigger: GTGACCATTACAGTCCAGATTGTGACTTAACATCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123619.8
CDS CAA 72 bp AGGACCATTTTCGCCTTTGTCACCTTTGCTGCCCTTTaGGCCTGGTTCACCAATTTCACCCTTGTCTCCATC +
Preference number: 6 (lower is better)
Translates to: RTIFAFVTFAAL*AWFTNFTLVSI
Trigger: GATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAATGGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS TCA 72 bp CTCTCTAGCTTGGAAGAGAAAAGTCAAGGCGAGGGTTaGGATGGTGAGATCCCAGATCCACCGTTTCGTTTT +
Preference number: 6 (lower is better)
Translates to: LSSLEEKSQGEG*DGEIPDPPFRF
Trigger: AAAACGAAACGGTGGATCTGGGATCTCACCATCTCAACCCTCGCCTTGACTTTTCTCTTCCAAGCTAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS GCA 72 bp GTCACAGTTTTCTTCTCCACACTGATTGCGACCCGGTaGCACTTGCCATCAGCAATGTTAACTGTTGAGAAG +
Preference number: 6 (lower is better)
Translates to: VTVFFSTLIATR*HLPSAMLTVEK
Trigger: CTTCTCAACAGTTAACATTGCTGATGGCAAGTGGCACCGGGTCGCAATCAGTGTGGAGAAGAAAACTGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CCA 72 bp ATTTTCGCCTTTGTCACCTTTGCTGCCCTTTTGGCCTaGTTCACCAATTTCACCCTTGTCTCCATCTTCTCC +
Preference number: 6 (lower is better)
Translates to: IFAFVTFAALLA*FTNFTLVSIFS
Trigger: GGAGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGCCAAAAGGGCAGCAAAGGTGACAAAGGCGAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CAA 72 bp GTTTTCTTCTCCACACTGATTGCGACCCGGTGCCACTaGCCATCAGCAATGTTAACTGTTGAGAAGAGAGGA +
Preference number: 6 (lower is better)
Translates to: VFFSTLIATRCH*PSAMLTVEKRG
Trigger: TCCTCTCTTCTCAACAGTTAACATTGCTGATGGCAAGTGGCACCGGGTCGCAATCAGTGTGGAGAAGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CAA 72 bp TCTACCAGGAGATCAGAATCCCTGCCGTCTACTCCTTaGTTCCCGTACAGAATATCCTCGGAAGTGTTTCTC +
Preference number: 6 (lower is better)
Translates to: STRRSESLPSTP*FPYRISSEVFL
Trigger: GAGAAACACTTCCGAGGATATTCTGTACGGGAACAAAGGAGTAGACGGCAGGGATTCTGATCTCCTGGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS CAA 90 bp AAATCTCCATCTACCAGGAGATCAGAATCCCTGCCGTCTACTCCTTaGTTCCCGTACAGAATATCCTCGGAAGTGTTTCTCTGGACATCA +
Preference number: 6 (lower is better)
Translates to: KSPSTRRSESLPSTP*FPYRISSEVFLWTS
Trigger: TGATGTCCAGAGAAACACTTCCGAGGATATTCTGTACGGGAACAAAGGAGTAGACGGCAGGGATTCTGATCTCCTGGTAGATGGAGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS TCA 72 bp AAAACCTTCTTCAACTGGATTTGGCTCATTCGATCCTaGTACCCGCCTAGGAGTCTCAGTCTGGTAAGGTTC +
Preference number: 6 (lower is better)
Translates to: KTFFNWIWLIRS*YPPRSLSLVRF
Trigger: GAACCTTACCAGACTGAGACTCCTAGGCGGGTATCAGGATCGAATGAGCCAAATCCAGTTGAAGAAGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092155.12
ENSMUST00000123619.8
CDS GCA 72 bp CCCATATTCATAGTCATACTCGATTATATCCTCAGGTaGATACTCATCAATGTGAGGCTCCTGAGCCTGGGC +
Preference number: 6 (lower is better)
Translates to: PIFIVILDYILR*ILINVRLLSLG
Trigger: GCCCAGGCTCAGGAGCCTCACATTGATGAGTATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092155.12
CDS CAA 72 bp TTCCATAGTTGTAGTCTTGAAAATCATCCACAATATTaGCCTGGACCCCTAGTTTGGCTTTGGCTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: FHSCSLENHPQY*PGPLVWLWLWL
Trigger: CAGCCACAGCCAAAGCCAAACTAGGGGTCCAGGCAAATATTGTGGATGATTTTCAAGACTACAACTATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123619.8