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Pregenerated sensors for COA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051671

Ensembl transcript IDs: ENSMUST00000059093.7, ENSMUST00000211868.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CAGAGAACAAGTGCTGATACACACTGTGACTCAAGCTaGTTTTGTCCTGGAATCATTTCTGCAAGTCCAGAG +
Preference number: 3 (lower is better)
Translates to: QRTSADTHCDSS*FCPGIISASPE
Trigger: CTCTGGACTTGCAGAAATGATTCCAGGACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGTTCTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
3UTR GCA 72 bp AAGGCAGTCCTTCATAGTTTGGATGATGAGATCTTTTaGTATTCCAACAATTTAGTAACTCTTGTTTACAGA +
Preference number: 3 (lower is better)
Translates to: KAVLHSLDDEIF*YSNNLVTLVYR
Trigger: TCTGTAAACAAGAGTTACTAAATTGTTGGAATAGCAAAAGATCTCATCATCCAAACTATGAAGGACTGCCTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR CCA 90 bp ACAAGTGCTGATACACACTGTGACTCAAGCTGCTTTTGTCCTGGAATCATTTCTGAGCTCCTCAGCTTCTaGCACCGGGCCGCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: TSADTHCDSSCFCPGIISELLSF*HRAASS
Trigger: GGAGGACGCGGCCCGGTGCCAGAAGCTGAGGAGCTC...AGAAATGATTCCAGGACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR CCA 90 bp CATTTCTGCAAGTCCAGAGGAGTAAATTCCACTTGTGTGAAAGTCCAGAAAGAGGAGCTCCTCAGCTTCTaGCACCGGGCCGCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: HFCKSRGVNSTCVKVQKEELLSF*HRAASS
Trigger: GGAGGACGCGGCCCGGTGCCAGAAGCTGAGGAGCTC...CTCTTTCTGGACTTTCACACAAGTGGAATTTACTCCTCTGGACTTGCAGAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR GCA 90 bp CAGAGAACAAGTGCTGATACACACTGTGACTCAAGCTGCTTTTGTCCTGGAATCGCACCCCAGCATGCCTaGCTTTCCTTCATGGAAGGG +
Preference number: 4 (lower is better)
Translates to: QRTSADTHCDSSCFCPGIAPQHA*LSFMEG
Trigger: CCCTTCCATGAAGGAAAGGCAGGCATGCTGGGGTGC...GATTCCAGGACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGTTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR GCA 90 bp TGGAATCATTTCTGCAAGTCCAGAGGAGTAAATTCCACTTGTGTGAAAGTCCAGGCGCGCACCCCAGCATaGCTGCCTTTCCTTCATGGA +
Preference number: 4 (lower is better)
Translates to: WNHFCKSRGVNSTCVKVQARTPA*LPFLHG
Trigger: TCCATGAAGGAAAGGCAGGCATGCTGGGGTGCGCGC...CTGGACTTTCACACAAGTGGAATTTACTCCTCTGGACTTGCAGAAATGATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR GCA 90 bp CATTTCTGCAAGTCCAGAGGAGTAAATTCCACTTGTGTGAAAGTCCAGAAAGAGGCGCGCACCCCAGCATaGCTGCCTTTCCTTCATGGA +
Preference number: 4 (lower is better)
Translates to: HFCKSRGVNSTCVKVQKEARTPA*LPFLHG
Trigger: TCCATGAAGGAAAGGCAGGCATGCTGGGGTGCGCGC...CTCTTTCTGGACTTTCACACAAGTGGAATTTACTCCTCTGGACTTGCAGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR CCA 90 bp TTACAGAGAACAAGTGCTGATACACACTGTGACTCAAGCTGCTTTTGTCCTGGATATTTTATCCACTGCTaGGGGCAGCTGGCCTCGAAC +
Preference number: 4 (lower is better)
Translates to: LQRTSADTHCDSSCFCPGYFIHC*GQLASN
Trigger: GTTCGAGGCCAGCTGCCCCCAGCAGTGGATAAAATA...TCCAGGACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGTTCTCTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR GCA 90 bp TTAATTAAGGCAGTCCTTCATAGTTTGGATGATGAGATCTTTTGCTATTCCAACGCACCCCAGCATGCCTaGCTTTCCTTCATGGAAGGG +
Preference number: 4 (lower is better)
Translates to: LIKAVLHSLDDEIFCYSNAPQHA*LSFMEG
Trigger: CCCTTCCATGAAGGAAAGGCAGGCATGCTGGGGTGC...GTTGGAATAGCAAAAGATCTCATCATCCAAACTATGAAGGACTGCCTTAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR CCA 90 bp TTTATGTGCAACTATATTTGCCTAATATGCAGCTCTTATTCCAAAGGGGGAAAGTATTTTATCCACTGCTaGGGGCAGCTGGCCTCGAAC +
Preference number: 4 (lower is better)
Translates to: FMCNYICLICSSYSKGGKYFIHC*GQLASN
Trigger: GTTCGAGGCCAGCTGCCCCCAGCAGTGGATAAAATA...CTTTCCCCCTTTGGAATAAGAGCTGCATATTAGGCAAATATAGTTGCACATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059093.7
CDS-3UTR GCA 90 bp TTTATGTGCAACTATATTTGCCTAATATGCAGCTCTTATTCCAAAGGGGGAAAGAAATATTTTATCCACTaGTGGGGGCAGCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: FMCNYICLICSSYSKGGKKYFIH*WGQLAS
Trigger: CGAGGCCAGCTGCCCCCAGCAGTGGATAAAATATTT...CTTTCCCCCTTTGGAATAAGAGCTGCATATTAGGCAAATATAGTTGCACATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000059093.7
CDS-3UTR GCA 90 bp AGAGAACAAGTGCTGATACACACTGTGACTCAAGCTGCTTTTGTCCTGGAATCAAGACTGGAATCCTCCTaGTTCAAATTTTTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: REQVLIHTVTQAAFVLESRLESS*FKFFLE
Trigger: TTCAAGGAAAAATTTGAAGCAGGAGGATTCCAGTCT...TGATTCCAGGACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGTTCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS-3UTR GCA 90 bp TCTTGTTTACAGAGAACAAGTGCTGATACACACTGTGACTCAAGCTGCTTTTGTAGACTGGAATCCTCCTaGTTCAAATTTTTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: SCLQRTSADTHCDSSCFCRLESS*FKFFLE
Trigger: TTCAAGGAAAAATTTGAAGCAGGAGGATTCCAGTCT...ACAAAAGCAGCTTGAGTCACAGTGTGTATCAGCACTTGTTCTCTGTAAACAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2
CDS CCA 72 bp TGGGGGCAGCTGGCCTCGAACGAGCTCCTCAGCTTCTaGCACCGGGCCGCGTCCTCCGCGTTGTCGTCCAGG +
Preference number: 6 (lower is better)
Translates to: WGQLASNELLSF*HRAASSALSSR
Trigger: CCTGGACGACAACGCGGAGGACGCGGCCCGGTGCCAGAAGCTGAGGAGCTCGTTCGAGGCCAGCTGCCCCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059093.7
ENSMUST00000211868.2