Pregenerated sensors for COA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044881Ensembl transcript IDs: ENSMUST00000054310.4, ENSMUST00000120454.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGATAGAGGCACTTATGTCACTGCGGAAACCGAGTTCACTCCTTTaGGTGTTGCTTTATTTCTGCCTGTCCCCTGAGTCTCTCAGCAAC | + |
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Preference number: 1 (lower is better) Translates to: KIEALMSLRKPSSLL*VLLYFCLSPESLSN Trigger: GTTGCTGAGAGACTCAGGGGACAGGCAGAAATAAAGCAACACTCAAAGGAGTGAACTCGGTTTCCGCAGTGACATAAGTGCCTCTATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR TCA 90 bp | TTGGGCAACCCGTATGTACTTATAAAGTACTTGGCACACAGTCACTaGGAGGTAGGGTGGAGGGAGTGTGGTTGTAAACACAAATATTGG | + |
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Preference number: 1 (lower is better) Translates to: LGNPYVLIKYLAHSH*EVGWRECGCKHKYW Trigger: CCAATATTTGTGTTTACAACCACACTCCCTCCACCCTACCTCTCAGTGACTGTGTGCCAAGTACTTTATAAGTACATACGGGTTGCCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCTACTAGCTCCCCCGACCCATTACACTGAAGAAGTGAGGAAAGATAGAGGCCCGAGTTCACTCCTTTaGGTGTTGCTTTATTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: SLLAPPTHYTEEVRKDRGPSSLL*VLLYFC Trigger: GCAGAAATAAAGCAACACTCAAAGGAGTGAACTCGG...GCCTCTATCTTTCCTCACTTCTTCAGTGTAATGGGTCGGGGGAGCTAGTAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR-3UTR GCA 90 bp | ATCATGCATTTAAGGTCATCCTTGGCTAATGTAAGTCTAAGATCAGTCTGGGCTACATCGCCAACGCAATaGCTTAGAAACACTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: IMHLRSSLANVSLRSVWATSPTQ*LRNTSC Trigger: ACAGGAAGTGTTTCTAAGGCATTGCGTTGGCGATGT...AGCCCAGACTGATCTTAGACTTACATTAGCCAAGGATGACCTTAAATGCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR CAA 90 bp | CACACTGAGAGAAGGCACTGTCAGTACTGCCAAACTAGCTCTGTGTaGATAGTGGCTCCATTTTCTAAAGGTCATAGTCTGTATTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: HTERRHCQYCQTSSV*IVAPFSKGHSLYFN Trigger: ATTAAAATACAGACTATGACCTTTAGAAAATGGAGCCACTATCAACACAGAGCTAGTTTGGCAGTACTGACAGTGCCTTCTCTCAGTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR GCA 72 bp | TGTCACTGCGGAAACCGAGTTCACTCCTTTGAGTGTTaGTTTATTTCTGCCTGTCCCCTGAGTCTCTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: CHCGNRVHSFEC*FISACPLSLSA Trigger: TGCTGAGAGACTCAGGGGACAGGCAGAAATAAAGCAACACTCAAAGGAGTGAACTCGGTTTCCGCAGTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR TCA 72 bp | ACTCCTTTGAGTGTTGCTTTATTTCTGCCTGTCCCCTaGGTCTCTCAGCAACGGGAAGGTCACGTTACTCTT | + |
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Preference number: 3 (lower is better) Translates to: TPLSVALFLPVP*VSQQREGHVTL Trigger: AAGAGTAACGTGACCTTCCCGTTGCTGAGAGACTCAGGGGACAGGCAGAAATAAAGCAACACTCAAAGGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR TCA 72 bp | GCACTTATGTCACTGCGGAAACCGAGTTCACTCCTTTaGGTGTTGCTTTATTTCTGCCTGTCCCCTGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: ALMSLRKPSSLL*VLLYFCLSPES Trigger: AGACTCAGGGGACAGGCAGAAATAAAGCAACACTCAAAGGAGTGAACTCGGTTTCCGCAGTGACATAAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| 3UTR CCA 72 bp | TTCTATTACTTAGGGTTTCTTCTTCCCAGGTCTCTCTaGGTGCTGATTTCGTCAGGCCCACTGTGTGAGATG | + |
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Preference number: 3 (lower is better) Translates to: FYYLGFLLPRSL*VLISSGPLCEM Trigger: CATCTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAGTAATAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTGAGGCCTGCACTTGCGGCTaGCACTGGCGCCAGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FLLPRSLWVLISSGPLCEACTCG*HWRQSW Trigger: CCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGC...CTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | CTTAGGGTTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTACTTGCGGCTGGCACTaGCGCCAGTCCTGGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LRVSSSQVSLGADFVRPTTCGWH*RQSWCW Trigger: CCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGT...AGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | CTTAGGGTTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGACCGGGTGATGAGCTaGTCCAGCGGGTCTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LRVSSSQVSLGADFVRPTDRVMS*SSGSSS Trigger: TGAGGAAGACCCGCTGGACCAGCTCATCACCCGGTC...AGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR GCA 90 bp | CTTAGGGTTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTTGCAAAGTGGGAGGCTaGACAGCCAGACCGGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LRVSSSQVSLGADFVRPTCKVGG*TARPGD Trigger: ATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCA...AGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTGAGCGCCAGTCCTGGTGTTaGGCCATGCACTCTTGCACT | + |
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Preference number: 4 (lower is better) Translates to: FLLPRSLWVLISSGPLCERQSWC*AMHSCT Trigger: AGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCG...CTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | GAGTGTTGCTTTATTTCTGCCTGTCCCCTGAGTCTCTCAGCAACGGGAAGGTCACACTGGCGCCAGTCCTaGTGTTGGGCCATGCACTCT | + |
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Preference number: 4 (lower is better) Translates to: ECCFISACPLSLSATGRSHWRQS*CWAMHS Trigger: AGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTG...TGACCTTCCCGTTGCTGAGAGACTCAGGGGACAGGCAGAAATAAAGCAACACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | TCCCTACTAGCTCCCCCGACCCATTACACTGAAGAAGTGAGGAAAGATAGAGGCTGCAAAGTGGGAGGCTaGACAGCCAGACCGGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: SLLAPPTHYTEEVRKDRGCKVGG*TARPGD Trigger: ATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCA...GCCTCTATCTTTCCTCACTTCTTCAGTGTAATGGGTCGGGGGAGCTAGTAGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | TTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTGAGCTCCTCCCTCCGTCTTaGCTGCTGTGCACTCATACA | + |
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Preference number: 4 (lower is better) Translates to: FLLPRSLWVLISSGPLCELLPPS*LLCTHT Trigger: TGTATGAGTGCACAGCAGGCAAGACGGAGGGAGGAG...CTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR GCA 90 bp | TCCCTACTAGCTCCCCCGACCCATTACACTGAAGAAGTGAGGAAAGATAGAGGCTGGGCCATGCACTCTTaGACTGCAAAGTGGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLLAPPTHYTEEVRKDRGWAMHS*TAKWEA Trigger: AGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCA...GCCTCTATCTTTCCTCACTTCTTCAGTGTAATGGGTCGGGGGAGCTAGTAGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | TTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTGAGCCTGGTGTTGGGCCATaGACTCTTGCACTGCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: FLLPRSLWVLISSGPLCEPGVGP*TLALQS Trigger: ACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGG...CTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | TCCCTACTAGCTCCCCCGACCCATTACACTGAAGAAGTGAGGAAAGATAGAGGCTCTTGCACTGCAAAGTaGGAGGCTGCACAGCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SLLAPPTHYTEEVRKDRGSCTAK*EAAQPD Trigger: GTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGA...GCCTCTATCTTTCCTCACTTCTTCAGTGTAATGGGTCGGGGGAGCTAGTAGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR CCA 90 bp | CACTGTCAGTACTGCCAAACTAGCTCTGTGTTGATAGTGGCTCCATTTTCTAAAGCCTGCACTTGCGGCTaGCACTGGCGCCAGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HCQYCQTSSVLIVAPFSKACTCG*HWRQSW Trigger: CCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGC...TTTAGAAAATGGAGCCACTATCAACACAGAGCTAGTTTGGCAGTACTGACAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | CCCGTATGTACTTATAAAGTACTTGGCACACAGTCACTGAGAGGTAGGGTGGAGCCTGGTGTTGGGCCATaGACTCTTGCACTGCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: PVCTYKVLGTQSLRGRVEPGVGP*TLALQS Trigger: ACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGG...CTCCACCCTACCTCTCAGTGACTGTGTGCCAAGTACTTTATAAGTACATACGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAAACTTGCGGCTGGCACTaGCGCCAGTCCTGGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKTCGWH*RQSWCW Trigger: CCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGT...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | ATGCATTTAAGGTCATCCTTGGCTAATGTAAGTCTAAGATCAGTCTGGGCTACAGACCGGGTGATGAGCTaGTCCAGCGGGTCTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: MHLRSSLANVSLRSVWATDRVMS*SSGSSS Trigger: TGAGGAAGACCCGCTGGACCAGCTCATCACCCGGTC...TGTAGCCCAGACTGATCTTAGACTTACATTAGCCAAGGATGACCTTAAATGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR CCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAACACTGGCGCCAGTCCTaGTGTTGGGCCATGCACTCT | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKHWRQS*CWAMHS Trigger: AGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTG...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR GCA 90 bp | CCCGAAGACTGTCCCCAGATTTTACACCACTTCTATTACTTAGGGTTTCTTCTTCTCCTCCCTCCGTCTTaGCTGCTGTGCACTCATACA | + |
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Preference number: 4 (lower is better) Translates to: PEDCPQILHHFYYLGFLLLLPPS*LLCTHT Trigger: TGTATGAGTGCACAGCAGGCAAGACGGAGGGAGGAG...AAGAAGAAACCCTAAGTAATAGAAGTGGTGTAAAATCTGGGGACAGTCTTCGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAACGCCAGTCCTGGTGTTaGGCCATGCACTCTTGCACT | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKRQSWC*AMHSCT Trigger: AGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCG...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR GCA 90 bp | TTGGAAAATGAAGGCCTGATTGGGCAACCCGTATGTACTTATAAAGTACTTGGCCATGCACTCTTGCACTaGAAAGTGGGAGGCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: LENEGLIGQPVCTYKVLGHALLH*KVGGCT Trigger: TGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATG...GCCAAGTACTTTATAAGTACATACGGGTTGCCCAATCAGGCCTTCATTTTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CCA 90 bp | ATCATGCATTTAAGGTCATCCTTGGCTAATGTAAGTCTAAGATCAGTCTGGGCTGGGCGAGTCCAGTTATaGCCTTGTGGGACTGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: IMHLRSSLANVSLRSVWAGRVQL*PCGTEV Trigger: AACCTCAGTCCCACAAGGCCATAACTGGACTCGCCC...AGCCCAGACTGATCTTAGACTTACATTAGCCAAGGATGACCTTAAATGCATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR CCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAAGGGCGAGTCCAGTTATaGCCTTGTGGGACTGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKGRVQL*PCGTEV Trigger: AACCTCAGTCCCACAAGGCCATAACTGGACTCGCCC...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR GCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAACATGCACTCTTGCACTaGAAAGTGGGAGGCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKHALLH*KVGGCT Trigger: TGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATG...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| 3UTR CAA 72 bp | GGTGGAGGCAGAAGGATCATGCATTTAAGGTCATCCTaGGCTAATGTAAGTCTAAGATCAGTCTGGGCTACA | + |
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Preference number: 4 (lower is better) Translates to: GGGRRIMHLRSS*ANVSLRSVWAT Trigger: TGTAGCCCAGACTGATCTTAGACTTACATTAGCCAAGGATGACCTTAAATGCATGATCCTTCTGCCTCCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | ATGCATTTAAGGTCATCCTTGGCTAATGTAAGTCTAAGATCAGTCTGGGCTACACCGTCTTGCCTGCTGTaGACTCATACAATCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: MHLRSSLANVSLRSVWATPSCLL*THTIPE Trigger: TTCAGGGATTGTATGAGTGCACAGCAGGCAAGACGG...TGTAGCCCAGACTGATCTTAGACTTACATTAGCCAAGGATGACCTTAAATGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR GCA 90 bp | CGCCAACGCAATGCCTTAGAAACACTTCCTGTGGTTAAATTTGTGATTGGAAAACCGTCTTGCCTGCTGTaGACTCATACAATCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: RQRNALETLPVVKFVIGKPSCLL*THTIPE Trigger: TTCAGGGATTGTATGAGTGCACAGCAGGCAAGACGG...TTTTCCAATCACAAATTTAACCACAGGAAGTGTTTCTAAGGCATTGCGTTGGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| 3UTR CAA 72 bp | AGAAGGCACTGTCAGTACTGCCAAACTAGCTCTGTGTaGATAGTGGCTCCATTTTCTAAAGGTCATAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RRHCQYCQTSSV*IVAPFSKGHSL Trigger: CAGACTATGACCTTTAGAAAATGGAGCCACTATCAACACAGAGCTAGTTTGGCAGTACTGACAGTGCCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS GCA 90 bp | CCTGCACTTGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATaGACTCTTGCACTGCAAAGTGGGAGGCTGCACAGCCAGACCGGG | + |
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Preference number: 5 (lower is better) Translates to: PALAAGTGASPGVGP*TLALQSGRLHSQTG Trigger: CCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 90 bp | TGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTaGACTGCAAAGTGGGAGGCTGCACAGCCAGACCGGGTGATGAGC | + |
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Preference number: 5 (lower is better) Translates to: CGWHWRQSWCWAMHS*TAKWEAAQPDRVMS Trigger: GCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 90 bp | TGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTGCACTGCAAAGTaGGAGGCTGCACAGCCAGACCGGGTGATGAGCTGGTCCAGCGGG | + |
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Preference number: 5 (lower is better) Translates to: WRQSWCWAMHSCTAK*EAAQPDRVMSWSSG Trigger: CCCGCTGGACCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 90 bp | GTCCTGGTGTTGGGCCATGCACTCTTGCACTGCAAAGTGGGAGGCTaGACAGCCAGACCGGGTGATGAGCTGGTCCAGCGGGTCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VLVLGHALLHCKVGG*TARPGDELVQRVFL Trigger: GAGGAAGACCCGCTGGACCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 90 bp | TCCCTCCGTCTTGCCTGCTGTGCACTCATACAATCCCTGAAGGCCTaGACTTGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATG | + |
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Preference number: 5 (lower is better) Translates to: SLRLACCALIQSLKA*TCGWHWRQSWCWAM Trigger: CATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGCAAGACGGAGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 90 bp | CAATCCCTGAAGGCCTGCACTTGCGGCTGGCACTGGCGCCAGTCCTaGTGTTGGGCCATGCACTCTTGCACTGCAAAGTGGGAGGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: QSLKACTCGWHWRQS*CWAMHSCTAKWEAA Trigger: TGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 90 bp | CGTCTTGCCTGCTGTGCACTCATACAATCCCTGAAGGCCTGCACTTaGGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCT | + |
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Preference number: 5 (lower is better) Translates to: RLACCALIQSLKACT*GWHWRQSWCWAMHS Trigger: AGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGCAAGACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 90 bp | GCCTGCTGTGCACTCATACAATCCCTGAAGGCCTGCACTTGCGGCTaGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTGCACT | + |
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Preference number: 5 (lower is better) Translates to: ACCALIQSLKACTCG*HWRQSWCWAMHSCT Trigger: AGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 90 bp | TGCACTGCAAAGTGGGAGGCTGCACAGCCAGACCGGGTGATGAGCTaGTCCAGCGGGTCTTCCTCATCATCATCCTTCTTCACCGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: CTAKWEAAQPDRVMS*SSGSSSSSSFFTGR Trigger: TCGCCCGGTGAAGAAGGATGATGATGAGGAAGACCCGCTGGACCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 90 bp | TGTGCACTCATACAATCCCTGAAGGCCTGCACTTGCGGCTGGCACTaGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTGCACTGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: CALIQSLKACTCGWH*RQSWCWAMHSCTAK Trigger: CTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | CTTAGGGTTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGCGCCAGTCCTGGTGTaGGGCCATGCACTCTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: LRVSSSQVSLGADFVRPTAPVLV*GHALLH Trigger: GTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGC...AGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | TTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTGAGTTGGGCCATGCACTCTaGCACTGCAAAGTGGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: FLLPRSLWVLISSGPLCELGHAL*HCKVGG Trigger: GCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAA...CTCACACAGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | CCGACCCATTACACTGAAGAAGTGAGGAAAGATAGAGGCACTTATGTCACTGCGGCGCCAGTCCTGGTGTaGGGCCATGCACTCTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: PTHYTEEVRKDRGTYVTAAPVLV*GHALLH Trigger: GTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGC...CGCAGTGACATAAGTGCCTCTATCTTTCCTCACTTCTTCAGTGTAATGGGTCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS-3UTR CAA 90 bp | CTTAGGGTTTCTTCTTCCCAGGTCTCTCTGGGTGCTGATTTCGTCAGGCCCACTGTGTTGAGCACTGGCTaGCTCTTTCCTCCTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LRVSSSQVSLGADFVRPTVLSTG*LFPPLQ Trigger: CTGCAGAGGAGGAAAGAGCAAGCCAGTGCTCAACAC...AGTGGGCCTGACGAAATCAGCACCCAGAGAGACCTGGGAAGAAGAAACCCTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | CCCGTATGTACTTATAAAGTACTTGGCACACAGTCACTGAGAGGTAGGGTGGAGTTGGGCCATGCACTCTaGCACTGCAAAGTGGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: PVCTYKVLGTQSLRGRVELGHAL*HCKVGG Trigger: GCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAA...CTCCACCCTACCTCTCAGTGACTGTGTGCCAAGTACTTTATAAGTACATACGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | CCCGTATGTACTTATAAAGTACTTGGCACACAGTCACTGAGAGGTAGGGTGGAGGTGTTGAGCACTGGCTaGCTCTTTCCTCCTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: PVCTYKVLGTQSLRGRVEVLSTG*LFPPLQ Trigger: CTGCAGAGGAGGAAAGAGCAAGCCAGTGCTCAACAC...CTCCACCCTACCTCTCAGTGACTGTGTGCCAAGTACTTTATAAGTACATACGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS-3UTR CAA 90 bp | CACTGTCAGTACTGCCAAACTAGCTCTGTGTTGATAGTGGCTCCATTTTCTAAAGCTCCTCCCTCCGTCTaGCCTGCTGTGCACTCATAC | + |
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Preference number: 5 (lower is better) Translates to: HCQYCQTSSVLIVAPFSKAPPSV*PAVHSY Trigger: GTATGAGTGCACAGCAGGCAAGACGGAGGGAGGAGC...TTTAGAAAATGGAGCCACTATCAACACAGAGCTAGTTTGGCAGTACTGACAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054310.4 |
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| CDS GCA 72 bp | GCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATaGACTCTTGCACTGCAAAGTGGGAGGCTGCACAGC | + |
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Preference number: 6 (lower is better) Translates to: AAGTGASPGVGP*TLALQSGRLHS Trigger: GCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 72 bp | CACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTaGACTGCAAAGTGGGAGGCTGCACAGCCAGACCGG | + |
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Preference number: 6 (lower is better) Translates to: HWRQSWCWAMHS*TAKWEAAQPDR Trigger: CCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CAA 72 bp | GCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTaGCACTGCAAAGTGGGAGGCTGCACAGCCAGACCG | + |
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Preference number: 6 (lower is better) Translates to: ALAPVLVLGHAL*HCKVGGCTARP Trigger: CGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CAA 90 bp | TTGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTCTaGCACTGCAAAGTGGGAGGCTGCACAGCCAGACCGGGTGATGAG | + |
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Preference number: 6 (lower is better) Translates to: LRLALAPVLVLGHAL*HCKVGGCTARPGDE Trigger: CTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CAA 90 bp | CCGTCTTGCCTGCTGTGCACTCATACAATCCCTGAAGGCCTGCACTaGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCACTC | + |
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Preference number: 6 (lower is better) Translates to: PSCLLCTHTIPEGLH*RLALAPVLVLGHAL Trigger: GAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGCAAGACGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 72 bp | TTGGGCCATGCACTCTTGCACTGCAAAGTGGGAGGCTaGACAGCCAGACCGGGTGATGAGCTGGTCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: LGHALLHCKVGG*TARPGDELVQR Trigger: CCGCTGGACCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 72 bp | GCGCCAGTCCTGGTGTTGGGCCATGCACTCTTGCACTaGAAAGTGGGAGGCTGCACAGCCAGACCGGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: APVLVLGHALLH*KVGGCTARPGD Trigger: ATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | TGCACTTGCGGCTGGCACTGGCGCCAGTCCTGGTGTTaGGCCATGCACTCTTGCACTGCAAAGTGGGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: CTCGWHWRQSWC*AMHSCTAKWEA Trigger: AGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | AAGGCCTGCACTTGCGGCTGGCACTGGCGCCAGTCCTaGTGTTGGGCCATGCACTCTTGCACTGCAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: KACTCGWHWRQS*CWAMHSCTAKW Trigger: CCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | GCACTCATACAATCCCTGAAGGCCTGCACTTGCGGCTaGCACTGGCGCCAGTCCTGGTGTTGGGCCATGCAC | + |
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Preference number: 6 (lower is better) Translates to: ALIQSLKACTCG*HWRQSWCWAMH Trigger: GTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CAA 72 bp | CTGCTGTGCACTCATACAATCCCTGAAGGCCTGCACTaGCGGCTGGCACTGGCGCCAGTCCTGGTGTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LLCTHTIPEGLH*RLALAPVLVLG Trigger: GCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS GCA 72 bp | CTTGCCTGCTGTGCACTCATACAATCCCTGAAGGCCTaGACTTGCGGCTGGCACTGGCGCCAGTCCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LACCALIQSLKA*TCGWHWRQSWC Trigger: ACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTATGAGTGCACAGCAGGCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | TCCTGGTGTTGGGCCATGCACTCTTGCACTGCAAAGTaGGAGGCTGCACAGCCAGACCGGGTGATGAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SWCWAMHSCTAK*EAAQPDRVMSW Trigger: CCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTTTGCAGTGCAAGAGTGCATGGCCCAACACCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | ATACAATCCCTGAAGGCCTGCACTTGCGGCTGGCACTaGCGCCAGTCCTGGTGTTGGGCCATGCACTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: IQSLKACTCGWH*RQSWCWAMHSC Trigger: GCAAGAGTGCATGGCCCAACACCAGGACTGGCGCCAGTGCCAGCCGCAAGTGCAGGCCTTCAGGGATTGTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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| CDS CCA 72 bp | AAGTGGGAGGCTGCACAGCCAGACCGGGTGATGAGCTaGTCCAGCGGGTCTTCCTCATCATCATCCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: KWEAAQPDRVMS*SSGSSSSSSFF Trigger: GAAGAAGGATGATGATGAGGAAGACCCGCTGGACCAGCTCATCACCCGGTCTGGCTGTGCAGCCTCCCACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054310.4 ENSMUST00000120454.3 |
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