Pregenerated sensors for COA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017188Ensembl transcript IDs: ENSMUST00000017332.4, ENSMUST00000168089.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGCTTCTTGGGCTCAATCACACAGTCCGACGTTAGTGTGCCAGTaGTGCTGTAAGACCACCAGGCATCATTCAACATATACAGGGGAT | + |
|
Preference number: 1 (lower is better) Translates to: LASWAQSHSPTLVCQ*CCKTTRHHSTYTGD Trigger: ATCCCCTGTATATGTTGAATGATGCCTGGTGGTCTTACAGCATCACTGGCACACTAACGTCGGACTGTGTGATTGAGCCCAAGAAGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| 3UTR-3UTR TCA 90 bp | GGAGGTGAAGGGGTAAACCACAAAGTTTGGGTAAAGGCAAGGTTGCATACCTCTGGAAATAAAAAGGGCTaGGTAACTGGACAAACTGCA | + |
|
Preference number: 2 (lower is better) Translates to: GGEGVNHKVWVKARLHTSGNKKG*VTGQTA Trigger: TGCAGTTTGTCCAGTTACTCAGCCCTTTTTATTTCC...AGAGGTATGCAACCTTGCCTTTACCCAAACTTTGTGGTTTACCCCTTCACCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| 3UTR-3UTR CAA 90 bp | GGAGGTGAAGGGGTAAACCACAAAGTTTGGGTAAAGGCAAGGTTGCATACCTCTATAGTCTCTGGCTTCTaGGGCTCAATCACACAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: GGEGVNHKVWVKARLHTSIVSGF*GSITQS Trigger: GGACTGTGTGATTGAGCCCAAGAAGCCAGAGACTAT...AGAGGTATGCAACCTTGCCTTTACCCAAACTTTGTGGTTTACCCCTTCACCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| CDS-3UTR CCA 90 bp | GAAGGGGTAAACCACAAAGTTTGGGTAAAGGCAAGGTTGCATACCTCTCAAACACCGGGTCCGCCGCTGTaGCAGTGTTTTCTGCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: EGVNHKVWVKARLHTSQTPGPPL*QCFLPL Trigger: CAGTGGCAGAAAACACTGCCACAGCGGCGGACCCGG...TGTTTGAGAGGTATGCAACCTTGCCTTTACCCAAACTTTGTGGTTTACCCCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| CDS-3UTR CCA 90 bp | AGACCACCAGGCATCATTCAACATATACAGGGGATCCAGCAGTTTGAAGATGGTAGTGTTTTCTGCCACTaGGCAAGTTGCACCTGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: RPPGIIQHIQGIQQFEDGSVFCH*ASCTCR Trigger: GCGGCAGGTGCAACTTGCCCAGTGGCAGAAAACACT...ACCATCTTCAAACTGCTGGATCCCCTGTATATGTTGAATGATGCCTGGTGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| CDS-3UTR GCA 90 bp | CAGGCATCATTCAACATATACAGGGGATCCAGCAGTTTGAAGATGGTCCATACATGTGGCAGTGTTTTCTaGCACTGGGCAAGTTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: QASFNIYRGSSSLKMVHTCGSVF*HWASCT Trigger: GGTGCAACTTGCCCAGTGGCAGAAAACACTGCCACA...TGTATGGACCATCTTCAAACTGCTGGATCCCCTGTATATGTTGAATGATGCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| CDS CCA 90 bp | GTCATGATGTTCCGGGTCCGCCGCTGTGGCAGTGTTTTCTGCCACTaGGCAAGTTGCACCTGCCGCATAAACTGCAACTGCGCTGGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: VMMFRVRRCGSVFCH*ASCTCRINCNCAGV Trigger: GACCCCAGCGCAGTTGCAGTTTATGCGGCAGGTGCAACTTGCCCAGTGGCAGAAAACACTGCCACAGCGGCGGACCCGGAACATCATGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017332.4 ENSMUST00000168089.2 |
||
| CDS CCA 90 bp | CGCTGGGGTCAATTTCTCCCGCGACGGGTCGATGCGCTGAGCGAATaGAGCATTTCCATTCTTAGCATTCAGAGGGTCACCAGCTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: RWGQFLPRRVDALSE*SISILSIQRVTSSR Trigger: CCTGGAGCTGGTGACCCTCTGAATGCTAAGAATGGAAATGCTCCATTCGCTCAGCGCATCGACCCGTCGCGGGAGAAATTGACCCCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017332.4 ENSMUST00000168089.2 |
||
| CDS TCA 90 bp | TGCAACTGCGCTGGGGTCAATTTCTCCCGCGACGGGTCGATGCGCTaGGCGAATGGAGCATTTCCATTCTTAGCATTCAGAGGGTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: CNCAGVNFSRDGSMR*ANGAFPFLAFRGSP Trigger: TGGTGACCCTCTGAATGCTAAGAATGGAAATGCTCCATTCGCTCAGCGCATCGACCCGTCGCGGGAGAAATTGACCCCAGCGCAGTTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017332.4 ENSMUST00000168089.2 |
||
| CDS-3UTR CAA 90 bp | GAAGGGGTAAACCACAAAGTTTGGGTAAAGGCAAGGTTGCATACCTCTCAAACAATCAAGGAAACGCTCTaGGGCCACCGAGTAGAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: EGVNHKVWVKARLHTSQTIKETL*GHRVEG Trigger: ACCTTCTACTCGGTGGCCCAAGAGCGTTTCCTTGAT...TGTTTGAGAGGTATGCAACCTTGCCTTTACCCAAACTTTGTGGTTTACCCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017332.4 |
||
| CDS TCA 72 bp | GCTGGGGTCAATTTCTCCCGCGACGGGTCGATGCGCTaGGCGAATGGAGCATTTCCATTCTTAGCATTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: AGVNFSRDGSMR*ANGAFPFLAFR Trigger: TCTGAATGCTAAGAATGGAAATGCTCCATTCGCTCAGCGCATCGACCCGTCGCGGGAGAAATTGACCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017332.4 ENSMUST00000168089.2 |
||
| CDS CCA 72 bp | CAATTTCTCCCGCGACGGGTCGATGCGCTGAGCGAATaGAGCATTTCCATTCTTAGCATTCAGAGGGTCACC | + |
|
Preference number: 6 (lower is better) Translates to: QFLPRRVDALSE*SISILSIQRVT Trigger: GGTGACCCTCTGAATGCTAAGAATGGAAATGCTCCATTCGCTCAGCGCATCGACCCGTCGCGGGAGAAATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017332.4 ENSMUST00000168089.2 |
||