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Pregenerated sensors for CNTNAP5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070695

Ensembl transcript IDs: ENSMUST00000043725.9

Found 301 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGAAAGTGTGTCACATACTCTCCCGTGAAATCTTCTCATCTAGATaGAACTCCTCCGGTCCACACAACAGCCAGTCCCTTGCCTCTTGG +
Preference number: 1 (lower is better)
Translates to: WKVCHILSREIFSSR*NSSGPHNSQSLASW
Trigger: CCAAGAGGCAAGGGACTGGCTGTTGTGTGGACCGGAGGAGTTGCATCTAGATGAGAAGATTTCACGGGAGAGTATGTGACACACTTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 90 bp TCATGGTGGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTTCCTTaGTCCTTGCAAACTCTTTTCCTCCTTGGCAAGAACCCCGTAAAG +
Preference number: 1 (lower is better)
Translates to: SWWKLWLSSASAAVP*SLQTLFLLGKNPVK
Trigger: CTTTACGGGGTTCTTGCCAAGGAGGAAAAGAGTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp TTAGGAGCCAGGGAAATATGGAGAAGAACCATCGTTACTTCATGGTaGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCC +
Preference number: 1 (lower is better)
Translates to: LGAREIWRRTIVTSW*KLWLSSASAAVPCS
Trigger: GGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTGGCTCCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp GAGTTAGGAGCCAGGGAAATATGGAGAAGAACCATCGTTACTTCATaGTGGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGC +
Preference number: 1 (lower is better)
Translates to: ELGAREIWRRTIVTS*WKLWLSSASAAVPC
Trigger: GCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTGGCTCCTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp AACCTCCCTCCTCTCTCACAGGGTAGAAACAAATGTTGCTTTCCCTaGGTAGATTCAGTTTCCTTCATTCCCTCCTGCTCTATTAGGTTC +
Preference number: 1 (lower is better)
Translates to: NLPPLSQGRNKCCFP*VDSVSFIPSCSIRF
Trigger: GAACCTAATAGAGCAGGAGGGAATGAAGGAAACTGAATCTACCCAGGGAAAGCAACATTTGTTTCTACCCTGTGAGAGAGGAGGGAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp AGGGAAATATGGAGAAGAACCATCGTTACTTCATGGTGGAAGCTTTaGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCCTTGCAAACT +
Preference number: 1 (lower is better)
Translates to: REIWRRTIVTSWWKL*LSSASAAVPCSLQT
Trigger: AGTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp GACAAATGCATGAAGGAGACTCCTGAGTTAGGAGCCAGGGAAATATaGAGAAGAACCATCGTTACTTCATGGTGGAAGCTTTGGCTCTCT +
Preference number: 1 (lower is better)
Translates to: DKCMKETPELGAREI*RRTIVTSWWKLWLS
Trigger: AGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTGGCTCCTAACTCAGGAGTCTCCTTCATGCATTTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp ACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTaGCTTGGGTTACTCCAGCAGGTTGTTCTTATAACCTTGGCCCTC +
Preference number: 1 (lower is better)
Translates to: THQMSLKLAGQKGLP*LGLLQQVVLITLAL
Trigger: GAGGGCCAAGGTTATAAGAACAACCTGCTGGAGTAACCCAAGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp GCAAAGAAGCTCCTCCGTATTCAGTCACTCTATATTGGAAAGTACTaGGACTCTATGGAAAGGATGATGAACGGAGTCAGGGGCTACTTG +
Preference number: 1 (lower is better)
Translates to: AKKLLRIQSLYIGKY*DSMERMMNGVRGYL
Trigger: CAAGTAGCCCCTGACTCCGTTCATCATCCTTTCCATAGAGTCTCAGTACTTTCCAATATAGAGTGACTGAATACGGAGGAGCTTCTTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp CATGCAGCACCTTTGTGTACATGGGTGCAGGTACAGAGTGGAAAATaGAAAGTGTGTCACATACTCTCCCGTGAAATCTTCTCATCTAGA +
Preference number: 1 (lower is better)
Translates to: HAAPLCTWVQVQSGK*KVCHILSREIFSSR
Trigger: TCTAGATGAGAAGATTTCACGGGAGAGTATGTGACACACTTTCCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGGTGCTGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp TTATTTAGGCACATAAGTCAAGTGCATGCAGCACCTTTGTGTACATaGGTGCAGGTACAGAGTGGAAAATGGAAAGTGTGTCACATACTC +
Preference number: 1 (lower is better)
Translates to: LFRHISQVHAAPLCT*VQVQSGKWKVCHIL
Trigger: GAGTATGTGACACACTTTCCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGGTGCTGCATGCACTTGACTTATGTGCCTAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp ATCAACTGTGAAGTACCTGCTTTGCAAATCAGGACTGCCTTGCAATaGGAATTGGCCAGCACTTTGCATATCAAAGATCTTTCTTCTAGC +
Preference number: 1 (lower is better)
Translates to: INCEVPALQIRTALQ*ELASTLHIKDLSSS
Trigger: GCTAGAAGAAAGATCTTTGATATGCAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCTGATTTGCAAAGCAGGTACTTCACAGTTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 90 bp CAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAGTaGCTGAGAATCTATAGAGTGAAGTTTTCAACTGGATTACAAACA +
Preference number: 1 (lower is better)
Translates to: QTPQSSSLREGAKIK*LRIYRVKFSTGLQT
Trigger: TGTTTGTAATCCAGTTGAAAACTTCACTCTATAGATTCTCAGGCACTTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp GAGTGTGGATTACTAGATTTTCACCTGGTGTGTGTTGTGAGGTTATaGGGAAATTCTGATTTAGCCCCGAGACTACTTACAAGAGTATAC +
Preference number: 1 (lower is better)
Translates to: ECGLLDFHLVCVVRL*GNSDLAPRLLTRVY
Trigger: GTATACTCTTGTAAGTAGTCTCGGGGCTAAATCAGAATTTCCTCATAACCTCACAACACACACCAGGTGAAAATCTAGTAATCCACACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp AGACTCAAAGGAAGACTTCTCACAGAGTGTCAGGTGGTTGCCTTCTaGAGTACACATTGTAGAGGATGGAAAGTGATCTACTATTCTATT +
Preference number: 1 (lower is better)
Translates to: RLKGRLLTECQVVAF*STHCRGWKVIYYSI
Trigger: AATAGAATAGTAGATCACTTTCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAAGTCTTCCTTTGAGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp ACTAGATTTTCACCTGGTGTGTGTTGTGAGGTTATGAGGAAATTCTaGTTTAGCCCCGAGACTACTTACAAGAGTATACCAACTCATCAT +
Preference number: 1 (lower is better)
Translates to: TRFSPGVCCEVMRKF*FSPETTYKSIPTHH
Trigger: ATGATGAGTTGGTATACTCTTGTAAGTAGTCTCGGGGCTAAATCAGAATTTCCTCATAACCTCACAACACACACCAGGTGAAAATCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp CTCTCCATAGAAAGTAGGTATGGATATAGATTCCTGGATAACATTTaGGGAACAGCCTTGTCAATTCTCTCTCTCTCTCTCTCTCTCTAT +
Preference number: 1 (lower is better)
Translates to: LSIESRYGYRFLDNI*GTALSILSLSLSLY
Trigger: ATAGAGAGAGAGAGAGAGAGAGAGAATTGACAAGGCTGTTCCTCAAATGTTATCCAGGAATCTATATCCATACCTACTTTCTATGGAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp TCTCTCAACTCAGTTCTCAAGGAACACAATTTTCCCACCTCTTTATaGAGCCAGATATGTCTCCAAATATTTCAGTCCAAAATGGAGAAA +
Preference number: 1 (lower is better)
Translates to: SLNSVLKEHNFPTSL*SQICLQIFQSKMEK
Trigger: TTTCTCCATTTTGGACTGAAATATTTGGAGACATATCTGGCTCCATAAAGAGGTGGGAAAATTGTGTTCCTTGAGAACTGAGTTGAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp ACCTTGGCAAAGTCAGGTATTTTTCTCTTAATTTTAAGGCCAGTCTaGTTTATAATGGAGTCAAGCATCCAGGGTTACCTAGTAAATCCT +
Preference number: 1 (lower is better)
Translates to: TLAKSGIFLLILRPV*FIMESSIQGYLVNP
Trigger: AGGATTTACTAGGTAACCCTGGATGCTTGACTCCATTATAAATCAGACTGGCCTTAAAATTAAGAGAAAAATACCTGACTTTGCCAAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 90 bp ATTAGAATGTGTTATCTGTCTTCACTTCCTTATGTTCTACTTTCCTaGCTTATGTTCTGGCAGTGGGAAGTGTACATTAAAGAGATTGAA +
Preference number: 1 (lower is better)
Translates to: IRMCYLSSLPYVLLS*LMFWQWEVYIKEIE
Trigger: TTCAATCTCTTTAATGTACACTTCCCACTGCCAGAACATAAGGCAGGAAAGTAGAACATAAGGAAGTGAAGACAGATAACACATTCTAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 90 bp GATCATAGTTTATTTTACTTAAAGCTGACATTAGAGTGCTCATACTaGGCAGATAAAATCACTGTGGTGATAATTCTGAAACATCCCTGG +
Preference number: 1 (lower is better)
Translates to: DHSLFYLKLTLECSY*ADKITVVIILKHPW
Trigger: CCAGGGATGTTTCAGAATTATCACCACAGTGATTTTATCTGCTCAGTATGAGCACTCTAATGTCAGCTTTAAGTAAAATAAACTATGATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 90 bp CTCTCTCTCTATCTATCTATCTATCTATCTATCTCTCCTTTTAGATaGGACAACTATTTTGAATTTGGGAACACAGATGAGAAAGAACAG +
Preference number: 1 (lower is better)
Translates to: LSLYLSIYLSISPFR*DNYFEFGNTDEKEQ
Trigger: CTGTTCTTTCTCATCTGTGTTCCCAAATTCAAAATAGTTGTCCCATCTAAAAGGAGAGATAGATAGATAGATAGATAGATAGAGAGAGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp TGGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCCTaGCAAACTCTTTTCCTCCTTGGCAAGAACCCCGTAAAGCTACTC +
Preference number: 2 (lower is better)
Translates to: WKLWLSSASAAVPCS*QTLFLLGKNPVKLL
Trigger: GAGTAGCTTTACGGGGTTCTTGCCAAGGAGGAAAAGAGTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp TTCATGGTGGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTTCCTaGCTCCTTGCAAACTCTTTTCCTCCTTGGCAAGAACCCCGTAAA +
Preference number: 2 (lower is better)
Translates to: FMVEALALFSISSCS*LLANSFPPWQEPRK
Trigger: TTTACGGGGTTCTTGCCAAGGAGGAAAAGAGTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAGGGTCTCCCTTGACTTaGGTTACTCCAGCAGGTTGT +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGGSPLT*VTPAGC
Trigger: ACAACCTGCTGGAGTAACCCAAGTCAAGGGAGACCC...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp CAGGGAAATATGGAGAAGAACCATCGTTACTTCATGGTGGAAGCTTaGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCCTTGCAAAC +
Preference number: 2 (lower is better)
Translates to: QGNMEKNHRYFMVEA*ALFSISSCSLLLAN
Trigger: GTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAAAGTCTAAGGGAAGGTaGCAAGATCAAGTGCCTGAG +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGKSKGR*QDQVPE
Trigger: CTCAGGCACTTGATCTTGGCACCTTCCCTTAGACTT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATCAGCAGCTGTTCCTTaGTCCTTGCAAACTCTTTTC +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGSAAVP*SLQTLF
Trigger: GAAAAGAGTTTGCAAGGAGCAAGGAACAGCTGCTGA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAGGTGCAGGTACAGAGTaGAAAATGGAAAGTGTGTCA +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGGAGTE*KMESVS
Trigger: TGACACACTTTCCATTTTCCACTCTGTACCTGCACC...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCAGGACTGCCTTGCAATaGGAATTGGCCAGCACTTTG +
Preference number: 2 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLRTALQ*ELASTL
Trigger: CAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCT...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAGCAGAGAGCAGAAACTaGCTTCATGCATTTCCCTAT +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGAESRN*LHAFPY
Trigger: ATAGGGAAATGCATGAAGCCAGTTTCTGCTCTCTGC...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp TACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTaGACTTGGGTTACTCCAGCAGGTTGTTCTTATAACCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: YSSNVIKISRPEGSP*TWVTPAGCSYNLGP
Trigger: AGGGCCAAGGTTATAAGAACAACCTGCTGGAGTAACCCAAGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAATTAGAGAAGACAGGTaGCAAGTTAGAGGAGCAGCT +
Preference number: 2 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQIREDR*QVRGAA
Trigger: AGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAAT...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAGGGAAATATCTCGGTTaGGGTAAGAACTCATTACCT +
Preference number: 2 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQGKYLG*GKNSLP
Trigger: AGGTAATGAGTTCTTACCTCAACCGAGATATTTCCC...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTTTCCCACCTCTTTATaGAGCCAGATATGTCTCCAA +
Preference number: 2 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSFPTSL*SQICLQ
Trigger: TTGGAGACATATCTGGCTCCATAAAGAGGTGGGAAA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGCAGTCCCTTGCCTCTTaGGAAATATCTCGGTTGAGG +
Preference number: 2 (lower is better)
Translates to: KHLIHMLRALFCITYTSRQSLAS*EISRLR
Trigger: CCTCAACCGAGATATTTCCCAAGAGGCAAGGGACTG...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGCACCTTTGTGTACATaGGTGCAGGTACAGAGTGGA +
Preference number: 2 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFAPLCT*VQVQSG
Trigger: TCCACTCTGTACCTGCACCCATGTACACAAAGGTGC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAACTACAGATGGGCAACTaGATGATGGTAGTGAGGACT +
Preference number: 2 (lower is better)
Translates to: KTFPICERDRKQQSAILQLQMGN*MMVVRT
Trigger: AGTCCTCACTACCATCATCCAGTTGCCCATCTGTAG...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATGTGAGTCTTCTAATTaGGATGTGATCATATGGCAA +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGCESSN*DVIIWQ
Trigger: TTGCCATATGATCACATCTCAATTAGAAGACTCACA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAACATTTCCAATCTGTaGGAGAGACAGGAAACAGCA +
Preference number: 2 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFNISNL*ERQETA
Trigger: TGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATACAAACATAGAATGTaGATGTGTGCACATGTGTCT +
Preference number: 2 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGYKHRM*MCAHVS
Trigger: AGACACATGTGCACACATGCACATTCTATGTTTGTA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGTGAAGTACCTGCTTTaGAAATCAGGACTGCCTTGC +
Preference number: 2 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFVKYLL*KSGLPC
Trigger: GCAAGGCAGTCCTGATTTGCAAAGCAGGTACTTCAC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp TTTACTACTTTATTTAGGCACATAAGTCAAGTGCATGCAGCACCTTaGTGTACATGGGTGCAGGTACAGAGTGGAAAATGGAAAGTGTGT +
Preference number: 2 (lower is better)
Translates to: FTTLFRHISQVHAAP*CTWVQVQSGKWKVC
Trigger: ACACACTTTCCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGGTGCTGCATGCACTTGACTTATGTGCCTAAATAAAGTAGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTTGGTCATTTTCACAATaGGACATATGTCAGTGGGTT +
Preference number: 2 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFWSFSQ*DICQWV
Trigger: AACCCACTGACATATGTCTCATTGTGAAAATGACCA...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTTCTCACAGATATTATaGAGGACTACCTTCCTATGT +
Preference number: 2 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSFSQIL*RTTFLC
Trigger: ACATAGGAAGGTAGTCCTTCATAATATCTGTGAGAA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTATATTGGAAAGTACTaGGACTCTATGGAAAGGATG +
Preference number: 2 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSYIGKY*DSMERM
Trigger: CATCCTTTCCATAGAGTCTCAGTACTTTCCAATATA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 90 bp TTTCCTGCCTTATGTTCTGGCAGTGGGAAGTGTACATTAAAGAGATaGAATATAGGCTTTTGGGAAGTCTTCTATTGTCAAGTTTGGGGA +
Preference number: 2 (lower is better)
Translates to: FPALCSGSGKCTLKR*NIGFWEVFYCQVWG
Trigger: TCCCCAAACTTGACAATAGAAGACTTCCCAAAAGCCTATATTCAATCTCTTTAATGTACACTTCCCACTGCCAGAACATAAGGCAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAAAGAACCCAAAGCCTaGGATGCTTTACTACTTTAT +
Preference number: 2 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFKEPKA*DALLLY
Trigger: ATAAAGTAGTAAAGCATCTCAGGCTTTGGGTTCTTT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGGTGCCAAGATCAAGTaGCTGAGAATCTATAGAGTG +
Preference number: 2 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHGAKIK*LRIYRV
Trigger: CACTCTATAGATTCTCAGGCACTTGATCTTGGCACC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAAAATGTTGCTTTCCCTaGGTAGATTCAGTTTCCTTC +
Preference number: 2 (lower is better)
Translates to: KTFPICERDRKQQSAILQKCCFP*VDSVSF
Trigger: GAAGGAAACTGAATCTACCCAGGGAAAGCAACATTT...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAATCAGTCACTCTATATTaGAAAGTACTGAGACTCTAT +
Preference number: 2 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQSVTLY*KVLRLY
Trigger: ATAGAGTCTCAGTACTTTCCAATATAGAGTGACTGA...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCAATATTTCAAGGTTGTaGTGTGTTCTACACTCCATC +
Preference number: 2 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLNISRL*CVLHSI
Trigger: GATGGAGTGTAGAACACACCACAACCTTGAAATATT...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCATAAGTCAAGTGCATaGAGCACCTTTGTGTACATG +
Preference number: 2 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHHKSSA*STFVYM
Trigger: CATGTACACAAAGGTGCTGCATGCACTTGACTTATG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR GCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGGTAGAAACAAATGTTaGTTTCCCTGGGTAGATTCA +
Preference number: 2 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHGRNKC*FPWVDS
Trigger: TGAATCTACCCAGGGAAAGCAACATTTGTTTCTACC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAACTAACAATATTGTATTaGGCAGGAACAGTTGTTACA +
Preference number: 2 (lower is better)
Translates to: KTFPICERDRKQQSAILQLTILY*AGTVVT
Trigger: TGTAACAACTGTTCCTGCCCAATACAATATTGTTAG...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR TCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGCATTCCCTAAGGATTaGAGTGTTTGCATGGTTTAT +
Preference number: 2 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQAFPKD*SVCMVY
Trigger: ATAAACCATGCAAACACTTCAATCCTTAGGGAATGC...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGCAAGCTCAATTAAAATaGCCTAAGCCTTTTCATGAA +
Preference number: 2 (lower is better)
Translates to: KHLIHMLRALFCITYTSRQAQLK*PKPFHE
Trigger: TTCATGAAAAGGCTTAGGCCATTTTAATTGAGCTTG...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGACATTCATCCTTTACTaGACCTTTATTGATTGGATG +
Preference number: 2 (lower is better)
Translates to: KHLIHMLRALFCITYTSRTFILY*TFIDWM
Trigger: CATCCAATCAATAAAGGTCCAGTAAAGGATGAATGT...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGATTGAAGTGTTTGCATaGTTTATCCCTTGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQIEVFA*FIPCLF
Trigger: GAAAAGACAAGGGATAAACCATGCAAACACTTCAAT...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp ATGCAACTCCTCCGGTCCACACAACAGCCAGTCCCTTaGCTCTTGGGAAATATCTCGGTTGAGGTAAGAACT +
Preference number: 3 (lower is better)
Translates to: MQLLRSTQQPVP*LLGNISVEVRT
Trigger: AGTTCTTACCTCAACCGAGATATTTCCCAAGAGGCAAGGGACTGGCTGTTGTGTGGACCGGAGGAGTTGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp TGGAGAAGAACCATCGTTACTTCATGGTGGAAGCTTTaGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCC +
Preference number: 3 (lower is better)
Translates to: WRRTIVTSWWKL*LSSASAAVPCS
Trigger: GGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAAGGGTCTCCCTTGACTaGGGTTACTCCAGCAGGTTG +
Preference number: 3 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQRVSLD*GYSSRL
Trigger: CAACCTGCTGGAGTAACCCAAGTCAAGGGAGACCCT...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp GCCAGGGAAATATGGAGAAGAACCATCGTTACTTCATaGTGGAAGCTTTGGCTCTCTTCAGCATCAGCAGCT +
Preference number: 3 (lower is better)
Translates to: AREIWRRTIVTS*WKLWLSSASAA
Trigger: AGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAGCTGTTCCTTGCTCCTaGCAAACTCTTTTCCTCCTT +
Preference number: 3 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGAVPCS*QTLFLL
Trigger: AAGGAGGAAAAGAGTTTGCAAGGAGCAAGGAACAGC...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp GCTCCTAGCTGTGATGGCATTCAGTGTAGGAGAGTGTaGATTACTAGATTTTCACCTGGTGTGTGTTGTGAG +
Preference number: 3 (lower is better)
Translates to: APSCDGIQCRRV*ITRFSPGVCCE
Trigger: CTCACAACACACACCAGGTGAAAATCTAGTAATCCACACTCTCCTACACTGAATGCCATCACAGCTAGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp GGAGACTCAAAGGAAGACTTCTCACAGAGTGTCAGGTaGTTGCCTTCTGAAGTACACATTGTAGAGGATGGA +
Preference number: 3 (lower is better)
Translates to: GDSKEDFSQSVR*LPSEVHIVEDG
Trigger: TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAAGTCTTCCTTTGAGTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp GGAAGACTTCTCACAGAGTGTCAGGTGGTTGCCTTCTaGAGTACACATTGTAGAGGATGGAAAGTGATCTAC +
Preference number: 3 (lower is better)
Translates to: GRLLTECQVVAF*STHCRGWKVIY
Trigger: GTAGATCACTTTCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAAGTCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp CTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTaGCCTCTACTCCCTGGTGCTGTGAGTAGACTTCTG +
Preference number: 3 (lower is better)
Translates to: LEMICKLSVHSP*PLLPGAVSRLL
Trigger: CAGAAGTCTACTCACAGCACCAGGGAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp CCTTTGTGTACATGGGTGCAGGTACAGAGTGGAAAATaGAAAGTGTGTCACATACTCTCCCGTGAAATCTTC +
Preference number: 3 (lower is better)
Translates to: PLCTWVQVQSGK*KVCHILSREIF
Trigger: GAAGATTTCACGGGAGAGTATGTGACACACTTTCCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp CACATAAGTCAAGTGCATGCAGCACCTTTGTGTACATaGGTGCAGGTACAGAGTGGAAAATGGAAAGTGTGT +
Preference number: 3 (lower is better)
Translates to: HISQVHAAPLCT*VQVQSGKWKVC
Trigger: ACACACTTTCCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGGTGCTGCATGCACTTGACTTATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp AGGGAAATATGGAGAAGAACCATCGTTACTTCATGGTaGAAGCTTTGGCTCTCTTCAGCATCAGCAGCTGTT +
Preference number: 3 (lower is better)
Translates to: REIWRRTIVTSW*KLWLSSASAAV
Trigger: AACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp ATGAAGGAGACTCCTGAGTTAGGAGCCAGGGAAATATaGAGAAGAACCATCGTTACTTCATGGTGGAAGCTT +
Preference number: 3 (lower is better)
Translates to: MKETPELGAREI*RRTIVTSWWKL
Trigger: AAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCATATTTCCCTGGCTCCTAACTCAGGAGTCTCCTTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCATTGGGCAGGAACAGTaGTTACAAGCAAACACCACA +
Preference number: 3 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSIGQEQ*LQANTT
Trigger: TGTGGTGTTTGCTTGTAACAACTGTTCCTGCCCAAT...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp ATGGGCAACTGGATGATGGTAGTGAGGACTTTGCTATaGACCTCCTTATCCATGGCAGTGATGAAAAGTAAG +
Preference number: 3 (lower is better)
Translates to: MGNWMMVVRTLL*TSLSMAVMKSK
Trigger: CTTACTTTTCATCACTGCCATGGATAAGGAGGTTCATAGCAAAGTCCTCACTACCATCATCCAGTTGCCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp TCAGGACTGCCTTGCAATGGGAATTGGCCAGCACTTTaGATATCAAAGATCTTTCTTCTAGCATTCCCTAAG +
Preference number: 3 (lower is better)
Translates to: SGLPCNGNWPAL*ISKIFLLAFPK
Trigger: CTTAGGGAATGCTAGAAGAAAGATCTTTGATATGCAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp AAGAAGTATCACCTATCAACTGTGAAGTACCTGCTTTaGAAATCAGGACTGCCTTGCAATGGGAATTGGCCA +
Preference number: 3 (lower is better)
Translates to: KKYHLSTVKYLL*KSGLPCNGNWP
Trigger: TGGCCAATTCCCATTGCAAGGCAGTCCTGATTTGCAAAGCAGGTACTTCACAGTTGATAGGTGATACTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp GAAGTACCTGCTTTGCAAATCAGGACTGCCTTGCAATaGGAATTGGCCAGCACTTTGCATATCAAAGATCTT +
Preference number: 3 (lower is better)
Translates to: EVPALQIRTALQ*ELASTLHIKDL
Trigger: AAGATCTTTGATATGCAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCTGATTTGCAAAGCAGGTACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCCAGTCCCTTGCCTCTaGGGAAATATCTCGGTTGAG +
Preference number: 3 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHPVPCL*GNISVE
Trigger: CTCAACCGAGATATTTCCCAAGAGGCAAGGGACTGG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGACTAGTTCTCAGACACTaGTCTAAACAGACTCAAATG +
Preference number: 3 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGLVLRH*SKQTQM
Trigger: CATTTGAGTCTGTTTAGACAAGTGTCTGAGAACTAG...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp TCACCTGGTGTGTGTTGTGAGGTTATGAGGAAATTCTaGTTTAGCCCCGAGACTACTTACAAGAGTATACCA +
Preference number: 3 (lower is better)
Translates to: SPGVCCEVMRKF*FSPETTYKSIP
Trigger: TGGTATACTCTTGTAAGTAGTCTCGGGGCTAAATCAGAATTTCCTCATAACCTCACAACACACACCAGGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp CTGCTTTGCAAATCAGGACTGCCTTGCAATGGGAATTaGCCAGCACTTTGCATATCAAAGATCTTTCTTCTA +
Preference number: 3 (lower is better)
Translates to: LLCKSGLPCNGN*PALCISKIFLL
Trigger: TAGAAGAAAGATCTTTGATATGCAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCTGATTTGCAAAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp CCTAATTTGAATCTGCTATCAGATGCAGGCTTTACTTaGGTACTGAGGAGACTCAAAGGAAGACTTCTCACA +
Preference number: 3 (lower is better)
Translates to: PNLNLLSDAGFT*VLRRLKGRLLT
Trigger: TGTGAGAAGTCTTCCTTTGAGTCTCCTCAGTACCCAAGTAAAGCCTGCATCTGATAGCAGATTCAAATTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCCCCACCATCCACAAATaGAAGATGCCTCTTCAAATG +
Preference number: 3 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFPTIHK*KMPLQM
Trigger: CATTTGAAGAGGCATCTTCAATTTGTGGATGGTGGG...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGACAATATTTCAAGGTaGTGGTGTGTTCTACACTCC +
Preference number: 3 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFDNISR*WCVLHS
Trigger: GGAGTGTAGAACACACCACAACCTTGAAATATTGTC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp TTACTAGATTTTCACCTGGTGTGTGTTGTGAGGTTATaGGGAAATTCTGATTTAGCCCCGAGACTACTTACA +
Preference number: 3 (lower is better)
Translates to: LLDFHLVCVVRL*GNSDLAPRLLT
Trigger: TGTAAGTAGTCTCGGGGCTAAATCAGAATTTCCTCATAACCTCACAACACACACCAGGTGAAAATCTAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp GAAAGTAGGTATGGATATAGATTCCTGGATAACATTTaGGGAACAGCCTTGTCAATTCTCTCTCTCTCTCTC +
Preference number: 3 (lower is better)
Translates to: ESRYGYRFLDNI*GTALSILSLSL
Trigger: GAGAGAGAGAGAGAGAATTGACAAGGCTGTTCCTCAAATGTTATCCAGGAATCTATATCCATACCTACTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp AGCAAAGAAGCTCCTCCGTATTCAGTCACTCTATATTaGAAAGTACTGAGACTCTATGGAAAGGATGATGAA +
Preference number: 3 (lower is better)
Translates to: SKEAPPYSVTLY*KVLRLYGKDDE
Trigger: TTCATCATCCTTTCCATAGAGTCTCAGTACTTTCCAATATAGAGTGACTGAATACGGAGGAGCTTCTTTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR-3UTR CAA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGAATTGGCCAGCACTTaGCATATCAAAGATCTTTCT +
Preference number: 3 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFELAST*HIKDLS
Trigger: AGAAAGATCTTTGATATGCAAAGTGCTGGCCAATTC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp TGTTATCTGTCTTCACTTCCTTATGTTCTACTTTCCTaGCTTATGTTCTGGCAGTGGGAAGTGTACATTAAA +
Preference number: 3 (lower is better)
Translates to: CYLSSLPYVLLS*LMFWQWEVYIK
Trigger: TTTAATGTACACTTCCCACTGCCAGAACATAAGGCAGGAAAGTAGAACATAAGGAAGTGAAGACAGATAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp ATTATAGACTGCTCTTTTCTGTCTATAGTCTATACATaGGTCTGCCACATGCAGAAGCATATACTTGGAAAG +
Preference number: 3 (lower is better)
Translates to: IIDCSFLSIVYT*VCHMQKHILGK
Trigger: CTTTCCAAGTATATGCTTCTGCATGTGGCAGACCCATGTATAGACTATAGACAGAAAAGAGCAGTCTATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp CCTTATGTTCTACTTTCCTGCCTTATGTTCTGGCAGTaGGAAGTGTACATTAAAGAGATTGAATATAGGCTT +
Preference number: 3 (lower is better)
Translates to: PYVLLSCLMFWQ*EVYIKEIEYRL
Trigger: AAGCCTATATTCAATCTCTTTAATGTACACTTCCCACTGCCAGAACATAAGGCAGGAAAGTAGAACATAAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp AACATATTACATGGTCTACAAAACAGACTTGCAATGTaGCAACATCAGATGGGACTGAGGATTTTGTTACAG +
Preference number: 3 (lower is better)
Translates to: NILHGLQNRLAM*QHQMGLRILLQ
Trigger: CTGTAACAAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCATGTAATATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CCA 72 bp TCACTTCCTTATGTTCTACTTTCCTGCCTTATGTTCTaGCAGTGGGAAGTGTACATTAAAGAGATTGAATAT +
Preference number: 3 (lower is better)
Translates to: SLPYVLLSCLMF*QWEVYIKEIEY
Trigger: ATATTCAATCTCTTTAATGTACACTTCCCACTGCCAGAACATAAGGCAGGAAAGTAGAACATAAGGAAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR GCA 72 bp ATATGGTTTGTTTCCAAAAGAACCCAAAGCCTGAGATaGTTTACTACTTTATTTAGGCACATAAGTCAAGTG +
Preference number: 3 (lower is better)
Translates to: IWFVSKRTQSLR*FTTLFRHISQV
Trigger: CACTTGACTTATGTGCCTAAATAAAGTAGTAAAGCATCTCAGGCTTTGGGTTCTTTTGGAAACAAACCATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR TCA 72 bp ATATCAAAGATCTTTCTTCTAGCATTCCCTAAGGATTaGAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTT +
Preference number: 3 (lower is better)
Translates to: ISKIFLLAFPKD*SVCMVYPLSFL
Trigger: AAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCTTAGGGAATGCTAGAAGAAAGATCTTTGATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCGAAGGCTACCCAGGATaGCCAAGGGCACAGTGCTGC +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSEGYPG*PRAQCC
Trigger: GCAGCACTGTGCCCTTGGTCATCCTGGGTAGCCTTC...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp CTCCTCCGGTCCACACAACAGCCAGTCCCTTGCCTCTaGGGAAATATCTCGGTTGAGGTAAGAACTCATTAC +
Preference number: 4 (lower is better)
Translates to: LLRSTQQPVPCL*GNISVEVRTHY
Trigger: GTAATGAGTTCTTACCTCAACCGAGATATTTCCCAAGAGGCAAGGGACTGGCTGTTGTGTGGACCGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp TGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTCCTaGCAAACTCTTTTCCTCCTTGGCAAGAACCCCGTA +
Preference number: 4 (lower is better)
Translates to: WLSSASAAVPCS*QTLFLLGKNPV
Trigger: TACGGGGTTCTTGCCAAGGAGGAAAAGAGTTTGCAAGGAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTCCCAATCCACCAGGTaGATGGGGCTCCATCTGGTG +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSSQSTR*MGLHLV
Trigger: CACCAGATGGAGCCCCATTCACCTGGTGGATTGGGA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCGAAATGGCCTCCCTCTaGGGCCTCCCTCATACTCTG +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSEMASL*GLPHTL
Trigger: CAGAGTATGAGGGAGGCCTCAGAGGGAGGCCATTTC...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAGGGCACAGTGCTGCTaGGCCGAGCTTTGCTGTCAT +
Preference number: 4 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFRAQCC*AELCCH
Trigger: ATGACAGCAAAGCTCGGCTCAGCAGCACTGTGCCCT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCGGAAGGTTGTCCACCTaGAGTGAGGTCTCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSGRLST*SEVSLR
Trigger: CCTCAAGGAGACCTCACTTCAGGTGGACAACCTTCC...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCGTCCACAGTGAAGTTTaGCTGCTTGCCCACACGCTC +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSVHSEV*LLAHTL
Trigger: GAGCGTGTGGGCAAGCAGGCAAACTTCACTGTGGAC...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAATATTCGGGAGGTGTCTaGAGCTGGGGAAGCAGCATC +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQYSGGV*SWGSSI
Trigger: GATGCTGCTTCCCCAGCTCCAGACACCTCCCGAATA...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTCCACATCCACACTGCTaGACTCCCGGAACAGCACCT +
Preference number: 4 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTPHPHC*TPGTAP
Trigger: AGGTGCTGTTCCGGGAGTCCAGCAGTGTGGATGTGG...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp ATGGAGAAGAACCATCGTTACTTCATGGTGGAAGCTTaGGCTCTCTTCAGCATCAGCAGCTGTTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: MEKNHRYFMVEA*ALFSISSCSLL
Trigger: GAGCAAGGAACAGCTGCTGATGCTGAAGAGAGCCAAAGCTTCCACCATGAAGTAACGATGGTTCTTCTCCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAACGGCTAATCTTCACCTaGTGCACTCTTCTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQRLIFT*CTLLLA
Trigger: GGCCAACAGAAGAGTGCATCAGGTGAAGATTAGCCG...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAAAGAACCCAGCTGTGTaGCCTCTGTGTCTATACACC +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGKNPAV*PLCLYT
Trigger: GGTGTATAGACACAGAGGGCACACAGCTGGGTTCTT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAGTCCCAGTGGCCCACTaGCATCAGAGTCAACATAGA +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQVPVAH*HQSQHR
Trigger: TCTATGTTGACTCTGATGGCAGTGGGCCACTGGGAC...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAATGCACGGTGGTCACTaGATTCACATCAGAGTCCAC +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGMHGGH*IHIRVH
Trigger: GTGGACTCTGATGTGAATGCAGTGACCACCGTGCAT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAGACAGACCATCAATTTaGGGGGTTCCAGGCAGCATC +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQDRPSI*GVPGSI
Trigger: GATGCTGCCTGGAACCCCCCAAATTGATGGTCTGTC...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAGCGCTGAATTCCGTATaGAAGGTGGGAAAGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQALNSV*KVGKWR
Trigger: CCTCCACTTTCCCACCTTCCATACGGAATTCAGCGC...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAGGAGAAAGCCTTCAGTaGGAGGAAGTTGGACAATGG +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQGESLQ*EEVGQW
Trigger: CCATTGTCCAACTTCCTCTCACTGAAGGCTTTCTCC...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCTTGGTCCGGAAGTGCTaGGTGTTCATGTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLLVRKC*VFMSTV
Trigger: CACTGTGGACATGAACACTCAGCACTTCCGGACCAA...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAAAGAAATGTCAGCGCTaGATTCCGTATGGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGKKCQR*IPYGRW
Trigger: CCACCTTCCATACGGAATTCAGCGCTGACATTTCTT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTTTGGGCATTGGAATCTaGTGGGGACCAACCACCAGT +
Preference number: 4 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTLGIGI*WGPTTS
Trigger: ACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAA...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGGCATGGCGGAGGGCTaGCTTCAATGGTGCTATGTG +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFGMAEG*LQWCYV
Trigger: CACATAGCACCATTGAAGGCAGCCCTCCGCCATGCC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCATCTGGAGCCACTGTTaGGCATTGGAATCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLIWSHC*ALESAG
Trigger: CCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGAT...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAAATCTGTGTCACCCTTaGTCCGGAAGTGCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQNLCHP*SGSAEC
Trigger: ACACTCAGCACTTCCGGACCAAGGGTGACACAGATT...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCAGGGATTCTCAGGACTaGAACCCTGTACCCGAGTCA +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLRDSQD*NPVPES
Trigger: TGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCT...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCCGTTGTCCTTCTCCATaGAACAGAACTCCATCTCCT +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSRCPSP*NRTPSP
Trigger: AGGAGATGGAGTTCTGTTTCATGGAGAAGGACAACG...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCATATTGCAGTACACCTaGAGGGGTCCCAGTGGCCCA +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFILQYT*RGPSGP
Trigger: TGGGCCACTGGGACCCCTTCAGGTGTACTGCAATAT...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTGTTGTCCACCTGAAGTaGGGTCTCCTTGAGGTTTGT +
Preference number: 4 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFVVHLK*GLLEVC
Trigger: ACAAACCTCAAGGAGACCTCACTTCAGGTGGACAAC...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAGCTGTTAATCCTAAATaGCACAAGCCTGAGAGCACC +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQAVNPK*HKPEST
Trigger: GGTGCTCTCAGGCTTGTGGCATTTAGGATTAACAGC...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCGTTTCTCCACACACTTaGCCCCATTGTGGCAATTGC +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLVSPHT*PHCGNC
Trigger: GCAATTGCCACAATGGGGGCAAGTGTGTGGAGAAAC...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAACGGGATCTCCTACAGTaGTATATCACCTCCTGTTCA +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQRDLLQ*YITSCS
Trigger: TGAACAGGAGGTGATATACCACTGTAGGAGATCCCG...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCAAGGGTGCCTTTCAGTaGACCTCCCAATCCACCAGG +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFKGAFQ*TSQSTR
Trigger: CCTGGTGGATTGGGAGGTCCACTGAAAGGCACCCTT...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGGGTGCAATACTGGCATaGCGGAGGGCTGCCTTCAAT +
Preference number: 4 (lower is better)
Translates to: KHLIHMLRALFCITYTSRGAILA*RRAAFN
Trigger: ATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACC...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp GACTCAAAGGAAGACTTCTCACAGAGTGTCAGGTGGTaGCCTTCTGAAGTACACATTGTAGAGGATGGAAAG +
Preference number: 4 (lower is better)
Translates to: DSKEDFSQSVRW*PSEVHIVEDGK
Trigger: CTTTCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAAGTCTTCCTTTGAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCCAGATGCTGTCTTCTTaGTTGTATGGTTGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSQMLSS*LYGCQL
Trigger: CAACTGGCAACCATACAATCAAGAAGACAGCATCTG...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGTCTGGAGTTCCAGAGTaGTGTGGTCTCCACGTTGTC +
Preference number: 4 (lower is better)
Translates to: KHLIHMLRALFCITYTSRSGVPE*CGLHVV
Trigger: GACAACGTGGAGACCACATCACTCTGGAACTCCAGA...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAAGTTGTTGGTCCATCTaGATGGAAAGTTCTGGACCA +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQSCWSI*MESSGP
Trigger: TGGTCCAGAACTTTCCATTCAGATGGACCAACAACT...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAAGGCCTCCACTCTCATaGCAATCTTTCCATTCGGGT +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQRPPLS*QSFHSG
Trigger: ACCCGAATGGAAAGATTGGCATGAGAGTGGAGGCCT...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAAAGAACTCCATCTCCTTaGATGCTCTTGAACTTCAGG +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQRTPSP*MLLNFR
Trigger: CCTGAAGTTCAAGAGCATGCAAGGAGATGGAGTTCT...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTAATTGCTTCCATAGCTaGTGCAGTGACCTGGACAAC +
Preference number: 4 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTNCFHS*CSDLDN
Trigger: GTTGTCCAGGTCACTGCAGCAGCTATGGAAGCAATT...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAACCCCATTGTGGCAATTaGTTCCATAGCTGCTGCAGT +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQPHCGN*FHSCCS
Trigger: ACTGCAGCAGCTATGGAAGCAATTGCCACAATGGGG...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCTTGGACAGTCACAGGTaGAATACTGGCATGGCGGAG +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFLDSHR*NTGMAE
Trigger: CTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAA...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGGCATTGGAATCTGCTaGGGACCAACCACCAGTTCC +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHGIGIC*GPTTSS
Trigger: GGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGCCACTGTTGGGCATTaGAATCTGCTGGGGACCAAC +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHATVGH*NLLGTN
Trigger: GTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAGCCTCATGCAGCCTTaGAAAGCCTTAATGGGGTTT +
Preference number: 4 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFSLMQP*KALMGF
Trigger: AAACCCCATTAAGGCTTTCCAAGGCTGCATGAGGCT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAAATCCACCAGGTGAATaGGGCTCCATCTGGTGTGTT +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQNPPGE*GSIWCV
Trigger: AACACACCAGATGGAGCCCCATTCACCTGGTGGATT...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATCTGTCAAGGTCTTTTaGACAGTCACAGGTGCAATA +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGSVKVF*TVTGAI
Trigger: TATTGCACCTGTGACTGTCCAAAAGACCTTGACAGA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp TTATTTAGGCACATAAGTCAAGTGCATGCAGCACCTTaGTGTACATGGGTGCAGGTACAGAGTGGAAAATGG +
Preference number: 4 (lower is better)
Translates to: LFRHISQVHAAP*CTWVQVQSGKW
Trigger: CCATTTTCCACTCTGTACCTGCACCCATGTACACAAAGGTGCTGCATGCACTTGACTTATGTGCCTAAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp CCTGCTTTGCAAATCAGGACTGCCTTGCAATGGGAATaGGCCAGCACTTTGCATATCAAAGATCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: PALQIRTALQWE*ASTLHIKDLSS
Trigger: AGAAGAAAGATCTTTGATATGCAAAGTGCTGGCCAATTCCCATTGCAAGGCAGTCCTGATTTGCAAAGCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAGAACTGGAAACTCACTaGCAGACCATCAATTTGGGG +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQELETH*QTINLG
Trigger: CCCCAAATTGATGGTCTGTCAGTGAGTTTCCAGTTC...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAATCTGTGTAGATAGCTaGAGAGGAAAGGCTTGTGTT +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQICVDS*RGKACV
Trigger: AACACAAGCCTTTCCTCTTCAGCTATCTACACAGAT...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAGTGATTGTATTGGACTaGAGAAAGGCATCCAACAAA +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGVIVLD*RKASNK
Trigger: TTTGTTGGATGCCTTTCTTCAGTCCAATACAATCAC...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCTATGGTTGCCAGTTGTaGCCTGTGTCACTAAACATC +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLYGCQL*PVSLNI
Trigger: GATGTTTAGTGACACAGGGCACAACTGGCAACCATA...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCTGTCCCAGGTTTGCTTaGTACTGGAATTCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLCPRFA*YWNSSK
Trigger: TTTGGAGGAATTCCAGTACCAAGCAAACCTGGGACA...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGGAGGTGTCTGGAGCTaGGGAAGCAGCATCATTATC +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHGGVWS*GSSIII
Trigger: GATAATGATGCTGCTTCCCCAGCTCCAGACACCTCC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAAATGGGGTTTAAGCATTaGGAATCGGTGAGATTGTCA +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQMGFKH*ESVRLS
Trigger: TGACAATCTCACCGATTCCCAATGCTTAAACCCCAT...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAATTCCGTATGGAAGGTaGGAAAGTGGAGGTAAGACG +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQIPYGR*ESGGKT
Trigger: CGTCTTACCTCCACTTTCCCACCTTCCATACGGAAT...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAAAAGGCTTGTGTTCTTaGTCACTGGATATGGTTCTT +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGKGLCS*SLDMVL
Trigger: AAGAACCATATCCAGTGACCAAGAACACAAGCCTTT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTCGCTCGAGCAACTTCTaGATCCAAATCAAGAGTTTC +
Preference number: 4 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTRSSNF*IQIKSF
Trigger: GAAACTCTTGATTTGGATCCAGAAGTTGCTCGAGCG...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATTTTGGAGTGGTTCATaGTCATCTGTCTTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGFWSGS*SSVFPK
Trigger: CTTTGGAAAGACAGATGACCATGAACCACTCCAAAA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAATTGTCCAAGTTCTCTaGGTATTCCTTCTTCATCTG +
Preference number: 4 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGIVQVL*VFLLHL
Trigger: CAGATGAAGAAGGAATACCCAGAGAACTTGGACAAT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAACCAGTTCAGTTGAGCTaGACTAGAACTTCCAGTGAT +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQPVQLS*TRTSSD
Trigger: ATCACTGGAAGTTCTAGTTCAGCTCAACTGAACTGG...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCCAGGCAAGTGATCTTTaGAGGAAAACAAGCCAGTAT +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLQASDL*RKTSQY
Trigger: ATACTGGCTTGTTTTCCTTCAAAGATCACTTGCCTG...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGAAGTGAGGTCTCCTTaGGGTTTGTCTCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQEVRSP*GLSQLG
Trigger: TCCGAGCTGAGACAAACCTCAAGGAGACCTCACTTC...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGTGGAGTCATGGCAGGTaGCTCCAGTGTAACCAGTAC +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQWSHGR*LQCNQY
Trigger: GTACTGGTTACACTGGAGCCACCTGCCATGACTCCA...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCGACTGCATTTTGGAGTaGTTCATGGTCATCTGTCTT +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLDCILE*FMVICL
Trigger: AAGACAGATGACCATGAACCACTCCAAAATGCAGTC...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAATCATTGTCTTCTGATTaGACCTGTATAAAAGTGAGC +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQSLSSD*TCIKVS
Trigger: GCTCACTTTTATACAGGTTCAATCAGAAGACAATGA...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAACTACAAATGTCCAGATaGTGTCTTCTTGATTGTATG +
Preference number: 4 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQLQMSR*CLLDCM
Trigger: CATACAATCAAGAAGACAGCATCTGGACATTTGTAG...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAAAAATGTCCCAGGTTTaGTTGGTACTGGAATTCCTC +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQKMSQV*LVLEFL
Trigger: GAGGAATTCCAGTACCAAGCAAACCTGGGACATTTT...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGAATCTGACAAAGAATaGACGGTGGTCACTGCATTC +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFESDKE*TVVTAF
Trigger: GAATGCAGTGACCACCGTGCATTCTTTGTCAGATTC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAGAGGAAGTTGGACAATaGGTCATCACAGTTGTAGTT +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQEEVGQ*VITVVV
Trigger: AACTACAACTGTGATGACCCATTGTCCAACTTCCTC...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGTCTTCTTGATTGTATaGTTGCCAGTTGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFVFLIV*LPVVPC
Trigger: ACAGGGCACAACTGGCAACCATACAATCAAGAAGAC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAATGTGTTCTTGGTCACTaGATATGGTTCTTGAAACAT +
Preference number: 4 (lower is better)
Translates to: LLQANTTELKSKGRCQDQCVLGH*IWFLKH
Trigger: ATGTTTCAAGAACCATATCCAGTGACCAAGAACACA...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGACAAAGAATGCACGGTaGTCACTGCATTCACATCAG +
Preference number: 4 (lower is better)
Translates to: KHLIHMLRALFCITYTSRTKNAR*SLHSHQ
Trigger: CTGATGTGAATGCAGTGACCACCGTGCATTCTTTGT...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCTGAGCAGGAAAAAGTaGCATTGCCTGAGTAGATCT +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHLSRKK*HCLSRS
Trigger: AGATCTACTCAGGCAATGTCACTTTTTCCTGCTCAG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAACAATTTGTGGTTCTaGGCAGGAAAAAGTGACATT +
Preference number: 4 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFNNLWF*AGKSDI
Trigger: AATGTCACTTTTTCCTGCTCAGAACCACAAATTGTT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCCTGTTCACAGTATTCTaGGCCATCAATCAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFLFTVF*AINQSF
Trigger: GAAGCTTTGATTGATGGCTCAGAATACTGTGAACAG...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCTTCAATGGTGCTATGTaGTTGTATTGGACTGAAGAA +
Preference number: 4 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLFNGAM*LYWTEE
Trigger: TTCTTCAGTCCAATACAATCACATAGCACCATTGAA...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGTATTCCTTCTTCATCTaGTTGGTGCGGTGTGACTGC +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQYSFFI*LVRCDC
Trigger: GCAGTCACACCGCACCAATCAGATGAAGAAGGAATA...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAACTGAAATTTCTTTCCTaGAGAAAGGTCCTTCATACG +
Preference number: 4 (lower is better)
Translates to: KTFPICERDRKQQSAILQLKFLS*RKVLHT
Trigger: CGTATGAAGGACCTTTCTGCAGGAAAGAAATTTCAG...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGTTTTGCAGGTCAATCTaGAGCCACTGTTGGGCATTG +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQFCRSI*SHCWAL
Trigger: CAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAA...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATTTCCATGTTCGGAACTaGAAACTCACTGACAGACCA +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHFHVRN*KLTDRP
Trigger: TGGTCTGTCAGTGAGTTTCCAGTTCCGAACATGGAA...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR TCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAATCAAGAGTTTCTGTaGCTTTGCCTAGGACAAGTG +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHNQEFL*LCLGQV
Trigger: CACTTGTCCTAGGCAAAGTCACAGAAACTCTTGATT...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGCAAGCCAGTATCATTTaGCCATTCATCTATATCTGC +
Preference number: 4 (lower is better)
Translates to: KHLIHMLRALFCITYTSRQASII*PFIYIC
Trigger: GCAGATATAGATGAATGGGCAAATGATACTGGCTTG...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTGCCTTCAATGGTaGTATGTGATTGTATTGGAC +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQGCLQW*YVIVLD
Trigger: GTCCAATACAATCACATAGCACCATTGAAGGCAGCC...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCTGAATGGAAAGTTCTaGACCATCTCGGCTAATCTT +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHLNGKF*TISANL
Trigger: AAGATTAGCCGAGATGGTCCAGAACTTTCCATTCAG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCTCGTTTGCATTCAGTaGCTGTGTTTTGCAAGTCAA +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHLVCIQ*LCFASQ
Trigger: TTGACTTGCAAAACACAGCCACTGAATGCAAACGAG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGTGTATGTTACAGATGTaGCAGAATCAAAAAGAGCTG +
Preference number: 4 (lower is better)
Translates to: KHLIHMLRALFCITYTSRCMLQM*QNQKEL
Trigger: CAGCTCTTTTTGATTCTGGCACATCTGTAACATACA...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp TACATATTAGTGGATGAAGAAATTGTACACTCTGCGTaGGCTTGTAACTCCATTTCTGTCCATCAATATCGT +
Preference number: 4 (lower is better)
Translates to: YILVDEEIVHSA*ACNSISVHQYR
Trigger: ACGATATTGATGGACAGAAATGGAGTTACAAGCCAACGCAGAGTGTACAATTTCTTCATCCACTAATATGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp CTTACAAGAGTATACCAACTCATCATTTATCAAACACCTTATCCATATGCTCAGTTCAGTTCCATGTCTTaGCACTTTCTTAATCAGGAG +
Preference number: 4 (lower is better)
Translates to: LTRVYQLIIYQTPYPYAQFSSMS*HFLNQE
Trigger: CTCCTGATTAAGAAAGTGGCAAGACATGGAACTGAA...CTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTGGTATACTCTTGTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR GCA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCCCATTCATCTATATCTaGATCACAATTGCAAAAGTG +
Preference number: 4 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFPFIYI*ITIAKV
Trigger: CACTTTTGCAATTGTGATGCAGATATAGATGAATGG...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CCA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATCTTGGTCACTGGATATaGTTCTTGAAACATGTATGT +
Preference number: 4 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHLGHWI*FLKHVC
Trigger: ACATACATGTTTCAAGAACCATATCCAGTGACCAAG...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp AAACAAGGAGTCTCCAGTGAATCCCAATGGTCTGTTTaGCCTCTGCTGTGCTTTAATAATAATAATAACAAT +
Preference number: 4 (lower is better)
Translates to: KQGVSSESQWSV*PLLCFNNNNNN
Trigger: ATTGTTATTATTATTATTAAAGCACAGCAGAGGCAAAACAGACCATTGGGATTCACTGGAGACTCCTTGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp TCTATACATGGGTCTGCCACATGCAGAAGCATATACTaGGAAAGCTTTAATAAGAACATAGAAAATTTAGCA +
Preference number: 4 (lower is better)
Translates to: SIHGSATCRSIY*ESFNKNIENLA
Trigger: TGCTAAATTTTCTATGTTCTTATTAAAGCTTTCCAAGTATATGCTTCTGCATGTGGCAGACCCATGTATAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
3UTR CAA 72 bp ATCTATCTATCTCTCCTTTTAGATGGGACAACTATTTaGAATTTGGGAACACAGATGAGAAAGAACAGCAAT +
Preference number: 4 (lower is better)
Translates to: IYLSLLLDGTTI*NLGTQMRKNSN
Trigger: ATTGCTGTTCTTTCTCATCTGTGTTCCCAAATTCAAAATAGTTGTCCCATCTAAAAGGAGAGATAGATAGAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp CCAGTAAGGGTGCCTTTCAGTGGACCTCCCAATCCACCAGGTGAATaGGGCTCCATCTGGTGTGTTAAGCAGACGGGATCTCCTACAGTG +
Preference number: 5 (lower is better)
Translates to: PVRVPFSGPPNPPGE*GSIWCVKQTGSPTV
Trigger: CACTGTAGGAGATCCCGTCTGCTTAACACACCAGATGGAGCCCCATTCACCTGGTGGATTGGGAGGTCCACTGAAAGGCACCCTTACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp TCAGAGTCCACCATGGAGCCACAGCTGGATTCTGTCAAGGTCTTTTaGACAGTCACAGGTGCAATACTGGCATGGCGGAGGGCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: SESTMEPQLDSVKVF*TVTGAILAWRRAAF
Trigger: GAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCTGTGGCTCCATGGTGGACTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp GGAGCCACAGCTGGATTCTGTCAAGGTCTTTTGGACAGTCACAGGTaGAATACTGGCATGGCGGAGGGCTGCCTTCAATGGTGCTATGTG +
Preference number: 5 (lower is better)
Translates to: GATAGFCQGLLDSHR*NTGMAEGCLQWCYV
Trigger: CACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCTGTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp CCTTTCAGTGGACCTCCCAATCCACCAGGTGAATGGGGCTCCATCTaGTGTGTTAAGCAGACGGGATCTCCTACAGTGGTATATCACCTC +
Preference number: 5 (lower is better)
Translates to: PFSGPPNPPGEWGSI*CVKQTGSPTVVYHL
Trigger: GAGGTGATATACCACTGTAGGAGATCCCGTCTGCTTAACACACCAGATGGAGCCCCATTCACCTGGTGGATTGGGAGGTCCACTGAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp TCTCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTTGGGCATTaGAATCTGCTGGGGACCAACCACCAGTTCCCATTCTCCAGTTCA +
Preference number: 5 (lower is better)
Translates to: SPLCFAGQSGATVGH*NLLGTNHQFPFSSS
Trigger: TGAACTGGAGAATGGGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp GCTGTAATCTCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTTaGGCATTGGAATCTGCTGGGGACCAACCACCAGTTCCCATTCTC +
Preference number: 5 (lower is better)
Translates to: AVISTLFCRSIWSHC*ALESAGDQPPVPIL
Trigger: GAGAATGGGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGATTACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp TGTGTGGCTACAGCTGTAATCTCCACTCTGTTTTGCAGGTCAATCTaGAGCCACTGTTGGGCATTGGAATCTGCTGGGGACCAACCACCA +
Preference number: 5 (lower is better)
Translates to: CVATAVISTLFCRSI*SHCWALESAGDQPP
Trigger: TGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGATTACAGCTGTAGCCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp TCAAAGCTTCCAGCTGCTCCATACTGCCACCATAGTTTAAGGTCATaGAGTAGGGATTCTCAGGACTGGAACCCTGTACCCGAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: SKLPAAPYCHHSLRS*SRDSQDWNPVPESA
Trigger: AGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGACCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp ATGGCGGAGGGCTGCCTTCAATGGTGCTATGTGATTGTATTGGACTaGAGAAAGGCATCCAACAAAACCCAAGGTGTTCGCTCGAGCAAC +
Preference number: 5 (lower is better)
Translates to: MAEGCLQWCYVIVLD*RKASNKTQGVRSSN
Trigger: GTTGCTCGAGCGAACACCTTGGGTTTTGTTGGATGCCTTTCTTCAGTCCAATACAATCACATAGCACCATTGAAGGCAGCCCTCCGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp GGTGCAATACTGGCATGGCGGAGGGCTGCCTTCAATGGTGCTATGTaGTTGTATTGGACTGAAGAAAGGCATCCAACAAAACCCAAGGTG +
Preference number: 5 (lower is better)
Translates to: GAILAWRRAAFNGAM*LYWTEERHPTKPKV
Trigger: CACCTTGGGTTTTGTTGGATGCCTTTCTTCAGTCCAATACAATCACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp CAGCTACATCTGATCTATAGGAGCATCCATAGGCCTCCACTCTCATaGCAATCTTTCCATTCGGGTTCCACTCTAGGGGCACAAAGCGAA +
Preference number: 5 (lower is better)
Translates to: QLHLIYRSIHRPPLS*QSFHSGSTLGAQSE
Trigger: TTCGCTTTGTGCCCCTAGAGTGGAACCCGAATGGAAAGATTGGCATGAGAGTGGAGGCCTATGGATGCTCCTATAGATCAGATGTAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp TACTGCCACCATAGTTTAAGGTCATGGAGTAGGGATTCTCAGGACTaGAACCCTGTACCCGAGTCAGCTCTGTGTTGTTGTGCTGAACTG +
Preference number: 5 (lower is better)
Translates to: YCHHSLRSWSRDSQD*NPVPESALCCCAEL
Trigger: CAGTTCAGCACAACAACACAGAGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGACCTTAAACTATGGTGGCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp ACAAAGAATGCACGGTGGTCACTGCATTCACATCAGAGTCCACCATaGAGCCACAGCTGGATTCTGTCAAGGTCTTTTGGACAGTCACAG +
Preference number: 5 (lower is better)
Translates to: TKNARWSLHSHQSPP*SHSWILSRSFGQSQ
Trigger: CTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCTGTGGCTCCATGGTGGACTCTGATGTGAATGCAGTGACCACCGTGCATTCTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AGGATTGAAGTGTTTGCATGGTTTATCCCTTGTCTTTTCTTGGGGGTGGTCCAACTGCTGAGCCGAGCTTaGCTGTCATCCAGGTTCAGG +
Preference number: 5 (lower is better)
Translates to: RIEVFAWFIPCLFLGVVQLLSRA*LSSRFR
Trigger: CCTGAACCTGGATGACAGCAAAGCTCGGCTCAGCAG...TTGGACCACCCCCAAGAAAAGACAAGGGATAAACCATGCAAACACTTCAATCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp GTGACCTCAGTGTCCGGAACTCAACTTCTGGGGAGAAGCTATAGCTaGAGAGTTGTTGGTCCATCTGAATGGAAAGTTCTGGACCATCTC +
Preference number: 5 (lower is better)
Translates to: VTSVSGTQLLGRSYS*RVVGPSEWKVLDHL
Trigger: GAGATGGTCCAGAACTTTCCATTCAGATGGACCAACAACTCTTCAGCTATAGCTTCTCCCCAGAAGTTGAGTTCCGGACACTGAGGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp AGTTGGTACAGTCACAGGAATAACCAGTATGTTTCTCCACACACTTaGCCCCATTGTGGCAATTGCTTCCATAGCTGCTGCAGTGACCTG +
Preference number: 5 (lower is better)
Translates to: SWYSHRNNQYVSPHT*PHCGNCFHSCCSDL
Trigger: CAGGTCACTGCAGCAGCTATGGAAGCAATTGCCACAATGGGGGCAAGTGTGTGGAGAAACATACTGGTTATTCCTGTGACTGTACCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp AGCTGGATTCTGTCAAGGTCTTTTGGACAGTCACAGGTGCAATACTaGCATGGCGGAGGGCTGCCTTCAATGGTGCTATGTGATTGTATT +
Preference number: 5 (lower is better)
Translates to: SWILSRSFGQSQVQY*HGGGLPSMVLCDCI
Trigger: AATACAATCACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAAATCTGGAGCCACTGTaGGGCATTGGAATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGNLEPL*GIGICW
Trigger: CCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTGTGAAGTTTGCCTGCTaGCCCACACGCTCCAGGAGA +
Preference number: 5 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFVKFAC*PTRSRR
Trigger: TCTCCTGGAGCGTGTGGGCAAGCAGGCAAACTTCAC...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTGGGAATCGGTGAGATaGTCAGGGCACCCTCCAAAG +
Preference number: 5 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSWESVR*SGHPPK
Trigger: CTTTGGAGGGTGCCCTGACAATCTCACCGATTCCCA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp ACAAAGCGAACAAAGCGGGCTCTCACAGAGTGCAGCAGCTTGTGGTaGACCACACTGTCAGAATTCATGTTTCCTACAAATGTCCAGATG +
Preference number: 5 (lower is better)
Translates to: TKRTKRALTECSSLW*TTLSEFMFPTNVQM
Trigger: CATCTGGACATTTGTAGGAAACATGAATTCTGACAGTGTGGTTCACCACAAGCTGCTGCACTCTGTGAGAGCCCGCTTTGTTCGCTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp TCAGGACTGGAACCCTGTACCCGAGTCAGCTCTGTGTTGTTGTGCTaGACTGTCATCCATATCTTGTCCTCAGTAATATTGCAGTACACC +
Preference number: 5 (lower is better)
Translates to: SGLEPCTRVSSVLLC*TVIHILSSVILQYT
Trigger: GGTGTACTGCAATATTACTGAGGACAAGATATGGATGACAGTTCAGCACAACAACACAGAGCTGACTCGGGTACAGGGTTCCAGTCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp TTCTGTCTTGATGATGTTCCTCCTACAAACAACTGGCTATTCAACTaGAGTCGGAAATGGCCTCCCTCTGAGGCCTCCCTCATACTCTGT +
Preference number: 5 (lower is better)
Translates to: FCLDDVPPTNNWLFN*SRKWPPSEASLILC
Trigger: ACAGAGTATGAGGGAGGCCTCAGAGGGAGGCCATTTCCGACTTCAGTTGAATAGCCAGTTGTTTGTAGGAGGAACATCATCAAGACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp AGGTGTTCGCTCGAGCAACTTCTGGATCCAAATCAAGAGTTTCTGTaGCTTTGCCTAGGACAAGTGACCTCAGTGTCCGGAACTCAACTT +
Preference number: 5 (lower is better)
Translates to: RCSLEQLLDPNQEFL*LCLGQVTSVSGTQL
Trigger: AAGTTGAGTTCCGGACACTGAGGTCACTTGTCCTAGGCAAAGTCACAGAAACTCTTGATTTGGATCCAGAAGTTGCTCGAGCGAACACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp CACAGTATTCTGAGCCATCAATCAAAGCTTCCAGCTGCTCCATACTaGCACCATAGTTTAAGGTCATGGAGTAGGGATTCTCAGGACTGG +
Preference number: 5 (lower is better)
Translates to: HSILSHQSKLPAAPY*HHSLRSWSRDSQDW
Trigger: CCAGTCCTGAGAATCCCTACTCCATGACCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGATTGATGGCTCAGAATACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp GTCCAAGTTCTCTGGGTATTCCTTCTTCATCTGATTGGTGCGGTGTaGCTGCTTATGTTGATAGAGGAAGCGGGTCATGATTCCAATGAC +
Preference number: 5 (lower is better)
Translates to: VQVLWVFLLHLIGAV*LLMLIEEAGHDSND
Trigger: GTCATTGGAATCATGACCCGCTTCCTCTATCAACATAAGCAGTCACACCGCACCAATCAGATGAAGAAGGAATACCCAGAGAACTTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp ACAAGCCAGTATCATTTGCCCATTCATCTATATCTGCATCACAATTaGAAAAGTGTCGACTGTCCAGGCAGCTTTCCTCCAGGCCACATC +
Preference number: 5 (lower is better)
Translates to: TSQYHLPIHLYLHHN*KSVDCPGSFPPGHI
Trigger: GATGTGGCCTGGAGGAAAGCTGCCTGGACAGTCGACACTTTTGCAATTGTGATGCAGATATAGATGAATGGGCAAATGATACTGGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp AGGTCCTTGGGCTGGTTATCAATAAAGATGAGCCTCATGCAGCCTTaGAAAGCCTTAATGGGGTTTAAGCATTGGGAATCGGTGAGATTG +
Preference number: 5 (lower is better)
Translates to: RSLGWLSIKMSLMQP*KALMGFKHWESVRL
Trigger: CAATCTCACCGATTCCCAATGCTTAAACCCCATTAAGGCTTTCCAAGGCTGCATGAGGCTCATCTTTATTGATAACCAGCCCAAGGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp CCAATGACTGCTGAGTCACTTCGGACTGCATTTTGGAGTGGTTCATaGTCATCTGTCTTTCCAAAGGAATCTGACAAAGAATGCACGGTG +
Preference number: 5 (lower is better)
Translates to: PMTAESLRTAFWSGS*SSVFPKESDKECTV
Trigger: CACCGTGCATTCTTTGTCAGATTCCTTTGGAAAGACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp GCTATGACGCCTCCAATGACTGCTGAGTCACTTCGGACTGCATTTTaGAGTGGTTCATGGTCATCTGTCTTTCCAAAGGAATCTGACAAA +
Preference number: 5 (lower is better)
Translates to: AMTPPMTAESLRTAF*SGSWSSVFPKESDK
Trigger: TTTGTCAGATTCCTTTGGAAAGACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATTGGAGGCGTCATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGATTCAGTGAGAGGAAGTaGGACAATGGGTCATCACAG +
Preference number: 5 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGFSERK*DNGSSQ
Trigger: CTGTGATGACCCATTGTCCAACTTCCTCTCACTGAA...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TTCTCACAGAGTGTCAGGTGGTTGCCTTCTGAAGTACACATTGTAGAGGATGGAATGTCCCAGGTTTGCTaGGTACTGGAATTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: FSQSVRWLPSEVHIVEDGMSQVC*VLEFLQ
Trigger: TTGGAGGAATTCCAGTACCAAGCAAACCTGGGACAT...TCCATCCTCTACAATGTGTACTTCAGAAGGCAACCACCTGACACTCTGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp CCTGTCACCATAGCAACGCAAAGGCCCAATTCTCCAAGCAGCTTCTaGGTTTGTTCGGTTGGTATCCATGATAATTATCTGAGTTACAGG +
Preference number: 5 (lower is better)
Translates to: PVTIATQRPNSPSSF*VCSVGIHDNYLSYR
Trigger: CCTGTAACTCAGATAATTATCATGGATACCAACCGAACAAACTCAGAAGCTGCTTGGAGAATTGGGCCTTTGCGTTGCTATGGTGACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp GGTGAACCACACTGTCAGAATTCATGTTTCCTACAAATGTCCAGATaGTGTCTTCTTGATTGTATGGTTGCCAGTTGTGCCCTGTGTCAC +
Preference number: 5 (lower is better)
Translates to: GEPHCQNSCFLQMSR*CLLDCMVASCALCH
Trigger: GTGACACAGGGCACAACTGGCAACCATACAATCAAGAAGACAGCATCTGGACATTTGTAGGAAACATGAATTCTGACAGTGTGGTTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp AGTGTGAGAGTAACACGATTTCTTCTGGCATTGATGCTGACAGAATaGCACAGGCCATCATTTAAGCCACTGCCTGTGAGGATTTCAGTT +
Preference number: 5 (lower is better)
Translates to: SVRVTRFLLALMLTE*HRPSFKPLPVRISV
Trigger: AACTGAAATCCTCACAGGCAGTGGCTTAAATGATGGCCTGTGGCATTCTGTCAGCATCAATGCCAGAAGAAATCGTGTTACTCTCACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TTGTTACAAGCAAACACCACAGAGCTCAAGTCTAAGGGAAGGTGCCAAGATCAATCTCCTTGCATGCTCTaGAACTTCAGGGAGATCACA +
Preference number: 5 (lower is better)
Translates to: LLQANTTELKSKGRCQDQSPCML*NFREIT
Trigger: TGTGATCTCCCTGAAGTTCAAGAGCATGCAAGGAGA...TTGATCTTGGCACCTTCCCTTAGACTTGAGCTCTGTGGTGTTTGCTTGTAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp AAAAGTAATAAATGTCACCACTGCTATGACGCCTCCAATGACTGCTaGGTCACTTCGGACTGCATTTTGGAGTGGTTCATGGTCATCTGT +
Preference number: 5 (lower is better)
Translates to: KSNKCHHCYDASNDC*VTSDCILEWFMVIC
Trigger: ACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATTGGAGGCGTCATAGCAGTGGTGACATTTATTACTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp GTAACTCTTTCCAGAATAAATCTGTATTCGGGAGGTGTCTGGAGCTaGGGAAGCAGCATCATTATCCAGTGTGAGAGTAACACGATTTCT +
Preference number: 5 (lower is better)
Translates to: VTLSRINLYSGGVWS*GSSIIIQCESNTIS
Trigger: AGAAATCGTGTTACTCTCACACTGGATAATGATGCTGCTTCCCCAGCTCCAGACACCTCCCGAATACAGATTTATTCTGGAAAGAGTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 90 bp AAAGTAGTAACTCTTTCCAGAATAAATCTGTATTCGGGAGGTGTCTaGAGCTGGGGAAGCAGCATCATTATCCAGTGTGAGAGTAACACG +
Preference number: 5 (lower is better)
Translates to: KVVTLSRINLYSGGV*SWGSSIIIQCESNT
Trigger: CGTGTTACTCTCACACTGGATAATGATGCTGCTTCCCCAGCTCCAGACACCTCCCGAATACAGATTTATTCTGGAAAGAGTTACTACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTCAGAACTCCATCTCCTaGCATGCTCTTGAACTTCAG +
Preference number: 5 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTQNSIS*HALELQ
Trigger: CTGAAGTTCAAGAGCATGCAAGGAGATGGAGTTCTG...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAAGATGTGGTCTCCACGTaGTCCTTCTCCATGAAACAG +
Preference number: 5 (lower is better)
Translates to: KTFPICERDRKQQSAILQDVVST*SFSMKQ
Trigger: CTGTTTCATGGAGAAGGACAACGTGGAGACCACATC...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TACCTCTCACTGTTAGATGTTCTTAGGGCTAAACTTCAGCATGACTTTCATTTCGAGCCTCATGCAGCCTaGGAAAGCCTTAATGGGGTT +
Preference number: 5 (lower is better)
Translates to: YLSLLDVLRAKLQHDFHFEPHAA*ESLNGV
Trigger: AACCCCATTAAGGCTTTCCAAGGCTGCATGAGGCTC...GAAATGAAAGTCATGCTGAAGTTTAGCCCTAAGAACATCTAACAGTGAGAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAATGTTTCTCCACACACTaGCCCCCATTGTGGCAATTG +
Preference number: 5 (lower is better)
Translates to: KTFPICERDRKQQSAILQCFSTH*PPLWQL
Trigger: CAATTGCCACAATGGGGGCAAGTGTGTGGAGAAACA...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp CACAGATCAATGTGTAAATCACTAAAACTCCCCAGGGAACCTTGCTaGACTGAAATGAGGTCCTTGGGCTGGTTATCAATAAAGATGAGC +
Preference number: 5 (lower is better)
Translates to: HRSMCKSLKLPREPC*TEMRSLGWLSIKMS
Trigger: GCTCATCTTTATTGATAACCAGCCCAAGGACCTCATTTCAGTTCAGCAAGGTTCCCTGGGGAGTTTTAGTGATTTACACATTGATCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTCCAGATGCTGTCTTCTaGATTGTATGGTTGCCAGTT +
Preference number: 5 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTPDAVF*IVWLPV
Trigger: AACTGGCAACCATACAATCAAGAAGACAGCATCTGG...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp TGCACTCTTCTGTTGGCCAGATTCTCTGTGTCCATGTTGAATACATaGCTTTCATCCTTGCTTAGTCGATATCGAACCTGTAAACTTCCA +
Preference number: 5 (lower is better)
Translates to: CTLLLARFSVSMLNT*LSSLLSRYRTCKLP
Trigger: TGGAAGTTTACAGGTTCGATATCGACTAAGCAAGGATGAAAGTCATGTATTCAACATGGACACAGAGAATCTGGCCAACAGAAGAGTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 90 bp TCTCTTCCAGGTCTACTTTATGCCCATTCAAGAGTAAAGAACGGATaGATCCAAGAAAGCCTTTCTGTCTTGATGATGTTCCTCCTACAA +
Preference number: 5 (lower is better)
Translates to: SLPGLLYAHSRVKNG*IQESLSVLMMFLLQ
Trigger: TTGTAGGAGGAACATCATCAAGACAGAAAGGCTTTCTTGGATGCATCCGTTCTTTACTCTTGAATGGGCATAAAGTAGACCTGGAAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTAAAAATGTCCCAGGTTaGCTTGGTACTGGAATTCCT +
Preference number: 5 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFKNVPG*LGTGIP
Trigger: AGGAATTCCAGTACCAAGCAAACCTGGGACATTTTT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCACTGAAATGAGGTCCTaGGGCTGGTTATCAATAAAG +
Preference number: 5 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLTEMRS*GWLSIK
Trigger: CTTTATTGATAACCAGCCCAAGGACCTCATTTCAGT...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp ATTAAATTAGAGAAGACAGGTGGCAAGTTAGAGGAGCAGCTACTTCCTTGCAGCTCGGATGTAATGCCATaGATTGTCATTCAGAGGATA +
Preference number: 5 (lower is better)
Translates to: IKLEKTGGKLEEQLLPCSSDVMP*IVIQRI
Trigger: TATCCTCTGAATGACAATCAATGGCATTACATCCGA...GCTGCAAGGAAGTAGCTGCTCCTCTAACTTGCCACCTGTCTTCTCTAATTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 90 bp GCTGAAGAGGAAAGGCTTGTGTTCTTGGTCACTGGATATGGTTCTTaGAACATGTATGTTACAGATGTGCCAGAATCAAAAAGAGCTGAA +
Preference number: 5 (lower is better)
Translates to: AEEERLVFLVTGYGS*NMYVTDVPESKRAE
Trigger: TTCAGCTCTTTTTGATTCTGGCACATCTGTAACATACATGTTTCAAGAACCATATCCAGTGACCAAGAACACAAGCCTTTCCTCTTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGGGCAAACACCTGTCTTaGATGCTACACAGATCAATG +
Preference number: 5 (lower is better)
Translates to: KHLIHMLRALFCITYTSRGKHLS*MLHRSM
Trigger: CATTGATCTGTGTAGCATCAAAGACAGGTGTTTGCC...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp TGGTCTACAAAACAGACTTGCAATGTGGCAACATCAGATGGGACTGAGGATTTTACTGTCATCCATATCTaGTCCTCAGTAATATTGCAG +
Preference number: 5 (lower is better)
Translates to: WSTKQTCNVATSDGTEDFTVIHI*SSVILQ
Trigger: CTGCAATATTACTGAGGACAAGATATGGATGACAGT...AAAATCCTCAGTCCCATCTGATGTTGCCACATTGCAAGTCTGTTTTGTAGACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTACAAGCCAGTATCATTaGCCCATTCATCTATATCTG +
Preference number: 5 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTTSQYH*PIHLYL
Trigger: CAGATATAGATGAATGGGCAAATGATACTGGCTTGT...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAGCCTCTGGAAATGATTTGCAAATTAAGTGTGCATAGTCCTTGCCCTCTACTCCATCACAGTTGTAGTTaGTCGCTGTTAATCCTAAAT +
Preference number: 5 (lower is better)
Translates to: KPLEMICKLSVHSPCPLLHHSCS*SLLILN
Trigger: ATTTAGGATTAACAGCGACAAACTACAACTGTGATG...GAGTAGAGGGCAAGGACTATGCACACTTAATTTGCAAATCATTTCCAGAGGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp GGTTACTCATCAAATGTCATTAAAATTAGCAGGCCAGAAGGGTCTCCCTTGACTCACTGGATATGGTTCTaGAAACATGTATGTTACAGA +
Preference number: 5 (lower is better)
Translates to: GYSSNVIKISRPEGSPLTHWIWF*KHVCYR
Trigger: TCTGTAACATACATGTTTCAAGAACCATATCCAGTG...AGTCAAGGGAGACCCTTCTGGCCTGCTAATTTTAATGACATTTGATGAGTAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATGAAAGGCTTGTGTTCTaGGTCACTGGATATGGTTCT +
Preference number: 5 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHERLVF*VTGYGS
Trigger: AGAACCATATCCAGTGACCAAGAACACAAGCCTTTC...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp CAACTCATCATTTATCAAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATTTCTGTCAAGGTCTTTaGGACAGTCACAGGTGCAAT +
Preference number: 5 (lower is better)
Translates to: QLIIYQTPYPYAQGFILHFCQGL*DSHRCN
Trigger: ATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAA...ATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTTGATAAATGATGAGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAACACCTTATCCATATGCTCAGGGCTTTATTCTGCATAACCTATACATCTAGGAGCATGATTGTTTCCTaGAATGGAGCTAAATCTGTG +
Preference number: 5 (lower is better)
Translates to: KHLIHMLRALFCITYTSRSMIVS*NGAKSV
Trigger: CACAGATTTAGCTCCATTCAAGGAAACAATCATGCT...CCTAGATGTATAGGTTATGCAGAATAAAGCCCTGAGCATATGGATAAGGTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS-3UTR CAA 90 bp AAAACATTTCCAATCTGTGAGAGAGACAGGAAACAGCAATCAGCCATCCTTCAATCATTTCTAAAGGAATaGTCCAAGTTCTCTGGGTAT +
Preference number: 5 (lower is better)
Translates to: KTFPICERDRKQQSAILQSFLKE*SKFSGY
Trigger: ATACCCAGAGAACTTGGACAATTCCTTTAGAAATGA...TTGAAGGATGGCTGATTGCTGTTTCCTGTCTCTCTCACAGATTGGAAATGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GAGGCCTCCCTCATACTCTGTGGAAGGTTGTCCACCTaGAGTGAGGTCTCCTTGAGGTTTGTCTCAGCTCGG +
Preference number: 6 (lower is better)
Translates to: EASLILCGRLST*SEVSLRFVSAR
Trigger: CCGAGCTGAGACAAACCTCAAGGAGACCTCACTTCAGGTGGACAACCTTCCACAGAGTATGAGGGAGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp GGACCTCCCAATCCACCAGGTGAATGGGGCTCCATCTaGTGTGTTAAGCAGACGGGATCTCCTACAGTGGTA +
Preference number: 6 (lower is better)
Translates to: GPPNPPGEWGSI*CVKQTGSPTVV
Trigger: TACCACTGTAGGAGATCCCGTCTGCTTAACACACCAGATGGAGCCCCATTCACCTGGTGGATTGGGAGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp GTGCCTTTCAGTGGACCTCCCAATCCACCAGGTGAATaGGGCTCCATCTGGTGTGTTAAGCAGACGGGATCT +
Preference number: 6 (lower is better)
Translates to: VPFSGPPNPPGE*GSIWCVKQTGS
Trigger: AGATCCCGTCTGCTTAACACACCAGATGGAGCCCCATTCACCTGGTGGATTGGGAGGTCCACTGAAAGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp ATCAGAGTCCACCATGGAGCCACAGCTGGATTCTGTCAAGGTCTTTaGGACAGTCACAGGTGCAATACTGGCATGGCGGAGGGCTGCCTT +
Preference number: 6 (lower is better)
Translates to: IRVHHGATAGFCQGL*DSHRCNTGMAEGCL
Trigger: AAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCTGTGGCTCCATGGTGGACTCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp CTGGCTATTCAACTGAAGTCGGAAATGGCCTCCCTCTaGGGCCTCCCTCATACTCTGTGGAAGGTTGTCCAC +
Preference number: 6 (lower is better)
Translates to: LAIQLKSEMASL*GLPHTLWKVVH
Trigger: GTGGACAACCTTCCACAGAGTATGAGGGAGGCCTCAGAGGGAGGCCATTTCCGACTTCAGTTGAATAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp GCTGGATTCTGTCAAGGTCTTTTGGACAGTCACAGGTaGAATACTGGCATGGCGGAGGGCTGCCTTCAATGG +
Preference number: 6 (lower is better)
Translates to: AGFCQGLLDSHR*NTGMAEGCLQW
Trigger: CCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp GTCAATCTGGAGCCACTGTTGGGCATTGGAATCTGCTaGGGACCAACCACCAGTTCCCATTCTCCAGTTCAG +
Preference number: 6 (lower is better)
Translates to: VNLEPLLGIGIC*GPTTSSHSPVQ
Trigger: CTGAACTGGAGAATGGGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp ACCATGGAGCCACAGCTGGATTCTGTCAAGGTCTTTTaGACAGTCACAGGTGCAATACTGGCATGGCGGAGG +
Preference number: 6 (lower is better)
Translates to: TMEPQLDSVKVF*TVTGAILAWRR
Trigger: CCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAGAATCCAGCTGTGGCTCCATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp CTCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTaGGGCATTGGAATCTGCTGGGGACCAACCACCAGT +
Preference number: 6 (lower is better)
Translates to: LHSVLQVNLEPL*GIGICWGPTTS
Trigger: ACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp TCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTTaGGCATTGGAATCTGCTGGGGACCAACCACCAGTT +
Preference number: 6 (lower is better)
Translates to: STLFCRSIWSHC*ALESAGDQPPV
Trigger: AACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CCAGCTGCTCCATACTGCCACCATAGTTTAAGGTCATaGAGTAGGGATTCTCAGGACTGGAACCCTGTACCC +
Preference number: 6 (lower is better)
Translates to: PAAPYCHHSLRS*SRDSQDWNPVP
Trigger: GGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGACCTTAAACTATGGTGGCAGTATGGAGCAGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CTGTCAAGGTCTTTTGGACAGTCACAGGTGCAATACTaGCATGGCGGAGGGCTGCCTTCAATGGTGCTATGT +
Preference number: 6 (lower is better)
Translates to: LSRSFGQSQVQY*HGGGLPSMVLC
Trigger: ACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAGTATTGCACCTGTGACTGTCCAAAAGACCTTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp ATCTCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTTGGGCATaGGAATCTGCTGGGGACCAACCACCAGTTCCCATTCTCCAGTTC +
Preference number: 6 (lower is better)
Translates to: ISTLFCRSIWSHCWA*ESAGDQPPVPILQF
Trigger: GAACTGGAGAATGGGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp AGCTGTAATCTCCACTCTGTTTTGCAGGTCAATCTGGAGCCACTGTaGGGCATTGGAATCTGCTGGGGACCAACCACCAGTTCCCATTCT +
Preference number: 6 (lower is better)
Translates to: SCNLHSVLQVNLEPL*GIGICWGPTTSSHS
Trigger: AGAATGGGAACTGGTGGTTGGTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGATTACAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp TCCAGAGAATCTGTGTCACCCTTGGTCCGGAAGTGCTaGGTGTTCATGTCCACAGTGAAGTTTGCCTGCTTG +
Preference number: 6 (lower is better)
Translates to: SRESVSPLVRKC*VFMSTVKFACL
Trigger: CAAGCAGGCAAACTTCACTGTGGACATGAACACTCAGCACTTCCGGACCAAGGGTGACACAGATTCTCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GCTCGATGGGGCCGTTTCCAACATCAATGGCAAATGTaGCCTCAGAAGGGGAGCTCATTTCAAGTCGGAAGA +
Preference number: 6 (lower is better)
Translates to: ARWGRFQHQWQM*PQKGSSFQVGR
Trigger: TCTTCCGACTTGAAATGAGCTCCCCTTCTGAGGTCACATTTGCCATTGATGTTGGAAACGGCCCCATCGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GATGATGTTCCTCCTACAAACAACTGGCTATTCAACTaGAGTCGGAAATGGCCTCCCTCTGAGGCCTCCCTC +
Preference number: 6 (lower is better)
Translates to: DDVPPTNNWLFN*SRKWPPSEASL
Trigger: GAGGGAGGCCTCAGAGGGAGGCCATTTCCGACTTCAGTTGAATAGCCAGTTGTTTGTAGGAGGAACATCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp CTGATCTATAGGAGCATCCATAGGCCTCCACTCTCATaGCAATCTTTCCATTCGGGTTCCACTCTAGGGGCA +
Preference number: 6 (lower is better)
Translates to: LIYRSIHRPPLS*QSFHSGSTLGA
Trigger: TGCCCCTAGAGTGGAACCCGAATGGAAAGATTGGCATGAGAGTGGAGGCCTATGGATGCTCCTATAGATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp ACAGCTGTAATCTCCACTCTGTTTTGCAGGTCAATCTaGAGCCACTGTTGGGCATTGGAATCTGCTGGGGAC +
Preference number: 6 (lower is better)
Translates to: TAVISTLFCRSI*SHCWALESAGD
Trigger: GTCCCCAGCAGATTCCAATGCCCAACAGTGGCTCCAGATTGACCTGCAAAACAGAGTGGAGATTACAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CCTCACAGGATTGCTCATAGATGGAGTCATGGCAGGTaGCTCCAGTGTAACCAGTACCACTACAGTTGCAGT +
Preference number: 6 (lower is better)
Translates to: PHRIAHRWSHGR*LQCNQYHYSCS
Trigger: ACTGCAACTGTAGTGGTACTGGTTACACTGGAGCCACCTGCCATGACTCCATCTATGAGCAATCCTGTGAGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp GCCCTTCTGGAGTTCCAGAGTGATGTGGTCTCCACGTaGTCCTTCTCCATGAAACAGAACTCCATCTCCTTG +
Preference number: 6 (lower is better)
Translates to: ALLEFQSDVVST*SFSMKQNSISL
Trigger: CAAGGAGATGGAGTTCTGTTTCATGGAGAAGGACAACGTGGAGACCACATCACTCTGGAACTCCAGAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp ATGCAGCCTTGGAAAGCCTTAATGGGGTTTAAGCATTaGGAATCGGTGAGATTGTCAGGGCACCCTCCAAAG +
Preference number: 6 (lower is better)
Translates to: MQPWKALMGFKH*ESVRLSGHPPK
Trigger: CTTTGGAGGGTGCCCTGACAATCTCACCGATTCCCAATGCTTAAACCCCATTAAGGCTTTCCAAGGCTGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GGGGACCAACCACCAGTTCCCATTCTCCAGTTCAGTTaGGCTGAACTAGAACTTCCAGTGATATCTGAGGAA +
Preference number: 6 (lower is better)
Translates to: GDQPPVPILQFS*AELELPVISEE
Trigger: TTCCTCAGATATCACTGGAAGTTCTAGTTCAGCTCAACTGAACTGGAGAATGGGAACTGGTGGTTGGTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp ATGGAAAGTTCTGGACCATCTCGGCTAATCTTCACCTaGTGCACTCTTCTGTTGGCCAGATTCTCTGTGTCC +
Preference number: 6 (lower is better)
Translates to: MESSGPSRLIFT*CTLLLARFSVS
Trigger: GGACACAGAGAATCTGGCCAACAGAAGAGTGCATCAGGTGAAGATTAGCCGAGATGGTCCAGAACTTTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp CTGGCATGGCGGAGGGCTGCCTTCAATGGTGCTATGTaGTTGTATTGGACTGAAGAAAGGCATCCAACAAAA +
Preference number: 6 (lower is better)
Translates to: LAWRRAAFNGAM*LYWTEERHPTK
Trigger: TTTTGTTGGATGCCTTTCTTCAGTCCAATACAATCACATAGCACCATTGAAGGCAGCCCTCCGCCATGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp AAATGTCACCACTGCTATGACGCCTCCAATGACTGCTaGGTCACTTCGGACTGCATTTTGGAGTGGTTCATG +
Preference number: 6 (lower is better)
Translates to: KCHHCYDASNDC*VTSDCILEWFM
Trigger: CATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATTGGAGGCGTCATAGCAGTGGTGACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp GTAACACGATTTCTTCTGGCATTGATGCTGACAGAATaGCACAGGCCATCATTTAAGCCACTGCCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: VTRFLLALMLTE*HRPSFKPLPVR
Trigger: CCTCACAGGCAGTGGCTTAAATGATGGCCTGTGGCATTCTGTCAGCATCAATGCCAGAAGAAATCGTGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CATAGTTTAAGGTCATGGAGTAGGGATTCTCAGGACTaGAACCCTGTACCCGAGTCAGCTCTGTGTTGTTGT +
Preference number: 6 (lower is better)
Translates to: HSLRSWSRDSQD*NPVPESALCCC
Trigger: ACAACAACACAGAGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGACCTTAAACTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CCATCTGGTGTGTTAAGCAGACGGGATCTCCTACAGTaGTATATCACCTCCTGTTCACAGTATTCTGAGCCA +
Preference number: 6 (lower is better)
Translates to: PSGVLSRRDLLQ*YITSCSQYSEP
Trigger: TGGCTCAGAATACTGTGAACAGGAGGTGATATACCACTGTAGGAGATCCCGTCTGCTTAACACACCAGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp CCTTCAGTGAGAGGAAGTTGGACAATGGGTCATCACAGTTGTAGTTaGTCGCTGTTAATCCTAAATGCCACAAGCCTGAGAGCACCAAAG +
Preference number: 6 (lower is better)
Translates to: PSVRGSWTMGHHSCS*SLLILNATSLRAPK
Trigger: CTTTGGTGCTCTCAGGCTTGTGGCATTTAGGATTAACAGCGACAAACTACAACTGTGATGACCCATTGTCCAACTTCCTCTCACTGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp TGTCCGGAACTCAACTTCTGGGGAGAAGCTATAGCTGAAGAGTTGTaGGTCCATCTGAATGGAAAGTTCTGGACCATCTCGGCTAATCTT +
Preference number: 6 (lower is better)
Translates to: CPELNFWGEAIAEEL*VHLNGKFWTISANL
Trigger: AAGATTAGCCGAGATGGTCCAGAACTTTCCATTCAGATGGACCAACAACTCTTCAGCTATAGCTTCTCCCCAGAAGTTGAGTTCCGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp ACAAAGCGGGCTCTCACAGAGTGCAGCAGCTTGTGGTaGACCACACTGTCAGAATTCATGTTTCCTACAAAT +
Preference number: 6 (lower is better)
Translates to: TKRALTECSSLW*TTLSEFMFPTN
Trigger: ATTTGTAGGAAACATGAATTCTGACAGTGTGGTTCACCACAAGCTGCTGCACTCTGTGAGAGCCCGCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GTGTCCGGAACTCAACTTCTGGGGAGAAGCTATAGCTaGAGAGTTGTTGGTCCATCTGAATGGAAAGTTCTG +
Preference number: 6 (lower is better)
Translates to: VSGTQLLGRSYS*RVVGPSEWKVL
Trigger: CAGAACTTTCCATTCAGATGGACCAACAACTCTTCAGCTATAGCTTCTCCCCAGAAGTTGAGTTCCGGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp CTCTGGGTATTCCTTCTTCATCTGATTGGTGCGGTGTaGCTGCTTATGTTGATAGAGGAAGCGGGTCATGAT +
Preference number: 6 (lower is better)
Translates to: LWVFLLHLIGAV*LLMLIEEAGHD
Trigger: ATCATGACCCGCTTCCTCTATCAACATAAGCAGTCACACCGCACCAATCAGATGAAGAAGGAATACCCAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp CTGAGCCATCAATCAAAGCTTCCAGCTGCTCCATACTaGCACCATAGTTTAAGGTCATGGAGTAGGGATTCT +
Preference number: 6 (lower is better)
Translates to: LSHQSKLPAAPY*HHSLRSWSRDS
Trigger: AGAATCCCTACTCCATGACCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGATTGATGGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp ACTCTTTCCAGAATAAATCTGTATTCGGGAGGTGTCTaGAGCTGGGGAAGCAGCATCATTATCCAGTGTGAG +
Preference number: 6 (lower is better)
Translates to: TLSRINLYSGGV*SWGSSIIIQCE
Trigger: CTCACACTGGATAATGATGCTGCTTCCCCAGCTCCAGACACCTCCCGAATACAGATTTATTCTGGAAAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp CCTCCAATGACTGCTGAGTCACTTCGGACTGCATTTTaGAGTGGTTCATGGTCATCTGTCTTTCCAAAGGAA +
Preference number: 6 (lower is better)
Translates to: PPMTAESLRTAF*SGSWSSVFPKE
Trigger: TTCCTTTGGAAAGACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATTGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp CTCAACTTCTGGGGAGAAGCTATAGCTGAAGAGTTGTaGGTCCATCTGAATGGAAAGTTCTGGACCATCTCG +
Preference number: 6 (lower is better)
Translates to: LNFWGEAIAEEL*VHLNGKFWTIS
Trigger: CGAGATGGTCCAGAACTTTCCATTCAGATGGACCAACAACTCTTCAGCTATAGCTTCTCCCCAGAAGTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 90 bp AACAAGCCAGTATCATTTGCCCATTCATCTATATCTGCATCACAATaGCAAAAGTGTCGACTGTCCAGGCAGCTTTCCTCCAGGCCACAT +
Preference number: 6 (lower is better)
Translates to: NKPVSFAHSSISASQ*QKCRLSRQLSSRPH
Trigger: ATGTGGCCTGGAGGAAAGCTGCCTGGACAGTCGACACTTTTGCAATTGTGATGCAGATATAGATGAATGGGCAAATGATACTGGCTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp GAACCCTGTACCCGAGTCAGCTCTGTGTTGTTGTGCTaGACTGTCATCCATATCTTGTCCTCAGTAATATTG +
Preference number: 6 (lower is better)
Translates to: EPCTRVSSVLLC*TVIHILSSVIL
Trigger: CAATATTACTGAGGACAAGATATGGATGACAGTTCAGCACAACAACACAGAGCTGACTCGGGTACAGGGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp CCTACAGTGGTATATCACCTCCTGTTCACAGTATTCTaGGCCATCAATCAAAGCTTCCAGCTGCTCCATACT +
Preference number: 6 (lower is better)
Translates to: PTVVYHLLFTVF*AINQSFQLLHT
Trigger: AGTATGGAGCAGCTGGAAGCTTTGATTGATGGCTCAGAATACTGTGAACAGGAGGTGATATACCACTGTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp AGTACCACTACAGTTGCAGTAGAAGGTAGTCCAGGTTaGGTCACAATGTCCTCCATGTTCACAGTAGTTTGG +
Preference number: 6 (lower is better)
Translates to: STTTVAVEGSPG*VTMSSMFTVVW
Trigger: CCAAACTACTGTGAACATGGAGGACATTGTGACCAAACCTGGACTACCTTCTACTGCAACTGTAGTGGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CCA 72 bp GCTGAGTCACTTCGGACTGCATTTTGGAGTGGTTCATaGTCATCTGTCTTTCCAAAGGAATCTGACAAAGAA +
Preference number: 6 (lower is better)
Translates to: AESLRTAFWSGS*SSVFPKESDKE
Trigger: TTCTTTGTCAGATTCCTTTGGAAAGACAGATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp AGAGGAAGTTGGACAATGGGTCATCACAGTTGTAGTTaGTCGCTGTTAATCCTAAATGCCACAAGCCTGAGA +
Preference number: 6 (lower is better)
Translates to: RGSWTMGHHSCS*SLLILNATSLR
Trigger: TCTCAGGCTTGTGGCATTTAGGATTAACAGCGACAAACTACAACTGTGATGACCCATTGTCCAACTTCCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS CAA 72 bp GTATCATTTGCCCATTCATCTATATCTGCATCACAATaGCAAAAGTGTCGACTGTCCAGGCAGCTTTCCTCC +
Preference number: 6 (lower is better)
Translates to: VSFAHSSISASQ*QKCRLSRQLSS
Trigger: GGAGGAAAGCTGCCTGGACAGTCGACACTTTTGCAATTGTGATGCAGATATAGATGAATGGGCAAATGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp ATGTGTAAATCACTAAAACTCCCCAGGGAACCTTGCTaGACTGAAATGAGGTCCTTGGGCTGGTTATCAATA +
Preference number: 6 (lower is better)
Translates to: MCKSLKLPREPC*TEMRSLGWLSI
Trigger: TATTGATAACCAGCCCAAGGACCTCATTTCAGTTCAGCAAGGTTCCCTGGGGAGTTTTAGTGATTTACACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp ATAGCAACGCAAAGGCCCAATTCTCCAAGCAGCTTCTaGGTTTGTTCGGTTGGTATCCATGATAATTATCTG +
Preference number: 6 (lower is better)
Translates to: IATQRPNSPSSF*VCSVGIHDNYL
Trigger: CAGATAATTATCATGGATACCAACCGAACAAACTCAGAAGCTGCTTGGAGAATTGGGCCTTTGCGTTGCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS TCA 72 bp CTGTTGGCCAGATTCTCTGTGTCCATGTTGAATACATaGCTTTCATCCTTGCTTAGTCGATATCGAACCTGT +
Preference number: 6 (lower is better)
Translates to: LLARFSVSMLNT*LSSLLSRYRTC
Trigger: ACAGGTTCGATATCGACTAAGCAAGGATGAAAGTCATGTATTCAACATGGACACAGAGAATCTGGCCAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp CACTGTCAGAATTCATGTTTCCTACAAATGTCCAGATaGTGTCTTCTTGATTGTATGGTTGCCAGTTGTGCC +
Preference number: 6 (lower is better)
Translates to: HCQNSCFLQMSR*CLLDCMVASCA
Trigger: GGCACAACTGGCAACCATACAATCAAGAAGACAGCATCTGGACATTTGTAGGAAACATGAATTCTGACAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp TATCATTTGCCCATTCATCTATATCTGCATCACAATTaGAAAAGTGTCGACTGTCCAGGCAGCTTTCCTCCA +
Preference number: 6 (lower is better)
Translates to: YHLPIHLYLHHN*KSVDCPGSFPP
Trigger: TGGAGGAAAGCTGCCTGGACAGTCGACACTTTTGCAATTGTGATGCAGATATAGATGAATGGGCAAATGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9
CDS GCA 72 bp ATGTGCCAGAATCAAAAAGAGCTGAAATTTCTTTCCTaGAGAAAGGTCCTTCATACGGTGAGTTGGTACAGT +
Preference number: 6 (lower is better)
Translates to: MCQNQKELKFLS*RKVLHTVSWYS
Trigger: ACTGTACCAACTCACCGTATGAAGGACCTTTCTGCAGGAAAGAAATTTCAGCTCTTTTTGATTCTGGCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043725.9