RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNTN6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030092

Ensembl transcript IDs: ENSMUST00000089215.12, ENSMUST00000161070.8, ENSMUST00000162872.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACAAGTCTGTATTAAGAATATGTCTTGTGATAGAGGCTGGAGAATaGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCA +
Preference number: 1 (lower is better)
Translates to: NKSVLRICLVIEAGE*IYRMVCSQKIPKDP
Trigger: TGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAGACATATTCTTAATACAGACTTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
3UTR CCA 90 bp CTTTCCAAACAAGTCTGTATTAAGAATATGTCTTGTGATAGAGGCTaGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAA +
Preference number: 1 (lower is better)
Translates to: LSKQVCIKNMSCDRG*RMDLQNGLLSENSQ
Trigger: TTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAGACATATTCTTAATACAGACTTGTTTGGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
3UTR CCA 72 bp CAAGTCTGTATTAAGAATATGTCTTGTGATAGAGGCTaGAGAATGGATTTACAGAATGGTTTGCTCTCAGAA +
Preference number: 3 (lower is better)
Translates to: QVCIKNMSCDRG*RMDLQNGLLSE
Trigger: TTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAGACATATTCTTAATACAGACTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCCTCTTGGGGCCAGCTaGGGCTCATCTTCCCCAGAG +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIPLGAS*GSSSPE
Trigger: CTCTGGGGAAGATGAGCCTCAGCTGGCCCCAAGAGG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCTGTTCTGGGGCTGCTaGTGGCCAAACTGCCTCCAT +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWLFWGC*WPNCLH
Trigger: ATGGAGGCAGTTTGGCCATCAGCAGCCCCAGAACAG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAGGTTCTCAGCAGCTCTaGTGGTTTGCTTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRGSQQL*WFAWLS
Trigger: GGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACC...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGATCCTCTGGGGGCCCTaGGGGACCTCTCACAATGAT +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWILWGP*GTSHND
Trigger: ATCATTGTGAGAGGTCCCCCAGGGCCCCCAGAGGAT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCTCATATTCCCCCATaGCACCATCAGTGCGCAGCA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHAHIPP*HHQCAA
Trigger: TGCTGCGCACTGATGGTGTCATGGGGGAATATGAGC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGCTCATATTCCCCCATaGCACCATCAGTGCGCAGCA +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIAHIPP*HHQCAA
Trigger: TGCTGCGCACTGATGGTGTCATGGGGGAATATGAGC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGGTTCTCAGCAGCTCTaGTGGTTTGCTTGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIGSQQL*WFAWLS
Trigger: GGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAATTAACTGGCAGACTTaGGGGTCCAGTCCCTGCAGT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRINWQT*GSSPCS
Trigger: ACTGCAGGGACTGGACCCTCAAGTCTGCCAGTTAAT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAAAAACCCCAACCATTaGCAGGGACTGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWKNPNH*QGLGAG
Trigger: CCCAGCACCCAGTCCCTGTCAATGGTTGGGGTTTTT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGAAAAACCCCAACCATTaGCAGGGACTGGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMKNPNH*QGLGAG
Trigger: CCCAGCACCCAGTCCCTGTCAATGGTTGGGGTTTTT...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAACTGTAGCAACCGCTTaGCAGCCCACAGAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRTVATA*QPTEKG
Trigger: ACCCTTTTCTGTGGGCTGGCAAGCGGTTGCTACAGT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACTTCCAGGCAATGTTTaGTGGTGGTTGGCTAGGAGG +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLPGNV*WWLARR
Trigger: CCTCCTAGCCAACCACCAGCAAACATTGCCTGGAAG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTATCCTCTGGGGGCCCTaGGGGACCTCTCACAATGAT +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIILWGP*GTSHND
Trigger: ATCATTGTGAGAGGTCCCCCAGGGCCCCCAGAGGAT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGGACAGAAGTTCCTCTTaGGGCCAGCTGAGGCTCATC +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWDRSSS*GQLRLI
Trigger: GATGAGCCTCAGCTGGCCCCAAGAGGAACTTCTGTC...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGACAGAAGTTCCTCTTaGGGCCAGCTGAGGCTCATC +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHDRSSS*GQLRLI
Trigger: GATGAGCCTCAGCTGGCCCCAAGAGGAACTTCTGTC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCCAGGCAATGTTTGCTaGTGGTTGGCTAGGAGGGGA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMPGNVC*WLARRG
Trigger: TCCCCTCCTAGCCAACCACCAGCAAACATTGCCTGG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCCAGGCAATGTTTGCTaGTGGTTGGCTAGGAGGGGA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWPGNVC*WLARRG
Trigger: TCCCCTCCTAGCCAACCACCAGCAAACATTGCCTGG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGGATTTGCTGTACTTaGTTTTCCCTGGCATCGGGC +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGICCT*FSLASG
Trigger: GCCCGATGCCAGGGAAAATCAAGTACAGCAAATCCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGATTAACTGGCAGACTTaGGGGTCCAGTCCCTGCAGT +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMINWQT*GSSPCS
Trigger: ACTGCAGGGACTGGACCCTCAAGTCTGCCAGTTAAT...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGACTGTAGCAACCGCTTaGCAGCCCACAGAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWTVATA*QPTEKG
Trigger: ACCCTTTTCTGTGGGCTGGCAAGCGGTTGCTACAGT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCTTCCAGGCAATGTTTaGTGGTGGTTGGCTAGGAGG +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWLPGNV*WWLARR
Trigger: CCTCCTAGCCAACCACCAGCAAACATTGCCTGGAAG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGTGCCCACAGGATTGGTaGCCAGACACTGGTATATGC +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWCPQDW*PDTGIC
Trigger: GCATATACCAGTGTCTGGCCACCAATCCTGTGGGCA...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTGGTGCCCACAGGATTaGTGGCCAGACACTGGTATA +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIWCPQD*WPDTGI
Trigger: TATACCAGTGTCTGGCCACCAATCCTGTGGGCACCA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTGGTGCCCACAGGATTaGTGGCCAGACACTGGTATA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMWCPQD*WPDTGI
Trigger: TATACCAGTGTCTGGCCACCAATCCTGTGGGCACCA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGCAATGTTTGCTGGTaGTTGGCTAGGAGGGGACTT +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGNVCW*LARRGL
Trigger: AAGTCCCCTCCTAGCCAACCACCAGCAAACATTGCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGGACCTCTCACAATaGTATCAGCTACAGCAGACA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHGDLSQ*YQLQQT
Trigger: TGTCTGCTGTAGCTGATATCATTGTGAGAGGTCCCC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGGGACCTCTCACAATaGTATCAGCTACAGCAGACA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGDLSQ*YQLQQT
Trigger: TGTCTGCTGTAGCTGATATCATTGTGAGAGGTCCCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACTACTGGCCGAAACATaGCGATATATCCAAACCCCT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLLAET*RYIQTP
Trigger: AGGGGTTTGGATATATCGTCATGTTTCGGCCAGTAG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCTCGAAGGTTACCTaGGATGCATTCATAGAAGCC +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRSSKVT*DAFIEA
Trigger: GGCTTCTATGAATGCATCGCAGGTAACCTTCGAGGA...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACTTTTCTACTCAGAATaGTGCCCACAGGATTGGTGG +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLFYSE*CPQDWW
Trigger: CCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGTTATTATCAGGACCTaGTCTCCAGCTGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMVIIRT*SPAELG
Trigger: TCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAAC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTTATTATCAGGACCTaGTCTCCAGCTGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHVIIRT*SPAELG
Trigger: TCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAAC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATTGGGGACTGATGCTTTaGTTCTCAGCAGCTCTGATG +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHWGLML*FSAALM
Trigger: CATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCA...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTGGGGACTGATGCTTTaGTTCTCAGCAGCTCTGATG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIWGLML*FSAALM
Trigger: CATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCCAGAGTAGACAATaGTCACAGTACTCAGGGATC +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIPQSRQ*SQYSGI
Trigger: GATCCCTGAGTACTGTGACCATTGTCTACTCTGGGG...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCCCCAGAGTAGACAATaGTCACAGTACTCAGGGATC +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHPQSRQ*SQYSGI
Trigger: GATCCCTGAGTACTGTGACCATTGTCTACTCTGGGG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATATATGCCAATATCTTaGTCTGTTCTGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRYMPIS*SVLGLL
Trigger: CAGCAGCCCCAGAACAGATCAAGATATTGGCATATA...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCTACTGGCCGAAACATaGCGATATATCCAAACCCCT +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLLAET*RYIQTP
Trigger: AGGGGTTTGGATATATCGTCATGTTTCGGCCAGTAG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTGTACACTCCCACTTTaGCTTCAAAGGGAGACAGAG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKICTLPL*LQRETE
Trigger: CTCTGTCTCCCTTTGAAGTCAAAGTGGGAGTGTACA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGAAACGACCCTCACCTaGACAAGAGTTTATGAGTGG +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMETTLT*TRVYEW
Trigger: CCACTCATAAACTCTTGTGCAGGTGAGGGTCGTTTC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGAAACGACCCTCACCTaGACAAGAGTTTATGAGTGG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIETTLT*TRVYEW
Trigger: CCACTCATAAACTCTTGTGCAGGTGAGGGTCGTTTC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTTTCTACTCAGAATGGTaGCCACAGGATTGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIFYSEW*PQDWWP
Trigger: TGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAA...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTCCTCGAAGGTTACCTaGGATGCATTCATAGAAGCC +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKISSKVT*DAFIEA
Trigger: GGCTTCTATGAATGCATCGCAGGTAACCTTCGAGGA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCAGCTCTGATGGTTTaGTTGGCTCTCCAATTCCAA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHAALMV*LALQFQ
Trigger: TTGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAACATCTTGTGGCTCCTaGATAAAAATAGGACGGCTG +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRTSCGS*IKIGRL
Trigger: CAGCCGTCCTATTTTTATCCAGGAGCCACAAGATGT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCTTTTCTACTCAGAATaGTGCCCACAGGATTGGTGG +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLFYSE*CPQDWW
Trigger: CCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGATAGAACTTCCATGGTaGGGTCATGAGACACTTGGC +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMIELPW*GHETLG
Trigger: GCCAAGTGTCTCATGACCCCACCATGGAAGTTCTAT...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTATGTTTGCTGGTGGTTaGCTAGGAGGGGACTTTTTG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIMFAGG*LGGDFL
Trigger: CAAAAAGTCCCCTCCTAGCCAACCACCAGCAAACAT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
3UTR CAA 72 bp TGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTaGCTCTCAGAAAATTCCCAAAGATCCATGGATTGG +
Preference number: 4 (lower is better)
Translates to: CDRGWRMDLQNG*LSENSQRSMDW
Trigger: CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCTGCACAAGAGTTTATaGGTGGCAGCAGAATTACCA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHLHKSL*VAAELP
Trigger: TGGTAATTCTGCTGCCACTCATAAACTCTTGTGCAG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCTGCACAAGAGTTTATaGGTGGCAGCAGAATTACCA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWLHKSL*VAAELP
Trigger: TGGTAATTCTGCTGCCACTCATAAACTCTTGTGCAG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAAATCCAAAGGAAAAATaGCATCTTGTGGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRNPKEK*HLVAPG
Trigger: TCCAGGAGCCACAAGATGTCATTTTTCCTTTGGATT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTATATGCCAATATCTTaGTCTGTTCTGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMYMPIS*SVLGLL
Trigger: CAGCAGCCCCAGAACAGATCAAGATATTGGCATATA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCTTCGCTTGTCCTCTTaGACATACAAAGGGCTATCA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHLRLSS*TYKGLS
Trigger: TGATAGCCCTTTGTATGTTCAAGAGGACAAGCGAAG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCTTCGCTTGTCCTCTTaGACATACAAAGGGCTATCA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWLRLSS*TYKGLS
Trigger: TGATAGCCCTTTGTATGTTCAAGAGGACAAGCGAAG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGTAGATCCCAGAGTCTaGAATGTTCAGCATGGTGAT +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMVDPRV*NVQHGD
Trigger: ATCACCATGCTGAACATTTCAGACTCTGGGATCTAC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAATAGATGAACTTGGATaGTTCTACAAGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRIDELG*FYKSHP
Trigger: AGGGTGGCTCTTGTAGAATCATCCAAGTTCATCTAT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTTGTACACTCCCACTTTaGCTTCAAAGGGAGACAGAG +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWICTLPL*LQRETE
Trigger: CTCTGTCTCCCTTTGAAGTCAAAGTGGGAGTGTACA...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACTGATATTTGTTTTCTaGAGCACACTGGTAGATCCC +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLIFVF*STLVDP
Trigger: GGGATCTACCAGTGTGCTGCAGAAAACAAATATCAG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGCAGCTCTGATGGTTTaGTTGGCTCTCCAATTCCAA +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIAALMV*LALQFQ
Trigger: TTGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGC...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTACATCTTGTGGCTCCTaGATAAAAATAGGACGGCTG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKITSCGS*IKIGRL
Trigger: CAGCCGTCCTATTTTTATCCAGGAGCCACAAGATGT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCCTTGGACACTTCTATaGGCCTCTTTGTTTGTGACA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWPWTLL*ASLFVT
Trigger: TGTCACAAACAAAGAGGCCCATAGAAGTGTCCAAGG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAAGGAAATCGATGCTTTaGGGAAAGCATTTGGTTTGC +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRRKSML*GKHLVC
Trigger: GCAAACCAAATGCTTTCCCCAAAGCATCGATTTCCT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTATAGAACTTCCATGGTaGGGTCATGAGACACTTGGC +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIIELPW*GHETLG
Trigger: GCCAAGTGTCTCATGACCCCACCATGGAAGTTCTAT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGGAAGCAGAAAAACTCTaGACAGAAGTTCCTCTTGGG +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWEAEKL*TEVPLG
Trigger: CCCAAGAGGAACTTCTGTCCAGAGTTTTTCTGCTTC...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTATGTTTGCTGGTGGTTaGCTAGGAGGGGACTTTTTG +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIMFAGG*LGGDFL
Trigger: CAAAAAGTCCCCTCCTAGCCAACCACCAGCAAACAT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAATCCAAAGGAAAAATaGCATCTTGTGGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWNPKEK*HLVAPG
Trigger: TCCAGGAGCCACAAGATGTCATTTTTCCTTTGGATT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGAAGTTCCCTGTGTCTTaGGATACAAATCTTCGCTTG +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMKFPVS*DTNLRL
Trigger: CAAGCGAAGATTTGTATCTCAAGACACAGGGAACTT...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAAGTTCCCTGTGTCTTaGGATACAAATCTTCGCTTG +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWKFPVS*DTNLRL
Trigger: CAAGCGAAGATTTGTATCTCAAGACACAGGGAACTT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGCCTCTTTGTTTGTaGCAAAGCAAGTATAATTGC +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHGPLCL*QSKYNC
Trigger: GCAATTATACTTGCTTTGTCACAAACAAAGAGGCCC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGGCCTCTTTGTTTGTaGCAAAGCAAGTATAATTGC +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGPLCL*QSKYNC
Trigger: GCAATTATACTTGCTTTGTCACAAACAAAGAGGCCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGTAGATCCCAGAGTCTaGAATGTTCAGCATGGTGAT +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIVDPRV*NVQHGD
Trigger: ATCACCATGCTGAACATTTCAGACTCTGGGATCTAC...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGATAGATGAACTTGGATaGTTCTACAAGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWIDELG*FYKSHP
Trigger: AGGGTGGCTCTTGTAGAATCATCCAAGTTCATCTAT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACCAGACACTGGTATATaGCAATATCTTGATCTGTTC +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRPDTGI*QYLDLF
Trigger: GAACAGATCAAGATATTGGCATATACCAGTGTCTGG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCTCGGACAGATACTGTaGTTCTGGTTTTGGTTTCAA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWLGQIL*FWFWFQ
Trigger: TTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCTCGGACAGATACTGTaGTTCTGGTTTTGGTTTCAA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLGQIL*FWFWFQ
Trigger: TTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTTTCCAGGAAATCGATaGTTTGGGGAAAGCATTTGG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIFPGNR*FGESIW
Trigger: CCAAATGCTTTCCCCAAAGCATCGATTTCCTGGAAA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGTTTCCAGGAAATCGATaGTTTGGGGAAAGCATTTGG +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWFPGNR*FGESIW
Trigger: CCAAATGCTTTCCCCAAAGCATCGATTTCCTGGAAA...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAATGCAAACTGTAGCTTaGCTTTTCTACTCAGAATGG +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRMQTVA*LFYSEW
Trigger: CCATTCTGAGTAGAAAAGCCAAGCTACAGTTTGCAT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCAGATGGTTCTACTTTaGCAAAGTACAAGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHQMVLL*QSTSSL
Trigger: CAGGGAACTTGTACTTTGCCAAAGTAGAACCATCTG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCAGATGGTTCTACTTTaGCAAAGTACAAGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIQMVLL*QSTSSL
Trigger: CAGGGAACTTGTACTTTGCCAAAGTAGAACCATCTG...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCCTTGGACACTTCTATaGGCCTCTTTGTTTGTGACA +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIPWTLL*ASLFVT
Trigger: TGTCACAAACAAAGAGGCCCATAGAAGTGTCCAAGG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTACTAATATCAGGGACTaGATTTCCAAGGGCAAAGCA +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKITNIRD*ISKGKA
Trigger: TGCTTTGCCCTTGGAAATCCAGTCCCTGATATTAGT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGACTAATATCAGGGACTaGATTTCCAAGGGCAAAGCA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWTNIRD*ISKGKA
Trigger: TGCTTTGCCCTTGGAAATCCAGTCCCTGATATTAGT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCGTGTACGAAGGATTTaGATTTCCACTAGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWRVRRI*ISTSFA
Trigger: TGCAAAGCTAGTGGAAATCCAAATCCTTCGTACACG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCGTGTACGAAGGATTTaGATTTCCACTAGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMRVRRI*ISTSFA
Trigger: TGCAAAGCTAGTGGAAATCCAAATCCTTCGTACACG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTACAAAGGGCTATCATTaGAGGTCCAGGCATATGATA +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWITKGYH*RSRHMI
Trigger: TATCATATGCCTGGACCTTCAATGATAGCCCTTTGT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCTGATATTTGTTTTCTaGAGCACACTGGTAGATCCC +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWILIFVF*STLVDP
Trigger: GGGATCTACCAGTGTGCTGCAGAAAACAAATATCAG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAACAAGAGTTTATGAGTaGCAGCAGAATTACCAGTTT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRTRVYE*QQNYQF
Trigger: AAACTGGTAATTCTGCTGCCACTCATAAACTCTTGT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTATAGTCTTCTTCAAATaGAACCAGGAGTTCAGCAGA +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIIVFFK*NQEFSR
Trigger: TCTGCTGAACTCCTGGTTCCATTTGAAGAAGACTAT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGATAGTCTTCTTCAAATaGAACCAGGAGTTCAGCAGA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWIVFFK*NQEFSR
Trigger: TCTGCTGAACTCCTGGTTCCATTTGAAGAAGACTAT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTCCCATTTTCAATCTaGATTCTTTCTTCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHVPFSI*ILSSVL
Trigger: CAACACAGAAGAAAGAATTCAGATTGAAAATGGGAC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCCCGAATGGCCTAATTaGATATTCCTTATCATCAAA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMPEWPN*IFLIIK
Trigger: TTTGATGATAAGGAATATTCAATTAGGCCATTCGGG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCCAGACACTGGTATATaGCAATATCTTGATCTGTTC +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIPDTGI*QYLDLF
Trigger: GAACAGATCAAGATATTGGCATATACCAGTGTCTGG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCAAAGCAAGTATAATTaGCCACATCAGATGGTTCTA +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHQSKYN*PHQMVL
Trigger: TAGAACCATCTGATGTGGGCAATTATACTTGCTTTG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCAAAGCAAGTATAATTaGCCACATCAGATGGTTCTA +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMQSKYN*PHQMVL
Trigger: TAGAACCATCTGATGTGGGCAATTATACTTGCTTTG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTCCATGGTTTTTACATaGTCCCAGTTCAAGCATAAT +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKISMVFT*SQFKHN
Trigger: ATTATGCTTGAACTGGGAGCATGTAAAAACCATGGA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATACAAGAGTTTATGAGTaGCAGCAGAATTACCAGTTT +
Preference number: 4 (lower is better)
Translates to: LENGFTEWFALRKFPKIHTRVYE*QQNYQF
Trigger: AAACTGGTAATTCTGCTGCCACTCATAAACTCTTGT...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAATTTCAAGGATAGCTTaGGATTTGCTGTACTTGATT +
Preference number: 4 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRISRIA*DLLYLI
Trigger: AATCAAGTACAGCAAATCCCAAGCTATCCTTGAAAT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGTCCCATTTTCAATCTaGATTCTTTCTTCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIVPFSI*ILSSVL
Trigger: CAACACAGAAGAAAGAATTCAGATTGAAAATGGGAC...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR TCA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCCCGAATGGCCTAATTaGATATTCCTTATCATCAAA +
Preference number: 4 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIPEWPN*IFLIIK
Trigger: TTTGATGATAAGGAATATTCAATTAGGCCATTCGGG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGTGTTGTTTGTACTGTaGATAGATATTTTCCCGAAT +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIVLFVL*IDIFPN
Trigger: ATTCGGGAAAATATCTATGCACAGTACAAACAACAC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR GCA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGTGTTGTTTGTACTGTaGATAGATATTTTCCCGAAT +
Preference number: 4 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMVLFVL*IDIFPN
Trigger: ATTCGGGAAAATATCTATGCACAGTACAAACAACAC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTATTTCAAGGATAGCTTaGGATTTGCTGTACTTGATT +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIISRIA*DLLYLI
Trigger: AATCAAGTACAGCAAATCCCAAGCTATCCTTGAAAT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAACATCCATTTTAGATaGTGGTACTGTAATGATCGT +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWNIHFR*WYCNDR
Trigger: ACGATCATTACAGTACCACCATCTAAAATGGATGTT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTAACATCCATTTTAGATaGTGGTACTGTAATGATCGT +
Preference number: 4 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKINIHFR*WYCNDR
Trigger: ACGATCATTACAGTACCACCATCTAAAATGGATGTT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CCA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCCAATTCGTTCAAAATaGGCTACTCCTTTCTTTAAA +
Preference number: 4 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWPIRSK*ATPFFK
Trigger: TTTAAAGAAAGGAGTAGCCCATTTTGAACGAATTGG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS TCA 90 bp GTGCCCACAGGATTGGTGGCCAGACACTGGTATATGCCAATATCTTaGTCTGTTCTGGGGCTGCTGATGGCCAAACTGCCTCCATCCAAC +
Preference number: 5 (lower is better)
Translates to: VPTGLVARHWYMPIS*SVLGLLMAKLPPSN
Trigger: GTTGGATGGAGGCAGTTTGGCCATCAGCAGCCCCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 90 bp TTCCTCTTGGGGCCAGCTGAGGCTCATCTTCCCCAGAGTAGACAATaGTCACAGTACTCAGGGATCCCTCTCCTTCATTATTGTACACTC +
Preference number: 5 (lower is better)
Translates to: FLLGPAEAHLPQSRQ*SQYSGIPLLHYCTL
Trigger: GAGTGTACAATAATGAAGGAGAGGGATCCCTGAGTACTGTGACCATTGTCTACTCTGGGGAAGATGAGCCTCAGCTGGCCCCAAGAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 90 bp ACTGTAGCTTGGCTTTTCTACTCAGAATGGTGCCCACAGGATTGGTaGCCAGACACTGGTATATGCCAATATCTTGATCTGTTCTGGGGC +
Preference number: 5 (lower is better)
Translates to: TVAWLFYSEWCPQDW*PDTGICQYLDLFWG
Trigger: GCCCCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCAAGCTACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 90 bp CCAGACACTGGTATATGCCAATATCTTGATCTGTTCTGGGGCTGCTaGTGGCCAAACTGCCTCCATCCAACCTATAGTGATAAGTCATGC +
Preference number: 5 (lower is better)
Translates to: PDTGICQYLDLFWGC*WPNCLHPTYSDKSC
Trigger: GCATGACTTATCACTATAGGTTGGATGGAGGCAGTTTGGCCATCAGCAGCCCCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS TCA 90 bp GGGAGACAGAGGCATGATGCTTTCATTTCTATAGATGAACTTGGATaGTTCTACAAGAGCCACCCTTTCTTTCATCCAGGCGGTTGTGCC +
Preference number: 5 (lower is better)
Translates to: GRQRHDAFISIDELG*FYKSHPFFHPGGCA
Trigger: GGCACAACCGCCTGGATGAAAGAAAGGGTGGCTCTTGTAGAATCATCCAAGTTCATCTATAGAAATGAAAGCATCATGCCTCTGTCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 90 bp CAAACTGTAGCTTGGCTTTTCTACTCAGAATGGTGCCCACAGGATTaGTGGCCAGACACTGGTATATGCCAATATCTTGATCTGTTCTGG +
Preference number: 5 (lower is better)
Translates to: QTVAWLFYSEWCPQD*WPDTGICQYLDLFW
Trigger: CCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCAAGCTACAGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGGACTGTAGCAACCGCTaGCCAGCCCACAGAAAAGGG +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWDCSNR*PAHRKG
Trigger: CCCTTTTCTGTGGGCTGGCAAGCGGTTGCTACAGTC...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGACAGAAGTTCCTCTaGGGGCCAGCTGAGGCTCAT +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHGQKFL*GPAEAH
Trigger: ATGAGCCTCAGCTGGCCCCAAGAGGAACTTCTGTCC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGACAGAAGTTCCTCTaGGGGCCAGCTGAGGCTCAT +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGQKFL*GPAEAH
Trigger: ATGAGCCTCAGCTGGCCCCAAGAGGAACTTCTGTCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS CCA 90 bp AGTTTGAATAGTAAAAATTTGAATGGGGCTGTTATTATCAGGACCTaGTCTCCAGCTGAGCTGGGAGGTCGTACTAGAGATGTGCTCCAC +
Preference number: 5 (lower is better)
Translates to: SLNSKNLNGAVIIRT*SPAELGGRTRDVLH
Trigger: GTGGAGCACATCTCTAGTACGACCTCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAACAGCCCCATTCAAATTTTTACTATTCAAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGATGGTGCCCACAGGATaGGTGGCCAGACACTGGTAT +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMMVPTG*VARHWY
Trigger: ATACCAGTGTCTGGCCACCAATCCTGTGGGCACCAT...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTATGGTGCCCACAGGATaGGTGGCCAGACACTGGTAT +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIMVPTG*VARHWY
Trigger: ATACCAGTGTCTGGCCACCAATCCTGTGGGCACCAT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGACTGTAGCAACCGCTaGCCAGCCCACAGAAAAGGG +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIDCSNR*PAHRKG
Trigger: CCCTTTTCTGTGGGCTGGCAAGCGGTTGCTACAGTC...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCTTCCACCGCCTCCATaGATATTTCCTGGTGCCACA +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKILPPPP*IFPGAT
Trigger: TGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAG...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCTTCCACCGCCTCCATaGATATTTCCTGGTGCCACA +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLPPPP*IFPGAT
Trigger: TGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS GCA 90 bp CTTCAATATATGCAAACTGTAGCTTGGCTTTTCTACTCAGAATGGTaGCCACAGGATTGGTGGCCAGACACTGGTATATGCCAATATCTT +
Preference number: 5 (lower is better)
Translates to: LQYMQTVAWLFYSEW*PQDWWPDTGICQYL
Trigger: AAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCAAGCTACAGTTTGCATATATTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 90 bp GGCCACAGAGTAGTACCACTCCTTGACCTTCTCGGACAGATACTGTaGTTCTGGTTTTGGTTTCAAAGTCTTCAATATATGCAAACTGTA +
Preference number: 5 (lower is better)
Translates to: GHRVVPLLDLLGQIL*FWFWFQSLQYMQTV
Trigger: TACAGTTTGCATATATTGAAGACTTTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAGAAGGTCAAGGAGTGGTACTACTCTGTGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 90 bp ATTGCCAAATTGATTTGTAGCTACACAGGTGTAAGACCCAGCATCTaGTCTGGTAACATTGCATATCTTAAGGCTGCCATCCTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: IAKLICSYTGVRPSI*SGNIAYLKAAILQE
Trigger: TTCTTGGAGGATGGCAGCCTTAAGATATGCAATGTTACCAGAGCAGATGCTGGGTCTTACACCTGTGTAGCTACAAATCAATTTGGCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 90 bp AACACGAAATTCGTATTCCACCCAAGGACTCAAACCAACGACTGTTaGATTGTATGTCTGTCCATTGAGAATTTCAGGGACTGTAGCAAC +
Preference number: 5 (lower is better)
Translates to: NTKFVFHPRTQTNDC*IVCLSIENFRDCSN
Trigger: GTTGCTACAGTCCCTGAAATTCTCAATGGACAGACATACAATGCAACAGTCGTTGGTTTGAGTCCTTGGGTGGAATACGAATTTCGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 90 bp TCAGATCTAGATAAATCCAAAGGAAAAATGACATCTTGTGGCTCCTaGATAAAAATAGGACGGCTGAAACGACCCTCACCTGCACAAGAG +
Preference number: 5 (lower is better)
Translates to: SDLDKSKGKMTSCGS*IKIGRLKRPSPAQE
Trigger: CTCTTGTGCAGGTGAGGGTCGTTTCAGCCGTCCTATTTTTATCCAGGAGCCACAAGATGTCATTTTTCCTTTGGATTTATCTAGATCTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTGGGATTTGCTGTACTaGATTTTCCCTGGCATCGGG +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIWDLLY*IFPGIG
Trigger: CCCGATGCCAGGGAAAATCAAGTACAGCAAATCCCA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTTGGGGACTGATGCTTaGGTTCTCAGCAGCTCTGAT +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKILGTDA*VLSSSD
Trigger: ATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS TCA 90 bp ATACAAATCTTCGCTTGTCCTCTTGAACATACAAAGGGCTATCATTaGAGGTCCAGGCATATGATAATTCTCCAAAATGTGGTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: IQIFACPLEHTKGYH*RSRHMIILQNVVVG
Trigger: GCCCACCACCACATTTTGGAGAATTATCATATGCCTGGACCTTCAATGATAGCCCTTTGTATGTTCAAGAGGACAAGCGAAGATTTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 90 bp AGAGTAGTACCACTCCTTGACCTTCTCGGACAGATACTGTGCTTCTaGTTTTGGTTTCAAAGTCTTCAATATATGCAAACTGTAGCTTGG +
Preference number: 5 (lower is better)
Translates to: RVVPLLDLLGQILCF*FWFQSLQYMQTVAW
Trigger: CCAAGCTACAGTTTGCATATATTGAAGACTTTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAGAAGGTCAAGGAGTGGTACTACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTTGGGATTTGCTGTACTaGATTTTCCCTGGCATCGGG +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIWDLLY*IFPGIG
Trigger: CCCGATGCCAGGGAAAATCAAGTACAGCAAATCCCA...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGCTCTGATGGTTTGCTaGGCTCTCCAATTCCAATGT +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIALMVC*ALQFQC
Trigger: ACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTTTGGGGACTGATGCTTaGGTTCTCAGCAGCTCTGAT +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWILGTDA*VLSSSD
Trigger: ATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAA...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATTGTACACTCCCACTTaGACTTCAAAGGGAGACAGA +
Preference number: 5 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLYTPT*TSKGDR
Trigger: TCTGTCTCCCTTTGAAGTCAAAGTGGGAGTGTACAA...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAATGTTTGCTGGTGGTaGGCTAGGAGGGGACTTTTT +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWNVCWW*ARRGLF
Trigger: AAAAAGTCCCCTCCTAGCCAACCACCAGCAAACATT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATAATGTTTGCTGGTGGTaGGCTAGGAGGGGACTTTTT +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHNVCWW*ARRGLF
Trigger: AAAAAGTCCCCTCCTAGCCAACCACCAGCAAACATT...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS TCA 90 bp TGTCTGATATTTGTTTTCTGCAGCACACTGGTAGATCCCAGAGTCTaGAATGTTCAGCATGGTGATGATAAGAGTCCCATTTTCAATCTG +
Preference number: 5 (lower is better)
Translates to: CLIFVFCSTLVDPRV*NVQHGDDKSPIFNL
Trigger: CAGATTGAAAATGGGACTCTTATCATCACCATGCTGAACATTTCAGACTCTGGGATCTACCAGTGTGCTGCAGAAAACAAATATCAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTCTTCGCTTGTCCTCTaGAACATACAAAGGGCTATC +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKISSLVL*NIQRAI
Trigger: GATAGCCCTTTGTATGTTCAAGAGGACAAGCGAAGA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATTCTTCGCTTGTCCTCTaGAACATACAAAGGGCTATC +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHSSLVL*NIQRAI
Trigger: GATAGCCCTTTGTATGTTCAAGAGGACAAGCGAAGA...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGGATTTCCACTAGCTTaGCATTCCCAAAACAAGCTG +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMGFPLA*HSQNKL
Trigger: CAGCTTGTTTTGGGAATGCAAAGCTAGTGGAAATCC...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATTCTCCAATTCCAATGTaGTTCCCAGCAACAACACGA +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHSPIPM*FPATTR
Trigger: TCGTGTTGTTGCTGGGAACAACATTGGAATTGGAGA...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTCTCCAATTCCAATGTaGTTCCCAGCAACAACACGA +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMSPIPM*FPATTR
Trigger: TCGTGTTGTTGCTGGGAACAACATTGGAATTGGAGA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGCTCTGATGGTTTGCTaGGCTCTCCAATTCCAATGT +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIALMVC*ALQFQC
Trigger: ACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGC...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTTGTACACTCCCACTTaGACTTCAAAGGGAGACAGA +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLYTPT*TSKGDR
Trigger: TCTGTCTCCCTTTGAAGTCAAAGTGGGAGTGTACAA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGCCTTTGCAGCTTGTATaGTTTCAGGAAAACGCACTT +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMPLQLV*FQENAL
Trigger: AAGTGCGTTTTCCTGAAACAATACAAGCTGCAAAGG...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATCCTTTGCAGCTTGTATaGTTTCAGGAAAACGCACTT +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHPLQLV*FQENAL
Trigger: AAGTGCGTTTTCCTGAAACAATACAAGCTGCAAAGG...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATAGGATAGCTTGGGATTaGCTGTACTTGATTTTCCCT +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHRIAWD*LYLIFP
Trigger: AGGGAAAATCAAGTACAGCAAATCCCAAGCTATCCT...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAGGATAGCTTGGGATTaGCTGTACTTGATTTTCCCT +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWRIAWD*LYLIFP
Trigger: AGGGAAAATCAAGTACAGCAAATCCCAAGCTATCCT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATTGTATGTCTGTCCATaGAGAATTTCAGGGACTGTA +
Preference number: 5 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRLYVCP*RISGTV
Trigger: TACAGTCCCTGAAATTCTCAATGGACAGACATACAA...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTCAAACCAACGACTGTaGCATTGTATGTCTGTCCAT +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMSNQRL*HCMSVH
Trigger: ATGGACAGACATACAATGCAACAGTCGTTGGTTTGA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTTCAAACCAACGACTGTaGCATTGTATGTCTGTCCAT +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKISNQRL*HCMSVH
Trigger: ATGGACAGACATACAATGCAACAGTCGTTGGTTTGA...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCCCTCTCCTTCATTATaGTACACTCCCACTTTGACT +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIPSPSL*YTPTLT
Trigger: AGTCAAAGTGGGAGTGTACAATAATGAAGGAGAGGG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGAATAGATTCTTTGGAGTaGTCTGTCCAGTATAAGACC +
Preference number: 5 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRIDSLE*SVQYKT
Trigger: GGTCTTATACTGGACAGACAACTCCAAAGAATCTAT...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp AGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGACCAATCATAGATTCTTaGGAGTTGTCTGTCCAGTAT +
Preference number: 5 (lower is better)
Translates to: RGWRMDLQNGLLSENSQRPIIDS*ELSVQY
Trigger: ATACTGGACAGACAACTCCAAAGAATCTATGATTGG...TCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTCAAGTTCCCTGTGTCTaGAGATACAAATCTTCGCTT +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIQVPCV*RYKSSL
Trigger: AAGCGAAGATTTGTATCTCAAGACACAGGGAACTTG...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGATTTCAAGGATAGCTaGGGATTTGCTGTACTTGAT +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHDFKDS*GFAVLD
Trigger: ATCAAGTACAGCAAATCCCAAGCTATCCTTGAAATC...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTGATTTCAAGGATAGCTaGGGATTTGCTGTACTTGAT +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIDFKDS*GFAVLD
Trigger: ATCAAGTACAGCAAATCCCAAGCTATCCTTGAAATC...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAAATTAGTTGACCCTTaGCAAGGTTTCTTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWKLVDP*QGFFLE
Trigger: TTCGAGGAAGAAACCTTGCAAAGGGTCAACTAATTT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGACAAGCGTTCTAGTGTaGTTTGTACTGTGCATAGAT +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWTSVLV*FVLCID
Trigger: ATCTATGCACAGTACAAACAACACTAGAACGCTTGT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp TGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGTTGTATGTCTGTCCATaGAGAATTTCAGGGACTGTA +
Preference number: 5 (lower is better)
Translates to: WRMDLQNGLLSENSQRSMLYVCP*RISGTV
Trigger: TACAGTCCCTGAAATTCTCAATGGACAGACATACAA...CATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTATAGATTCTTTGGAGTaGTCTGTCCAGTATAAGACC +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIIDSLE*SVQYKT
Trigger: GGTCTTATACTGGACAGACAACTCCAAAGAATCTAT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGCCAATCATAGATTCTTaGGAGTTGTCTGTCCAGTAT +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWPIIDS*ELSVQY
Trigger: ATACTGGACAGACAACTCCAAAGAATCTATGATTGG...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTAAATTAGTTGACCCTTaGCAAGGTTTCTTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIKLVDP*QGFFLE
Trigger: TTCGAGGAAGAAACCTTGCAAAGGGTCAACTAATTT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp ATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTGGAGAAAGGTATGTGTTTaGGATTTTCTGTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: MDLQNGLLSENSQRSMDWRKVCV*DFLFPF
Trigger: GAATGGGAACAGAAAATCCAAAACACATACCTTTCT...CCAATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATAGAAAGGTATGTGTTTaGGATTTTCTGTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: LENGFTEWFALRKFPKIHRKVCV*DFLFPF
Trigger: GAATGGGAACAGAAAATCCAAAACACATACCTTTCT...ATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp CTTGTGATAGAGGCTGGAGAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTAAGAACTCTTTTACTTaGTTTCAGGTTCTCTGTTCC +
Preference number: 5 (lower is better)
Translates to: LVIEAGEWIYRMVCSQKIKNSFT*FQVLCS
Trigger: GGAACAGAGAACCTGAAACAAAGTAAAAGAGTTCTT...AATTTTCTGAGAGCAAACCATTCTGTAAATCCATTCTCCAGCCTCTATCACAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTACAAGCGTTCTAGTGTaGTTTGTACTGTGCATAGAT +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWITSVLV*FVLCID
Trigger: ATCTATGCACAGTACAAACAACACTAGAACGCTTGT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS-3UTR CAA 90 bp GAATGGATTTACAGAATGGTTTGCTCTCAGAAAATTCCCAAAGATCCATGGATTAAGAACTCTTTTACTTaGTTTCAGGTTCTCTGTTCC +
Preference number: 5 (lower is better)
Translates to: EWIYRMVCSQKIPKDPWIKNSFT*FQVLCS
Trigger: GGAACAGAGAACCTGAAACAAAGTAAAAGAGTTCTT...AATCCATGGATCTTTGGGAATTTTCTGAGAGCAAACCATTCTGTAAATCCATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS CAA 90 bp GGTGCCCACAGGATTGGTGGCCAGACACTGGTATATGCCAATATCTaGATCTGTTCTGGGGCTGCTGATGGCCAAACTGCCTCCATCCAA +
Preference number: 6 (lower is better)
Translates to: GAHRIGGQTLVYANI*ICSGAADGQTASIQ
Trigger: TTGGATGGAGGCAGTTTGGCCATCAGCAGCCCCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp TTACATCCTCTGGGGGCCCTGGGGGACCTCTCACAATaGTATCAGCTACAGCAGACAAGCGTTCTAGTGTTG +
Preference number: 6 (lower is better)
Translates to: LHPLGALGDLSQ*YQLQQTSVLVL
Trigger: CAACACTAGAACGCTTGTCTGCTGTAGCTGATATCATTGTGAGAGGTCCCCCAGGGCCCCCAGAGGATGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp AGCCACCCTTTCTTTCATCCAGGCGGTTGTGCCTACTaGCCGAAACATGACGATATATCCAAACCCCTCTCC +
Preference number: 6 (lower is better)
Translates to: SHPFFHPGGCAY*PKHDDISKPLS
Trigger: GGAGAGGGGTTTGGATATATCGTCATGTTTCGGCCAGTAGGCACAACCGCCTGGATGAAAGAAAGGGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp GCCTCCCACGTAATGACAAGTTCCGATCTGCTTCCACCGCCTCCATaGATATTTCCTGGTGCCACATTGGGGACTGATGCTTTGGTTCTC +
Preference number: 6 (lower is better)
Translates to: ASHVMTSSDLLPPPP*IFPGATLGTDALVL
Trigger: GAGAACCAAAGCATCAGTCCCCAATGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAGCAGATCGGAACTTGTCATTACGTGGGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp CCGCCTCCATTGATATTTCCTGGTGCCACATTGGGGACTGATGCTTaGGTTCTCAGCAGCTCTGATGGTTTGCTTGGCTCTCCAATTCCA +
Preference number: 6 (lower is better)
Translates to: PPPLIFPGATLGTDA*VLSSSDGLLGSPIP
Trigger: TGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATGTGGCACCAGGAAATATCAATGGAGGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp TCCGATCTGCTTCCACCGCCTCCATTGATATTTCCTGGTGCCACATaGGGGACTGATGCTTTGGTTCTCAGCAGCTCTGATGGTTTGCTT +
Preference number: 6 (lower is better)
Translates to: SDLLPPPPLIFPGAT*GTDALVLSSSDGLL
Trigger: AAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAGCAGATCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp CCATCAGTGCGCAGCACTAAAGGCGTAGGTGGACCTTaGACACTTCTATGGGCCTCTTTGTTTGTGACAAAG +
Preference number: 6 (lower is better)
Translates to: PSVRSTKGVGGP*TLLWASLFVTK
Trigger: CTTTGTCACAAACAAAGAGGCCCATAGAAGTGTCCAAGGTCCACCTACGCCTTTAGTGCTGCGCACTGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp GGGCTGTTATTATCAGGACCTGGTCTCCAGCTGAGCTaGGAGGTCGTACTAGAGATGTGCTCCACTTTTACA +
Preference number: 6 (lower is better)
Translates to: GLLLSGPGLQLS*EVVLEMCSTFT
Trigger: TGTAAAAGTGGAGCACATCTCTAGTACGACCTCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAACAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp AGGATTGGTGGCCAGACACTGGTATATGCCAATATCTaGATCTGTTCTGGGGCTGCTGATGGCCAAACTGCC +
Preference number: 6 (lower is better)
Translates to: RIGGQTLVYANI*ICSGAADGQTA
Trigger: GGCAGTTTGGCCATCAGCAGCCCCAGAACAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp CTTCCACCGCCTCCATTGATATTTCCTGGTGCCACATaGGGGACTGATGCTTTGGTTCTCAGCAGCTCTGAT +
Preference number: 6 (lower is better)
Translates to: LPPPPLIFPGAT*GTDALVLSSSD
Trigger: ATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp GCCACATTGGGGACTGATGCTTTGGTTCTCAGCAGCTCTGATGGTTaGCTTGGCTCTCCAATTCCAATGTTGTTCCCAGCAACAACACGA +
Preference number: 6 (lower is better)
Translates to: ATLGTDALVLSSSDG*LGSPIPMLFPATTR
Trigger: TCGTGTTGTTGCTGGGAACAACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp AAATGTGGTGGTGGGCCACAGAGTAGTACCACTCCTTaGCCTTCTCGGACAGATACTGTGCTTCTGGTTTTG +
Preference number: 6 (lower is better)
Translates to: KCGGGPQSSTTP*PSRTDTVLLVL
Trigger: CAAAACCAGAAGCACAGTATCTGTCCGAGAAGGTCAAGGAGTGGTACTACTCTGTGGCCCACCACCACATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp GTAATGACAAGTTCCGATCTGCTTCCACCGCCTCCATaGATATTTCCTGGTGCCACATTGGGGACTGATGCT +
Preference number: 6 (lower is better)
Translates to: VMTSSDLLPPPP*IFPGATLGTDA
Trigger: AGCATCAGTCCCCAATGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAGCAGATCGGAACTTGTCATTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp ACCCAAGGACTCAAACCAACGACTGTTGCATTGTATGTCTGTCCATaGAGAATTTCAGGGACTGTAGCAACCGCTTGCCAGCCCACAGAA +
Preference number: 6 (lower is better)
Translates to: TQGLKPTTVALYVCP*RISGTVATACQPTE
Trigger: TTCTGTGGGCTGGCAAGCGGTTGCTACAGTCCCTGAAATTCTCAATGGACAGACATACAATGCAACAGTCGTTGGTTTGAGTCCTTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp CTTTCATCCAGGCGGTTGTGCCTACTGGCCGAAACATaGCGATATATCCAAACCCCTCTCCATTCTGTAGTT +
Preference number: 6 (lower is better)
Translates to: LSSRRLCLLAET*RYIQTPLHSVV
Trigger: AACTACAGAATGGAGAGGGGTTTGGATATATCGTCATGTTTCGGCCAGTAGGCACAACCGCCTGGATGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp CCCATTCTGGGGGAGCATAGAAAATTAGTTGACCCTTaGCAAGGTTTCTTCCTCGAAGGTTACCTGCGATGC +
Preference number: 6 (lower is better)
Translates to: PILGEHRKLVDP*QGFFLEGYLRC
Trigger: GCATCGCAGGTAACCTTCGAGGAAGAAACCTTGCAAAGGGTCAACTAATTTTCTATGCTCCCCCAGAATGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp TTGATATTTCCTGGTGCCACATTGGGGACTGATGCTTaGGTTCTCAGCAGCTCTGATGGTTTGCTTGGCTCT +
Preference number: 6 (lower is better)
Translates to: LIFPGATLGTDA*VLSSSDGLLGS
Trigger: AGAGCCAAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATGTGGCACCAGGAAATATCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp TCTCTCTTTCACGACGAGACCTCCACTGCTTTTCCCATTGCCAAATaGATTTGTAGCTACACAGGTGTAAGACCCAGCATCTGCTCTGGT +
Preference number: 6 (lower is better)
Translates to: SLFHDETSTAFPIAK*ICSYTGVRPSICSG
Trigger: ACCAGAGCAGATGCTGGGTCTTACACCTGTGTAGCTACAAATCAATTTGGCAATGGGAAAAGCAGTGGAGGTCTCGTCGTGAAAGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp CATTGGGGACTGATGCTTTGGTTCTCAGCAGCTCTGATGGTTTGCTaGGCTCTCCAATTCCAATGTTGTTCCCAGCAACAACACGAAATT +
Preference number: 6 (lower is better)
Translates to: HWGLMLWFSAALMVC*ALQFQCCSQQQHEI
Trigger: AATTTCGTGTTGTTGCTGGGAACAACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp AAGTACCAAACAAATAGAACTTCCATGGTGGGGTCATaGGACACTTGGCAGGGTAAGACGATGCTCTCTCCA +
Preference number: 6 (lower is better)
Translates to: KYQTNRTSMVGS*DTWQGKTMLSP
Trigger: TGGAGAGAGCATCGTCTTACCCTGCCAAGTGTCTCATGACCCCACCATGGAAGTTCTATTTGTTTGGTACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp TGGCTTTTCTACTCAGAATGGTGCCCACAGGATTGGTaGCCAGACACTGGTATATGCCAATATCTTGATCTG +
Preference number: 6 (lower is better)
Translates to: WLFYSEWCPQDW*PDTGICQYLDL
Trigger: CAGATCAAGATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp TGTTGGAACTTGGGGATTTCAAGGATAGCTTGGGATTaGCTGTACTTGATTTTCCCTGGCATCGGGCTTCCA +
Preference number: 6 (lower is better)
Translates to: CWNLGISRIAWD*LYLIFPGIGLP
Trigger: TGGAAGCCCGATGCCAGGGAAAATCAAGTACAGCAAATCCCAAGCTATCCTTGAAATCCCCAAGTTCCAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp CTCAAACCAACGACTGTTGCATTGTATGTCTGTCCATaGAGAATTTCAGGGACTGTAGCAACCGCTTGCCAG +
Preference number: 6 (lower is better)
Translates to: LKPTTVALYVCP*RISGTVATACQ
Trigger: CTGGCAAGCGGTTGCTACAGTCCCTGAAATTCTCAATGGACAGACATACAATGCAACAGTCGTTGGTTTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp CGAAATTCGTATTCCACCCAAGGACTCAAACCAACGACTGTTGCATaGTATGTCTGTCCATTGAGAATTTCAGGGACTGTAGCAACCGCT +
Preference number: 6 (lower is better)
Translates to: RNSYSTQGLKPTTVA*YVCPLRISGTVATA
Trigger: AGCGGTTGCTACAGTCCCTGAAATTCTCAATGGACAGACATACAATGCAACAGTCGTTGGTTTGAGTCCTTGGGTGGAATACGAATTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 72 bp TTGACCCTTTGCAAGGTTTCTTCCTCGAAGGTTACCTaGGATGCATTCATAGAAGCCTTCATCCTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: LTLCKVSSSKVT*DAFIEAFILLL
Trigger: CAACAAGAGGATGAAGGCTTCTATGAATGCATCGCAGGTAACCTTCGAGGAAGAAACCTTGCAAAGGGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp AGTAAAAATTTGAATGGGGCTGTTATTATCAGGACCTaGTCTCCAGCTGAGCTGGGAGGTCGTACTAGAGAT +
Preference number: 6 (lower is better)
Translates to: SKNLNGAVIIRT*SPAELGGRTRD
Trigger: ATCTCTAGTACGACCTCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAACAGCCCCATTCAAATTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp AGCTCTGATGGTTTGCTTGGCTCTCCAATTCCAATGTaGTTCCCAGCAACAACACGAAATTCGTATTCCACC +
Preference number: 6 (lower is better)
Translates to: SSDGLLGSPIPM*FPATTRNSYST
Trigger: GGTGGAATACGAATTTCGTGTTGTTGCTGGGAACAACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp GTGGACCTTGGACACTTCTATGGGCCTCTTTGTTTGTaGCAAAGCAAGTATAATTGCCCACATCAGATGGTT +
Preference number: 6 (lower is better)
Translates to: VDLGHFYGPLCL*QSKYNCPHQMV
Trigger: AACCATCTGATGTGGGCAATTATACTTGCTTTGTCACAAACAAAGAGGCCCATAGAAGTGTCCAAGGTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 72 bp CCAAACTGCCTCCATCCAACCTATAGTGATAAGTCATaGCGAAGTCAATATCTGTACCATTCTGTTTCCACC +
Preference number: 6 (lower is better)
Translates to: PNCLHPTYSDKS*RSQYLYHSVST
Trigger: GGTGGAAACAGAATGGTACAGATATTGACTTCGGCATGACTTATCACTATAGGTTGGATGGAGGCAGTTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089215.12
ENSMUST00000162872.2
CDS CCA 72 bp AAGGATAGCTTGGGATTTGCTGTACTTGATTTTCCCTaGCATCGGGCTTCCATCCAACCTTTTCCAACTAAT +
Preference number: 6 (lower is better)
Translates to: KDSLGFAVLDFP*HRASIQPFPTN
Trigger: ATTAGTTGGAAAAGGTTGGATGGAAGCCCGATGCCAGGGAAAATCAAGTACAGCAAATCCCAAGCTATCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp TTTGTTTTCTGCAGCACACTGGTAGATCCCAGAGTCTaGAATGTTCAGCATGGTGATGATAAGAGTCCCATT +
Preference number: 6 (lower is better)
Translates to: FVFCSTLVDPRV*NVQHGDDKSPI
Trigger: AATGGGACTCTTATCATCACCATGCTGAACATTTCAGACTCTGGGATCTACCAGTGTGCTGCAGAAAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp GATGCTCTCTCCAACTGTAACATCCATTTTAGATGGTaGTACTGTAATGATCGTTCTCTCTTTCACGACGAG +
Preference number: 6 (lower is better)
Translates to: DALSNCNIHFRW*YCNDRSLFHDE
Trigger: CTCGTCGTGAAAGAGAGAACGATCATTACAGTACCACCATCTAAAATGGATGTTACAGTTGGAGAGAGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CCA 72 bp GACGATGCTCTCTCCAACTGTAACATCCATTTTAGATaGTGGTACTGTAATGATCGTTCTCTCTTTCACGAC +
Preference number: 6 (lower is better)
Translates to: DDALSNCNIHFR*WYCNDRSLFHD
Trigger: GTCGTGAAAGAGAGAACGATCATTACAGTACCACCATCTAAAATGGATGTTACAGTTGGAGAGAGCATCGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp TATTCCACCCAAGGACTCAAACCAACGACTGTTGCATaGTATGTCTGTCCATTGAGAATTTCAGGGACTGTA +
Preference number: 6 (lower is better)
Translates to: YSTQGLKPTTVA*YVCPLRISGTV
Trigger: TACAGTCCCTGAAATTCTCAATGGACAGACATACAATGCAACAGTCGTTGGTTTGAGTCCTTGGGTGGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS TCA 72 bp GAGTCCCATTTTCAATCTGAATTCTTTCTTCTGTGTTaGGACGTTGACCATTCTTTAGCCACGTGTACGAAG +
Preference number: 6 (lower is better)
Translates to: ESHFQSEFFLLC*DVDHSLATCTK
Trigger: CTTCGTACACGTGGCTAAAGAATGGTCAACGTCTCAACACAGAAGAAAGAATTCAGATTGAAAATGGGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS GCA 72 bp GTAGTACCACTCCTTGACCTTCTCGGACAGATACTGTaGTTCTGGTTTTGGTTTCAAAGTCTTCAATATATG +
Preference number: 6 (lower is better)
Translates to: VVPLLDLLGQIL*FWFWFQSLQYM
Trigger: CATATATTGAAGACTTTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAGAAGGTCAAGGAGTGGTACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 72 bp TTGGTTTCAAAGTCTTCAATATATGCAAACTGTAGCTaGGCTTTTCTACTCAGAATGGTGCCCACAGGATTG +
Preference number: 6 (lower is better)
Translates to: LVSKSSIYANCS*AFLLRMVPTGL
Trigger: CAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCAAGCTACAGTTTGCATATATTGAAGACTTTGAAACCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2
CDS CAA 90 bp AATAGTCTTCTTCAAATGGAACCAGGAGTTCAGCAGATGTATTATTaGTTTCCAAAATATGAGTTTTACTCTGTCGGTTCTGCCGATAGA +
Preference number: 6 (lower is better)
Translates to: NSLLQMEPGVQQMYY*FPKYEFYSVGSADR
Trigger: TCTATCGGCAGAACCGACAGAGTAAAACTCATATTTTGGAAACAAATAATACATCTGCTGAACTCCTGGTTCCATTTGAAGAAGACTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089215.12
ENSMUST00000161070.8
ENSMUST00000162872.2