RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNTN4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064293

Ensembl transcript IDs: ENSMUST00000079416.6, ENSMUST00000089208.9, ENSMUST00000113258.8, ENSMUST00000113260.8, ENSMUST00000113261.9, ENSMUST00000113264.9

Found 639 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGCAGACAGAATGGAGAAGAGCAGTGGTGTTCTGGAGTAGCAGGTTaGTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAG +
Preference number: 1 (lower is better)
Translates to: RRQNGEEQWCSGVAG*SEKCWANGFSEEGE
Trigger: CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGAACACCACTGCTCTTCTCCATTCTGTCTGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR TCA 90 bp GTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTAGTTCCTaGAACCATCTCAAATTGTGTTCAACAAGAAAATTCACAACAGGG +
Preference number: 1 (lower is better)
Translates to: VPLGLGSLAFGMCSS*NHLKLCSTRKFTTG
Trigger: CCCTGTTGTGAATTTTCTTGTTGAACACAATTTGAGATGGTTTCAGGAACTACACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR CCA 90 bp TTTGTTACTGTTGTGACTCATAATGTAAATATCTGTCTTTTCCAATaGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGAT +
Preference number: 1 (lower is better)
Translates to: FVTVVTHNVNICLFQ*PLVTTVKVSLHLQD
Trigger: ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGTCACAACAGTAACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR TCA 90 bp ATAAAGAGGATTAAGAAGTTGATTACATCTCAGAACCAGAAAGGTTaGGCTTCTCCTGGCCTGGTTTGTGTTCATTATGATCCTTTAAGG +
Preference number: 1 (lower is better)
Translates to: IKRIKKLITSQNQKG*ASPGLVCVHYDPLR
Trigger: CCTTAAAGGATCATAATGAACACAAACCAGGCCAGGAGAAGCTCAACCTTTCTGGTTCTGAGATGTAATCAACTTCTTAATCCTCTTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR TCA 90 bp TTATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTaGCACTGGATCCTTGTAAAACTGTACAAGTCATTTGTAATTCAT +
Preference number: 1 (lower is better)
Translates to: LYTAALSYRPSLQLF*HWILVKLYKSFVIH
Trigger: ATGAATTACAAATGACTTGTACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTCTGGAGTAGCAGGTTaGTCAGAGAAGTGCTGGGCT +
Preference number: 2 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYSGVAG*SEKCWA
Trigger: AGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATGTCGCAGACAGAATaGAGAAGAGCAGTGGTGTTC +
Preference number: 2 (lower is better)
Translates to: HVVATQGKDRTNCAHLELMSQTE*RRAVVF
Trigger: GAACACCACTGCTCTTCTCCATTCTGTCTGCGACAT...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCTGCTCAGAGAAGTGCTaGGCTAATGGCTTCTCAGAA +
Preference number: 2 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPCSEKC*ANGFSE
Trigger: TTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCA...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAAATGGAGAAGAGCAGTaGTGTTCTGGAGTAGCAGGT +
Preference number: 2 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLNGEEQ*CSGVAG
Trigger: ACCTGCTACTCCAGAACACCACTGCTCTTCTCCATT...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR GCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAGGTTGCTCAGAGAAGTaGTGGGCTAATGGCTTCTCA +
Preference number: 2 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREGCSEK*WANGFS
Trigger: TGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACC...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR GCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTGAGAATGAGAGCACATaGAGAAGATCACAGAGAAAC +
Preference number: 2 (lower is better)
Translates to: HVVATQGKDRTNCAHLELENEST*RRSQRN
Trigger: GTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTC...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACGATCACAGAGAAACTTaGACAACACCCAATGATGTC +
Preference number: 2 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYDHRET*TTPNDV
Trigger: GACATCATTGGGTGTTGTCCAAGTTTCTCTGTGATC...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR GCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAGAGAATGAGAGCACATaGAGAAGATCACAGAGAAAC +
Preference number: 2 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLENEST*RRSQRN
Trigger: GTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTC...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAATGTCGCAGACAGAATaGAGAAGAGCAGTGGTGTTC +
Preference number: 2 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRMSQTE*RRAVVF
Trigger: GAACACCACTGCTCTTCTCCATTCTGTCTGCGACAT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR CAA 90 bp CAAATAAAGTCTTACCAGATGATGCTAAGTTCAGGGATGGGAGAATaGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATG +
Preference number: 2 (lower is better)
Translates to: QIKSYQMMLSSGMGE*HKVPLGLGSLAFGM
Trigger: CATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCCATCCCTGAACTTAGCATCATCTGGTAAGACTTTATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAGTCTCCAGCTGTTTTaGCACTGGATCCTTGTAAAA +
Preference number: 2 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSLQLF*HWILVK
Trigger: TTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGAAAGAAGAAAAAGGTaGCTGTGTGTTTTCATGTGC +
Preference number: 2 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGERRKR*LCVFMC
Trigger: GCACATGAAAACACACAGTCACCTTTTTCTTCTTTC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR CAA 90 bp ACTGTTGTGACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTaGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAAC +
Preference number: 2 (lower is better)
Translates to: TVVTHNVNICLFQWP*VTTVKVSLHLQDEN
Trigger: GTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGTCACAACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR CCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACATCTGTCTTTTCCAATaGCCTTTGGTGACCACTGTG +
Preference number: 2 (lower is better)
Translates to: EERVDFGSIMLFCALPLDICLFQ*PLVTTV
Trigger: CACAGTGGTCACCAAAGGCCATTGGAAAAGACAGAT...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGCACAAGGTACCTCTTaGGCTGGGAAGTTTAGCTTT +
Preference number: 2 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYAQGTS*AGKFSF
Trigger: AAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR TCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTGTATTGGACGATGCTaGAATAAGATAGCCTTTCAA +
Preference number: 2 (lower is better)
Translates to: PFITWRSHIHISEYPGQLCIGRC*NKIAFQ
Trigger: TTGAAAGGCTATCTTATTTCAGCATCGTCCAATACA...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
3UTR-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACACCTTCCAAATGCTGTaGCCATTTAATATGTTGTGG +
Preference number: 2 (lower is better)
Translates to: EERVDFGSIMLFCALPLDTFQML*PFNMLW
Trigger: CCACAACATATTAAATGGTCACAGCATTTGGAAGGT...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR TCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCTATACATATTAATATaGATGCTGCCACGTCTGGTG +
Preference number: 2 (lower is better)
Translates to: LLLGEAISISLNTQGSFLLYILI*MLPRLV
Trigger: CACCAGACGTGGCAGCATTCATATTAATATGTATAG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
3UTR-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACAGAGGATTAAGAAGTTaGTTACATCTCAGAACCAGA +
Preference number: 2 (lower is better)
Translates to: EERVDFGSIMLFCALPLDRGLRS*LHLRTR
Trigger: TCTGGTTCTGAGATGTAATCAACTTCTTAATCCTCT...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR GCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTTGTGTGGTTTGTGTTaGCCAGAGCATTTTATAGCA +
Preference number: 2 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGLCGLC*PEHFIA
Trigger: TGCTATAAAATGCTCTGGGCAACACAAACCACACAA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR CCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATGAGCTTCTCCTGGCCTaGTTTGTGTTCATTATGATC +
Preference number: 2 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDELLLA*FVFIMI
Trigger: GATCATAATGAACACAAACCAGGCCAGGAGAAGCTC...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR CAA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTTCTGGAGTAGCAGGTaGCTCAGAGAAGTGCTGGGC +
Preference number: 3 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYFWSSR*LREVLG
Trigger: GCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGAA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR GCA 72 bp AATGGAGAAGAGCAGTGGTGTTCTGGAGTAGCAGGTTaGTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAA +
Preference number: 3 (lower is better)
Translates to: NGEEQWCSGVAG*SEKCWANGFSE
Trigger: TTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGAACACCACTGCTCTTCTCCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CAA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTGCTTTGAGCTGGGTGTaGAAGGAAGTGGTGGATTTA +
Preference number: 3 (lower is better)
Translates to: HVVATQGKDRTNCAHLELALSWV*KEVVDL
Trigger: TAAATCCACCACTTCCTTCAACACCCAGCTCAAAGC...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR-3UTR CAA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAATTCTGGAGTAGCAGGTaGCTCAGAGAAGTGCTGGGC +
Preference number: 3 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREFWSSR*LREVLG
Trigger: GCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGAA...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR CCA 72 bp AAACTTGGACAACACCCAATGATGTCGCAGACAGAATaGAGAAGAGCAGTGGTGTTCTGGAGTAGCAGGTTG +
Preference number: 3 (lower is better)
Translates to: KLGQHPMMSQTE*RRAVVFWSSRL
Trigger: CAACCTGCTACTCCAGAACACCACTGCTCTTCTCCATTCTGTCTGCGACATCATTGGGTGTTGTCCAAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR TCA 72 bp CTGTGCCCACTTGGAGCTTACAATCTAGTGGGAGAATaGGAGCACATGCAGAAGATCACAGAGAAACTTGGA +
Preference number: 3 (lower is better)
Translates to: LCPLGAYNLVGE*EHMQKITEKLG
Trigger: TCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGTGGGCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR CCA 72 bp AGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTaGACAACACCCAATGATGTCGCAGACAGAATGGAG +
Preference number: 3 (lower is better)
Translates to: RMRAHAEDHRET*TTPNDVADRME
Trigger: CTCCATTCTGTCTGCGACATCATTGGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
3UTR TCA 72 bp GCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTaGCACTGGATCCTTGTAAAACTGTACAAGTCATTT +
Preference number: 3 (lower is better)
Translates to: AALSYRPSLQLF*HWILVKLYKSF
Trigger: AAATGACTTGTACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR TCA 72 bp CAAGGTTGGCTGGGTGACTTAAGCAAAGCACACAGGTaGTCAAAACCCTTTATTACTTGGAGAAGCCATATC +
Preference number: 3 (lower is better)
Translates to: QGWLGDLSKAHR*SKPFITWRSHI
Trigger: GATATGGCTTCTCCAAGTAATAAAGGGTTTTGATCACCTGTGTGCTTTGCTTAAGTCACCCAGCCAACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
3UTR-3UTR CAA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACACTGTGAAAGTGTCATaGCACCTCCAGGATGAGAAC +
Preference number: 3 (lower is better)
Translates to: EERVDFGSIMLFCALPLDTVKVS*HLQDEN
Trigger: GTTCTCATCCTGGAGGTGCAATGACACTTTCACAGT...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAGATGTCTTCAGTGCATaGCAGAGTTTCCAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVDVFSA*QSFQRN
Trigger: GTTTCTTTGGAAACTCTGCAATGCACTGAAGACATC...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATTGTGTGGTTTGTGTaGCCCAGAGCATTTTATAGC +
Preference number: 3 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVIVWFV*PRAFYS
Trigger: GCTATAAAATGCTCTGGGCAACACAAACCACACAAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR TCA 72 bp TCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTGTaGCCATTTAATATGTTGTGGTGCTCCCCAACCATA +
Preference number: 3 (lower is better)
Translates to: SLRQRFSTFQML*PFNMLWCSPTI
Trigger: TATGGTTGGGGAGCACCACAACATATTAAATGGTCACAGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR TCA 72 bp CATTTTATTTCCTTCAAACTGACAAGGTTGGCTGGGTaGCTTAAGCAAAGCACACAGGTGATCAAAACCCTT +
Preference number: 3 (lower is better)
Translates to: HFISFKLTRLAG*LKQSTQVIKTL
Trigger: AAGGGTTTTGATCACCTGTGTGCTTTGCTTAAGTCACCCAGCCAACCTTGTCAGTTTGAAGGAAATAAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
3UTR-3UTR CAA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGAAACTGCCAGTGTCGTaGCTTAAACAATGTTTGCTA +
Preference number: 3 (lower is better)
Translates to: LLLGEAISISLNTQGSFLKLPVS*LKQCLL
Trigger: TAGCAAACATTGTTTAAGCAACGACACTGGCAGTTT...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
3UTR TCA 72 bp TTAACCATTCAAGGGATAATTTATATACAGCAGCCTTaGGTTACAGACCCAGTCTCCAGCTGTTTTGACACT +
Preference number: 3 (lower is better)
Translates to: LTIQGIIYIQQP*VTDPVSSCFDT
Trigger: AGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATATAAATTATCCCTTGAATGGTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR TCA 72 bp GGGCTGGGAAGTTTAGCTTTTGGGATGTGTAGTTCCTaGAACCATCTCAAATTGTGTTCAACAAGAAAATTC +
Preference number: 3 (lower is better)
Translates to: GLGSLAFGMCSS*NHLKLCSTRKF
Trigger: GAATTTTCTTGTTGAACACAATTTGAGATGGTTTCAGGAACTACACATCCCAAAAGCTAAACTTCCCAGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR TCA 72 bp ATTAAGAAGTTGATTACATCTCAGAACCAGAAAGGTTaGGCTTCTCCTGGCCTGGTTTGTGTTCATTATGAT +
Preference number: 3 (lower is better)
Translates to: IKKLITSQNQKG*ASPGLVCVHYD
Trigger: ATCATAATGAACACAAACCAGGCCAGGAGAAGCTCAACCTTTCTGGTTCTGAGATGTAATCAACTTCTTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
3UTR TCA 72 bp AGCAAGTTGAAAGGCTATGTTATGTGTAAGCAAAAATaGCAAATTACAGGCAATCGTGAGCTCTCCAAGAAA +
Preference number: 3 (lower is better)
Translates to: SKLKGYVMCKQK*QITGNRELSKK
Trigger: TTTCTTGGAGAGCTCACGATTGCCTGTAATTTGTCATTTTTGCTTACACATAACATAGCCTTTCAACTTGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVCPPFL*GPAGFP
Trigger: GGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYCPPFL*GPAGFP
Trigger: GGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTCAGCTCTCCAGAATaGGGTGGCGGGCCGCACAGA +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGELSSPE*GGGPHR
Trigger: TCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLCPPFL*GPAGFP
Trigger: GGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCCAGCGTGGTGGGACTaGAAGGGCCTTCCCCTTTGT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVPAWWD*KGLPLC
Trigger: ACAAAGGGGAAGGCCCTTTCAGTCCCACCACGCTGG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCCTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPLSRMG*RAAQKD
Trigger: GTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAG...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGATCTGGAACTGTATTaGCTGCTTGCCAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGDLELY*LLASPR
Trigger: CCGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATC...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGAGGGGGTTGGCTTGGTaGTGGCTTTCTGGTCGTGAC +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVRGLAW*WLSGRD
Trigger: GTCACGACCAGAAAGCCACCACCAAGCCAACCCCCT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEERRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCCAGCGTGGTGGGACTaGAAGGGCCTTCCCCTTTGT +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGPAWWD*KGLPLC
Trigger: ACAAAGGGGAAGGCCCTTTCAGTCCCACCACGCTGG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPLSRMG*RAAQKD
Trigger: GTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAG...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTCTCAGCTCTCCAGAATaGGGTGGCGGGCCGCACAGA +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLLSSPE*GGGPHR
Trigger: TCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAG...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGACTCAGCTCTCCAGAATaGGGTGGCGGGCCGCACAGA +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRLSSPE*GGGPHR
Trigger: TCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAG...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGTGGTTGTCAGGTCCTaGTCTCCAAGAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGVVVRS*SPRKLS
Trigger: GCTCAGCTTTCTTGGAGACCAGGACCTGACAACCAC...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTCTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPRRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGESHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEQTHHS*CECLPV
Trigger: GACGGGAAGACATTCACAGCAACTGTGGTGGGTTTG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTCTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGLAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGAGCCTCAGGAGGACCTaGAGGACCTCTTACAATCAG +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVSLRRT*RTSYNQ
Trigger: CTGATTGTAAGAGGTCCTCCAGGTCCTCCTGAGGCT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTAGCCTCAGGAGGACCTaGAGGACCTCTTACAATCAG +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFSLRRT*RTSYNQ
Trigger: CTGATTGTAAGAGGTCCTCCAGGTCCTCCTGAGGCT...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACGTGGTTGTCAGGTCCTaGTCTCCAAGAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYVVVRS*SPRKLS
Trigger: GCTCAGCTTTCTTGGAGACCAGGACCTGACAACCAC...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAATGGTGATGGGGCTGTaGTTGTCAGGTCCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLMVMGL*LSGPGL
Trigger: GAGACCAGGACCTGACAACCACAGCCCCATCACCAT...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCCTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGRRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVRFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEERFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCATCAAATCACCAGCTaGATCCTGCCCTCCAACTCT +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYHQITS*ILPSNS
Trigger: AGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATG...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCAGTGGTGTCTGTaGTTTCATCTATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGEQWCL*FHLWSQ
Trigger: CTGTGACCATAGATGAAATCACAGACACCACTGCTC...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACGGTCTCCAAGAAAGCTaGGCAGTGGTGTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYGLQES*AVVSVI
Trigger: AATCACAGACACCACTGCTCAGCTTTCTTGGAGACC...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGATCTGGAACTGTATTaGCTGCTTGCCAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGDLELY*LLASPR
Trigger: CCGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYCPPFL*GPAGFP
Trigger: GGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATCTGGAGGCATCAGCTaGAGCCAGCACGGTCAGCAT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSGGIS*SQHGQH
Trigger: ATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCAGA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGGGTCCTGTCCCAGCTaGGTTATACGCCTTGACAGA +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDGSCPS*VIRLDR
Trigger: TCTGTCAAGGCGTATAACTCAGCTGGGACAGGACCC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTCCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCTCACCAGCTGAATCCTaGCCTCCAACTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCSPAES*PPTLSK
Trigger: CTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGA...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAACTGTATTGACTGCTTaGCAGCCCACGGAGAATGGA +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEETVLTA*QPTENG
Trigger: TCCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTGGAACTGTATTGACTaGTTGCCAGCCCACGGAGAA +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELWNCID*LPAHGE
Trigger: TTCTCCGTGGGCTGGCAAGCAGTCAATACAGTTCCA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAATGGAACTGTATTGACTaGTTGCCAGCCCACGGAGAA +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEWNCID*LPAHGE
Trigger: TTCTCCGTGGGCTGGCAAGCAGTCAATACAGTTCCA...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYQTHHS*CECLPV
Trigger: GACGGGAAGACATTCACAGCAACTGTGGTGGGTTTG...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACCTCAGCTCTCCAGAATaGGGTGGCGGGCCGCACAGA +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDLSSPE*GGGPHR
Trigger: TCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAG...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATAGCCTCAGGAGGACCTaGAGGACCTCTTACAATCAG +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDSLRRT*RTSYNQ
Trigger: CTGATTGTAAGAGGTCCTCCAGGTCCTCCTGAGGCT...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTCTGCAAGGCACAACATaGATGATTGCAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFLQGTT*MIAALA
Trigger: TGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAG...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELTMSRE*SCVTWH
Trigger: ATGCCAGGTAACACATGATCACTCCCTGGACATTGT...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEETMSRE*SCVTWH
Trigger: ATGCCAGGTAACACATGATCACTCCCTGGACATTGT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACATCAAATCACCAGCTaGATCCTGCCCTCCAACTCT +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLHQITS*ILPSNS
Trigger: AGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATG...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGATCTGGAACTGTATTaGCTGCTTGCCAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRDLELY*LLASPR
Trigger: CCGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATC...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAATGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKCPPFL*GPAGFP
Trigger: GGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACA...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAATCACCAGCTGAATCCTaGCCTCCAACTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEESPAES*PPTLSK
Trigger: CTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGA...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGG +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGTYFPA*FSWMFR
Trigger: CCGAAACATCCAACTGAAGCATGCTGGGAAGTATGT...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTACGTGACATTGACTGTTaGACTGGAGGGTCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVRDIDC*TGGSCP
Trigger: GGGACAGGACCCTCCAGTGCAACAGTCAATGTCACG...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTTTGGGATTCGGATTTaGTCACTGCTGCTGCCATCT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVFGIRI*SLLLPS
Trigger: AGATGGCAGCAGCAGTGAGCAAATCCGAATCCCAAA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGLSRMG*RAAQKD
Trigger: GTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCTCAGCTCTCCAGAATaGGGTGGCGGGCCGCACAGA +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGLSSPE*GGGPHR
Trigger: TCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGESWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATCTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDLAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGTGGTTGTCAGGTCCTaGTCTCCAAGAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDVVVRS*SPRKLS
Trigger: GCTCAGCTTTCTTGGAGACCAGGACCTGACAACCAC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTATGGTGATGGGGCTGTaGTTGTCAGGTCCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPMVMGL*LSGPGL
Trigger: GAGACCAGGACCTGACAACCACAGCCCCATCACCAT...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACATGGTGATGGGGCTGTaGTTGTCAGGTCCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHMVMGL*LSGPGL
Trigger: GAGACCAGGACCTGACAACCACAGCCCCATCACCAT...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGATGTTTCCAGGGGGTTaGCTTGGTGGTGGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGMFPGG*LGGGFL
Trigger: CAGAAAGCCACCACCAAGCCAACCCCCTGGAAACAT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCATCAAATCACCAGCTaGATCCTGCCCTCCAACTCT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDHQITS*ILPSNS
Trigger: AGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGGTCTCCAAGAAAGCTaGGCAGTGGTGTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGGLQES*AVVSVI
Trigger: AATCACAGACACCACTGCTCAGCTTTCTTGGAGACC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGCACACTCTCATTCCTaGACACGTATCTGGAGGCAT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDAHSHS*TRIWRH
Trigger: ATGCCTCCAGATACGTGTTCAGGAATGAGAGTGTGC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCCGATGAATTCCATATaGTGTTTCCAGGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGPMNSI*CFQGVG
Trigger: GCCAACCCCCTGGAAACATCATATGGAATTCATCGG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGG +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELTYFPA*FSWMFR
Trigger: CCGAAACATCCAACTGAAGCATGCTGGGAAGTATGT...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCACTTGTTTGGACCATaGAGACATACTTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYHLFGP*RHTSQH
Trigger: ATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTG...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAACACTTGTTTGGACCATaGAGACATACTTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEHLFGP*RHTSQH
Trigger: ATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTG...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTGGAACTGTATTGACTaGTTGCCAGCCCACGGAGAA +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDWNCID*LPAHGE
Trigger: TTCTCCGTGGGCTGGCAAGCAGTCAATACAGTTCCA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGCCAATCACATTAGCTaGAACAGTGCGGAATTCATA +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEANHIS*NSAEFI
Trigger: TATGAATTCCGCACTGTTGCAGCTAATGTGATTGGC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGSRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGLAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDLAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCCATTCCCAGTACTGCTaGCAGTTCCAAAATGGTTCG +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPHSQYC*QFQNGS
Trigger: CGAACCATTTTGGAACTGCCAGCAGTACTGGGAATG...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAAGCCTCAGGAGGACCTaGAGGACCTCTTACAATCAG +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRESLRRT*RTSYNQ
Trigger: CTGATTGTAAGAGGTCCTCCAGGTCCTCCTGAGGCT...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAGGCAAAGATACTGGCTaGTGGCTTGGTGGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVGKDTG*WLGGFF
Trigger: GAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCC...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATCCTGGCAAAGATACTaGCTGGTGGCTTGGTGGGTT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSWQRY*LVAWWV
Trigger: AACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATGTTTCCAGGGGGTTaGCTTGGTGGTGGCTTTCTG +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVMFPGG*LGGGFL
Trigger: CAGAAAGCCACCACCAAGCCAACCCCCTGGAAACAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCTGCAAGGCACAACATaGATGATTGCAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDLQGTT*MIAALA
Trigger: TGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCFYWGY*STSCRQ
Trigger: TTGACGGCAGCTTGTTGATCAATAACCCCAATAAAA...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLRRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNARFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRRFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVRFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTCAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRESHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGAGCAGTGGTGTCTGTaGTTTCATCTATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGEQWCL*FHLWSQ
Trigger: CTGTGACCATAGATGAAATCACAGACACCACTGCTC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTGGTCTCCAAGAAAGCTaGGCAGTGGTGTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPGLQES*AVVSVI
Trigger: AATCACAGACACCACTGCTCAGCTTTCTTGGAGACC...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAGGTCTCCAAGAAAGCTaGGCAGTGGTGTCTGTGATT +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREGLQES*AVVSVI
Trigger: AATCACAGACACCACTGCTCAGCTTTCTTGGAGACC...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACGATCTGGAACTGTATTaGCTGCTTGCCAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDDLELY*LLASPR
Trigger: CCGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATC...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTCTGGAGGCATCAGCTaGAGCCAGCACGGTCAGCAT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYSGGIS*SQHGQH
Trigger: ATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCAGA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCTGAGTTATACGCCTTaGCAGATAAGTGATACAGAG +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVLSYTP*QISDTE
Trigger: CTCTGTATCACTTATCTGTCAAGGCGTATAACTCAG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTATTGTACTGATGGCTaGCAGCGTACACGCATTGGA +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGYCTDG*QRTRIG
Trigger: TCCAATGCGTGTACGCTGTCAGCCATCAGTACAATA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTCACAACATGAATGATTaGAGCACTAGCAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELHNMND*STSSSH
Trigger: ATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTG...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATTCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCTCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTCACCAGCTGAATCCTaGCCTCCAACTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDSPAES*PPTLSK
Trigger: CTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTCACCAGCTGAATCCTaGCCTCCAACTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSPAES*PPTLSK
Trigger: CTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATCACTTGTTTGGACCATaGAGACATACTTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDHLFGP*RHTSQH
Trigger: ATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTG...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAACTGTATTGACTGCTTaGCAGCCCACGGAGAATGGA +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRTVLTA*QPTENG
Trigger: TCCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGGCCAATCACATTAGCTaGAACAGTGCGGAATTCATA +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVANHIS*NSAEFI
Trigger: TATGAATTCCGCACTGTTGCAGCTAATGTGATTGGC...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTTCTTGAACAAAAACTaGGCCATGCAGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELFLNKN*AMQCVV
Trigger: GACTACACACTGCATGGCCCAGTTTTTGTTCAAGAA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACACTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTLSRMG*RAAQKD
Trigger: GTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAG...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATCTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHLSRMG*RAAQKD
Trigger: GTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAG...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTGGCTTTCCTTGCTATTaGCTTGCCATCAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLGFPCY*LAISSS
Trigger: CGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCC...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAGGCTTTCCTTGCTATTaGCTTGCCATCAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTGFPCY*LAISSS
Trigger: CGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCC...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNAGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAACTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRELAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCATTCCCAGTACTGCTaGCAGTTCCAAAATGGTTCG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGHSQYC*QFQNGS
Trigger: CGAACCATTTTGGAACTGCCAGCAGTACTGGGAATG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAATGTGTTACCTGGCATaGAAGAACAATGCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEMCYLA*KNNAFS
Trigger: GGAGAAAGCATTGTTCTTCCATGCCAGGTAACACAT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGATGTGTTACCTGGCATaGAAGAACAATGCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVMCYLA*KNNAFS
Trigger: GGAGAAAGCATTGTTCTTCCATGCCAGGTAACACAT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCCAGCATGCTTCAGTTaGATGTTTCGGATCATCAAA +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVPACFS*MFRIIK
Trigger: TTTGATGATCCGAAACATCCAACTGAAGCATGCTGG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAACCAGCATGCTTCAGTTaGATGTTTCGGATCATCAAA +
Preference number: 4 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEPACFS*MFRIIK
Trigger: TTTGATGATCCGAAACATCCAACTGAAGCATGCTGG...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTTTGTCTACACTTGTTTaGACCATGCAGACATACTTC +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGLSTLV*TMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAA...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCTCAAAGGGAGAGAATaGACGCACACTCTCATTCCT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDLKGRE*THTLIP
Trigger: AGGAATGAGAGTGTGCGTCCATTCTCTCCCTTTGAG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAAAGATACTGGCTGGTaGCTTGGTGGGTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGKDTGW*LGGFFF
Trigger: GAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGAGGGGGTTGGCTTGGTaGTGGCTTTCTGGTCGTGAC +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGRGLAW*WLSGRD
Trigger: GTCACGACCAGAAAGCCACCACCAAGCCAACCCCCT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR CAA 72 bp TCTTACCAGATGATGCTAAGTTCAGGGATGGGAGAATaGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCT +
Preference number: 4 (lower is better)
Translates to: SYQMMLSSGMGE*HKVPLGLGSLA
Trigger: AGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCCATCCCTGAACTTAGCATCATCTGGTAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCTGCAAGGCACAACATaGATGATTGCAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPLQGTT*MIAALA
Trigger: TGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAG...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAACTGCAAGGCACAACATaGATGATTGCAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRELQGTT*MIAALA
Trigger: TGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAG...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGNPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYRRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTTCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNATMSRE*SCVTWH
Trigger: ATGCCAGGTAACACATGATCACTCCCTGGACATTGT...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACGAGCAGTGGTGTCTGTaGTTTCATCTATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHEQWCL*FHLWSQ
Trigger: CTGTGACCATAGATGAAATCACAGACACCACTGCTC...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGATCTGGAACTGTATTaGCTGCTTGCCAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYDLELY*LLASPR
Trigger: CCGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGCCTTGACAGATAAGTaGTACAGAGCACTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGALTDK*YRALPF
Trigger: GAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGGGTCCTGTCCCAGCTaGGTTATACGCCTTGACAGA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKGSCPS*VIRLDR
Trigger: TCTGTCAAGGCGTATAACTCAGCTGGGACAGGACCC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACATCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTCCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNAPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTACCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTCACCAGCTGAATCCTaGCCTCCAACTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHSPAES*PPTLSK
Trigger: CTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGA...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCGTGACATTGACTGTTaGACTGGAGGGTCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKRDIDC*TGGSCP
Trigger: GGGACAGGACCCTCCAGTGCAACAGTCAATGTCACG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTCTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTCATTCCCAGTACTGCTaGCAGTTCCAAAATGGTTCG +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNAHSQYC*QFQNGS
Trigger: CGAACCATTTTGGAACTGCCAGCAGTACTGGGAATG...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGACATTCCCAGTACTGCTaGCAGTTCCAAAATGGTTCG +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRHSQYC*QFQNGS
Trigger: CGAACCATTTTGGAACTGCCAGCAGTACTGGGAATG...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTAACCATCACCTTTGTTaGGTCTTTCACAATCACATT +
Preference number: 4 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGNHHLC*VFHNHI
Trigger: AATGTGATTGTGAAAGACCCAACAAAGGTGATGGTT...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGATGGTGATGGGGCTGTaGTTGTCAGGTCCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGMVMGL*LSGPGL
Trigger: GAGACCAGGACCTGACAACCACAGCCCCATCACCAT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACATGGTGATGGGGCTGTaGTTGTCAGGTCCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYMVMGL*LSGPGL
Trigger: GAGACCAGGACCTGACAACCACAGCCCCATCACCAT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGAATGGAGTCCTAGCTTaGATAACATACATGGTGATG +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVNGVLA*ITYMVM
Trigger: CATCACCATGTATGTTATCCAAGCTAGGACTCCATT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAAACTTCGATATCCGTaGCAGAAAGACTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGKLRYP*QKDSWQ
Trigger: TTGCCAGGAGTCTTTCTGCCACGGATATCGAAGTTT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGCTGCAAGGCACAACATaGATGATTGCAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLLQGTT*MIAALA
Trigger: TGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAG...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAAGAAGGACCATTCCCTaGCCTCGACGGACTGACACA +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKRRTIP*PRRTDT
Trigger: TGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGAGATTCCCAGTCTCTTaGGAAACGAAGCGGCGGTTA +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLRFPVS*ETKRRL
Trigger: TAACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCT...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDSHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACCATCAAATCACCAGCTaGATCCTGCCCTCCAACTCT +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDHQITS*ILPSNS
Trigger: AGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATG...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTTCCTTTCAAGTTGGTaGTTTTTGTGGATGTCTGAT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVFLSSW*FLWMSD
Trigger: ATCAGACATCCACAAAAATCACCAACTTGAAAGGAA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGCTGAGTTATACGCCTTaGCAGATAAGTGATACAGAG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGLSYTP*QISDTE
Trigger: CTCTGTATCACTTATCTGTCAAGGCGTATAACTCAG...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCACAACATGAATGATTaGAGCACTAGCAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDHNMND*STSSSH
Trigger: ATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGTCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDQTHHS*CECLPV
Trigger: GACGGGAAGACATTCACAGCAACTGTGGTGGGTTTG...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTTCTTGAACAAAAACTaGGCCATGCAGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGFLNKN*AMQCVV
Trigger: GACTACACACTGCATGGCCCAGTTTTTGTTCAAGAA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTCAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAATCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRESWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAAATGGAGTCCTAGCTTaGATAACATACATGGTGATG +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLNGVLA*ITYMVM
Trigger: CATCACCATGTATGTTATCCAAGCTAGGACTCCATT...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTACTGGCTGGTGGCTTaGTGGGTTCTTCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGYWLVA*WVLLQQ
Trigger: CTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTCCTGGCAAAGATACTaGCTGGTGGCTTGGTGGGTT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGSWQRY*LVAWWV
Trigger: AACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAACTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAACAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATTCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCATCAAATCACCAGCTaGATCCTGCCCTCCAACTCT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKHQITS*ILPSNS
Trigger: AGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACGAGCAGTGGTGTCTGTaGTTTCATCTATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDEQWCL*FHLWSQ
Trigger: CTGTGACCATAGATGAAATCACAGACACCACTGCTC...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGGCACACTCTCATTCCTaGACACGTATCTGGAGGCAT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGAHSHS*TRIWRH
Trigger: ATGCCTCCAGATACGTGTTCAGGAATGAGAGTGTGC...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCCGATGAATTCCATATaGTGTTTCCAGGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYPMNSI*CFQGVG
Trigger: GCCAACCCCCTGGAAACATCATATGGAATTCATCGG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAACACAACATGAATGATTaGAGCACTAGCAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREHNMND*STSSSH
Trigger: ATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTG...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACCCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCCACACACTGGTACATaGCAGCATCTGAGAGATTCA +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLPHTGT*QHLRDS
Trigger: TGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGACTGTATTGACTGCTTaGCAGCCCACGGAGAATGGA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKTVLTA*QPTENG
Trigger: TCCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTGGAACTGTATTGACTaGTTGCCAGCCCACGGAGAA +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYWNCID*LPAHGE
Trigger: TTCTCCGTGGGCTGGCAAGCAGTCAATACAGTTCCA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGQTHHS*CECLPV
Trigger: GACGGGAAGACATTCACAGCAACTGTGGTGGGTTTG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYQTHHS*CECLPV
Trigger: GACGGGAAGACATTCACAGCAACTGTGGTGGGTTTG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTGCCAATCACATTAGCTaGAACAGTGCGGAATTCATA +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPANHIS*NSAEFI
Trigger: TATGAATTCCGCACTGTTGCAGCTAATGTGATTGGC...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACGCCAATCACATTAGCTaGAACAGTGCGGAATTCATA +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHANHIS*NSAEFI
Trigger: TATGAATTCCGCACTGTTGCAGCTAATGTGATTGGC...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGCATCCAGATCATTTTaGCATGTGGCCGGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKASRSF*HVAGRQ
Trigger: TTGCCTTCCGGCCACATGGCAAAATGATCTGGATGC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGCATCCAGATCATTTTaGCATGTGGCCGGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYASRSF*HVAGRQ
Trigger: TTGCCTTCCGGCCACATGGCAAAATGATCTGGATGC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTTCGGATTTGCTCACTaGTGCTGCCATCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKFGFAH*CCHLLH
Trigger: ATGGAGGAGATGGCAGCAGCAGTGAGCAAATCCGAA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACATTCTTGAACAAAAACTaGGCCATGCAGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTFLNKN*AMQCVV
Trigger: GACTACACACTGCATGGCCCAGTTTTTGTTCAAGAA...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: HVVATQGKDRTNCAHLELKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSGLVV*AVPGPC
Trigger: ACAAGGTCCTGGGACCGCCCACACCACTAATCCTGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: RKKSRILFKTALLNLPNASRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRSRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGGGCTTTCCTTGCTATTaGCTTGCCATCAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGGFPCY*LAISSS
Trigger: CGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCC...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATCTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGGTGTAGACAGGTCTTaGGGATGCTTTTGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKGVDRS*GCFWLA
Trigger: TGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTTTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCATTCCCAGTACTGCTaGCAGTTCCAAAATGGTTCG +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLHSQYC*QFQNGS
Trigger: CGAACCATTTTGGAACTGCCAGCAGTACTGGGAATG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATGTGTTACCTGGCATaGAAGAACAATGCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVMCYLA*KNNAFS
Trigger: GGAGAAAGCATTGTTCTTCCATGCCAGGTAACACAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGACCAGCATGCTTCAGTTaGATGTTTCGGATCATCAAA +
Preference number: 4 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRPACFS*MFRIIK
Trigger: TTTGATGATCCGAAACATCCAACTGAAGCATGCTGG...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTTGTCTACACTTGTTTaGACCATGCAGACATACTTC +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGLSTLV*TMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTGGCTGGTGGCTTGGTaGGTTCTTCTTCAGCAGAAT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYWLVAW*VLLQQN
Trigger: ATTCTGCTGAAGAAGAACCCACCAAGCCACCAGCCA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTGGCAGAAAGACTCCTaGCAAAGATACTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYWQKDS*QRYWLV
Trigger: CACCAGCCAGTATCTTTGCCAGGAGTCTTTCTGCCA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLFYWGY*STSCRQ
Trigger: TTGACGGCAGCTTGTTGATCAATAACCCCAATAAAA...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACATTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTFYWGY*STSCRQ
Trigger: TTGACGGCAGCTTGTTGATCAATAACCCCAATAAAA...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACACTGACCTCGACGGACTaGCACAGTGCTTCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTLTSTD*HSASCS
Trigger: AGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAG...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGTMSRE*SCVTWH
Trigger: ATGCCAGGTAACACATGATCACTCCCTGGACATTGT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCAT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKTMSRE*SCVTWH
Trigger: ATGCCAGGTAACACATGATCACTCCCTGGACATTGT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTCTTGCATAGGAATTTaGTATCTTTGGGATTCGGAT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDSCIGI*YLWDSD
Trigger: ATCCGAATCCCAAAGATATCAAATTCCTATGCAAGA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTATTGTACTGATGGCTaGCAGCGTACACGCATTGGA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKYCTDG*QRTRIG
Trigger: TCCAATGCGTGTACGCTGTCAGCCATCAGTACAATA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGCACAACATGAATGATTaGAGCACTAGCAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLHNMND*STSSSH
Trigger: ATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTG...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTATCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAACTGTATTGACTGCTTaGCAGCCCACGGAGAATGGA +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKTVLTA*QPTENG
Trigger: TCCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAATGGAACTGTATTGACTaGTTGCCAGCCCACGGAGAA +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKWNCID*LPAHGE
Trigger: TTCTCCGTGGGCTGGCAAGCAGTCAATACAGTTCCA...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTTTGGGATTCGGATTTaGTCACTGCTGCTGCCATCT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYFGIRI*SLLLPS
Trigger: AGATGGCAGCAGCAGTGAGCAAATCCGAATCCCAAA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTATTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACAGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGGTCCCAGGACCTTGTaGTTGGTCACAGTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHGPRTL*LVTVLV
Trigger: TACCAACACTGTGACCAACCACAAGGTCCTGGGACC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLSRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGGCTTTCCTTGCTATTaGCTTGCCATCAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKGFPCY*LAISSS
Trigger: CGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCC...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDSWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATTGTCTACACTTGTTTaGACCATGCAGACATACTTC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVLSTLV*TMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGTCTACACTTGTTTaGACCATGCAGACATACTTC +
Preference number: 4 (lower is better)
Translates to: FISHVVATQGKDRTNCAHLSTLV*TMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAA...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATAGCCTCAGGAGGACCTaGAGGACCTCTTACAATCAG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSLRRT*RTSYNQ
Trigger: CTGATTGTAAGAGGTCCTCCAGGTCCTCCTGAGGCT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATGTGGTTGTCAGGTCCTaGTCTCCAAGAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDVVVRS*SPRKLS
Trigger: GCTCAGCTTTCTTGGAGACCAGGACCTGACAACCAC...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGTGGTTGTCAGGTCCTaGTCTCCAAGAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHVVVRS*SPRKLS
Trigger: GCTCAGCTTTCTTGGAGACCAGGACCTGACAACCAC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAATGGAGTCCTAGCTTaGATAACATACATGGTGATG +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVNGVLA*ITYMVM
Trigger: CATCACCATGTATGTTATCCAAGCTAGGACTCCATT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAAATGGAGTCCTAGCTTaGATAACATACATGGTGATG +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTNGVLA*ITYMVM
Trigger: CATCACCATGTATGTTATCCAAGCTAGGACTCCATT...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTACTGGCTGGTGGCTTaGTGGGTTCTTCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHYWLVA*WVLLQQ
Trigger: CTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAAAGATACTGGCTGGTaGCTTGGTGGGTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKKDTGW*LGGFFF
Trigger: GAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGGCAAAGATACTGGCTaGTGGCTTGGTGGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHGKDTG*WLGGFF
Trigger: GAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR CAA 72 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTaGGTGACCACTGTGAAAGTGTCATTGCACCTCCAG +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWP*VTTVKVSLHLQ
Trigger: CTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLNPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRENPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVNPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACAAGCCACACATTCATATaGACCGGCATCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTSHTFI*TGIFLL
Trigger: CAGCAGGAAGATGCCGGTTCATATGAATGTGTGGCT...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATTTTTGTGGATGTCTaGTTTCCAACTGTTCGTATC +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVIFVDV*FPTVRI
Trigger: GATACGAACAGTTGGAAATCAGACATCCACAAAAAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATTCCTTTCAAGTTGGTaGTTTTTGTGGATGTCTGAT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVFLSSW*FLWMSD
Trigger: ATCAGACATCCACAAAAATCACCAACTTGAAAGGAA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTCTTGTTGGTTTCAATaGCAGATGTGCTGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGSCWFQ*QMCCFA
Trigger: GGCAAAGCAGCACATCTGTCATTGAAACCAACAAGA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCTCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: GESCVDIELIETNYQEEVSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: PFITWRSHIHISEYPGQLMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR GCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTCACATTCCCAGTACTaGTGGCAGTTCCAAAATGGT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYSHSQY*WQFQNG
Trigger: ACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGG +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKTYFPA*FSWMFR
Trigger: CCGAAACATCCAACTGAAGCATGCTGGGAAGTATGT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCACTTGTTTGGACCATaGAGACATACTTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGHLFGP*RHTSQH
Trigger: ATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCACTTGTTTGGACCATaGAGACATACTTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKHLFGP*RHTSQH
Trigger: ATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTTCGGATTTGCTCACTaGTGCTGCCATCTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHFGFAH*CCHLLH
Trigger: ATGGAGGAGATGGCAGCAGCAGTGAGCAAATCCGAA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTATTCTTGAACAAAAACTaGGCCATGCAGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVFLNKN*AMQCVV
Trigger: GACTACACACTGCATGGCCCAGTTTTTGTTCAAGAA...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGTACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTACAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGGCTTTCCTTGCTATTaGCTTGCCATCAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHGFPCY*LAISSS
Trigger: CGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACACTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKSWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACACTGGCAGTTCCAAAATaGTTCGTGGCTATGCAGGTG +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTLAVPK*FVAMQV
Trigger: CACCTGCATAGCCACGAACCATTTTGGAACTGCCAG...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTAACCATCACCTTTGTTaGGTCTTTCACAATCACATT +
Preference number: 4 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPNHHLC*VFHNHI
Trigger: AATGTGATTGTGAAAGACCCAACAAAGGTGATGGTT...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAACCATCACCTTTGTTaGGTCTTTCACAATCACATT +
Preference number: 4 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVNHHLC*VFHNHI
Trigger: AATGTGATTGTGAAAGACCCAACAAAGGTGATGGTT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACCCAGCATGCTTCAGTTaGATGTTTCGGATCATCAAA +
Preference number: 4 (lower is better)
Translates to: EERVDFGSIMLFCALPLDPACFS*MFRIIK
Trigger: TTTGATGATCCGAAACATCCAACTGAAGCATGCTGG...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGGCAGAAAGACTCCTaGCAAAGATACTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHWQKDS*QRYWLV
Trigger: CACCAGCCAGTATCTTTGCCAGGAGTCTTTCTGCCA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGAGCAGTGGTGTCTGTaGTTTCATCTATGGTCACAG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHEQWCL*FHLWSQ
Trigger: CTGTGACCATAGATGAAATCACAGACACCACTGCTC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGTATCCTTTTACTTCTaGCTCATTATCCAGGGCCTT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYVSFYF*LIIQGL
Trigger: AAGGCCCTGGATAATGAGTCAGAAGTAAAAGGATAC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGTATCCTTTTACTTCTaGCTCATTATCCAGGGCCTT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKVSFYF*LIIQGL
Trigger: AAGGCCCTGGATAATGAGTCAGAAGTAAAAGGATAC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGAAATCATTATTGTACTaGTGGCTGACAGCGTACACG +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGKSLLY*WLTAYT
Trigger: CGTGTACGCTGTCAGCCATCAGTACAATAATGATTT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAAATCATTATTGTACTaGTGGCTGACAGCGTACACG +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKKSLLY*WLTAYT
Trigger: CGTGTACGCTGTCAGCCATCAGTACAATAATGATTT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCCTTGCTATTGGCTTaGCATCAGCTCTTCGCCATA +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSLLLA*HQLFAI
Trigger: TATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATTCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCTTCTGGCTTTCCTTaGTATTGGCTTGCCATCAGC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSSGFP*YWLAIS
Trigger: GCTGATGGCAAGCCAATAGCAAGGAAAGCCAGAAGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACACCTTGGCTACGTTTTTaGCTCTGGAGTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTPWLRF*LWSFQP
Trigger: TGGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGG...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR GCA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGG +
Preference number: 4 (lower is better)
Translates to: GESCVDIELIETNYQEEVTYFPA*FSWMFR
Trigger: CCGAAACATCCAACTGAAGCATGCTGGGAAGTATGT...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGCCAATCACATTAGCTaGAACAGTGCGGAATTCATA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKANHIS*NSAEFI
Trigger: TATGAATTCCGCACTGTTGCAGCTAATGTGATTGGC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAATTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAGCCGGGACGGTTTCTaGAAACTGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKSRDGF*KLYFYF
Trigger: AAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATAAGTCAACTGTCCCTTaGCTACGTTTTTGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDKSTVP*LRFCLW
Trigger: CCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTT...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTTCCAAAATGGTTCGTaGCTATGCAGGTGTAACTTC +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKFQNGS*LCRCNF
Trigger: GAAGTTACACCTGCATAGCCACGAACCATTTTGGAA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCCAGCATGCTTCAGTTaGATGTTTCGGATCATCAAA +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYPACFS*MFRIIK
Trigger: TTTGATGATCCGAAACATCCAACTGAAGCATGCTGG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKFYWGY*STSCRQ
Trigger: TTGACGGCAGCTTGTTGATCAATAACCCCAATAAAA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCCAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: GESCVDIELIETNYQEEVQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGCCTTGACAGATAAGTaGTACAGAGCACTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHALTDK*YRALPF
Trigger: GAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCTTGTTGGTTTCAATaGCAGATGTGCTGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSCWFQ*QMCCFA
Trigger: GGCAAAGCAGCACATCTGTCATTGAAACCAACAAGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAACACAACATGAATGATTaGAGCACTAGCAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKHNMND*STSSSH
Trigger: ATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTG...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAATGAGTTTGTTGCTATaGACTGGTACGTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKMSLLL*TGTFQH
Trigger: ATGCTGGAACGTACCAGTGCATAGCAACAAACTCAT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHTYFPA*FSWMFR
Trigger: CCGAAACATCCAACTGAAGCATGCTGGGAAGTATGT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAATTCTTGAACAAAAACTaGGCCATGCAGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKFLNKN*AMQCVV
Trigger: GACTACACACTGCATGGCCCAGTTTTTGTTCAAGAA...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTTTGTTGCTATGCACTaGTACGTTCCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHFVAMH*YVPASW
Trigger: CCAAGATGCTGGAACGTACCAGTGCATAGCAACAAA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTACAGATTTTTCCACTTTaGCAATATACAGATTCCCAG +
Preference number: 4 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVQIFPL*QYTDSQ
Trigger: CTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTG...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCTTCCTGCTGAAAATTaGGAATTTCCAGAATTCCAT +
Preference number: 4 (lower is better)
Translates to: LLLGEAISISLNTQGSFLLPAEN*EFPEFH
Trigger: ATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACATCTTGGGGATGCTTTTaGCTTGCACTCAATGACAAC +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTSWGCF*LALNDN
Trigger: GTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGA...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAATGTGTTACCTGGCATaGAAGAACAATGCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKMCYLA*KNNAFS
Trigger: GGAGAAAGCATTGTTCTTCCATGCCAGGTAACACAT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATAAACTTCGATATCCGTaGCAGAAAGACTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHKLRYP*QKDSWQ
Trigger: TTGCCAGGAGTCTTTCTGCCACGGATATCGAAGTTT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
3UTR CAA 72 bp AGGAAATCGGCTCAAATCATAATTGTGTGGTTTGTGTaGCCCAGAGCATTTTATAGCAGAGGAAGAAAGAAA +
Preference number: 4 (lower is better)
Translates to: RKSAQIIIVWFV*PRAFYSRGRKK
Trigger: TTTCTTTCTTCCTCTGCTATAAAATGCTCTGGGCAACACAAACCACACAATTATGATTTGAGCCGATTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATCAAAGCATTCCAGTTTaGCTGTTGTTCCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHQSIPV*LLFLSQ
Trigger: CTGAGAAAGGAACAACAGTCAAACTGGAATGCTTTG...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTT +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYSLLLC*VFLARF
Trigger: AAATCGAGCAAGGAACACTCAACATAACAATAGTGA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTACATGCCAGCATCTaGGAGATTCACTATTGTTAT +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKVHASI*EIHYCY
Trigger: ATAACAATAGTGAATCTCTCAGATGCTGGCATGTAC...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACATTTTTGTGGATGTCTaGTTTCCAACTGTTCGTATC +
Preference number: 4 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYIFVDV*FPTVRI
Trigger: GATACGAACAGTTGGAAATCAGACATCCACAAAAAT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAATACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCAATGGAGTCCTAGCTTaGATAACATACATGGTGATG +
Preference number: 4 (lower is better)
Translates to: GESCVDIELIETNYQEEVNGVLA*ITYMVM
Trigger: CATCACCATGTATGTTATCCAAGCTAGGACTCCATT...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKNPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHFYWGY*STSCRQ
Trigger: TTGACGGCAGCTTGTTGATCAATAACCCCAATAAAA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATCTTCACCTCCCACTTTaGCAAGTGTTACTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDLHLPL*QVLLFL
Trigger: TAAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAG...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTG +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHYVPAS*VLLGLL
Trigger: CAATAACCCCAATAAAACCCAAGATGCTGGAACGTA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCTGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: GESCVDIELIETNYQEEVCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATTTGTCTACACTTGTTTaGACCATGCAGACATACTTC +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDLSTLV*TMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAA...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATAATCCAAAGGAAACATaGCATGACTTGGTTCTTGAA +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHNPKET*HDLVLE
Trigger: TTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR TCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCTTGCATAGGAATTTaGTATCTTTGGGATTCGGAT +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSCIGI*YLWDSD
Trigger: ATCCGAATCCCAAAGATATCAAATTCCTATGCAAGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR GCA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR GCA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCC +
Preference number: 4 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHMLSVP*SICILS
Trigger: GGATAGAATACAAATCGAGCAAGGAACACTCAACAT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CCA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: THNVNICLFQWPLVTTVKKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACATGTTCGGGAAAAATCTaGACTTTCAGCTATTACACT +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTCSGKI*TFSYYT
Trigger: AGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACA...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CCA 90 bp ATTAATATGAATGCTGCCACGTCTGGTGATTCTATTATTAGAAGTAAAGGCACAAAACATGACATGACTTaGTTCTTGAACAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: INMNAATSGDSIIRSKGTKHDMT*FLNKNW
Trigger: CCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTT...TGTGCCTTTACTTCTAATAATAGAATCACCAGACGTGGCAGCATTCATATTAAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS GCA 90 bp TGGAGGCATCAGCTGAAGCCAGCACGGTCAGCATCCAGATCATTTTaGCATGTGGCCGGAAGGCAACCACGTAACCAAAGCCTCTGCCAT +
Preference number: 5 (lower is better)
Translates to: WRHQLKPARSASRSF*HVAGRQPRNQSLCH
Trigger: ATGGCAGAGGCTTTGGTTACGTGGTTGCCTTCCGGCCACATGGCAAAATGATCTGGATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 90 bp TGGACGCACACTCTCATTCCTGAACACGTATCTGGAGGCATCAGCTaGAGCCAGCACGGTCAGCATCCAGATCATTTTGCCATGTGGCCG +
Preference number: 5 (lower is better)
Translates to: WTHTLIPEHVSGGIS*SQHGQHPDHFAMWP
Trigger: CGGCCACATGGCAAAATGATCTGGATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCAGATACGTGTTCAGGAATGAGAGTGTGCGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGTGATGGGGCTGTGGTaGTCAGGTCCTGGTCTCCAA +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEVMGLW*SGPGLQ
Trigger: TTGGAGACCAGGACCTGACAACCACAGCCCCATCAC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTTCCAGGGGGTTGGCTaGGTGGTGGCTTTCTGGTCG +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVFQGVG*VVAFWS
Trigger: CGACCAGAAAGCCACCACCAAGCCAACCCCCTGGAA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 90 bp CTTGAGAAACGAAGCGGCGGTTATCCTGATAGGAAGGGTATTCATTaGAGATCCAGGCATAGCTCAGCTCTCCAGAATGGGGTGGCGGGC +
Preference number: 5 (lower is better)
Translates to: LEKRSGGYPDRKGIH*RSRHSSALQNGVAG
Trigger: GCCCGCCACCCCATTCTGGAGAGCTGAGCTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAACCGCCGCTTCGTTTCTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGGTGATGGGGCTGTGGTaGTCAGGTCCTGGTCTCCAA +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVVMGLW*SGPGLQ
Trigger: TTGGAGACCAGGACCTGACAACCACAGCCCCATCAC...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTCAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGERCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTAGTGATGGGGCTGTGGTaGTCAGGTCCTGGTCTCCAA +
Preference number: 5 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLVMGLW*SGPGLQ
Trigger: TTGGAGACCAGGACCTGACAACCACAGCCCCATCAC...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGAACTGTATTGACTGCTaGCCAGCCCACGGAGAATGG +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGENCIDC*PAHGEW
Trigger: CCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGTT...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTCCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: HVVATQGKDRTNCAHLELPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAACCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFRCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACAGATCTGGAACTGTATaGACTGCTTGCCAGCCCACG +
Preference number: 5 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYRSGTV*TACQPT
Trigger: CGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATCT...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGATACTGGCTGGTGGCTaGGTGGGTTCTTCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVILAGG*VGSSSA
Trigger: TGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTAT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCTTTGGGATTCGGATTaGCTCACTGCTGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVLWDSD*LTAAAI
Trigger: GATGGCAGCAGCAGTGAGCAAATCCGAATCCCAAAG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGACAGCGTACACGCATaGGAGGTAGAAGCCCCCGAT +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGDSVHA*EVEAPD
Trigger: ATCGGGGGCTTCTACCTCCAATGCGTGTACGCTGTC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CCA 90 bp AGAAAACTTCGATATCCGTGGCAGAAAGACTCCTGGCAAAGATACTaGCTGGTGGCTTGGTGGGTTCTTCTTCAGCAGAATACACCAGCG +
Preference number: 5 (lower is better)
Translates to: RKLRYPWQKDSWQRY*LVAWWVLLQQNTPA
Trigger: CGCTGGTGTATTCTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGAGTCTTTCTGCCACGGATATCGAAGTTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: HVVATQGKDRTNCAHLELFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATCCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCCCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCCCAGCATGCTTCAGTaGGATGTTTCGGATCATCAA +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEPSMLQ*DVSDHQ
Trigger: TTGATGATCCGAAACATCCAACTGAAGCATGCTGGG...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACC +
Preference number: 5 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGAATES*STLVWT
Trigger: GGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGC...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGATGTTTCCAGGGGGTaGGCTTGGTGGTGGCTTTCT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDDVSRG*AWWWLS
Trigger: AGAAAGCCACCACCAAGCCAACCCCCTGGAAACATC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDRCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGCCCAGCATGCTTCAGTaGGATGTTTCGGATCATCAA +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVPSMLQ*DVSDHQ
Trigger: TTGATGATCCGAAACATCCAACTGAAGCATGCTGGG...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCTTTGGGATTCGGATTaGCTCACTGCTGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDLWDSD*LTAAAI
Trigger: GATGGCAGCAGCAGTGAGCAAATCCGAATCCCAAAG...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CCA 90 bp TTCTCTTCCCTTTCTCCAGGTGTAGACAGGTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAACTTCACCTCCCACTTTGACAAGTGT +
Preference number: 5 (lower is better)
Translates to: FSSLSPGVDRSWGCF*LALNDNFTSHFDKC
Trigger: ACACTTGTCAAAGTGGGAGGTGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCTGGAGAAAGGGAAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CCA 90 bp CCACGTAAACACAATGTCCAGGGAGTGATCATGTGTTACCTGGCATaGAAGAACAATGCTTTCTCCTACAGTGACATCCATGCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: PRKHNVQGVIMCYLA*KNNAFSYSDIHAGR
Trigger: CCTTCCAGCATGGATGTCACTGTAGGAGAAAGCATTGTTCTTCCATGCCAGGTAACACATGATCACTCCCTGGACATTGTGTTTACGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTACAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTCCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: PFITWRSHIHISEYPGQLPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTCCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: PFITWRSHIHISEYPGQLPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACC +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPAATES*STLVWT
Trigger: GGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGC...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAAACTGTATTGACTGCTaGCCAGCCCACGGAGAATGG +
Preference number: 5 (lower is better)
Translates to: WSLQSSGRMRAHAEDHRENCIDC*PAHGEW
Trigger: CCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGTT...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAAGATCTGGAACTGTATaGACTGCTTGCCAGCCCACG +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTRSGTV*TACQPT
Trigger: CGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATCT...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATATAACCAGTTCAGATTaGCTGCCTCCACCACCACTG +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDITSSD*LPPPPL
Trigger: CAGTGGTGGTGGAGGCAGCAAATCTGAACTGGTTAT...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAGCATCCAGATCATTTaGCCATGTGGCCGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSIQII*PCGRKA
Trigger: TGCCTTCCGGCCACATGGCAAAATGATCTGGATGCT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTTTCTGGTCGTGACATaGACTGTTGCACTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDFLVVT*TVALEG
Trigger: ACCCTCCAGTGCAACAGTCAATGTCACGACCAGAAA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGTTCCAGGGGGTTGGCTaGGTGGTGGCTTTCTGGTCG +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGFQGVG*VVAFWS
Trigger: CGACCAGAAAGCCACCACCAAGCCAACCCCCTGGAA...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 90 bp CTGGAGGGTCCTGTCCCAGCTGAGTTATACGCCTTGACAGATAAGTaGTACAGAGCACTTCCTTTCAAGTTGGTGATTTTTGTGGATGTC +
Preference number: 5 (lower is better)
Translates to: LEGPVPAELYALTDK*YRALPFKLVIFVDV
Trigger: GACATCCACAAAAATCACCAACTTGAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGCGTATAACTCAGCTGGGACAGGACCCTCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCGACATGACTTGGTTCTaGAACAAAAACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPDMTWF*NKNWAM
Trigger: CATGGCCCAGTTTTTGTTCAAGAACCAAGTCATGTC...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: RKKSRILFKTALLNLPNAFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCTCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGT +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFKWSPS*SKSIKC
Trigger: ACACTTGATAGACTTTGACAAGGATGGAGACCACTT...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGAGAGTTTGTCTACACTaGTTTGGACCATGCAGACAT +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVRVCLH*FGPCRH
Trigger: ATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCT...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTACAGAGTTTGTCTACACTaGTTTGGACCATGCAGACAT +
Preference number: 5 (lower is better)
Translates to: CGGNTRKRQDKLCPLGAYRVCLH*FGPCRH
Trigger: ATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCT...GTAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGTGATGGGGCTGTGGTaGTCAGGTCCTGGTCTCCAA +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKVMGLW*SGPGLQ
Trigger: TTGGAGACCAGGACCTGACAACCACAGCCCCATCAC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGAAAGGGCCTTCCCCTTaGTTATTGAAGACACCCACT +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGKGPSP*LLKTPT
Trigger: AGTGGGTGTCTTCAATAACAAAGGGGAAGGCCCTTT...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGACAGCGTACACGCATaGGAGGTAGAAGCCCCCGAT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYDSVHA*EVEAPD
Trigger: ATCGGGGGCTTCTACCTCCAATGCGTGTACGCTGTC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 90 bp CTATGCACTGGTACGTTCCAGCATCTTGGGTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAACAACACTGTAGCGGAAATCCATAC +
Preference number: 5 (lower is better)
Translates to: LCTGTFQHLGFYWGY*STSCRQQHCSGNPY
Trigger: GTATGGATTTCCGCTACAGTGTTGTTGACGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCAGTGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: SGVAGCSEKCWANGFSEEASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCTTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTATTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: MWWQHKEKTGQTVPTWSLLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...TAAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGCAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: LLLGEAISISLNTQGSFLQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: GVAGCSEKCWANGFSEEGSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...ACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATGAGAACCACTGCTATGTTGAGTGTTCCTaGCTCGATTTGTATTCTATC +
Preference number: 5 (lower is better)
Translates to: PLVTTVKVSLHLQDENHCYVECS*LDLYSI
Trigger: GATAGAATACAAATCGAGCAAGGAACACTCAACATA...GCAGTGGTTCTCATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGTATGTTGAGTGTTCCTaGCTCGATTTGTATTCTATC +
Preference number: 5 (lower is better)
Translates to: VAGCSEKCWANGFSEEGEYVECS*LDLYSI
Trigger: GATAGAATACAAATCGAGCAAGGAACACTCAACATA...CTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TCTGGAGTAGCAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: SGVAGCSEKCWANGFSEETSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...TTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTGCTACTCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: LLLGEAISISLNTQGSFLRCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACACCCAGCATGCTTCAGTaGGATGTTTCGGATCATCAA +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTPSMLQ*DVSDHQ
Trigger: TTGATGATCCGAAACATCCAACTGAAGCATGCTGGG...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTTTGTCTACACTTGTTaGGACCATGCAGACATACTT +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFFVYTC*DHADIL
Trigger: AAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATAGAGTTTGTCTACACTaGTTTGGACCATGCAGACAT +
Preference number: 5 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDRVCLH*FGPCRH
Trigger: ATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCT...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp TATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACC +
Preference number: 5 (lower is better)
Translates to: YLSFPMAFGDHCESVIAPAATES*STLVWT
Trigger: GGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGC...AGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCGTGATGGGGCTGTGGTaGTCAGGTCCTGGTCTCCAA +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVVMGLW*SGPGLQ
Trigger: TTGGAGACCAGGACCTGACAACCACAGCCCCATCAC...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAATCCAGGGCCTTCACTaGATCCCAGTTCAGGATAAT +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVIQGLH*IPVQDN
Trigger: ATTATCCTGAACTGGGATCAAGTGAAGGCCCTGGAT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAGACAGATGTGCTGCTTaGCCTGTTCCATCTGTACAA +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVDRCAA*PVPSVQ
Trigger: TTGTACAGATGGAACAGGCAAAGCAGCACATCTGTC...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS GCA 90 bp AGTTTGTCTACACTTGTTTGGACCATGCAGACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGGATCATCAAATCACCAGCTGAATCC +
Preference number: 5 (lower is better)
Translates to: SLSTLVWTMQTYFPA*FSWMFRIIKSPAES
Trigger: GGATTCAGCTGGTGATTTGATGATCCGAAACATCCAACTGAAGCATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGACATGACTTGGTTCTaGAACAAAAACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRDMTWF*NKNWAM
Trigger: CATGGCCCAGTTTTTGTTCAAGAACCAAGTCATGTC...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: LLLGEAISISLNTQGSFLFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTATGTTGAGTGTTCCTaGCTCGATTTGTATTCTATC +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVYVECS*LDLYSI
Trigger: GATAGAATACAAATCGAGCAAGGAACACTCAACATA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CAGGTTGCTCAGAGAAGTGCTGGGCTAATGGCTTCTCAGAAGAAGGTGAGCTTTTATGTTGAGTGTTCCTaGCTCGATTTGTATTCTATC +
Preference number: 5 (lower is better)
Translates to: QVAQRSAGLMASQKKVSFYVECS*LDLYSI
Trigger: GATAGAATACAAATCGAGCAAGGAACACTCAACATA...AAAGCTCACCTTCTTCTGAGAAGCCATTAGCCCAGCACTTCTCTGAGCAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGAGAATTGCACAAGGTACCTCTTGGGCTGGGAAGTTTAGCTTTTGGGATGTGTTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: GRIAQGTSWAGKFSFWDVFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...CACATCCCAAAAGCTAAACTTCCCAGCCCAAGAGGTACCTTGTGCAATTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACTTGGAGCTTTTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: HVVATQGKDRTNCAHLELFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...AAGCTCCAAGTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCTCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGAACTGTATTGACTGCTaGCCAGCCCACGGAGAATGG +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGNCIDC*PAHGEW
Trigger: CCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGTT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAACTGTATTGACTGCTaGCCAGCCCACGGAGAATGG +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKNCIDC*PAHGEW
Trigger: CCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGTT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAGATCTGGAACTGTATaGACTGCTTGCCAGCCCACG +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKRSGTV*TACQPT
Trigger: CGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATCT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAGCATCCAGATCATTTaGCCATGTGGCCGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKSIQII*PCGRKA
Trigger: TGCCTTCCGGCCACATGGCAAAATGATCTGGATGCT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTCCACTGATGTCTTGTaGGTTTCAATGACAGATGTG +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDSTDVL*VSMTDV
Trigger: CACATCTGTCATTGAAACCAACAAGACATCAGTGGA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: WSLQSSGRMRAHAEDHREVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...TTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: RKKSRILFKTALLNLPNAVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp AGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAACACCCTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: SGRMRAHAEDHRETWTTPSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...GGGTGTTGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAACCCAGGACCTTGTGGTaGGTCACAGTGTTGGTAACT +
Preference number: 5 (lower is better)
Translates to: THNVNICLFQWPLVTTVKPRTLW*VTVLVT
Trigger: AGTTACCAACACTGTGACCAACCACAAGGTCCTGGG...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CTTTTCCAATGGCCTTTGGTGACCACTGTGAAAGTGTCATTGCACCTCCAGGATTTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: LFQWPLVTTVKVSLHLQDFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...ATCCTGGAGGTGCAATGACACTTTCACAGTGGTCACCAAAGGCCATTGGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDTSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: THNVNICLFQWPLVTTVKRCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTAAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGT +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVKWSPS*SKSIKC
Trigger: ACACTTGATAGACTTTGACAAGGATGGAGACCACTT...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGT +
Preference number: 5 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRKWSPS*SKSIKC
Trigger: ACACTTGATAGACTTTGACAAGGATGGAGACCACTT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTTTGTCTACACTTGTTaGGACCATGCAGACATACTT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDFVYTC*DHADIL
Trigger: AAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACAGAATGGAGTCCTAGCTaGGATAACATACATGGTGAT +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTEWSPS*DNIHGD
Trigger: ATCACCATGTATGTTATCCAAGCTAGGACTCCATTC...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTTATTAGTCATGTGGTGGCAACACAAGGAAAAGACAGGACAAACTGTGCCCACGAATGGAGTCCTAGCTaGGATAACATACATGGTGAT +
Preference number: 5 (lower is better)
Translates to: FISHVVATQGKDRTNCAHEWSPS*DNIHGD
Trigger: ATCACCATGTATGTTATCCAAGCTAGGACTCCATTC...GTGGGCACAGTTTGTCCTGTCTTTTCCTTGTGTTGCCACCACATGACTAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCAACTGTATTGACTGCTaGCCAGCCCACGGAGAATGG +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVNCIDC*PAHGEW
Trigger: CCATTCTCCGTGGGCTGGCAAGCAGTCAATACAGTT...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCAGATCTGGAACTGTATaGACTGCTTGCCAGCCCACG +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVRSGTV*TACQPT
Trigger: CGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATCT...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGATAACCAGTTCAGATTaGCTGCCTCCACCACCACTG +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGITSSD*LPPPPL
Trigger: CAGTGGTGGTGGAGGCAGCAAATCTGAACTGGTTAT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTTTTACCTCATAACCTaGAATCCGTCCTCTGTTCTT +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGFYLIT*NPSSVL
Trigger: AAGAACAGAGGACGGATTCAAGGTTATGAGGTAAAA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGTTTCTGGTCGTGACATaGACTGTTGCACTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKFLVVT*TVALEG
Trigger: ACCCTCCAGTGCAACAGTCAATGTCACGACCAGAAA...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 90 bp ATCAAGTGTCCATTAAATGTCCACGTAAACACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCATGGAAGAACAATGCTTTCTCCTACA +
Preference number: 5 (lower is better)
Translates to: IKCPLNVHVNTMSRE*SCVTWHGRTMLSPT
Trigger: TGTAGGAGAAAGCATTGTTCTTCCATGCCAGGTAACACATGATCACTCCCTGGACATTGTGTTTACGTGGACATTTAATGGACACTTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 90 bp CATCGAAAGGTAATGAAAGCTCCACTGATGTCTTGTTGGTTTCAATaGCAGATGTGCTGCTTTGCCTGTTCCATCTGTACAAGACTTTGT +
Preference number: 5 (lower is better)
Translates to: HRKVMKAPLMSCWFQ*QMCCFACSICTRLC
Trigger: ACAAAGTCTTGTACAGATGGAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCTTTCATTACCTTTCGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS GCA 90 bp AGCTCCACTGATGTCTTGTTGGTTTCAATGACAGATGTGCTGCTTTaGCTGTTCCATCTGTACAAGACTTTGTATCCTTTTACTTCTGAC +
Preference number: 5 (lower is better)
Translates to: SSTDVLLVSMTDVLL*LFHLYKTLYPFTSD
Trigger: GTCAGAAGTAAAAGGATACAAAGTCTTGTACAGATGGAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGGACATGACTTGGTTCTaGAACAAAAACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: LLLGEAISISLNTQGSFLDMTWF*NKNWAM
Trigger: CATGGCCCAGTTTTTGTTCAAGAACCAAGTCATGTC...CAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATCAGATTCCCAGTCTCTaGAGAAACGAAGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDQIPSL*RNEAAV
Trigger: AACCGCCGCTTCGTTTCTCAAGAGACTGGGAATCTG...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp TATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCTGGGGTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: YARSLVDIIYTGVGNYLGSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...CCCCAGGTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATCCCTTGGCTACGTTTTaGCCTCTGGAGTTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHPLATF*PLEFSA
Trigger: GGCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGG...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATATACAGCAGCCTTGAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATTTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: IYSSLELQTQSPAVLTLDFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...ATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTCAAGGCTGCTGTATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: PFITWRSHIHISEYPGQLTSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp ACTTGGAGCTTACAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: TWSLQSSGRMRAHAEDHRTSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...TCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTGTAAGCTCCAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
42% GC, longest homopolymer 8 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATAGGTGTAGACAGGTCTaGGGGATGCTTTTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHRCRQV*GMLLAC
Trigger: GCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCCCAGCATGCTTCAGTaGGATGTTTCGGATCATCAA +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYPSMLQ*DVSDHQ
Trigger: TTGATGATCCGAAACATCCAACTGAAGCATGCTGGG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGAAGAAGTCAAGGATCCTCTTTAAGACAGCGCTTCTCAACCTTCCAAATGCTTTTGTCTACACTTGTTaGGACCATGCAGACATACTT +
Preference number: 5 (lower is better)
Translates to: RKKSRILFKTALLNLPNAFVYTC*DHADIL
Trigger: AAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAA...AGCATTTGGAAGGTTGAGAAGCGCTGTCTTAAAGAGGATCCTTGACTTCTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACATTTGTCTACACTTGTTaGGACCATGCAGACATACTT +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTFVYTC*DHADIL
Trigger: AAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAA...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACC +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGAATES*STLVWT
Trigger: GGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGC...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATAGATCTGGAACTGTATaGACTGCTTGCCAGCCCACG +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHRSGTV*TACQPT
Trigger: CGTGGGCTGGCAAGCAGTCAATACAGTTCCAGATCT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACAAAGGGCCTTCCCCTTaGTTATTGAAGACACCCACT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYKGPSP*LLKTPT
Trigger: AGTGGGTGTCTTCAATAACAAAGGGGAAGGCCCTTT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATATACTGGCTGGTGGCTaGGTGGGTTCTTCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHILAGG*VGSSSA
Trigger: TGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTAT...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAGTTACAGACCCAGTCTCCAGCTGTTTTGACACTGGATCCTTGTAAAACTGTATTTTACCTCATAACCTaGAATCCGTCCTCTGTTCTT +
Preference number: 5 (lower is better)
Translates to: ELQTQSPAVLTLDPCKTVFYLIT*NPSSVL
Trigger: AAGAACAGAGGACGGATTCAAGGTTATGAGGTAAAA...TACAGTTTTACAAGGATCCAGTGTCAAAACAGCTGGAGACTGGGTCTGTAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGATCCAGGGCCTTCACTaGATCCCAGTTCAGGATAAT +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGIQGLH*IPVQDN
Trigger: ATTATCCTGAACTGGGATCAAGTGAAGGCCCTGGAT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS GCA 90 bp ATGCCAGCATCTGAGAGATTCACTATTGTTATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCCCGTGTTAACAGTGGGTCACCATTT +
Preference number: 5 (lower is better)
Translates to: MPASERFTIVMLSVP*SICILSRVNSGSPF
Trigger: AAATGGTGACCCACTGTTAACACGGGATAGAATACAAATCGAGCAAGGAACACTCAACATAACAATAGTGAATCTCTCAGATGCTGGCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTATTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTTCCTTGCTATTGGCTaGCCATCAGCTCTTCGCCAT +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHFLAIG*PSALRH
Trigger: ATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp CCCTTTATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTATGTTGAGTGTTCCTaGCTCGATTTGTATTCTATC +
Preference number: 5 (lower is better)
Translates to: PFITWRSHIHISEYPGQLYVECS*LDLYSI
Trigger: GATAGAATACAAATCGAGCAAGGAACACTCAACATA...AAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAATAAAGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp CAATCTAGTGGGAGAATGAGAGCACATGCAGAAGATCACAGAGAAACTTGGACATTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: QSSGRMRAHAEDHRETWTFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...TGTCCAAGTTTCTCTGTGATCTTCTGCATGTGCTCTCATTCTCCCACTAGATTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS-3UTR CAA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGTCAGATTTAGTCACATaGATGATTCTGAGGTTCCCA +
Preference number: 5 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLSDLVT*MILRFP
Trigger: TGGGAACCTCAGAATCATCAATGTGACTAAATCTGA...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACGAATGGAGTCCTAGCTaGGATAACATACATGGTGAT +
Preference number: 5 (lower is better)
Translates to: EERVDFGSIMLFCALPLDEWSPS*DNIHGD
Trigger: ATCACCATGTATGTTATCCAAGCTAGGACTCCATTC...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGCCTTCCCCTTTGTTATaGAAGACACCCACTTTAACC +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGPSPLL*KTPTLT
Trigger: GGTTAAAGTGGGTGTCTTCAATAACAAAGGGGAAGG...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACAAGCCCCCGATCCTCTaGCATAGGAATTTGATATCT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYKPPIL*HRNLIS
Trigger: AGATATCAAATTCCTATGCAAGAGGATCGGGGGCTT...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCGACATGACTTGGTTCTaGAACAAAAACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVDMTWF*NKNWAM
Trigger: CATGGCCCAGTTTTTGTTCAAGAACCAAGTCATGTC...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GAAGAGAGAGTTGACTTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: EERVDFGSIMLFCALPLDASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...GTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAAGTCAACTCTCTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACGTACGTTCCAGCATCTaGGGTTTTATTGGGGTTATT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYVRSSI*GFIGVI
Trigger: AATAACCCCAATAAAACCCAAGATGCTGGAACGTAC...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACTTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp TGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTAAAACTGTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: WRSHIHISEYPGQLFVKLSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...CAGTTTTACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATGGGGATGCTTTTGGCTaGCACTCAATGACAACTTCA +
Preference number: 5 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDGDAFG*HSMTTS
Trigger: TGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCC...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp TTTGGAAGTATTATGCTGTTTTGTGCTCTACCACTAGACTCAAATAAAGAGGATCCCAGCATGCTTCAGTaGGATGTTTCGGATCATCAA +
Preference number: 5 (lower is better)
Translates to: FGSIMLFCALPLDSNKEDPSMLQ*DVSDHQ
Trigger: TTGATGATCCGAAACATCCAACTGAAGCATGCTGGG...ATCCTCTTTATTTGAGTCTAGTGGTAGAGCACAAAACAGCATAATACTTCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGAGAGTTTGTCTACACTaGTTTGGACCATGCAGACAT +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKRVCLH*FGPCRH
Trigger: ATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCT...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGACAGATGTGCTGCTTaGCCTGTTCCATCTGTACAA +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHDRCAA*PVPSVQ
Trigger: TTGTACAGATGGAACAGGCAAAGCAGCACATCTGTC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGACATGACTTGGTTCTaGAACAAAAACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHDMTWF*NKNWAM
Trigger: CATGGCCCAGTTTTTGTTCAAGAACCAAGTCATGTC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCGTTTTATTGGGGTTATaGATCAACAAGCTGCCGTCA +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVVLLGL*INKLPS
Trigger: TGACGGCAGCTTGTTGATCAATAACCCCAATAAAAC...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAG +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKASWVL*GLLINK
Trigger: CTTGTTGATCAATAACCCCAATAAAACCCAAGATGC...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCTTGTTCCAAATGAGTTaGTTGCTATGCACTGGTACG +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVLFQMS*LLCTGT
Trigger: CGTACCAGTGCATAGCAACAAACTCATTTGGAACAA...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp ATTACTTGGAGAAGCCATATCCATATCTCTGAATACCCAGGGCAGCTTTTTGTATTCACTATTGTTATGTaGAGTGTTCCTTGCTCGATT +
Preference number: 5 (lower is better)
Translates to: ITWRSHIHISEYPGQLFVFTIVM*SVPCSI
Trigger: AATCGAGCAAGGAACACTCAACATAACAATAGTGAA...TACAAAAAGCTGCCCTGGGTATTCAGAGATATGGATATGGCTTCTCCAAGTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113258.8
CDS-3UTR CAA 90 bp TTCAACAAGAAAATTCACAACAGGGTGGGAAAACATATCACATATGTCAAGGGGACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: FNKKIHNRVGKHITYVKGTSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...CCCCTTGACATATGTGATATGTTTTCCCACCCTGTTGTGAATTTTCTTGTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GGGGAAAGCTGTGTAGATATAGAGCTAATTGAAACTAATTATCAGGAAGAAGTCAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGT +
Preference number: 5 (lower is better)
Translates to: GESCVDIELIETNYQEEVKWSPS*SKSIKC
Trigger: ACACTTGATAGACTTTGACAAGGATGGAGACCACTT...GACTTCTTCCTGATAATTAGTTTCAATTAGCTCTATATCTACACAGCTTTCCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATCCTTCCCCTTTGTTATaGAAGACACCCACTTTAACC +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHPSPLL*KTPTLT
Trigger: GGTTAAAGTGGGTGTCTTCAATAACAAAGGGGAAGG...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCAGTTCAGGATAATTTaGGAGTCCGATGAATTCCAT +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKQFRII*ESDEFH
Trigger: ATGGAATTCATCGGACTCCAAAATTATCCTGAACTG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCAGTTCAGGATAATTTaGGAGTCCGATGAATTCCAT +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYQFRII*ESDEFH
Trigger: ATGGAATTCATCGGACTCCAAAATTATCCTGAACTG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCTCTTGCATAGGAATTaGATATCTTTGGGATTCGGA +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKLLHRN*ISLGFG
Trigger: TCCGAATCCCAAAGATATCAAATTCCTATGCAAGAG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ACTCATAATGTAAATATCTGTCTTTTCCAATGGCCTTTGGTGACCACTGTGAAAACTTCACCTCCCACTTaGACAAGTGTTACTCTTTTT +
Preference number: 5 (lower is better)
Translates to: THNVNICLFQWPLVTTVKTSPPT*TSVTLF
Trigger: AAAAAGAGTAACACTTGTCAAAGTGGGAGGTGAAGT...TTTCACAGTGGTCACCAAAGGCCATTGGAAAAGACAGATATTTACATTATGAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATGAATGGAGTCCTAGCTaGGATAACATACATGGTGAT +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHEWSPS*DNIHGD
Trigger: ATCACCATGTATGTTATCCAAGCTAGGACTCCATTC...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp GCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTGCAGAGTTTCCAAAGCATCTGTACAAGACTTaGTATCCTTTTACTTCTGAC +
Preference number: 5 (lower is better)
Translates to: ALVTSYYRCLQCIAEFPKHLYKT*YPFTSD
Trigger: GTCAGAAGTAAAAGGATACAAAGTCTTGTACAGATG...CTTTGGAAACTCTGCAATGCACTGAAGACATCTGTAATATGATGTTACCAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp ATTACATATGCTAGATCACTGGTAGATATCATTTACACTGGGGTTGGGAACTACCATCTGTACAAGACTTaGTATCCTTTTACTTCTGAC +
Preference number: 5 (lower is better)
Translates to: ITYARSLVDIIYTGVGNYHLYKT*YPFTSD
Trigger: GTCAGAAGTAAAAGGATACAAAGTCTTGTACAGATG...GTAGTTCCCAACCCCAGTGTAAATGATATCTACCAGTGATCTAGCATATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCCACTGATGTCTTGTaGGTTTCAATGACAGATGTG +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSTDVL*VSMTDV
Trigger: CACATCTGTCATTGAAACCAACAAGACATCAGTGGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATCTCTTGCATAGGAATTaGATATCTTTGGGATTCGGA +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHLLHRN*ISLGFG
Trigger: TCCGAATCCCAAAGATATCAAATTCCTATGCAAGAG...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS-3UTR CAA 90 bp AGGACATATGTAAACTGCTTTGGTAACATCATATTACAGATGTCTTCAGTGCATTCAGATTTTTCCACTTaGGCAATATACAGATTCCCA +
Preference number: 5 (lower is better)
Translates to: RTYVNCFGNIILQMSSVHSDFST*AIYRFP
Trigger: TGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGA...ATGCACTGAAGACATCTGTAATATGATGTTACCAAAGCAGTTTACATATGTCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CCA 72 bp GAAGATCCAGGCATAGCTCAGCTCTCCAGAATGGGGTaGCGGGCCGCACAGAAGGACCATTCCCTGACCTCG +
Preference number: 6 (lower is better)
Translates to: EDPGIAQLSRMG*RAAQKDHSLTS
Trigger: CGAGGTCAGGGAATGGTCCTTCTGTGCGGCCCGCCACCCCATTCTGGAGAGCTGAGCTATGCCTGGATCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp GTGGTACTCACGAGCCTCTTCTGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCCAATGCCAATCACATT +
Preference number: 6 (lower is better)
Translates to: VVLTSLFCPPFL*GPAGFPNANHI
Trigger: AATGTGATTGGCATTGGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACAGAAGAGGCTCGTGAGTACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS TCA 72 bp CCCAGTGTTCTGAGCCTCTTCTGTCCTCCGTTTCTCTaGGGGCCGGCTGGGTTCCCCAATGCCAATCACATT +
Preference number: 6 (lower is better)
Translates to: PSVLSLFCPPFL*GPAGFPNANHI
Trigger: AATGTGATTGGCATTGGGGAACCCAGCCGGCCCTCAGAGAAACGGAGGACAGAAGAGGCTCAGAACACTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113260.8
ENSMUST00000113261.9
CDS CCA 72 bp AGCCAGCACGGTCAGCATCCAGATCATTTTGCCATGTaGCCGGAAGGCAACCACGTAACCAAAGCCTCTGCC +
Preference number: 6 (lower is better)
Translates to: SQHGQHPDHFAM*PEGNHVTKASA
Trigger: GGCAGAGGCTTTGGTTACGTGGTTGCCTTCCGGCCACATGGCAAAATGATCTGGATGCTGACCGTGCTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS GCA 72 bp CAGCTGAAGCCAGCACGGTCAGCATCCAGATCATTTTaGCATGTGGCCGGAAGGCAACCACGTAACCAAAGC +
Preference number: 6 (lower is better)
Translates to: QLKPARSASRSF*HVAGRQPRNQS
Trigger: GCTTTGGTTACGTGGTTGCCTTCCGGCCACATGGCAAAATGATCTGGATGCTGACCGTGCTGGCTTCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CCA 72 bp CACCCATCACCCCATCATTTCTCAGGATTAGTGGTGTaGGCGGTCCCAGGACCTTGTGGTTGGTCACAGTGT +
Preference number: 6 (lower is better)
Translates to: HPSPHHFSGLVV*AVPGPCGWSQC
Trigger: ACACTGTGACCAACCACAAGGTCCTGGGACCGCCCACACCACTAATCCTGAGAAATGATGGGGTGATGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CCA 72 bp CGTGGCAGAAAGACTCCTGGCAAAGATACTGGCTGGTaGCTTGGTGGGTTCTTCTTCAGCAGAATACACCAG +
Preference number: 6 (lower is better)
Translates to: RGRKTPGKDTGW*LGGFFFSRIHQ
Trigger: CTGGTGTATTCTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGAGTCTTTCTGCCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CAA 90 bp GGACCTGGAGGACCTCTTACAATCAGGTCCGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACCATGCAGACATACTTCCCAGCATGC +
Preference number: 6 (lower is better)
Translates to: GPGGPLTIRSAATES*STLVWTMQTYFPAC
Trigger: GCATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGCGGACCTGATTGTAAGAGGTCCTCCAGGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp CGAAGCGGCGGTTATCCTGATAGGAAGGGTATTCATTaGAGATCCAGGCATAGCTCAGCTCTCCAGAATGGG +
Preference number: 6 (lower is better)
Translates to: RSGGYPDRKGIH*RSRHSSALQNG
Trigger: CCCATTCTGGAGAGCTGAGCTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAACCGCCGCTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp ACTCTCATTCCTGAACACGTATCTGGAGGCATCAGCTaGAGCCAGCACGGTCAGCATCCAGATCATTTTGCC +
Preference number: 6 (lower is better)
Translates to: TLIPEHVSGGIS*SQHGQHPDHFA
Trigger: GGCAAAATGATCTGGATGCTGACCGTGCTGGCTTCAGCTGATGCCTCCAGATACGTGTTCAGGAATGAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CCA 72 bp CGATATCCGTGGCAGAAAGACTCCTGGCAAAGATACTaGCTGGTGGCTTGGTGGGTTCTTCTTCAGCAGAAT +
Preference number: 6 (lower is better)
Translates to: RYPWQKDSWQRY*LVAWWVLLQQN
Trigger: ATTCTGCTGAAGAAGAACCCACCAAGCCACCAGCCAGTATCTTTGCCAGGAGTCTTTCTGCCACGGATATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS GCA 72 bp TCTTCCCTTTCTCCAGGTGTAGACAGGTCTTGGGGATaGTTTTGGCTTGCACTCAATGACAACTTCACCTCC +
Preference number: 6 (lower is better)
Translates to: SSLSPGVDRSWG*FWLALNDNFTS
Trigger: GGAGGTGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCTGGAGAAAGGGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp CACTGGAGGGTCCTGTCCCAGCTGAGTTATACGCCTTaGCAGATAAGTGATACAGAGCACTTCCTTTCAAGT +
Preference number: 6 (lower is better)
Translates to: HWRVLSQLSYTP*QISDTEHFLSS
Trigger: ACTTGAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGCGTATAACTCAGCTGGGACAGGACCCTCCAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 72 bp GGAGGTAGAAGCCCCCGATCCTCTTGCATAGGAATTTaGTATCTTTGGGATTCGGATTTGCTCACTGCTGCT +
Preference number: 6 (lower is better)
Translates to: GGRSPRSSCIGI*YLWDSDLLTAA
Trigger: AGCAGCAGTGAGCAAATCCGAATCCCAAAGATATCAAATTCCTATGCAAGAGGATCGGGGGCTTCTACCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 72 bp AGGAATGGGAGCAACCAGAACAGACAATGCATATCTTaGGTGGTACTCACGAGCCTCTTCTGTCCTCCGTTT +
Preference number: 6 (lower is better)
Translates to: RNGSNQNRQCIS*VVLTSLFCPPF
Trigger: AAACGGAGGACAGAAGAGGCTCGTGAGTACCACTCAAGATATGCATTGTCTGTTCTGGTTGCTCCCATTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS CCA 72 bp CTTTCTCCAGGTGTAGACAGGTCTTGGGGATGCTTTTaGCTTGCACTCAATGACAACTTCACCTCCCACTTT +
Preference number: 6 (lower is better)
Translates to: LSPGVDRSWGCF*LALNDNFTSHF
Trigger: AAAGTGGGAGGTGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCTGGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 72 bp AAGGAATGGGAGCAACCAGAACAGACAATGCATATCTaGAGTGGTACTCACGAGCCTCTTCTGTCCTCCGTT +
Preference number: 6 (lower is better)
Translates to: KEWEQPEQTMHI*SGTHEPLLSSV
Trigger: AACGGAGGACAGAAGAGGCTCGTGAGTACCACTCAAGATATGCATTGTCTGTTCTGGTTGCTCCCATTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079416.6
CDS TCA 72 bp GGTACGTTCCAGCATCTTGGGTTTTATTGGGGTTATTaGTCAACAAGCTGCCGTCAACAACACTGTAGCGGA +
Preference number: 6 (lower is better)
Translates to: GTFQHLGFYWGY*STSCRQQHCSG
Trigger: TCCGCTACAGTGTTGTTGACGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp ATTCAACCCAAGGATTCAAACCCACCACAGTTGCTGTaGATGTCTTCCCGTCGACGAGATCTGGAACTGTAT +
Preference number: 6 (lower is better)
Translates to: IQPKDSNPPQLL*MSSRRRDLELY
Trigger: ATACAGTTCCAGATCTCGTCGACGGGAAGACATTCACAGCAACTGTGGTGGGTTTGAATCCTTGGGTTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS GCA 72 bp TTCATATTCAACCCAAGGATTCAAACCCACCACAGTTaGTGTGAATGTCTTCCCGTCGACGAGATCTGGAAC +
Preference number: 6 (lower is better)
Translates to: FIFNPRIQTHHS*CECLPVDEIWN
Trigger: GTTCCAGATCTCGTCGACGGGAAGACATTCACAGCAACTGTGGTGGGTTTGAATCCTTGGGTTGAATATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 72 bp GGACCTCTTACAATCAGGTCCGCAGCAACAGAGAGTTaGTCTACACTTGTTTGGACCATGCAGACATACTTC +
Preference number: 6 (lower is better)
Translates to: GPLTIRSAATES*STLVWTMQTYF
Trigger: GAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGCGGACCTGATTGTAAGAGGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CCA 72 bp GAGTTTGTTGCTATGCACTGGTACGTTCCAGCATCTTaGGTTTTATTGGGGTTATTGATCAACAAGCTGCCG +
Preference number: 6 (lower is better)
Translates to: EFVAMHWYVPAS*VLLGLLINKLP
Trigger: CGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCAGTGCATAGCAACAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 72 bp GCTATGCACTGGTACGTTCCAGCATCTTGGGTTTTATaGGGGTTATTGATCAACAAGCTGCCGTCAACAACA +
Preference number: 6 (lower is better)
Translates to: AMHWYVPASWVL*GLLINKLPSTT
Trigger: TGTTGTTGACGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCAGTGCATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 90 bp CCAGCTGAATCCTGCCCTCCAACTCTTTCAAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGTCCATTAAATGTCCACGTAAACACA +
Preference number: 6 (lower is better)
Translates to: PAESCPPTLSKWSPS*SKSIKCPLNVHVNT
Trigger: TGTGTTTACGTGGACATTTAATGGACACTTGATAGACTTTGACAAGGATGGAGACCACTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS GCA 72 bp ACACTTGTTTGGACCATGCAGACATACTTCCCAGCATaGTTCAGTTGGATGTTTCGGATCATCAAATCACCA +
Preference number: 6 (lower is better)
Translates to: TLVWTMQTYFPA*FSWMFRIIKSP
Trigger: TGGTGATTTGATGATCCGAAACATCCAACTGAAGCATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 72 bp TCCTGCCCTCCAACTCTTTCAAAGTGGTCTCCATCCTaGTCAAAGTCTATCAAGTGTCCATTAAATGTCCAC +
Preference number: 6 (lower is better)
Translates to: SCPPTLSKWSPS*SKSIKCPLNVH
Trigger: GTGGACATTTAATGGACACTTGATAGACTTTGACAAGGATGGAGACCACTTTGAAAGAGTTGGAGGGCAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp CCATTAAATGTCCACGTAAACACAATGTCCAGGGAGTaGTCATGTGTTACCTGGCATGGAAGAACAATGCTT +
Preference number: 6 (lower is better)
Translates to: PLNVHVNTMSRE*SCVTWHGRTML
Trigger: AAGCATTGTTCTTCCATGCCAGGTAACACATGATCACTCCCTGGACATTGTGTTTACGTGGACATTTAATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS TCA 72 bp CCTGTCCCAGCTGAGTTATACGCCTTGACAGATAAGTaGTACAGAGCACTTCCTTTCAAGTTGGTGATTTTT +
Preference number: 6 (lower is better)
Translates to: PVPAELYALTDK*YRALPFKLVIF
Trigger: AAAAATCACCAACTTGAAAGGAAGTGCTCTGTATCACTTATCTGTCAAGGCGTATAACTCAGCTGGGACAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 72 bp GTAATGAAAGCTCCACTGATGTCTTGTTGGTTTCAATaGCAGATGTGCTGCTTTGCCTGTTCCATCTGTACA +
Preference number: 6 (lower is better)
Translates to: VMKAPLMSCWFQ*QMCCFACSICT
Trigger: TGTACAGATGGAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCTTTCATTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CAA 72 bp TCATCGAAAGGTAATGAAAGCTCCACTGATGTCTTGTaGGTTTCAATGACAGATGTGCTGCTTTGCCTGTTC +
Preference number: 6 (lower is better)
Translates to: SSKGNESSTDVL*VSMTDVLLCLF
Trigger: GAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCTTTCATTACCTTTCGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS CAA 72 bp TCTTCATCGAAAGGTAATGAAAGCTCCACTGATGTCTaGTTGGTTTCAATGACAGATGTGCTGCTTTGCCTG +
Preference number: 6 (lower is better)
Translates to: SSSKGNESSTDV*LVSMTDVLLCL
Trigger: CAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATCAGTGGAGCTTTCATTACCTTTCGATGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 72 bp ACATGCCAGCATCTGAGAGATTCACTATTGTTATGTTaGGTGTTCCTTGCTCGATTTGTATTCTATCCCGTG +
Preference number: 6 (lower is better)
Translates to: TCQHLRDSLLLC*VFLARFVFYPV
Trigger: CACGGGATAGAATACAAATCGAGCAAGGAACACTCAACATAACAATAGTGAATCTCTCAGATGCTGGCATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS CAA 90 bp TTCCATGGCCACGTGGATATCATTTATTATTTGAACCCAGTTAGGTaGAGCATAAAAAGTCAACTGTCCCTTGGCTACGTTTTTGCCTCT +
Preference number: 6 (lower is better)
Translates to: FHGHVDIIYYLNPVR*SIKSQLSLGYVFAS
Trigger: AGAGGCAAAAACGTAGCCAAGGGACAGTTGACTTTTTATGCTCAACCTAACTGGGTTCAAATAATAAATGATATCCACGTGGCCATGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS GCA 72 bp TCTGAGAGATTCACTATTGTTATGTTGAGTGTTCCTTaGTCGATTTGTATTCTATCCCGTGTTAACAGTGGG +
Preference number: 6 (lower is better)
Translates to: SERFTIVMLSVP*SICILSRVNSG
Trigger: CCCACTGTTAACACGGGATAGAATACAAATCGAGCAAGGAACACTCAACATAACAATAGTGAATCTCTCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000079416.6
ENSMUST00000089208.9
ENSMUST00000113258.8
ENSMUST00000113260.8
ENSMUST00000113261.9
ENSMUST00000113264.9
CDS GCA 72 bp GATGTCTTGTTGGTTTCAATGACAGATGTGCTGCTTTaGCTGTTCCATCTGTACAAGACTTTGTATCCTTTT +
Preference number: 6 (lower is better)
Translates to: DVLLVSMTDVLL*LFHLYKTLYPF
Trigger: AAAAGGATACAAAGTCTTGTACAGATGGAACAGGCAAAGCAGCACATCTGTCATTGAAACCAACAAGACATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9
CDS TCA 72 bp CAGATAAGTGATACAGAGCACTTCCTTTCAAGTTGGTaGTTTTTGTGGATGTCTGATTTCCAACTGTTCGTA +
Preference number: 6 (lower is better)
Translates to: QISDTEHFLSSW*FLWMSDFQLFV
Trigger: TACGAACAGTTGGAAATCAGACATCCACAAAAATCACCAACTTGAAAGGAAGTGCTCTGTATCACTTATCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000089208.9
ENSMUST00000113264.9