RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNTN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030075

Ensembl transcript IDs: ENSMUST00000032159.7, ENSMUST00000203619.3

Found 236 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTaGAAGACTCGACTCATCCATATCAAAGCCAGCAACATCACCATG +
Preference number: 1 (lower is better)
Translates to: LLPSHVFHSPLKITY*KTRLIHIKASNITM
Trigger: CATGGTGATGTTGCTGGCTTTGATATGGATGAGTCGAGTCTTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR TCA 90 bp ATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTaGAAATCACATATTGAAAGACTCGACTCATCCATATCAAAGCCA +
Preference number: 1 (lower is better)
Translates to: IPSTCYCQAMSSTVL*KSHIERLDSSISKP
Trigger: TGGCTTTGATATGGATGAGTCGAGTCTTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CCA 90 bp ACCTTAGTAGCTTCATGTAAGATTCTGCACAGGGACATTGCACATTaGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACAAC +
Preference number: 1 (lower is better)
Translates to: TLVASCKILHRDIAH*RKQCFPITSFVLNN
Trigger: GTTGTTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCCCTGTGCAGAATCTTACATGAAGCTACTAAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR TCA 90 bp AAAGAAACAATGTTACAATCTTCACTCAGGTTCAATTTCCATCTTTaGAGAAGAGGGATAATTCTAAGAAGAGCATGCAATGCCAGCAAG +
Preference number: 1 (lower is better)
Translates to: KETMLQSSLRFNFHL*RRGIILRRACNASK
Trigger: CTTGCTGGCATTGCATGCTCTTCTTAGAATTATCCCTCTTCTTCAAAGATGGAAATTGAACCTGAGTGAAGATTGTAACATTGTTTCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACGGCTGCCTGGCTCGATaGGATAGAGAGTGGAATTCC +
Preference number: 2 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHGCLAR*DREWNS
Trigger: GGAATTCCACTCTCTATCTCATCGAGCCAGGCAGCC...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CAA 90 bp GTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATaGAAAGACTCGACTCATCCATATCAAAGCCAGCAACATCACCAT +
Preference number: 2 (lower is better)
Translates to: VTAKPCLPQSFENHI*KDSTHPYQSQQHHH
Trigger: ATGGTGATGTTGCTGGCTTTGATATGGATGAGTCGAGTCTTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAGATGAGAGGATGAAGTaGCAAAGGGAATCTCGCAGC +
Preference number: 2 (lower is better)
Translates to: FKQRILAVKADRRNIVTSDERMK*QRESRS
Trigger: GCTGCGAGATTCCCTTTGTCACTTCATCCTCTCATC...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR TCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACAGAGTATCATTTTCTaGCAATACGCCCTTCCAGGC +
Preference number: 2 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKQSIIF*QYALPG
Trigger: GCCTGGAAGGGCGTATTGTCAGAAAATGATACTCTG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR CCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAAGGGACATTGCACATTaGAGGAAACAATGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: HVTAKPCLPQSFENHILKRDIAH*RKQCFP
Trigger: GGGAAAGCATTGTTTCCTCCAATGTGCAATGTCCCT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR CCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAATTTTACTTGGGAATaGAAAAGGCTGCCTGGCTCG +
Preference number: 2 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHNFTWE*KRLPGS
Trigger: CGAGCCAGGCAGCCTTTTCCATTCCCAAGTAAAATT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR CCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAAATTTTACTTGGGAATaGAAAAGGCTGCCTGGCTCG +
Preference number: 2 (lower is better)
Translates to: HVTAKPCLPQSFENHILKNFTWE*KRLPGS
Trigger: CGAGCCAGGCAGCCTTTTCCATTCCCAAGTAAAATT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATGCATCCTGTGTATGTaGCTCACACATAGGAAAGTG +
Preference number: 2 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKCILCM*LTHRKV
Trigger: CACTTTCCTATGTGTGAGGCACATACACAGGATGCA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAACAAGCTTCAAAGAAGTaGCTGTTCTGTGTCACCTTA +
Preference number: 2 (lower is better)
Translates to: HVTAKPCLPQSFENHILKQASKK*LFCVTL
Trigger: TAAGGTGACACAGAACAGGCACTTCTTTGAAGCTTG...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAATTCTAAGAAGAGCATaGAATGCCAGCAAGCTTCAA +
Preference number: 2 (lower is better)
Translates to: HVTAKPCLPQSFENHILKILRRA*NASKLQ
Trigger: TTGAAGCTTGCTGGCATTGCATGCTCTTCTTAGAAT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAATTCTCTACTGGGATTTaGCAAAACCTGAAAGCTTAT +
Preference number: 2 (lower is better)
Translates to: HVTAKPCLPQSFENHILKFSTGI*QNLKAY
Trigger: ATAAGCTTTCAGGTTTTGTCAAATCCCAGTAGAGAA...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCCATTGGAGGAAACAATaGTTTCCCATTACTTCCTTT +
Preference number: 2 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVHWRKQ*FPITSF
Trigger: AAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATG...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCCATACATCATGTGTaGACTGTGTTTTTATGCATC +
Preference number: 2 (lower is better)
Translates to: CFKQRILAVKADRRNIVTSIHHV*TVFLCI
Trigger: GATGCATAAAAACACAGTGCACACATGATGTATGGA...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCATCCATACATCATGTGTaGACTGTGTTTTTATGCATC +
Preference number: 2 (lower is better)
Translates to: FKQRILAVKADRRNIVTSSIHHV*TVFLCI
Trigger: GATGCATAAAAACACAGTGCACACATGATGTATGGA...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR TCA 72 bp CAAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTaGCAATACGCCCTTCCAGGCTGCTCCAGTCCAGAA +
Preference number: 3 (lower is better)
Translates to: QMSLPQAQSIIF*QYALPGCSSPE
Trigger: TTCTGGACTGGAGCAGCCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR GCA 72 bp TGTGTCTCCATACATCATGTGTGCACTGTGTTTTTATaGATCCTGTGTATGTGCCTCACACATAGGAAAGTG +
Preference number: 3 (lower is better)
Translates to: CVSIHHVCTVFL*ILCMCLTHRKV
Trigger: CACTTTCCTATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTATGGAGACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR GCA 72 bp ACCGTGTATGTACTATGTGTCTCCATACATCATGTGTaGACTGTGTTTTTATGCATCCTGTGTATGTGCCTC +
Preference number: 3 (lower is better)
Translates to: TVYVLCVSIHHV*TVFLCILCMCL
Trigger: GAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTATGGAGACACATAGTACATACACGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR-3UTR CAA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAACAGGGACATTGCACATaGGAGGAAACAATGCTTTCC +
Preference number: 3 (lower is better)
Translates to: HVTAKPCLPQSFENHILKQGHCT*EETMLS
Trigger: GGAAAGCATTGTTTCCTCCAATGTGCAATGTCCCTG...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR GCA 72 bp ATTCTGCACAGGGACATTGCACATTGGAGGAAACAATaGTTTCCCATTACTTCCTTTGTTTTAAACAACGGA +
Preference number: 3 (lower is better)
Translates to: ILHRDIAHWRKQ*FPITSFVLNNG
Trigger: TCCGTTGTTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCCCTGTGCAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR GCA 72 bp CATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTaGCTCACACATAGGAAAGTGTTTAAACTCATAACA +
Preference number: 3 (lower is better)
Translates to: HVCTVFLCILCM*LTHRKVFKLIT
Trigger: TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGCCAGGATCACCAGGCTaGCCACCTGCACCTGGACCA +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQPGSPG*PPAPGP
Trigger: TGGTCCAGGTGCAGGTGGGCAGCCTGGTGATCCTGG...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGCCTCGGAGCACAGCTaGTGTCTGATTTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRASEHS*CLISCH
Trigger: GTGGCAGGAAATCAGACATCAGCTGTGCTCCGAGGC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGCTGACCTCAGAAGGTaGGATTTCTGGAGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRADLRR*DFWSCL
Trigger: GAGGCAGCTCCAGAAATCGCACCTTCTGAGGTCAGC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGTCTGCTCACTACTGGTaGCATCCCCTCCATCTGTGG +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRSAHYW*HPLHLW
Trigger: CCACAGATGGAGGGGATGGCACCAGTAGTGAGCAGA...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGTGAACCTCTCACGATaGGCTCAGCTGCAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRVNLSR*AQLQRK
Trigger: TTTCCTCTGCAGCTGAGCTCATCGTGAGAGGTTCAC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACGAAGGGACCAGCGCCTaGGCTGTTGTAAGCCCGGAC +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHEGTSA*AVVSPD
Trigger: GTCCGGGCTTACAACAGCGCAGGCGCTGGTCCCTTC...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCGAAGGGACCAGCGCCTaGGCTGTTGTAAGCCCGGAC +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVEGTSA*AVVSPD
Trigger: GTCCGGGCTTACAACAGCGCAGGCGCTGGTCCCTTC...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCCAAACAACATTTCCTaGTGGCTGACTGGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRPNNIS*WLTGRG
Trigger: ACCCCTCCCAGTCAGCCACCAGGAAATGTTGTTTGG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATGACAGTTCTCCTGAGTaGGGTGGGGGTCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHDSSPE*GGGPQR
Trigger: TCTCTGTGGACCCCCACCTCACTCAGGAGAACTGTC...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACCAGGATCACCAGGCTaGCCACCTGCACCTGGACCA +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSPGSPG*PPAPGP
Trigger: TGGTCCAGGTGCAGGTGGGCAGCCTGGTGATCCTGG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTGTAATAGGCCAGGTTaGTCTTCAGGCCTCGGAGCA +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQCNRPG*SSGLGA
Trigger: TGCTCCGAGGCCTGAAGAGCAACCTGGCCTATTACA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCTTGGAATCCTGATCTaGTCACTACTGGTGCCATCC +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRLGILI*SLLVPS
Trigger: GGATGGCACCAGTAGTGAGCAGATCAGGATTCCAAG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGAGAAGGTGCGATTTCTaGAGCTGCCTCTTCAGTCCT +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRRRCDF*SCLFSP
Trigger: AGGACTGAAGAGGCAGCTCCAGAAATCGCACCTTCT...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGTGGTAACCCCAAGTaGGCGGAAAGCAACCACATA +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQGGNPK*AESNHI
Trigger: TATGTGGTTGCTTTCCGCCCACTTGGGGTTACCACC...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGATGTCACCACTGTCTaGATCCAGGTGGTAACCCCA +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQDVTTV*IQVVTP
Trigger: TGGGGTTACCACCTGGATCCAGACAGTGGTGACATC...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCAGCACTGGAGTAGATaGGACCATGCTTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRQHWSR*DHACFL
Trigger: CAGAAAACAAGCATGGTCTCATCTACTCCAGTGCTG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCTATGGGCAGAGATGTaGGATGGGGCAACTGTAGGC +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHLWAEM*DGATVG
Trigger: GCCTACAGTTGCCCCATCTCACATCTCTGCCCATAG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGAAAGAAAGTGCCCTTaGAGAGGCTCTGGGTTTACA +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRERKCP*RGSGFT
Trigger: TGTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGAACAACATTTCCTGGTaGCTGACTGGGAGGGGTTTT +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRNNISW*LTGRGF
Trigger: AAAACCCCTCCCAGTCAGCCACCAGGAAATGTTGTT...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CAA 72 bp GTGACAAAGGGAATCTCGCAGCCATACAGTAGCACATaGAAGCAAATGTCACTTCCCCAAGCTCAGAGTATC +
Preference number: 4 (lower is better)
Translates to: VTKGISQPYSST*KQMSLPQAQSI
Trigger: GATACTCTGAGCTTGGGGAAGTGACATTTGCTTCAATGTGCTACTGTATGGCTGCGAGATTCCCTTTGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGAGAAACTTCAATTTCTaGGGAAGACAGGCTATGGGC +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRRNFNF*GRQAMG
Trigger: GCCCATAGCCTGTCTTCCTCAGAAATTGAAGTTTCT...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAGCCTCGGAGCACAGCTaGTGTCTGATTTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKASEHS*CLISCH
Trigger: GTGGCAGGAAATCAGACATCAGCTGTGCTCCGAGGC...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCTTCCAGAAAGAAAGTaGCCTTGGAGAGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHLPERK*PWRGSG
Trigger: CCCAGAGCCTCTCCAAGGGCACTTTCTTTCTGGAAG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCAACCAAGTGGGTTGTaGCATTTGCTTTCCCAAACT +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRQPSGL*HLLSQT
Trigger: AGTTTGGGAAAGCAAATGGCACAACCCACTTGGTTG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTCTGCTCACTACTGGTaGCATCCCCTCCATCTGTGG +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVSAHYW*HPLHLW
Trigger: CCACAGATGGAGGGGATGGCACCAGTAGTGAGCAGA...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACGATATAACTGGGCTATaGCTGTCCGTGCCTTCCGTC +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHDITGL*LSVPSV
Trigger: GACGGAAGGCACGGACAGTCATAGCCCAGTTATATC...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAGATATAACTGGGCTATaGCTGTCCGTGCCTTCCGTC +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKDITGL*LSVPSV
Trigger: GACGGAAGGCACGGACAGTCATAGCCCAGTTATATC...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACTATGGGCAGAGATGTaGGATGGGGCAACTGTAGGC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSLWAEM*DGATVG
Trigger: GCCTACAGTTGCCCCATCTCACATCTCTGCCCATAG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAACATTTCCTGGTGGCTaGCTGGGAGGGGTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKTFPGG*LGGVFL
Trigger: CAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACACATTTCCTGGTGGCTaGCTGGGAGGGGTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHTFPGG*LGGVFL
Trigger: CAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGTAGCCTGTTACTTCTaGTTCATTCTCCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRVACYF*FILHGF
Trigger: AAAGCCATGGAGAATGAATCAGAAGTAACAGGCTAC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCCACGATGAGCTCAGCTaGAGAGGAAACACTGTCCAC +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVHDELS*RGNTVH
Trigger: GTGGACAGTGTTTCCTCTGCAGCTGAGCTCATCGTG...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCGCTGACCTCAGAAGGTaGGATTTCTGGAGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTADLRR*DFWSCL
Trigger: GAGGCAGCTCCAGAAATCGCACCTTCTGAGGTCAGC...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTCTGTCACAACCAAGTaGGTTGTGCCATTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQSVTTK*VVPFAF
Trigger: GAAAGCAAATGGCACAACCCACTTGGTTGTGACAGA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATGAACACAGTTGTCACTaGGCTAAAGGGTCCTTCACC +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHEHSCH*AKGSFT
Trigger: GGTGAAGGACCCTTTAGCCCAGTGACAACTGTGTTC...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCCCAAACAACATTTCCTaGTGGCTGACTGGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVPNNIS*WLTGRG
Trigger: ACCCCTCCCAGTCAGCCACCAGGAAATGTTGTTTGG...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAAGGTGTCCTGTCTCTTaGGAGACAAATCGTCGACTG +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKRCPVS*ETNRRL
Trigger: CAGTCGACGATTTGTCTCTCAAGAGACAGGACACCT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAGGTGTCCTGTCTCTTaGGAGACAAATCGTCGACTG +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHRCPVS*ETNRRL
Trigger: CAGTCGACGATTTGTCTCTCAAGAGACAGGACACCT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCAGCACTGGAGTAGATaGGACCATGCTTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHQHWSR*DHACFL
Trigger: CAGAAAACAAGCATGGTCTCATCTACTCCAGTGCTG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAGTGAACCTCTCACGATaGGCTCAGCTGCAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITVNLSR*AQLQRK
Trigger: TTTCCTCTGCAGCTGAGCTCATCGTGAGAGGTTCAC...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATAGCACAGCTGATGTCTaGTTTCCTGCCACTTTCACT +
Preference number: 4 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHSTADV*FPATFT
Trigger: AGTGAAAGTGGCAGGAAATCAGACATCAGCTGTGCT...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGTAGCCTGTTACTTCTaGTTCATTCTCCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQVACYF*FILHGF
Trigger: AAAGCCATGGAGAATGAATCAGAAGTAACAGGCTAC...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGTCCAAGAGAATTCGTTaGAAAACACTGGTAACTTCC +
Preference number: 4 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRSKRIR*KTLVTS
Trigger: GGAAGTTACCAGTGTTTTGCAACGAATTCTCTTGGA...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACTTCCAGAAAGAAAGTaGCCTTGGAGAGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKLPERK*PWRGSG
Trigger: CCCAGAGCCTCTCCAAGGGCACTTTCTTTCTGGAAG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAACCCAAACTGGTTTTCTaGTGTGCAGGTGTAGGTTCC +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKPKLVF*CAGVGS
Trigger: GGAACCTACACCTGCACAGCAGAAAACCAGTTTGGG...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCACGATGAGCTCAGCTaGAGAGGAAACACTGTCCAC +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTHDELS*RGNTVH
Trigger: GTGGACAGTGTTTCCTCTGCAGCTGAGCTCATCGTG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATGTAATAGGCCAGGTTaGTCTTCAGGCCTCGGAGCA +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKCNRPG*SSGLGA
Trigger: TGCTCCGAGGCCTGAAGAGCAACCTGGCCTATTACA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCGGGAGCCCAATACTCTaGTATTTGTCACCGTGCTGG +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTGSPIL*YLSPCW
Trigger: CCAGCACGGTGACAAATACCAGAGTATTGGGCTCCC...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAGGGAGCCCAATACTCTaGTATTTGTCACCGTGCTGG +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITGSPIL*YLSPCW
Trigger: CCAGCACGGTGACAAATACCAGAGTATTGGGCTCCC...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACCCCTTGGAGAGGCTCTaGGTTTACAATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHPLERL*VYNPGS
Trigger: TGATCCTGGATTGTAAACCCAGAGCCTCTCCAAGGG...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCGGTGGTAACCCCAAGTaGGCGGAAAGCAACCACATA +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTGGNPK*AESNHI
Trigger: TATGTGGTTGCTTTCCGCCCACTTGGGGTTACCACC...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAGATGTCACCACTGTCTaGATCCAGGTGGTAACCCCA +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKDVTTV*IQVVTP
Trigger: TGGGGTTACCACCTGGATCCAGACAGTGGTGACATC...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACTGCCAGGCAGCCAATaGATGAAAGCAGGATCAACT +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKLPGSQ*MKAGST
Trigger: AGTTGATCCTGCTTTCATTCATTGGCTGCCTGGCAG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACTGCCAGGCAGCCAATaGATGAAAGCAGGATCAACT +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSLPGSQ*MKAGST
Trigger: AGTTGATCCTGCTTTCATTCATTGGCTGCCTGGCAG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCAACCTCACAGTTaGACCTTTAGCTGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVFQPHS*TFSCWK
Trigger: CTTCCAGCAGCTAAAGGTTCAACTGTGAGGTTGGAA...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGCAGCAACAGTTCAGCTaGAGTTTTATTTGTGTTCAG +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQQQQFS*SFICVQ
Trigger: CTGAACACAAATAAAACTTCAGCTGAACTGTTGCTG...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAGATGTTAGAAATGGCTaGCGTGGATCCTCTTGCATC +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKDVRNG*RGSSCI
Trigger: GATGCAAGAGGATCCACGTCAGCCATTTCTAACATC...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTCCAAGAGAATTCGTTaGAAAACACTGGTAACTTCC +
Preference number: 4 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQSKRIR*KTLVTS
Trigger: GGAAGTTACCAGTGTTTTGCAACGAATTCTCTTGGA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAATTTAGGCTTCCCACTTaGCCGGCATTCCCAATAAAG +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKFRLPT*PAFPIK
Trigger: CTTTATTGGGAATGCCGGGCAAGTGGGAAGCCTAAA...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTTTAGGCTTCCCACTTaGCCGGCATTCCCAATAAAG +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHFRLPT*PAFPIK
Trigger: CTTTATTGGGAATGCCGGGCAAGTGGGAAGCCTAAA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAACTGGTTTTCTGCTGTaGAGGTGTAGGTTCCAGCGT +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKTGFLL*RCRFQR
Trigger: ACGCTGGAACCTACACCTGCACAGCAGAAAACCAGT...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAACTGGTTTTCTGCTGTaGAGGTGTAGGTTCCAGCGT +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSTGFLL*RCRFQR
Trigger: ACGCTGGAACCTACACCTGCACAGCAGAAAACCAGT...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACACCCAAACTGGTTTTCTaGTGTGCAGGTGTAGGTTCC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITPKLVF*CAGVGS
Trigger: GGAACCTACACCTGCACAGCAGAAAACCAGTTTGGG...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAACTGTTCTGACACTTTaGCAGCCCACAGAGAAAGGC +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKTVLTL*QPTEKG
Trigger: GCCTTTCTCTGTGGGCTGGCAAAGTGTCAGAACAGT...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACTTGGAATCCTGATCTaGTCACTACTGGTGCCATCC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSLGILI*SLLVPS
Trigger: GGATGGCACCAGTAGTGAGCAGATCAGGATTCCAAG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCCCTTGGAGAGGCTCTaGGTTTACAATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTPLERL*VYNPGS
Trigger: TGATCCTGGATTGTAAACCCAGAGCCTCTCCAAGGG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAGAAAGAAAGTGCCCTTaGAGAGGCTCTGGGTTTACA +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKERKCP*RGSGFT
Trigger: TGTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTC...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAATCCGTCCAAGAGAGCTaGGCTGTTGTGTCTGTAATT +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKSVQES*AVVSVI
Trigger: AATTACAGACACAACAGCCCAGCTCTCTTGGACGGA...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTCCGTCCAAGAGAGCTaGGCTGTTGTGTCTGTAATT +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVSVQES*AVVSVI
Trigger: AATTACAGACACAACAGCCCAGCTCTCTTGGACGGA...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCAGAAGGTGCGATTTCTaGAGCTGCCTCTTCAGTCCT +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTRRCDF*SCLFSP
Trigger: AGGACTGAAGAGGCAGCTCCAGAAATCGCACCTTCT...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCGTATCTTGGGTTATCTaGGGATGTCACCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVVSWVI*GCHHCL
Trigger: CAGACAGTGGTGACATCCCCAGATAACCCAAGATAC...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAGAACACAGTTGTCACTaGGCTAAAGGGTCCTTCACC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITEHSCH*AKGSFT
Trigger: GGTGAAGGACCCTTTAGCCCAGTGACAACTGTGTTC...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCATTCCAACCTCACAGTTaGACCTTTAGCTGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSFQPHS*TFSCWK
Trigger: CTTCCAGCAGCTAAAGGTTCAACTGTGAGGTTGGAA...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCAGCACAGCTGATGTCTaGTTTCCTGCCACTTTCACT +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTSTADV*FPATFT
Trigger: AGTGAAAGTGGCAGGAAATCAGACATCAGCTGTGCT...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTTATTCTTGGAATCCTaGTCTGCTCACTACTGGTGC +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHLFLES*SAHYWC
Trigger: GCACCAGTAGTGAGCAGATCAGGATTCCAAGAATAA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAGATGTTAGAAATGGCTaGCGTGGATCCTCTTGCATC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSDVRNG*RGSSCI
Trigger: GATGCAAGAGGATCCACGTCAGCCATTTCTAACATC...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATGGTATTTGTCACCGTaGTGGTCACCACACATGTGT +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKWYLSP*WSPHMC
Trigger: ACACATGTGTGGTGACCAGCACGGTGACAAATACCA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCATGTAGGCTCTTCCTCTaGAGAGAACACAGTTGTCAC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSCRLFL*REHSCH
Trigger: GTGACAACTGTGTTCTCTGCAGAGGAAGAGCCTACA...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACATGTAGGCTCTTCCTCTaGAGAGAACACAGTTGTCAC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITCRLFL*REHSCH
Trigger: GTGACAACTGTGTTCTCTGCAGAGGAAGAGCCTACA...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTCTGTCACAACCAAGTaGGTTGTGCCATTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHSVTTK*VVPFAF
Trigger: GAAAGCAAATGGCACAACCCACTTGGTTGTGACAGA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAGTATCTTGGGTTATCTaGGGATGTCACCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSVSWVI*GCHHCL
Trigger: CAGACAGTGGTGACATCCCCAGATAACCCAAGATAC...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACACAGGCAGCCAATGAATaGAAGCAGGATCAACTGTTT +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITQAANE*KQDQLF
Trigger: AAACAGTTGATCCTGCTTTCATTCATTGGCTGCCTG...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCAGGCAGCCAATGAATaGAAGCAGGATCAACTGTTT +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTQAANE*KQDQLF
Trigger: AAACAGTTGATCCTGCTTTCATTCATTGGCTGCCTG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAAGAAACTTCAATTTCTaGGGAAGACAGGCTATGGGC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITRNFNF*GRQAMG
Trigger: GCCCATAGCCTGTCTTCCTCAGAAATTGAAGTTTCT...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTTATTCTTGGAATCCTaGTCTGCTCACTACTGGTGC +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTLFLES*SAHYWC
Trigger: GCACCAGTAGTGAGCAGATCAGGATTCCAAGAATAA...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAAAGCCAATAAGGTTTTaGATAGTAAGTGAGCCGCCC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITKPIRF*IVSEPP
Trigger: GGGCGGCTCACTTACTATGCAAAACCTTATTGGCTT...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAAAGCCAATAAGGTTTTaGATAGTAAGTGAGCCGCCC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSKPIRF*IVSEPP
Trigger: GGGCGGCTCACTTACTATGCAAAACCTTATTGGCTT...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAGTGGGTTGTGCCATTTaGTTTCCCAAACTGGTTTTC +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSVGCAI*FPKLVF
Trigger: GAAAACCAGTTTGGGAAAGCAAATGGCACAACCCAC...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACAACCAAGTGGGTTGTaGCATTTGCTTTCCCAAACT +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKQPSGL*HLLSQT
Trigger: AGTTTGGGAAAGCAAATGGCACAACCCACTTGGTTG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCATGCGATTTCTGGAGCTaGCTCTTCAGTCCTTACTTT +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSCDFWS*LFSPYF
Trigger: AAAGTAAGGACTGAAGAGGCAGCTCCAGAAATCGCA...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTGCGATTTCTGGAGCTaGCTCTTCAGTCCTTACTTT +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTCDFWS*LFSPYF
Trigger: AAAGTAAGGACTGAAGAGGCAGCTCCAGAAATCGCA...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAATATTTGTCACCGTGCTaGTCACCACACATGTGTAAT +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKYLSPC*SPHMCN
Trigger: ATTACACATGTGTGGTGACCAGCACGGTGACAAATA...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CAA 72 bp AAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATaGAAAGACTCGACTCATCCATATCAAAGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: KPCLPQSFENHI*KDSTHPYQSQQ
Trigger: TTGCTGGCTTTGATATGGATGAGTCGAGTCTTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACATGATGGATACTCATTaGAGACCCAAGCATATGACA +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHMMDTH*RPKHMT
Trigger: TGTCATATGCTTGGGTCTTCAATGAGTATCCATCAT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACATTGTATCAATATCACTaGCATTCAGCTGCCACCTGT +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITLYQYH*HSAATC
Trigger: ACAGGTGGCAGCTGAATGGCAGTGATATTGATACAA...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTTGTATCAATATCACTaGCATTCAGCTGCCACCTGT +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTLYQYH*HSAATC
Trigger: ACAGGTGGCAGCTGAATGGCAGTGATATTGATACAA...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCCAGTAAATGTCCATTaGTCAACTTCCAGGGAATTG +
Preference number: 4 (lower is better)
Translates to: CFKQRILAVKADRRNIVTPVNVH*STSREL
Trigger: CAATTCCCTGGAAGTTGAGCAATGGACATTTACTGG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACCAGTAAATGTCCATTaGTCAACTTCCAGGGAATTG +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKPVNVH*STSREL
Trigger: CAATTCCCTGGAAGTTGAGCAATGGACATTTACTGG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATATTTGTCACCGTGCTaGTCACCACACATGTGTAAT +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKYLSPC*SPHMCN
Trigger: ATTACACATGTGTGGTGACCAGCACGGTGACAAATA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTGCTGGAAGAGTCTCTaGAAACTGGACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHCWKSL*KLDFYF
Trigger: AAAATAGAAGTCCAGTTTCCAGAGACTCTTCCAGCA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACCACTTTAACTTCATATaGCGAAAAGGGCACAATGCT +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHHFNFI*RKGHNA
Trigger: AGCATTGTGCCCTTTTCGCCATATGAAGTTAAAGTG...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAATGATGGATACTCATTaGAGACCCAAGCATATGACA +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSMMDTH*RPKHMT
Trigger: TGTCATATGCTTGGGTCTTCAATGAGTATCCATCAT...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAGTCTTCTTCAACAAATaGTGGATACTCATTGAAGAC +
Preference number: 4 (lower is better)
Translates to: HVTAKPCLPQSFENHILKVFFNK*WILIED
Trigger: GTCTTCAATGAGTATCCATCATTTGTTGAAGAAGAC...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACAGCAACAGTTCAGCTaGAGTTTTATTTGTGTTCAG +
Preference number: 4 (lower is better)
Translates to: FKQRILAVKADRRNIVTSQQQFS*SFICVQ
Trigger: CTGAACACAAATAAAACTTCAGCTGAACTGTTGCTG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACACCATGCTTGTTTTCTaGTATACATTGGAACATTCC +
Preference number: 4 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHTMLVF*YTLEHS
Trigger: GGAATGTTCCAATGTATAGCAGAAAACAAGCATGGT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACACACTTTAACTTCATATaGCGAAAAGGGCACAATGCT +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITHFNFI*RKGHNA
Trigger: AGCATTGTGCCCTTTTCGCCATATGAAGTTAAAGTG...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR TCA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACAGTCTTCTTCAACAAATaGTGGATACTCATTGAAGAC +
Preference number: 4 (lower is better)
Translates to: LCILCMCLTHRKVFKLITVFFNK*WILIED
Trigger: GTCTTCAATGAGTATCCATCATTTGTTGAAGAAGAC...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR GCA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAACCATGCTTGTTTTCTaGTATACATTGGAACATTCC +
Preference number: 4 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKTMLVF*YTLEHS
Trigger: GGAATGTTCCAATGTATAGCAGAAAACAAGCATGGT...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CAA 72 bp AATGTTACAATCTTCACTCAGGTTCAATTTCCATCTTaGAAGAAGAGGGATAATTCTAAGAAGAGCATGCAA +
Preference number: 4 (lower is better)
Translates to: NVTIFTQVQFPS*KKRDNSKKSMQ
Trigger: TTGCATGCTCTTCTTAGAATTATCCCTCTTCTTCAAAGATGGAAATTGAACCTGAGTGAAGATTGTAACATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
3UTR CAA 72 bp GGTCATAGGAAATCCACTAGTCATTCGGATTTCTTCTaGATATGTACAATATATACAGACCCTACAGAAAAA +
Preference number: 4 (lower is better)
Translates to: GHRKSTSHSDFF*ICTIYTDPTEK
Trigger: TTTTTCTGTAGGGTCTGTATATATTGTACATATCAAGAAGAAATCCGAATGACTAGTGGATTTCCTATGACC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp CGCCTGCGCTGTTGTAAGCCCGGACAGCTGTGTAATAGGCCAGGTTaGTCTTCAGGCCTCGGAGCACAGCTGATGTCTGATTTCCTGCCA +
Preference number: 5 (lower is better)
Translates to: RLRCCKPGQLCNRPG*SSGLGAQLMSDFLP
Trigger: TGGCAGGAAATCAGACATCAGCTGTGCTCCGAGGCCTGAAGAGCAACCTGGCCTATTACACAGCTGTCCGGGCTTACAACAGCGCAGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp TTTCTTGGTGGTCGCATTAACTGTGGCGCTGAAGGGACCAGCGCCTaGGCTGTTGTAAGCCCGGACAGCTGTGTAATAGGCCAGGTTGCT +
Preference number: 5 (lower is better)
Translates to: FLGGRINCGAEGTSA*AVVSPDSCVIGQVA
Trigger: AGCAACCTGGCCTATTACACAGCTGTCCGGGCTTACAACAGCGCAGGCGCTGGTCCCTTCAGCGCCACAGTTAATGCGACCACCAAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp TGCCTGCTCCCGCACCATCATGTCTCCCTTCTTCCAGAAAGAAAGTaGCCTTGGAGAGGCTCTGGGTTTACAATCCAGGATCACCAGGCT +
Preference number: 5 (lower is better)
Translates to: CLLPHHHVSLLPERK*PWRGSGFTIQDHQA
Trigger: AGCCTGGTGATCCTGGATTGTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTCTGGAAGAAGGGAGACATGATGGTGCGGGAGCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp GAGAAAGGCGTCCTAGCTTGGACTGCATACGATATAACTGGGCTATaGCTGTCCGTGCCTTCCGTCCAAGAGAGCTGGGCTGTTGTGTCT +
Preference number: 5 (lower is better)
Translates to: EKGVLAWTAYDITGL*LSVPSVQESWAVVS
Trigger: AGACACAACAGCCCAGCTCTCTTGGACGGAAGGCACGGACAGTCATAGCCCAGTTATATCGTATGCAGTCCAAGCTAGGACGCCTTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 90 bp CACCATCAGAGCGTAGCACCAAAGGGGTTGGGGAGCCCAATACTCTaGTATTTGTCACCGTGCTGGTCACCACACATGTGTAATTTCCCA +
Preference number: 5 (lower is better)
Translates to: HHQSVAPKGLGSPIL*YLSPCWSPHMCNFP
Trigger: TGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCCCTTTGGTGCTACGCTCTGATGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp GCACCAAAGGGGTTGGGGAGCCCAATACTCTGGTATTTGTCACCGTaGTGGTCACCACACATGTGTAATTTCCCACATCAGATGGTTCCA +
Preference number: 5 (lower is better)
Translates to: APKGLGSPILWYLSP*WSPHMCNFPHQMVP
Trigger: TGGAACCATCTGATGTGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCCCTTTGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp CTGAGGAACAGGGTTTCCCAGGGCGAAGCATTCCAACCTCACAGTTaGACCTTTAGCTGCTGGAAGAGTCTCTGGAAACTGGACTTCTAT +
Preference number: 5 (lower is better)
Translates to: LRNRVSQGEAFQPHS*TFSCWKSLWKLDFY
Trigger: ATAGAAGTCCAGTTTCCAGAGACTCTTCCAGCAGCTAAAGGTTCAACTGTGAGGTTGGAATGCTTCGCCCTGGGAAACCCTGTTCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 90 bp AAAGGGCACAATGCTTTCATTCCTAAAGACGTATCTTGGGTTATCTaGGGATGTCACCACTGTCTGGATCCAGGTGGTAACCCCAAGTGG +
Preference number: 5 (lower is better)
Translates to: KGHNAFIPKDVSWVI*GCHHCLDPGGNPKW
Trigger: CCACTTGGGGTTACCACCTGGATCCAGACAGTGGTGACATCCCCAGATAACCCAAGATACGTCTTTAGGAATGAAAGCATTGTGCCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp ATCTCCATTTTTCAGCCATCGATAAGAGGGTTTAGGCTTCCCACTTaGCCGGCATTCCCAATAAAGACTGTCCTCCACAGCAATTTCCAC +
Preference number: 5 (lower is better)
Translates to: ISIFQPSIRGFRLPT*PAFPIKTVLHSNFH
Trigger: GTGGAAATTGCTGTGGAGGACAGTCTTTATTGGGAATGCCGGGCAAGTGGGAAGCCTAAACCCTCTTATCGATGGCTGAAAAATGGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp ATTTTGTTGGGAAACGGCATCCCATCACTTCTTCTCCAATTAATCTaGGGAACAGGGTTTCCCAGGGCGAAGCATTCCAACCTCACAGTT +
Preference number: 5 (lower is better)
Translates to: ILLGNGIPSLLLQLI*GTGFPRAKHSNLTV
Trigger: AACTGTGAGGTTGGAATGCTTCGCCCTGGGAAACCCTGTTCCTCAGATTAATTGGAGAAGAAGTGATGGGATGCCGTTTCCCAACAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 90 bp AATTATTCTCGTAGGTTCTGTCACAACCAAGTGGGTTGTGCCATTTaGTTTCCCAAACTGGTTTTCTGCTGTGCAGGTGTAGGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: NYSRRFCHNQVGCAI*FPKLVFCCAGVGSS
Trigger: GCTGGAACCTACACCTGCACAGCAGAAAACCAGTTTGGGAAAGCAAATGGCACAACCCACTTGGTTGTGACAGAACCTACGAGAATAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 90 bp ATATGGCGAAAAGGGCACAATGCTTTCATTCCTAAAGACGTATCTTaGGTTATCTGGGGATGTCACCACTGTCTGGATCCAGGTGGTAAC +
Preference number: 5 (lower is better)
Translates to: IWRKGHNAFIPKDVS*VIWGCHHCLDPGGN
Trigger: GTTACCACCTGGATCCAGACAGTGGTGACATCCCCAGATAACCCAAGATACGTCTTTAGGAATGAAAGCATTGTGCCCTTTTCGCCATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCGTAGCACCAAAGGGGTaGGGGAGCCCAATACTCTGG +
Preference number: 5 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVVAPKG*GSPILW
Trigger: CCAGAGTATTGGGCTCCCCAACCCCTTTGGTGCTAC...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCTGACGTGGATCCTCTaGCATCCATACTGGTTATTC +
Preference number: 5 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRLTWIL*HPYWLF
Trigger: GAATAACCAGTATGGATGCAAGAGGATCCACGTCAG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp AGACAAATCGTCGACTGTCTTCTTCAACAAATGATGGATACTCATTaGAGACCCAAGCATATGACAGTTCTCCTGAGTGAGGTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: RQIVDCLLQQMMDTH*RPKHMTVLLSEVGV
Trigger: GACCCCCACCTCACTCAGGAGAACTGTCATATGCTTGGGTCTTCAATGAGTATCCATCATTTGTTGAAGAAGACAGTCGACGATTTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp CCATTGAAATACCAGGCAAACATTATGTCTAATAGGGGATCATGTTaGACCTGGCAGGGTAAAATGACGCTCTCACCAACAGCAACGTCC +
Preference number: 5 (lower is better)
Translates to: PLKYQANIMSNRGSC*TWQGKMTLSPTATS
Trigger: GGACGTTGCTGTTGGTGAGAGCGTCATTTTACCCTGCCAGGTTCAACATGATCCCCTATTAGACATAATGTTTGCCTGGTATTTCAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAGTAGCACCAAAGGGGTaGGGGAGCCCAATACTCTGG +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKVAPKG*GSPILW
Trigger: CCAGAGTATTGGGCTCCCCAACCCCTTTGGTGCTAC...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCTGGGAGGGGTTTTCTaGGTGGTCGCATTAACTGTG +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHLGGVF*VVALTV
Trigger: CACAGTTAATGCGACCACCAAGAAAACCCCTCCCAG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp ACATTATGTCTAATAGGGGATCATGTTGAACCTGGCAGGGTAAAATaGCGCTCTCACCAACAGCAACGTCCATGTTTGAAGGTGCCAAAA +
Preference number: 5 (lower is better)
Translates to: TLCLIGDHVEPGRVK*RSHQQQRPCLKVPK
Trigger: TTTTGGCACCTTCAAACATGGACGTTGCTGTTGGTGAGAGCGTCATTTTACCCTGCCAGGTTCAACATGATCCCCTATTAGACATAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 90 bp ATTGCTCAACTTCCAGGGAATTGTATTCCAAGAAACTTCAATTTCTaGGGAAGACAGGCTATGGGCAGAGATGTGAGATGGGGCAACTGT +
Preference number: 5 (lower is better)
Translates to: IAQLPGNCIPRNFNF*GRQAMGRDVRWGNC
Trigger: ACAGTTGCCCCATCTCACATCTCTGCCCATAGCCTGTCTTCCTCAGAAATTGAAGTTTCTTGGAATACAATTCCCTGGAAGTTGAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGGCCTGTATCTTCCTGTaGGAAGTTTTGAATTTCCAG +
Preference number: 5 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRACIFL*EVLNFQ
Trigger: CTGGAAATTCAAAACTTCCAACAGGAAGATACAGGC...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTCAGTCACATTGAGGTaGGTTATTGTAAGGGCACCA +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQSVTLR*VIVRAP
Trigger: TGGTGCCCTTACAATAACCAACCTCAATGTGACTGA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGCAGCAACGTCCATGTTaGAAGGTGCCAAAATTATTC +
Preference number: 5 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRQQRPC*KVPKLF
Trigger: GAATAATTTTGGCACCTTCAAACATGGACGTTGCTG...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGTCTGTAAGGGCTCCATaGAAATACCAGGCAAACATT +
Preference number: 5 (lower is better)
Translates to: NVTSPSSEYHFLTIRPSRSVRAP*KYQANI
Trigger: AATGTTTGCCTGGTATTTCAATGGAGCCCTTACAGA...CCTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAACTGTTGCTGGGCTCTTaGATAAACACAGGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: HVTAKPCLPQSFENHILKLLLGS*INTGPC
Trigger: ACAAGGCCCTGTGTTTATCAAAGAGCCCAGCAACAG...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGACAGGGAAAATACTGTaGCTGGGCTCTTTGATAAAC +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQTGKIL*LGSLIN
Trigger: GTTTATCAAAGAGCCCAGCAACAGTATTTTCCCTGT...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAAAGAAAGAAAGTGCCCTaGGAGAGGCTCTGGGTTTAC +
Preference number: 5 (lower is better)
Translates to: HVTAKPCLPQSFENHILKRKKVP*ERLWVY
Trigger: GTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTCT...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATTCACAACCAAGTGGGTaGTGCCATTTGCTTTCCCAA +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHSQPSG*CHLLSQ
Trigger: TTGGGAAAGCAAATGGCACAACCCACTTGGTTGTGA...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTCTGTAAGGGCTCCATaGAAATACCAGGCAAACATT +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQSVRAP*KYQANI
Trigger: AATGTTTGCCTGGTATTTCAATGGAGCCCTTACAGA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATGTAGCTGTATGTGTCTaGCCATCAATGACCTCAGGT +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHVAVCV*PSMTSG
Trigger: ACCTGAGGTCATTGATGGCAAGACACATACAGCTAC...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCTGGGAGGGGTTTTCTaGGTGGTCGCATTAACTGTG +
Preference number: 5 (lower is better)
Translates to: CFKQRILAVKADRRNIVTLGGVF*VVALTV
Trigger: CACAGTTAATGCGACCACCAAGAAAACCCCTCCCAG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCTGTTGCTGGGCTCTTaGATAAACACAGGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: CFKQRILAVKADRRNIVTLLLGS*INTGPC
Trigger: ACAAGGCCCTGTGTTTATCAAAGAGCCCAGCAACAG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGAATGATGGATACTCATaGAAGACCCAAGCATATGAC +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQNDGYS*KTQAYD
Trigger: GTCATATGCTTGGGTCTTCAATGAGTATCCATCATT...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCCAGAGTCAGTCACATaGAGGTTGGTTATTGTAAGG +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHPESVT*RLVIVR
Trigger: CCTTACAATAACCAACCTCAATGTGACTGACTCTGG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGGTTTTCTGCTATACATaGGAACATTCCAGAGTCAGT +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQVFCYT*EHSRVS
Trigger: ACTGACTCTGGAATGTTCCAATGTATAGCAGAAAAC...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCAAGAAAGAAAGTGCCCTaGGAGAGGCTCTGGGTTTAC +
Preference number: 5 (lower is better)
Translates to: FKQRILAVKADRRNIVTSRKKVP*ERLWVY
Trigger: GTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTCT...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACGTAGCTGTATGTGTCTaGCCATCAATGACCTCAGGT +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHVAVCV*PSMTSG
Trigger: ACCTGAGGTCATTGATGGCAAGACACATACAGCTAC...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTCTCCACCTCCGATTTaGTTACTGGCTACAATGCGA +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHSPPPI*LLATMR
Trigger: TCGCATTGTAGCCAGTAACAAAATCGGAGGTGGAGA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATCCCAGTAAATGTCCATaGCTCAACTTCCAGGGAATT +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHPSKCP*LNFQGI
Trigger: AATTCCCTGGAAGTTGAGCAATGGACATTTACTGGG...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp AAATGTCACTTCCCCAAGCTCAGAGTATCATTTTCTGACAATACGCCCTTCCAGTTCCTGTTGGAAGTTTaGAATTTCCAGCATACCATT +
Preference number: 5 (lower is better)
Translates to: KCHFPKLRVSFSDNTPFQFLLEV*NFQHTI
Trigger: AATGGTATGCTGGAAATTCAAAACTTCCAACAGGAA...CTGGAAGGGCGTATTGTCAGAAAATGATACTCTGAGCTTGGGGAAGTGACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATACATCATGTGTGCACTGTGTTTTTATGCATCCTGTGTATGTGCCTCACACATGCCTGTATCTTCCTGTaGGAAGTTTTGAATTTCCAG +
Preference number: 5 (lower is better)
Translates to: IHHVCTVFLCILCMCLTHACIFL*EVLNFQ
Trigger: CTGGAAATTCAAAACTTCCAACAGGAAGATACAGGC...ATGTGTGAGGCACATACACAGGATGCATAAAAACACAGTGCACACATGATGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACTCAGTCACATTGAGGTaGGTTATTGTAAGGGCACCA +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHSVTLR*VIVRAP
Trigger: TGGTGCCCTTACAATAACCAACCTCAATGTGACTGA...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATCACAACCAAGTGGGTaGTGCCATTTGCTTTCCCAA +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKSQPSG*CHLLSQ
Trigger: TTGGGAAAGCAAATGGCACAACCCACTTGGTTGTGA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TTATGCATCCTGTGTATGTGCCTCACACATAGGAAAGTGTTTAAACTCATAACATCTCCACCTCCGATTTaGTTACTGGCTACAATGCGA +
Preference number: 5 (lower is better)
Translates to: LCILCMCLTHRKVFKLITSPPPI*LLATMR
Trigger: TCGCATTGTAGCCAGTAACAAAATCGGAGGTGGAGA...TGTTATGAGTTTAAACACTTTCCTATGTGTGAGGCACATACACAGGATGCATAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACCCCAGTAAATGTCCATaGCTCAACTTCCAGGGAATT +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHPSKCP*LNFQGI
Trigger: AATTCCCTGGAAGTTGAGCAATGGACATTTACTGGG...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCTCACTGACGTGGATCCTCTaGCATCCATACTGGTTATTC +
Preference number: 5 (lower is better)
Translates to: FKQRILAVKADRRNIVTSLTWIL*HPYWLF
Trigger: GAATAACCAGTATGGATGCAAGAGGATCCACGTCAG...TGAGGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAACGATGGTCCAGACTaGTATCAATATCACTGCCAT +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHNDGPD*YQYHCH
Trigger: ATGGCAGTGATATTGATACAAGTCTGGACCATCGTT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCCTTCTCTGCTCACTATaGTTCCAAGAGAATTCGTTG +
Preference number: 5 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVLLCSL*FQENSL
Trigger: CAACGAATTCTCTTGGAACAATAGTGAGCAGAGAAG...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCTCAACTTAATTTaGTTGGGAAACGGCATCCCA +
Preference number: 5 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVFLNLI*LGNGIP
Trigger: TGGGATGCCGTTTCCCAACAAAATTAAGTTGAGGAA...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CATGTTACTGCCAAGCCATGTCTTCCACAGTCCTTTGAAAATCACATATTGAAATTCCTCAACTTAATTTaGTTGGGAAACGGCATCCCA +
Preference number: 5 (lower is better)
Translates to: HVTAKPCLPQSFENHILKFLNLI*LGNGIP
Trigger: TGGGATGCCGTTTCCCAACAAAATTAAGTTGAGGAA...TTTCAATATGTGATTTTCAAAGGACTGTGGAAGACATGGCTTGGCAGTAACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAAGTGGGTTGTGCCATTaGCTTTCCCAAACTGGTTTT +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKSGLCH*LSQTGF
Trigger: AAAACCAGTTTGGGAAAGCAAATGGCACAACCCACT...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCAGTGGGTTGTGCCATTaGCTTTCCCAAACTGGTTTT +
Preference number: 5 (lower is better)
Translates to: CFKQRILAVKADRRNIVTSGLCH*LSQTGF
Trigger: AAAACCAGTTTGGGAAAGCAAATGGCACAACCCACT...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp CACTCAATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCCAGCTGAAGTTTTATTaGTGTTCAGCACGTGCACAT +
Preference number: 5 (lower is better)
Translates to: HSICYFSYTFYMLLPSHVQLKFY*CSARAH
Trigger: ATGTGCACGTGCTGAACACAAATAAAACTTCAGCTG...GACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGATTGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAAACAGGGAAAATACTGTaGCTGGGCTCTTTGATAAAC +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKTGKIL*LGSLIN
Trigger: GTTTATCAAAGAGCCCAGCAACAGTATTTTCCCTGT...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp TGTTTTAAACAACGGATTCTTGCAGTAAAGGCTGATAGGAGAAATATTGTCACCCTTCTCTGCTCACTATaGTTCCAAGAGAATTCGTTG +
Preference number: 5 (lower is better)
Translates to: CFKQRILAVKADRRNIVTLLCSL*FQENSL
Trigger: CAACGAATTCTCTTGGAACAATAGTGAGCAGAGAAG...GGTGACAATATTTCTCCTATCAGCCTTTACTGCAAGAATCCGTTGTTTAAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAATGATGGATACTCATaGAAGACCCAAGCATATGAC +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHNDGYS*KTQAYD
Trigger: GTCATATGCTTGGGTCTTCAATGAGTATCCATCATT...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp ATCTGCTATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACGTTTTCTGCTATACATaGGAACATTCCAGAGTCAGT +
Preference number: 5 (lower is better)
Translates to: ICYFSYTFYMLLPSHVFHVFCYT*EHSRVS
Trigger: ACTGACTCTGGAATGTTCCAATGTATAGCAGAAAAC...GTGGAAGACATGGCTTGGCAGTAACATGTAGAAGGTATATGAAAAATAGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACAGCAACGTCCATGTTaGAAGGTGCCAAAATTATTC +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKQQRPC*KVPKLF
Trigger: GAATAATTTTGGCACCTTCAAACATGGACGTTGCTG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAACAGCTGAAGTTTTATTaGTGTTCAGCACGTGCACAT +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKQLKFY*CSARAH
Trigger: ATGTGCACGTGCTGAACACAAATAAAACTTCAGCTG...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS-3UTR CAA 90 bp GGACATTGCACATTGGAGGAAACAATGCTTTCCCATTACTTCCTTTGTTTTAAATTCCTGTTGGAAGTTTaGAATTTCCAGCATACCATT +
Preference number: 5 (lower is better)
Translates to: GHCTLEETMLSHYFLCFKFLLEV*NFQHTI
Trigger: AATGGTATGCTGGAAATTCAAAACTTCCAACAGGAA...TTTAAAACAAAGGAAGTAATGGGAAAGCATTGTTTCCTCCAATGTGCAATGTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp GGTCGCATTAACTGTGGCGCTGAAGGGACCAGCGCCTaGGCTGTTGTAAGCCCGGACAGCTGTGTAATAGGC +
Preference number: 6 (lower is better)
Translates to: GRINCGAEGTSA*AVVSPDSCVIG
Trigger: GCCTATTACACAGCTGTCCGGGCTTACAACAGCGCAGGCGCTGGTCCCTTCAGCGCCACAGTTAATGCGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp TGTCACCACTGTCTGGATCCAGGTGGTAACCCCAAGTaGGCGGAAAGCAACCACATACCCAAAACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: CHHCLDPGGNPK*AESNHIPKTSS
Trigger: GGAGGAGGTTTTGGGTATGTGGTTGCTTTCCGCCCACTTGGGGTTACCACCTGGATCCAGACAGTGGTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp TCATTGAAGACCCAAGCATATGACAGTTCTCCTGAGTaGGGTGGGGGTCCACAGAGAAGCACCACTCCCTGG +
Preference number: 6 (lower is better)
Translates to: SLKTQAYDSSPE*GGGPQRSTTPW
Trigger: CCAGGGAGTGGTGCTTCTCTGTGGACCCCCACCTCACTCAGGAGAACTGTCATATGCTTGGGTCTTCAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp GTCCTAGCTTGGACTGCATACGATATAACTGGGCTATaGCTGTCCGTGCCTTCCGTCCAAGAGAGCTGGGCT +
Preference number: 6 (lower is better)
Translates to: VLAWTAYDITGL*LSVPSVQESWA
Trigger: AGCCCAGCTCTCTTGGACGGAAGGCACGGACAGTCATAGCCCAGTTATATCGTATGCAGTCCAAGCTAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp ATAGGCCAGGTTGCTCTTCAGGCCTCGGAGCACAGCTaGTGTCTGATTTCCTGCCACTTTCACTTTGCGGGA +
Preference number: 6 (lower is better)
Translates to: IGQVALQASEHS*CLISCHFHFAG
Trigger: TCCCGCAAAGTGAAAGTGGCAGGAAATCAGACATCAGCTGTGCTCCGAGGCCTGAAGAGCAACCTGGCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp AGCGTAGCACCAAAGGGGTTGGGGAGCCCAATACTCTaGTATTTGTCACCGTGCTGGTCACCACACATGTGT +
Preference number: 6 (lower is better)
Translates to: SVAPKGLGSPIL*YLSPCWSPHMC
Trigger: ACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCCCTTTGGTGCTACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp CTTGCCATCAATGACCTCAGGTACTGTTCTGACACTTaGCCAGCCCACAGAGAAAGGCGTCCTAGCTTGGAC +
Preference number: 6 (lower is better)
Translates to: LAINDLRYCSDT*PAHRERRPSLD
Trigger: GTCCAAGCTAGGACGCCTTTCTCTGTGGGCTGGCAAAGTGTCAGAACAGTACCTGAGGTCATTGATGGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 90 bp CAGAGCGTAGCACCAAAGGGGTTGGGGAGCCCAATACTCTGGTATTaGTCACCGTGCTGGTCACCACACATGTGTAATTTCCCACATCAG +
Preference number: 6 (lower is better)
Translates to: QSVAPKGLGSPILWY*SPCWSPHMCNFPHQ
Trigger: CTGATGTGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCCCTTTGGTGCTACGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp AGGGTTTCCCAGGGCGAAGCATTCCAACCTCACAGTTaGACCTTTAGCTGCTGGAAGAGTCTCTGGAAACTG +
Preference number: 6 (lower is better)
Translates to: RVSQGEAFQPHS*TFSCWKSLWKL
Trigger: CAGTTTCCAGAGACTCTTCCAGCAGCTAAAGGTTCAACTGTGAGGTTGGAATGCTTCGCCCTGGGAAACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp AGGTTGCTCTTCAGGCCTCGGAGCACAGCTGATGTCTaGTTTCCTGCCACTTTCACTTTGCGGGATGATTCT +
Preference number: 6 (lower is better)
Translates to: RLLFRPRSTADV*FPATFTLRDDS
Trigger: AGAATCATCCCGCAAAGTGAAAGTGGCAGGAAATCAGACATCAGCTGTGCTCCGAGGCCTGAAGAGCAACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp GGGTTGGGGAGCCCAATACTCTGGTATTTGTCACCGTaGTGGTCACCACACATGTGTAATTTCCCACATCAG +
Preference number: 6 (lower is better)
Translates to: GLGSPILWYLSP*WSPHMCNFPHQ
Trigger: CTGATGTGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp TTTCAGCCATCGATAAGAGGGTTTAGGCTTCCCACTTaGCCGGCATTCCCAATAAAGACTGTCCTCCACAGC +
Preference number: 6 (lower is better)
Translates to: FQPSIRGFRLPT*PAFPIKTVLHS
Trigger: GCTGTGGAGGACAGTCTTTATTGGGAATGCCGGGCAAGTGGGAAGCCTAAACCCTCTTATCGATGGCTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp CCGCACCATCATGTCTCCCTTCTTCCAGAAAGAAAGTaGCCTTGGAGAGGCTCTGGGTTTACAATCCAGGAT +
Preference number: 6 (lower is better)
Translates to: PHHHVSLLPERK*PWRGSGFTIQD
Trigger: ATCCTGGATTGTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTCTGGAAGAAGGGAGACATGATGGTGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp TTGCCATCAATGACCTCAGGTACTGTTCTGACACTTTaGCAGCCCACAGAGAAAGGCGTCCTAGCTTGGACT +
Preference number: 6 (lower is better)
Translates to: LPSMTSGTVLTL*QPTEKGVLAWT
Trigger: AGTCCAAGCTAGGACGCCTTTCTCTGTGGGCTGGCAAAGTGTCAGAACAGTACCTGAGGTCATTGATGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp GCACCAAAGGGGTTGGGGAGCCCAATACTCTGGTATTaGTCACCGTGCTGGTCACCACACATGTGTAATTTC +
Preference number: 6 (lower is better)
Translates to: APKGLGSPILWY*SPCWSPHMCNF
Trigger: GAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAACCCCTTTGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 90 bp TGTATGTGTCTTGCCATCAATGACCTCAGGTACTGTTCTGACACTTaGCCAGCCCACAGAGAAAGGCGTCCTAGCTTGGACTGCATACGA +
Preference number: 6 (lower is better)
Translates to: CMCLAINDLRYCSDT*PAHRERRPSLDCIR
Trigger: TCGTATGCAGTCCAAGCTAGGACGCCTTTCTCTGTGGGCTGGCAAAGTGTCAGAACAGTACCTGAGGTCATTGATGGCAAGACACATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp GGAAACGGCATCCCATCACTTCTTCTCCAATTAATCTaGGGAACAGGGTTTCCCAGGGCGAAGCATTCCAAC +
Preference number: 6 (lower is better)
Translates to: GNGIPSLLLQLI*GTGFPRAKHSN
Trigger: GTTGGAATGCTTCGCCCTGGGAAACCCTGTTCCTCAGATTAATTGGAGAAGAAGTGATGGGATGCCGTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp AATTTCATCTACCTTCACATTTTCCGGTGGCCCAGGTaGACCTCTCACGATGAGCTCAGCTGCAGAGGAAAC +
Preference number: 6 (lower is better)
Translates to: NFIYLHIFRWPR*TSHDELSCRGN
Trigger: GTTTCCTCTGCAGCTGAGCTCATCGTGAGAGGTTCACCTGGGCCACCGGAAAATGTGAAGGTAGATGAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp CACTTTAGTGTCTGTAGCATTCCAAACAACATTTCCTaGTGGCTGACTGGGAGGGGTTTTCTTGGTGGTCGC +
Preference number: 6 (lower is better)
Translates to: HFSVCSIPNNIS*WLTGRGFLGGR
Trigger: GCGACCACCAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGTTGTTTGGAATGCTACAGACACTAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 90 bp TATTCCACCCATGGGTTTAACTCCACGACAGTAGCTGTATGTGTCTaGCCATCAATGACCTCAGGTACTGTTCTGACACTTTGCCAGCCC +
Preference number: 6 (lower is better)
Translates to: YSTHGFNSTTVAVCV*PSMTSGTVLTLCQP
Trigger: GGGCTGGCAAAGTGTCAGAACAGTACCTGAGGTCATTGATGGCAAGACACATACAGCTACTGTCGTGGAGTTAAACCCATGGGTGGAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp GTGTCTGTAGCATTCCAAACAACATTTCCTGGTGGCTaGCTGGGAGGGGTTTTCTTGGTGGTCGCATTAACT +
Preference number: 6 (lower is better)
Translates to: VSVAFQTTFPGG*LGGVFLVVALT
Trigger: AGTTAATGCGACCACCAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGTTGTTTGGAATGCTACAGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp CGTAGGTTCTGTCACAACCAAGTGGGTTGTGCCATTTaGTTTCCCAAACTGGTTTTCTGCTGTGCAGGTGTA +
Preference number: 6 (lower is better)
Translates to: RRFCHNQVGCAI*FPKLVFCCAGV
Trigger: TACACCTGCACAGCAGAAAACCAGTTTGGGAAAGCAAATGGCACAACCCACTTGGTTGTGACAGAACCTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp TTGGGGAGCCCAATACTCTGGTATTTGTCACCGTGCTaGTCACCACACATGTGTAATTTCCCACATCAGATG +
Preference number: 6 (lower is better)
Translates to: LGSPILWYLSPC*SPHMCNFPHQM
Trigger: CATCTGATGTGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp CTAATAGGGGATCATGTTGAACCTGGCAGGGTAAAATaGCGCTCTCACCAACAGCAACGTCCATGTTTGAAG +
Preference number: 6 (lower is better)
Translates to: LIGDHVEPGRVK*RSHQQQRPCLK
Trigger: CTTCAAACATGGACGTTGCTGTTGGTGAGAGCGTCATTTTACCCTGCCAGGTTCAACATGATCCCCTATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp TTTAGTGTCTGTAGCATTCCAAACAACATTTCCTGGTaGCTGACTGGGAGGGGTTTTCTTGGTGGTCGCATT +
Preference number: 6 (lower is better)
Translates to: FSVCSIPNNISW*LTGRGFLGGRI
Trigger: AATGCGACCACCAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGTTGTTTGGAATGCTACAGACACTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp GTTTGTAACGATGGTCCAGACTTGTATCAATATCACTaGCATTCAGCTGCCACCTGTAATGAGGTGAAGGGT +
Preference number: 6 (lower is better)
Translates to: VCNDGPDLYQYH*HSAATCNEVKG
Trigger: ACCCTTCACCTCATTACAGGTGGCAGCTGAATGGCAGTGATATTGATACAAGTCTGGACCATCGTTACAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp CTGCCTCTTCAGTCCTTACTTTTTCTGAGGGTAAACTaGGTTCTCCACCTCCGATTTTGTTACTGGCTACAA +
Preference number: 6 (lower is better)
Translates to: LPLQSLLFLRVN*VLHLRFCYWLQ
Trigger: TTGTAGCCAGTAACAAAATCGGAGGTGGAGAACCCAGTTTACCCTCAGAAAAAGTAAGGACTGAAGAGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp AATGCTTTCATTCCTAAAGACGTATCTTGGGTTATCTaGGGATGTCACCACTGTCTGGATCCAGGTGGTAAC +
Preference number: 6 (lower is better)
Translates to: NAFIPKDVSWVI*GCHHCLDPGGN
Trigger: GTTACCACCTGGATCCAGACAGTGGTGACATCCCCAGATAACCCAAGATACGTCTTTAGGAATGAAAGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp AAAGGGCACAATGCTTTCATTCCTAAAGACGTATCTTaGGTTATCTGGGGATGTCACCACTGTCTGGATCCA +
Preference number: 6 (lower is better)
Translates to: KGHNAFIPKDVS*VIWGCHHCLDP
Trigger: TGGATCCAGACAGTGGTGACATCCCCAGATAACCCAAGATACGTCTTTAGGAATGAAAGCATTGTGCCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CCA 72 bp TGTAGGCTCTTCCTCTGCAGAGAACACAGTTGTCACTaGGCTAAAGGGTCCTTCACCTTTGTTATTGTAAAC +
Preference number: 6 (lower is better)
Translates to: CRLFLCREHSCH*AKGSFTFVIVN
Trigger: GTTTACAATAACAAAGGTGAAGGACCCTTTAGCCCAGTGACAACTGTGTTCTCTGCAGAGGAAGAGCCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp CATGGGTTTAACTCCACGACAGTAGCTGTATGTGTCTaGCCATCAATGACCTCAGGTACTGTTCTGACACTT +
Preference number: 6 (lower is better)
Translates to: HGFNSTTVAVCV*PSMTSGTVLTL
Trigger: AAGTGTCAGAACAGTACCTGAGGTCATTGATGGCAAGACACATACAGCTACTGTCGTGGAGTTAAACCCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp TACCAGGCAAACATTATGTCTAATAGGGGATCATGTTaGACCTGGCAGGGTAAAATGACGCTCTCACCAACA +
Preference number: 6 (lower is better)
Translates to: YQANIMSNRGSC*TWQGKMTLSPT
Trigger: TGTTGGTGAGAGCGTCATTTTACCCTGCCAGGTTCAACATGATCCCCTATTAGACATAATGTTTGCCTGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp TCCAGTACCGCACCTCATAGCCCAGTAAATGTCCATTaGTCAACTTCCAGGGAATTGTATTCCAAGAAACTT +
Preference number: 6 (lower is better)
Translates to: SSTAPHSPVNVH*STSRELYSKKL
Trigger: AAGTTTCTTGGAATACAATTCCCTGGAAGTTGAGCAATGGACATTTACTGGGCTATGAGGTGCGGTACTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp GATTTCCTCCATTCAGTTTGTAACGATGGTCCAGACTaGTATCAATATCACTGCCATTCAGCTGCCACCTGT +
Preference number: 6 (lower is better)
Translates to: DFLHSVCNDGPD*YQYHCHSAATC
Trigger: ACAGGTGGCAGCTGAATGGCAGTGATATTGATACAAGTCTGGACCATCGTTACAAACTGAATGGAGGAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp TGGTTCCACCTTAGCTATGTAGAGGTGTCCTGTCTCTaGAGAGACAAATCGTCGACTGTCTTCTTCAACAAA +
Preference number: 6 (lower is better)
Translates to: WFHLSYVEVSCL*RDKSSTVFFNK
Trigger: TTTGTTGAAGAAGACAGTCGACGATTTGTCTCTCAAGAGACAGGACACCTCTACATAGCTAAGGTGGAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp GTCGACTGTCTTCTTCAACAAATGATGGATACTCATTaGAGACCCAAGCATATGACAGTTCTCCTGAGTGAG +
Preference number: 6 (lower is better)
Translates to: VDCLLQQMMDTH*RPKHMTVLLSE
Trigger: CTCACTCAGGAGAACTGTCATATGCTTGGGTCTTCAATGAGTATCCATCATTTGTTGAAGAAGACAGTCGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp GGCTTCTCTGCTCACTATTGTTCCAAGAGAATTCGTTaGAAAACACTGGTAACTTCCTGTATCCCAATTTCT +
Preference number: 6 (lower is better)
Translates to: GFSAHYCSKRIR*KTLVTSCIPIS
Trigger: AGAAATTGGGATACAGGAAGTTACCAGTGTTTTGCAACGAATTCTCTTGGAACAATAGTGAGCAGAGAAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp TCTGAATCAACAGGGAAAATACTGTTGCTGGGCTCTTaGATAAACACAGGGCCTTGTAAAAGAAGTTCACCT +
Preference number: 6 (lower is better)
Translates to: SESTGKILLLGS*INTGPCKRSSP
Trigger: AGGTGAACTTCTTTTACAAGGCCCTGTGTTTATCAAAGAGCCCAGCAACAGTATTTTCCCTGTTGATTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS TCA 72 bp GCTAGTCCTATAGAAAACCTTGTAGCCTGTTACTTCTaGTTCATTCTCCATGGCTTTCACTTGTTCCCAATT +
Preference number: 6 (lower is better)
Translates to: ASPIENLVACYF*FILHGFHLFPI
Trigger: AATTGGGAACAAGTGAAAGCCATGGAGAATGAATCAGAAGTAACAGGCTACAAGGTTTTCTATAGGACTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp ATTTCCAGCATACCATTGAACTTCCTCAACTTAATTTaGTTGGGAAACGGCATCCCATCACTTCTTCTCCAA +
Preference number: 6 (lower is better)
Translates to: ISSIPLNFLNLI*LGNGIPSLLLQ
Trigger: TTGGAGAAGAAGTGATGGGATGCCGTTTCCCAACAAAATTAAGTTGAGGAAGTTCAATGGTATGCTGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS GCA 72 bp AATTTTCAAGATAGGCAAACTGGAGTTTGGCTTCTCTaGTCACTATTGTTCCAAGAGAATTCGTTGCAAAAC +
Preference number: 6 (lower is better)
Translates to: NFQDRQTGVWLL*SLLFQENSLQN
Trigger: GTTTTGCAACGAATTCTCTTGGAACAATAGTGAGCAGAGAAGCCAAACTCCAGTTTGCCTATCTTGAAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3
CDS CAA 72 bp TTCAGCAATACACTCATAGGAGCCTGTATCTTCCTGTaGGAAGTTTTGAATTTCCAGCATACCATTGAACTT +
Preference number: 6 (lower is better)
Translates to: FSNTLIGACIFL*EVLNFQHTIEL
Trigger: AAGTTCAATGGTATGCTGGAAATTCAAAACTTCCAACAGGAAGATACAGGCTCCTATGAGTGTATTGCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032159.7
ENSMUST00000203619.3