RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNTN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053024

Ensembl transcript IDs: ENSMUST00000086521.11, ENSMUST00000188065.7, ENSMUST00000188943.2, ENSMUST00000189528.7

Found 469 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCCACCGGGGTGGTaGATGGGCTTCAGTCTGGTGCCCCTTTCCATCAGGTGGTGTAGC +
Preference number: 1 (lower is better)
Translates to: AGMAVLAERAVPPGW*MGFSLVPLSIRWCS
Trigger: GCTACACCACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp CCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTaGCACCGGGGTGGTGAATGGGCTTCAGTCTGGTGCCCCTTTCCA +
Preference number: 1 (lower is better)
Translates to: PSGGWQGWQCWLRGQ*HRGGEWASVWCPFP
Trigger: TGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp AGCCACCTCAAGTGGCCCTGTCACTCCACCATTCCATCTGGAGGATaGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCCACCGGGGT +
Preference number: 1 (lower is better)
Translates to: SHLKWPCHSTIPSGG*QGWQCWLRGQCHRG
Trigger: ACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACAGGGCCACTTGAGGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp GCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGAGAGATaGGAGATGGCAGTGCCCACTTGTGGCCCCAGAGGGCCATCCACT +
Preference number: 1 (lower is better)
Translates to: AAHVPAGPGTLIPER*EMAVPTCGPRGPST
Trigger: AGTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp CCCTGTCACTCCACCATTCCATCTGGAGGATGGCAGGGATGGCAGTaGTGGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATGGGCTTCA +
Preference number: 1 (lower is better)
Translates to: PCHSTIPSGGWQGWQ*WLRGQCHRGGEWAS
Trigger: TGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp GGATGGCAGTGCTGGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATaGGCTTCAGTCTGGTGCCCCTTTCCATCAGGTGGTGTAGCCTCT +
Preference number: 1 (lower is better)
Translates to: GWQCWLRGQCHRGGE*ASVWCPFPSGGVAS
Trigger: AGAGGCTACACCACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp AAGTGGCCCTGTCACTCCACCATTCCATCTGGAGGATGGCAGGGATaGCAGTGCTGGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATGG +
Preference number: 1 (lower is better)
Translates to: KWPCHSTIPSGGWQG*QCWLRGQCHRGGEW
Trigger: CCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACAGGGCCACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp ATCCCTGCCCCATCGCCTCCCGACTTCCCCACTGTCTGGGTCACCTaGTGCCCTGGATGGCAGAGCCACTCATTTGTACCATCAGATGGC +
Preference number: 1 (lower is better)
Translates to: IPAPSPPDFPTVWVT*CPGWQSHSFVPSDG
Trigger: GCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGATGGGGCAGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp TGTCACTCCACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTaGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATGGGCTTCAGTC +
Preference number: 1 (lower is better)
Translates to: CHSTIPSGGWQGWQC*LRGQCHRGGEWASV
Trigger: GACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp AGGCTTCTCATCCCTGCCCCATCGCCTCCCGACTTCCCCACTGTCTaGGTCACCTGCTGCCCTGGATGGCAGAGCCACTCATTTGTACCA +
Preference number: 1 (lower is better)
Translates to: RLLIPAPSPPDFPTV*VTCCPGWQSHSFVP
Trigger: TGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGATGGGGCAGGGATGAGAAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 90 bp GTTTCCAGGGCCTGCAGTTATGGGAGGAGGAGGCAGGCACAAGTCTaGAGCAGAGCTGAAGGGAAGAGCACGGCATTCAGATGGGCGTCG +
Preference number: 1 (lower is better)
Translates to: VSRACSYGRRRQAQV*SRAEGKSTAFRWAS
Trigger: CGACGCCCATCTGAATGCCGTGCTCTTCCCTTCAGCTCTGCTGCAGACTTGTGCCTGCCTCCTCCTCCCATAACTGCAGGCCCTGGAAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp AGGCCCGAGCCAAATCCCAGCCAGCATAGGATGGGGAGGGAGGGATaGTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATG +
Preference number: 1 (lower is better)
Translates to: RPEPNPSQHRMGREG*WTISGVHGRENDHM
Trigger: CATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTCCCTCCCCATCCTATGCTGGCTGGGATTTGGCTCGGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 90 bp ACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTaGCCCATCGCCTCCCGACTTCCCCACTGTCTGGGTCACCTGCTG +
Preference number: 1 (lower is better)
Translates to: TLASFSPVHGQASHP*PIASRLPHCLGHLL
Trigger: CAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGATGGGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 90 bp CTGCTGGGCCTGGGACTCTCATCCCAGAGAGATGAGAGATGGCAGTaGCCACTTGTGGCCCCAGAGGGCCATCCACTTGATCTGAAGATG +
Preference number: 1 (lower is better)
Translates to: LLGLGLSSQRDERWQ*PLVAPEGHPLDLKM
Trigger: CATCTTCAGATCAAGTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp ATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGAGAGATGAGAGATaGCAGTGCCCACTTGTGGCCCCAGAGGGCCATCCACTTGATCTG +
Preference number: 1 (lower is better)
Translates to: MFLLGLGLSSQRDER*QCPLVAPEGHPLDL
Trigger: CAGATCAAGTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp TGGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATGGGCTTCAGTCTaGTGCCCCTTTCCATCAGGTGGTGTAGCCTCTCAACCCTTTAGA +
Preference number: 1 (lower is better)
Translates to: WLRGQCHRGGEWASV*CPFPSGGVASQPFR
Trigger: TCTAAAGGGTTGAGAGGCTACACCACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp GTAAACTACAGAAATGGCCCAAGGAACAGCAGGGCAAGCGCCTCTTaGAACGCCTGCTCTGCTGCTCTCACGGGCTCAGGGCATGGACAC +
Preference number: 1 (lower is better)
Translates to: VNYRNGPRNSRASAS*NACSAALTGSGHGH
Trigger: GTGTCCATGCCCTGAGCCCGTGAGAGCAGCAGAGCAGGCGTTTCAAGAGGCGCTTGCCCTGCTGTTCCTTGGGCCATTTCTGTAGTTTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp TCGCCTCCCGACTTCCCCACTGTCTGGGTCACCTGCTGCCCTGGATaGCAGAGCCACTCATTTGTACCATCAGATGGCAATGAGCAGTGT +
Preference number: 1 (lower is better)
Translates to: SPPDFPTVWVTCCPG*QSHSFVPSDGNEQC
Trigger: ACACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp GCTAGCCACGCTGAGCTCTTGGCTAGAGTACGGGCTAGGATGCGCTaGGGAAGGCACGACTTTGTAAGGACTGTTCTGGGGATCATTCCC +
Preference number: 1 (lower is better)
Translates to: ASHAELLARVRARMR*GRHDFVRTVLGIIP
Trigger: GGGAATGATCCCCAGAACAGTCCTTACAAAGTCGTGCCTTCCCCAGCGCATCCTAGCCCGTACTCTAGCCAAGAGCTCAGCGTGGCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp AGAGGGAAATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTaGGACTCTCATCCCAGAGAGATGAGAGATGGCAGTGCCCACTTG +
Preference number: 1 (lower is better)
Translates to: RGKLIAHCCPCSCWA*DSHPREMRDGSAHL
Trigger: CAAGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp TGCTGGGACATAGGACTCACAGATAGAGATAGGCTGGCTGGCCATTaGGCCCTAGGAATCCACCTGTCTCTGCCTCTCCAGTGCCAGGAT +
Preference number: 1 (lower is better)
Translates to: CWDIGLTDRDRLAGH*ALGIHLSLPLQCQD
Trigger: ATCCTGGCACTGGAGAGGCAGAGACAGGTGGATTCCTAGGGCTCAATGGCCAGCCAGCCTATCTCTATCTGTGAGTCCTATGTCCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp GGAAAGGTCCCTCTGCTTCATAGAGGGAAATTGATAGCCCACTGCTaGCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGAGAGATG +
Preference number: 1 (lower is better)
Translates to: GKVPLLHRGKLIAHC*PCSCWAWDSHPREM
Trigger: CATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAGCAGAGGGACCTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp CTAGGAAAGGTCCCTCTGCTTCATAGAGGGAAATTGATAGCCCACTaGTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGAGAG +
Preference number: 1 (lower is better)
Translates to: LGKVPLLHRGKLIAH*CPCSCWAWDSHPRE
Trigger: CTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAGCAGAGGGACCTTTCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATaGTACCTGCACAGGGCTAAGGTTTTCCTCTTCTCCAGTCTCCCA +
Preference number: 1 (lower is better)
Translates to: RSSKAAGTASPPHNK*YLHRAKVFLFSSLP
Trigger: TGGGAGACTGGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp CTTCATAGAGGGAAATTGATAGCCCACTGCTGCCCATGTTCCTGCTaGGCCTGGGACTCTCATCCCAGAGAGATGAGAGATGGCAGTGCC +
Preference number: 1 (lower is better)
Translates to: LHRGKLIAHCCPCSC*AWDSHPREMRDGSA
Trigger: GGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp ATGCCTCTCCATCCCAGGACAAAGAATGGATGCTGTGTTGAGAGCTaGTTTCCAGGGCCTGCAGTTATGGGAGGAGGAGGCAGGCACAAG +
Preference number: 1 (lower is better)
Translates to: MPLHPRTKNGCCVES*FPGPAVMGGGGRHK
Trigger: CTTGTGCCTGCCTCCTCCTCCCATAACTGCAGGCCCTGGAAACCAGCTCTCAACACAGCATCCATTCTTTGTCCTGGGATGGAGAGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp TTCTCAGATGCCTCTCCATCCCAGGACAAAGAATGGATGCTGTGTTaGGAGCTGGTTTCCAGGGCCTGCAGTTATGGGAGGAGGAGGCAG +
Preference number: 1 (lower is better)
Translates to: FSDASPSQDKEWMLC*ELVSRACSYGRRRQ
Trigger: CTGCCTCCTCCTCCCATAACTGCAGGCCCTGGAAACCAGCTCTCAACACAGCATCCATTCTTTGTCCTGGGATGGAGAGGCATCTGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 90 bp GATGCATACTTACTGTGTCACACCAGGAGGTTGAGGTGTTACCCCTaGCTGTCACAGCCTCATCTTGGACACAGATGTCTGGGGGTGACC +
Preference number: 1 (lower is better)
Translates to: DAYLLCHTRRLRCYP*LSQPHLGHRCLGVT
Trigger: GGTCACCCCCAGACATCTGTGTCCAAGATGAGGCTGTGACAGGCAGGGGTAACACCTCAACCTCCTGGTGTGACACAGTAAGTATGCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp TTGACTAGGAGTTCCACCACTTTGTGTCACCTTTGTAGACCAGGCTaGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGTGCT +
Preference number: 1 (lower is better)
Translates to: LTRSSTTLCHLCRPG*PRTQKSACLCLPSA
Trigger: AGCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR GCA 90 bp GAGAATGATCACATGGCTGAGCCCCTAGCACCCTTGTATGTGAGATaGTGGGAGCAGAAGAGGGAGGGTTTAATCAGCTCCAAGGAAGCA +
Preference number: 1 (lower is better)
Translates to: ENDHMAEPLAPLYVR*WEQKREGLISSKEA
Trigger: TGCTTCCTTGGAGCTGATTAAACCCTCCCTCTTCTGCTCCCAGCATCTCACATACAAGGGTGCTAGGGGCTCAGCCATGTGATCATTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 90 bp TCCTACCCAAACAGCCACCAAACGAGGAACCAAATACTCAAATGCTaGAGACTCCTGGACATCTCATTCACACCACCACCCCACCCAGAC +
Preference number: 1 (lower is better)
Translates to: SYPNSHQTRNQILKC*RLLDISFTPPPHPD
Trigger: GTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTTTGGTGGCTGTTTGGGTAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp AGGATTACAAATGTGTATCTCCATGCCCAGCTTTCTGTGTCCAGCTaGGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACCCGAGAA +
Preference number: 1 (lower is better)
Translates to: RITNVYLHAQLSVSS*AFSCIAVCLYHTRE
Trigger: TTCTCGGGTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACAGAAAGCTGGGCATGGAGATACACATTTGTAATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 90 bp TGTGGCAGAATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTTaGGAGAAGGTGTCTAAGCCAGCCACTCTCAGGCAGTGTTGGACC +
Preference number: 1 (lower is better)
Translates to: CGRIEISYLLRKGYC*EKVSKPATLRQCWT
Trigger: GGTCCAACACTGCCTGAGAGTGGCTGGCTTAGACACCTTCTCCCAACAGTACCCTTTACGTAGGAGGTAGGATATTTCTATTCTGCCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp AATAGCAGTCAGATGGACCCAGTGGAGAGTGTCAAGGCTGGAAATTaGCTAGGAGTTCCACCACTTTGTGTCACCTTTGTAGACCAGGCT +
Preference number: 1 (lower is better)
Translates to: NSSQMDPVESVKAGN*LGVPPLCVTFVDQA
Trigger: AGCCTGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTGACACTCTCCACTGGGTCCATCTGACTGCTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR TCA 90 bp GATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTaGCTCCGCTCAATTGCTTCAAATCTTTGTAGACCAGGCTGGCCT +
Preference number: 1 (lower is better)
Translates to: DLVHSCLSVPWASEF*LRSIASNLCRPGWP
Trigger: AGGCCAGCCTGGTCTACAAAGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR GCA 90 bp GCCATGAGAAATGGCTGTTCAGTACTGAAAAGAGCCCTACATAGATaGATACTTACTGTGTCACACCAGGAGGTTGAGGTGTTACCCCTG +
Preference number: 1 (lower is better)
Translates to: AMRNGCSVLKRALHR*ILTVSHQEVEVLPL
Trigger: CAGGGGTAACACCTCAACCTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGAACAGCCATTTCTCATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp GATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTaGCTCCGCTCAATTGCTTCAAATCCTGGAATAGCAGTCAGATGG +
Preference number: 1 (lower is better)
Translates to: DLVHSCLSVPWASEF*LRSIASNPGIAVRW
Trigger: CCATCTGACTGCTATTCCAGGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR GCA 90 bp AGTCAAGTCGAAGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTaGCTTGGGCTTCTGAATTTTGACTCCGCTCAATTGCTTCAAATC +
Preference number: 1 (lower is better)
Translates to: SQVEGGSILFIAASL*LGLLNFDSAQLLQI
Trigger: GATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCTTCGACTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 90 bp GGTGTTTTTCTCTTTGGTCTCTTAGCAAGTCCTTCATGTTTCTCATaGTATCGATGCACTGGAGAATCAGGCTTGTCCATTGTCTCAGAT +
Preference number: 1 (lower is better)
Translates to: GVFLFGLLASPSCFS*YRCTGESGLSIVSD
Trigger: ATCTGAGACAATGGACAAGCCTGATTCTCCAGTGCATCGATATCATGAGAAACATGAAGGACTTGCTAAGAGACCAAAGAGAAAAACACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGGATGGCAGTGCTGGCTaGGAGGGCAGTGCCACCGGG +
Preference number: 2 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGDGSAG*EGSATG
Trigger: CCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATC...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATGGCAGTGCCCACTTGTaGCCCCAGAGGGCCATCCAC +
Preference number: 2 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDGSAHL*PQRAIH
Trigger: GTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCC...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATTGGCAGGGATGGCAGTaGTGGCTGAGAGGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDWQGWQ*WLRGQC
Trigger: GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCA...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGTGTTCCTGCTGGGCCTaGGACTCTCATCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGCSCWA*DSHPRE
Trigger: CTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACA...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGCTCATCCCAGAGAGATaGGAGATGGCAGTGCCCACT +
Preference number: 2 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMLIPER*EMAVPT
Trigger: AGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAG...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCTGCCCATGTTCCTGCTaGGCCTGGGACTCTCATCCC +
Preference number: 2 (lower is better)
Translates to: HSDGRRLPLPWRVHEGSICPCSC*AWDSHP
Trigger: GGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCA...GATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACAGGGCCTGCAGTTATaGGAGGAGGAGGCAGGCACA +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRQGLQL*EEEAGT
Trigger: TGTGCCTGCCTCCTCCTCCCATAACTGCAGGCCCTG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACTGGTTTCCAGGGCCTaGAGTTATGGGAGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRLVSRA*SYGRRR
Trigger: CCTCCTCCTCCCATAACTGCAGGCCCTGGAAACCAG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACTGTGTCTGTTAGGGTaGGTGTCCAGCTTGGGCGTG +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRLCLLG*VSSLGV
Trigger: CACGCCCAAGCTGGACACCCACCCTAACAGACACAG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCTGCCCATGTTCCTGCTaGGCCTGGGACTCTCATCCC +
Preference number: 2 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCCPCSC*AWDSHP
Trigger: GGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCA...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGCCCCTTTCCATCAGGTaGTGTAGCCTCTCAACCCTT +
Preference number: 2 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMPLSIR*CSLSTL
Trigger: AAGGGTTGAGAGGCTACACCACCTGATGGAAAGGGG...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTGACCAAGCCTGATGAGAGATGGCAGTaGCCACTTGTGGCCCCAGAG +
Preference number: 2 (lower is better)
Translates to: PPQSLPQVGRRLWFLTKPDERWQ*PLVAPE
Trigger: CTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATC...AGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR GCA 90 bp CTGGGAGGACTCAGCACCTCCTACTCCTCAAGTCAGGACTTCACCCAACCAGGAGAGCTCAAGGCAGGCTaGCTCCACCTCCACCACCTC +
Preference number: 2 (lower is better)
Translates to: LGGLSTSYSSSQDFTQPGELKAG*LHLHHL
Trigger: GAGGTGGTGGAGGTGGAGGCAGCCTGCCTTGAGCTC...TCCTGGTTGGGTGAAGTCCTGACTTGAGGAGTAGGAGGTGCTGAGTCCTCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR TCA 90 bp CTGGGAGGACTCAGCACCTCCTACTCCTCAAGTCAGGACTTCACCCAACCAGGAAGCCTCCCACCTCCCTaGCCAGGTTCACTTACCCTG +
Preference number: 2 (lower is better)
Translates to: LGGLSTSYSSSQDFTQPGSLPPP*PGSLTL
Trigger: CAGGGTAAGTGAACCTGGTCAGGGAGGTGGGAGGCT...TCCTGGTTGGGTGAAGTCCTGACTTGAGGAGTAGGAGGTGCTGAGTCCTCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGGGTCTAGTATTATCATaGAAGTCACTGCCCAGTGCC +
Preference number: 2 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMGLVLS*KSLPSA
Trigger: GGCACTGGGCAGTGACTTCCATGATAATACTAGACC...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTGGCAGTGCCCACTTGTaGCCCCAGAGGGCCATCCAC +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSGSAHL*PQRAIH
Trigger: GTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCC...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTGACCAAGCCTCAGAGAGATGAGAGATaGCAGTGCCCACTTGTGGCC +
Preference number: 2 (lower is better)
Translates to: PPQSLPQVGRRLWFLTKPQRDER*QCPLVA
Trigger: GGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTG...AGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCCACGTGGGGACTAACTaGTGCTTCTCCAGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCHVGTN*CFSSKD
Trigger: GTCCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTG...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTGACCAAGCCTTTTGGGGAGCAGGTGTaGCCAGGTGATGGAGGGTAT +
Preference number: 2 (lower is better)
Translates to: PPQSLPQVGRRLWFLTKPFGEQV*PGDGGY
Trigger: ATACCCTCCATCACCTGGCCACACCTGCTCCCCAAA...AGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp CTGGGAGGACTCAGCACCTCCTACTCCTCAAGTCAGGACTTCACCCAACCAGGAGACTTCCCCACTGTCTaGGTCACCTGCTGCCCTGGA +
Preference number: 2 (lower is better)
Translates to: LGGLSTSYSSSQDFTQPGDFPTV*VTCCPG
Trigger: TCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTC...TCCTGGTTGGGTGAAGTCCTGACTTGAGGAGTAGGAGGTGCTGAGTCCTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp TGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTaGAAGCAGAGGGCTCATCCTAGAGACCGGGCGGCGACTGCCCAG +
Preference number: 2 (lower is better)
Translates to: WTESIHVDLLSTLNL*KQRAHPRDRAATAQ
Trigger: CTGGGCAGTCGCCGCCCGGTCTCTAGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR TCA 90 bp CCTTTCTGGACCTCCATTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCGATGGCAGTGCTGGCTaGGAGGGCAGTGCCACCGGG +
Preference number: 2 (lower is better)
Translates to: PFWTSIFKTGFLCIALAVDGSAG*EGSATG
Trigger: CCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATC...GACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATGGAGGTCCAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp TGTAAACTACAGAAATGGCCCAAGGAACAGCAGGGCAAGCGCCTCTaGAAACGCCTGCTCTGCTGCTCTCACGGGCTCAGGGCATGGACA +
Preference number: 2 (lower is better)
Translates to: CKLQKWPKEQQGKRL*KRLLCCSHGLRAWT
Trigger: TGTCCATGCCCTGAGCCCGTGAGAGCAGCAGAGCAGGCGTTTCAAGAGGCGCTTGCCCTGCTGTTCCTTGGGCCATTTCTGTAGTTTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR TCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTACCCTGGAGGGTCCATaGAGGGAGCATCCCGATGAG +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSTLEGP*REHPDE
Trigger: CTCATCGGGATGCTCCCTTCATGGACCCTCCAGGGT...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACCTCAACCTGGACTTTaGCATGAGAAATGGCTGTTC +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRPQPGL*HEKWLF
Trigger: GAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTTGCCCATGTTCCTGCTaGGCCTGGGACTCTCATCCC +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSCPCSC*AWDSHP
Trigger: GGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCA...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTCACGTGGGGACTAACTaGTGCTTCTCCAGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: EGCWTISGVHGRENDHMAHVGTN*CFSSKD
Trigger: GTCCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTG...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp CTCCAGCAAGGACTAGGAAAGGTCCCTCTGCTTCATAGAGGGAAATaGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCT +
Preference number: 2 (lower is better)
Translates to: LQQGLGKVPLLHRGK*IAHCCPCSCWAWDS
Trigger: AGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAGCAGAGGGACCTTTCCTAGTCCTTGCTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CAA 90 bp CTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTTaGGGGAGCAGGTGTGGCCAGGTGATGGAGGGTATTCCTGGAAGC +
Preference number: 2 (lower is better)
Translates to: LINSLLPGTQESPGS*GSRCGQVMEGIPGS
Trigger: GCTTCCAGGAATACCCTCCATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CAA 90 bp CCACTGTCTGGGTCACCTGCTGCCCTGGATGGCAGAGCCACTCATTaGTACCATCAGATGGCAATGAGCAGTGTGGTGGATGGAACAGAG +
Preference number: 2 (lower is better)
Translates to: PLSGSPAALDGRATH*YHQMAMSSVVDGTE
Trigger: CTCTGTTCCATCCACCACACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp AGCCCTGAGCTCAGAGCTATGTGGGCTCTGAAACCGGGGGCTAAGTaGGAGGTATCTGGTGCCAAGGCAGGTTGCGTTCCCTCTAAAGAA +
Preference number: 2 (lower is better)
Translates to: SPELRAMWALKPGAK*EVSGAKAGCVPSKE
Trigger: TTCTTTAGAGGGAACGCAACCTGCCTTGGCACCAGATACCTCCAACTTAGCCCCCGGTTTCAGAGCCCACATAGCTCTGAGCTCAGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR TCA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATAGAGGGCCATCCACTTaGTCTGAAGATGTATGTCAA +
Preference number: 2 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDRGPST*SEDVCQ
Trigger: TTGACATACATCTTCAGATCAAGTGGATGGCCCTCT...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGAGTCTGCAGCAGAGCTaGAGGGAAGAGCACGGCATT +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLSLQQS*REEHGI
Trigger: AATGCCGTGCTCTTCCCTTCAGCTCTGCTGCAGACT...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTGCAGGTGTGGCCAGGTaGTGGAGGGTATTCCTGGAA +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSAGVAR*WRVFLE
Trigger: TTCCAGGAATACCCTCCATCACCTGGCCACACCTGC...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTTGCTGCCCATGTTCCTaGTGGGCCTGGGACTCTCAT +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSCCPCS*WAWDSH
Trigger: ATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCA...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTTGCTGCCCATGTTCCTaGTGGGCCTGGGACTCTCAT +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFCCPCS*WAWDSH
Trigger: ATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCA...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTCCCTTGTATGTGAGATaGTGGGAGCAGAAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: EGCWTISGVHGRENDHMAPLYVR*WEQKRE
Trigger: CTCCCTCTTCTGCTCCCAGCATCTCACATACAAGGG...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGCAGAGAGATGAGAGATaGCAGTGCCCACTTGTGGCC +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLQRDER*QCPLVA
Trigger: GGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTG...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGATTCCATCTGGAGGATaGCAGGGATGGCAGTGCTGG +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLIPSGG*QGWQCW
Trigger: CCAGCACTGCCATCCCTGCCATCCTCCAGATGGAAT...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGTTTGGGGAGCAGGTGTaGCCAGGTGATGGAGGGTAT +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLFGEQV*PGDGGY
Trigger: ATACCCTCCATCACCTGGCCACACCTGCTCCCCAAA...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp TGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGAGCCCTTGTATGTGAGATGCTaGGAGCAGAAGAGGGAGGGT +
Preference number: 2 (lower is better)
Translates to: CWTISGVHGRENDHMAEPLYVRC*EQKREG
Trigger: ACCCTCCCTCTTCTGCTCCCAGCATCTCACATACAA...GGGCTCAGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp CTTCTCAGATGCCTCTCCATCCCAGGACAAAGAATGGATGCTGTGTaGAGAGCTGGTTTCCAGGGCCTGCAGTTATGGGAGGAGGAGGCA +
Preference number: 2 (lower is better)
Translates to: LLRCLSIPGQRMDAV*RAGFQGLQLWEEEA
Trigger: TGCCTCCTCCTCCCATAACTGCAGGCCCTGGAAACCAGCTCTCAACACAGCATCCATTCTTTGTCCTGGGATGGAGAGGCATCTGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp ATACTGTCCCTCAACCTGGACTTTGCCATGAGAAATGGCTGTTCAGTACTGAAAGATGGCAGTGCTGGCTaGGAGGGCAGTGCCACCGGG +
Preference number: 2 (lower is better)
Translates to: ILSLNLDFAMRNGCSVLKDGSAG*EGSATG
Trigger: CCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATC...TTTCAGTACTGAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGGGACAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTAGTCTGCAGCAGAGCTaGAGGGAAGAGCACGGCATT +
Preference number: 2 (lower is better)
Translates to: LHHLINSLLPGTQESPGSSLQQS*REEHGI
Trigger: AATGCCGTGCTCTTCCCTTCAGCTCTGCTGCAGACT...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTAGGCAGGCACAAGTCTaGAGCAGAGCTGAAGGGAAG +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFRQAQV*SRAEGK
Trigger: CTTCCCTTCAGCTCTGCTGCAGACTTGTGCCTGCCT...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGAAGAGCCCTACATAGATaGATACTTACTGTGTCACAC +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRRALHR*ILTVSH
Trigger: GTGTGACACAGTAAGTATGCATCTATGTAGGGCTCT...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTCACGTGGGGACTAACTaGTGCTTCTCCAGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFHVGTN*CFSSKD
Trigger: GTCCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTG...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACAAATACTCAAATGCTaGAGACTCCTGGACATCTCA +
Preference number: 2 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRQILKC*RLLDIS
Trigger: TGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGCTGGGATTAAAGGCGTaGGCCAGCACTGCCCGGCAT +
Preference number: 2 (lower is better)
Translates to: NPPVSASPVPGLQMCISMLGLKA*ASTARH
Trigger: ATGCCGGGCAGTGCTGGCGCACGCCTTTAATCCCAG...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTACTCAGAAATCCGCCTaGCTCTGTCTCCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFTQKSA*LCLPSA
Trigger: AGCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGT...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTTTCTGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACGAATGGGCTTCAGTCTaGTGCCCCTTTCCATCAGGT +
Preference number: 2 (lower is better)
Translates to: AFCVQLSFLLHSRVPVSHEWASV*CPFPSG
Trigger: ACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTC...GTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACAGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp AGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTGCTGCCCATGTTCCTaGTGGGCCTGGGACTCTCAT +
Preference number: 2 (lower is better)
Translates to: RWIDLVHSCLSVPWASEFCCPCS*WAWDSH
Trigger: ATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCA...AAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp CAAGGCTGGAAATTGACTAGGAGTTCCACCACTTTGTGTCACCTTTGTAGACCACTGGGATTAAAGGCGTaGGCCAGCACTGCCCGGCAT +
Preference number: 2 (lower is better)
Translates to: QGWKLTRSSTTLCHLCRPLGLKA*ASTARH
Trigger: ATGCCGGGCAGTGCTGGCGCACGCCTTTAATCCCAG...TGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTGACTTCTGGTCGGGCTaGACAGAGTCCTGGTCTAGG +
Preference number: 2 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPDFWSG*TESWSR
Trigger: CCTAGACCAGGACTCTGTGCAGCCCGACCAGAAGTC...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR GCA 90 bp TGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACCCGAGACCTCAACCTGGACTTTaGCATGAGAAATGGCTGTTC +
Preference number: 2 (lower is better)
Translates to: CVQLSFLLHSRVPVSHPRPQPGL*HEKWLF
Trigger: GAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGG...TCTCGGGTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp TTTTCCTCTTCTCCAGTCTCCCAGCAGCTTGCCTGCTTTTCATGGACCTTGTTACTGTGTCTGTTAGGGTaGGTGTCCAGCTTGGGCGTG +
Preference number: 2 (lower is better)
Translates to: FSSSPVSQQLACFSWTLLLCLLG*VSSLGV
Trigger: CACGCCCAAGCTGGACACCCACCCTAACAGACACAG...TAACAAGGTCCATGAAAAGCAGGCAAGCTGCTGGGAGACTGGAGAAGAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp GACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACAACTGTGTCTGTTAGGGTaGGTGTCCAGCTTGGGCGTG +
Preference number: 2 (lower is better)
Translates to: DISFTPPPHPDSTSRSLQLCLLG*VSSLGV
Trigger: CACGCCCAAGCTGGACACCCACCCTAACAGACACAG...TTGTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGGGTCTAGTATTATCATaGAAGTCACTGCCCAGTGCC +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLGLVLS*KSLPSA
Trigger: GGCACTGGGCAGTGACTTCCATGATAATACTAGACC...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTGGAATAGCAGTCAGATaGACCCAGTGGAGAGTGTCA +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFGIAVR*TQWRVS
Trigger: TGACACTCTCCACTGGGTCCATCTGACTGCTATTCC...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp AACGAGGAACCAAATACTCAAATGCTGGAGACTCCTGGACATCTCATTCACACCGCAGGTGTGGCCAGGTaGTGGAGGGTATTCCTGGAA +
Preference number: 2 (lower is better)
Translates to: NEEPNTQMLETPGHLIHTAGVAR*WRVFLE
Trigger: TTCCAGGAATACCCTCCATCACCTGGCCACACCTGC...GGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTGGAAAAATTCCTTGCCTaGTTCTATCCTGTGGCAGAA +
Preference number: 2 (lower is better)
Translates to: RSSKAAGTASPPHNKCYLEKFLA*FYPVAE
Trigger: TTCTGCCACAGGATAGAACCAGGCAAGGAATTTTTC...CAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp TTTTCCTCTTCTCCAGTCTCCCAGCAGCTTGCCTGCTTTTCATGGACCTTGTTAGATGGAGGGTATTCCTaGAAGCAGGCAGGGCCACAT +
Preference number: 2 (lower is better)
Translates to: FSSSPVSQQLACFSWTLLDGGYS*KQAGPH
Trigger: ATGTGGCCCTGCCTGCTTCCAGGAATACCCTCCATC...TAACAAGGTCCATGAAAAGCAGGCAAGCTGCTGGGAGACTGGAGAAGAGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp TGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACCCGAGATCAGCTTCTGTAGTCTaGGCTGTCACTGGTAATGTA +
Preference number: 2 (lower is better)
Translates to: CVQLSFLLHSRVPVSHPRSASVV*AVTGNV
Trigger: TACATTACCAGTGACAGCCCAGACTACAGAAGCTGA...TCTCGGGTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTAGTCAAGAGGACCCTTaGCAGGAGAGGGACTCTGAG +
Preference number: 2 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPSQEDP*QERDSE
Trigger: CTCAGAGTCCCTCTCCTGCCAAGGGTCCTCTTGACT...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CCA 90 bp GCATCCACTGGGGAAGGGGGCAGCGTAGTTTGTGTGTTTGAGACAGGGTCTTTTCTCACATTCTGTAGATaGAAACCACCCAGGACAACC +
Preference number: 2 (lower is better)
Translates to: ASTGEGGSVVCVFETGSFLTFCR*KPPRTT
Trigger: GGTTGTCCTGGGTGGTTTCCATCTACAGAATGTGAG...AAAAGACCCTGTCTCAAACACACAAACTACGCTGCCCCCTTCCCCAGTGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CAA 90 bp GGTCGGGCTGCACAGAGTCCTGGTCTAGGGAACTCTGTCCTCACTTaGACTTCTTTTCTTGAAATGAAAAGAGAGAGCCTGAGAGGCTTC +
Preference number: 2 (lower is better)
Translates to: GRAAQSPGLGNSVLT*TSFLEMKRESLRGF
Trigger: GAAGCCTCTCAGGCTCTCTCTTTTCATTTCAAGAAAAGAAGTCAAAGTGAGGACAGAGTTCCCTAGACCAGGACTCTGTGCAGCCCGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp TTACCCAAAGGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTaGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGC +
Preference number: 2 (lower is better)
Translates to: LPKGRLSLFPKTSLT*ASFSPVHGQASHPC
Trigger: GCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCCTTTGGGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp AGTGGAGAGTGTCAAGGCTGGAAATTGACTAGGAGTTCCACCACTTaGTGTCACCTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC +
Preference number: 2 (lower is better)
Translates to: SGECQGWKLTRSSTT*CHLCRPGWPRTQKS
Trigger: GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTGACACTCTCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTAGAGGGCCATCCACTTaGTCTGAAGATGTATGTCAA +
Preference number: 2 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTRGPST*SEDVCQ
Trigger: TTGACATACATCTTCAGATCAAGTGGATGGCCCTCT...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGGATGAGAGATGGCAGTaGCCACTTGTGGCCCCAGAG +
Preference number: 2 (lower is better)
Translates to: SVLKRALHRCILTVSHQEDERWQ*PLVAPE
Trigger: CTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATC...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGAGGACAAAGAATGGATaGTGTGTTGAGAGCTGGTTT +
Preference number: 2 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLRTKNG*CVESWF
Trigger: AAACCAGCTCTCAACACAGCATCCATTCTTTGTCCT...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp GCTTTCTGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACTTGCCAGCATTCTCTTaGAGACCAATAGTCAAGTCG +
Preference number: 2 (lower is better)
Translates to: AFCVQLSFLLHSRVPVSHLPAFS*RPIVKS
Trigger: CGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAA...GTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACAGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGTGTTCCTGCTGGGCCTaGGACTCTCATCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: SVLKRALHRCILTVSHQECSCWA*DSHPRE
Trigger: CTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACA...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACAACCCCTTTCCATCAGGTaGTGTAGCCTCTCAACCCTT +
Preference number: 2 (lower is better)
Translates to: DISFTPPPHPDSTSRSLQPLSIR*CSLSTL
Trigger: AAGGGTTGAGAGGCTACACCACCTGATGGAAAGGGG...TTGTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGCAGGGCCTGCAGTTATaGGAGGAGGAGGCAGGCACA +
Preference number: 2 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKQGLQL*EEEAGT
Trigger: TGTGCCTGCCTCCTCCTCCCATAACTGCAGGCCCTG...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTGCCCTGGATGGCAGAGCCACTCATTTGTACCATCAGATGGCAATGAGCAGTTCAGCTTCTGTAGTCTaGGCTGTCACTGGTAATGTA +
Preference number: 2 (lower is better)
Translates to: AALDGRATHLYHQMAMSSSASVV*AVTGNV
Trigger: TACATTACCAGTGACAGCCCAGACTACAGAAGCTGA...ACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 90 bp GCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTGACTCCGCTCAATaGCTTCAAATCTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT +
Preference number: 2 (lower is better)
Translates to: AASLCLGLLNFDSAQ*LQIFVDQAGLELRN
Trigger: ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR-3UTR GCA 90 bp AACGAGGAACCAAATACTCAAATGCTGGAGACTCCTGGACATCTCATTCACACCACTCAGAAATCCGCCTaGCTCTGTCTCCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: NEEPNTQMLETPGHLIHTTQKSA*LCLPSA
Trigger: AGCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGT...GGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp AACGAGGAACCAAATACTCAAATGCTGGAGACTCCTGGACATCTCATTCACACCGAATCCACCTGTCTCTaGCTCTCCAGTGCCAGGATT +
Preference number: 2 (lower is better)
Translates to: NEEPNTQMLETPGHLIHTESTCL*LSSARI
Trigger: AATCCTGGCACTGGAGAGGCAGAGACAGGTGGATTC...GGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGTGTTCCTGCTGGGCCTaGGACTCTCATCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKCSCWA*DSHPRE
Trigger: CTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACA...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CAAGGCTGGAAATTGACTAGGAGTTCCACCACTTTGTGTCACCTTTGTAGACCAGAATGGGCTTCAGTCTaGTGCCCCTTTCCATCAGGT +
Preference number: 2 (lower is better)
Translates to: QGWKLTRSSTTLCHLCRPEWASV*CPFPSG
Trigger: ACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTC...TGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR CAA 90 bp CCACTTGATCTGAAGATGTATGTCAAATACCTTCTATCCAAAGGCTaGTTCCTTCTGTCCAGGACCCCAGAGGGTCCAGGCATTAGGTCT +
Preference number: 2 (lower is better)
Translates to: PLDLKMYVKYLLSKG*FLLSRTPEGPGIRS
Trigger: AGACCTAATGCCTGGACCCTCTGGGGTCCTGGACAGAAGGAACAAGCCTTTGGATAGAAGGTATTTGACATACATCTTCAGATCAAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGCTCATCCCAGAGAGATaGGAGATGGCAGTGCCCACT +
Preference number: 2 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLLIPER*EMAVPT
Trigger: AGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAG...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp GACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACAATGTGCCTTGGGCTTCTaGATTTTGACTCCGCTCAAT +
Preference number: 2 (lower is better)
Translates to: DISFTPPPHPDSTSRSLQCALGF*ILTPLN
Trigger: ATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACA...TTGTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp GCTTTCTGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACAATTGCTTCAAATCCTaGAATAGCAGTCAGATGGAC +
Preference number: 2 (lower is better)
Translates to: AFCVQLSFLLHSRVPVSHNCFKS*NSSQMD
Trigger: GTCCATCTGACTGCTATTCCAGGATTTGAAGCAATT...GTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACAGAAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR CAA 90 bp AGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGGTGGATCGATCTaGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTGAC +
Preference number: 2 (lower is better)
Translates to: SILLQTNSQVEGGSI*FIAASLCLGLLNFD
Trigger: GTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCTTCGACTTGACTATTGGTCTGCAAGAGAATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp CAAGGCTGGAAATTGACTAGGAGTTCCACCACTTTGTGTCACCTTTGTAGACCAGGTCTAGTATTATCATaGAAGTCACTGCCCAGTGCC +
Preference number: 2 (lower is better)
Translates to: QGWKLTRSSTTLCHLCRPGLVLS*KSLPSA
Trigger: GGCACTGGGCAGTGACTTCCATGATAATACTAGACC...TGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGTGTGCCTTGGGCTTCTaGATTTTGACTCCGCTCAAT +
Preference number: 2 (lower is better)
Translates to: SVLKRALHRCILTVSHQECALGF*ILTPLN
Trigger: ATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACA...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGGAAAAATTCCTTGCCTaGTTCTATCCTGTGGCAGAA +
Preference number: 2 (lower is better)
Translates to: NPPVSASPVPGLQMCISMEKFLA*FYPVAE
Trigger: TTCTGCCACAGGATAGAACCAGGCAAGGAATTTTTC...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp ATACTGTCCCTCAACCTGGACTTTGCCATGAGAAATGGCTGTTCAGTACTGAAATGTAAACCGAAGTGCTaGGGTTTGGGGCCTATTATG +
Preference number: 2 (lower is better)
Translates to: ILSLNLDFAMRNGCSVLKCKPKC*GLGPIM
Trigger: CATAATAGGCCCCAAACCCCAGCACTTCGGTTTACA...TTTCAGTACTGAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGGGACAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGTGGTGTTTTTCTCTTTaGTCTCTTAGCAAGTCCTTC +
Preference number: 2 (lower is better)
Translates to: NPPVSASPVPGLQMCISMWCFSL*SLSKSF
Trigger: GAAGGACTTGCTAAGAGACCAAAGAGAAAAACACCA...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR TCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGAGAGGGCCATCCACTTaGTCTGAAGATGTATGTCAA +
Preference number: 2 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLRGPST*SEDVCQ
Trigger: TTGACATACATCTTCAGATCAAGTGGATGGCCCTCT...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp ATACTGTCCCTCAACCTGGACTTTGCCATGAGAAATGGCTGTTCAGTACTGAAAAGAGCCCTACATAGATaGATACTTACTGTGTCACAC +
Preference number: 2 (lower is better)
Translates to: ILSLNLDFAMRNGCSVLKRALHR*ILTVSH
Trigger: GTGTGACACAGTAAGTATGCATCTATGTAGGGCTCT...TTTCAGTACTGAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGGGACAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGAACCATTTAACACTTTaGCAGCATTCTCTTGCAGAC +
Preference number: 2 (lower is better)
Translates to: SVLKRALHRCILTVSHQENHLTL*QHSLAD
Trigger: GTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTT...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR GCA 90 bp AACGAGGAACCAAATACTCAAATGCTGGAGACTCCTGGACATCTCATTCACACCTATCACAGATCTATGTaGTCCATTTGGTGTTTTTCT +
Preference number: 2 (lower is better)
Translates to: NEEPNTQMLETPGHLIHTYHRSM*SIWCFS
Trigger: AGAAAAACACCAAATGGAGCACATAGATCTGTGATA...GGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp GGCAGTGCCACCGGGGTGGTGAATGGGCTTCAGTCTGGTGCCCCTTTCCATCAGGGGTGGGTGTCCAGCTaGGGCGTGGCGGGCAGCGTT +
Preference number: 3 (lower is better)
Translates to: GSATGVVNGLQSGAPFHQGWVSS*GVAGSV
Trigger: AACGCTGCCCGCCACGCCCAAGCTGGACACCCACCC...CTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATGGGTGGGTGTCCAGCTaGGGCGTGGCGGGCAGCGTT +
Preference number: 3 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDGWVSS*GVAGSV
Trigger: AACGCTGCCCGCCACGCCCAAGCTGGACACCCACCC...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp ATAGGATGGGGAGGGAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAGGGTGGGTGTCCAGCTaGGGCGTGGCGGGCAGCGTT +
Preference number: 3 (lower is better)
Translates to: IGWGGRDAGPSLGFTGGRGWVSS*GVAGSV
Trigger: AACGCTGCCCGCCACGCCCAAGCTGGACACCCACCC...TCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTCCCTCCCCATCCTAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp ATCCCTGCCCCATCGCCTCCCGACTTCCCCACTGTCTaGGTCACCTGCTGCCCTGGATGGCAGAGCCACTCA +
Preference number: 3 (lower is better)
Translates to: IPAPSPPDFPTV*VTCCPGWQSHS
Trigger: TGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGATGGGGCAGGGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp GCAGTGCTGGCTGAGAGGGCAGTGCCACCGGGGTGGTaGATGGGCTTCAGTCTGGTGCCCCTTTCCATCAGG +
Preference number: 3 (lower is better)
Translates to: AVLAERAVPPGW*MGFSLVPLSIR
Trigger: CCTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp AGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATaGAGGGAGCATCCCGATGAGGCAAGGCAACTCGAG +
Preference number: 3 (lower is better)
Translates to: RWASPAPTLEGP*REHPDEARQLE
Trigger: CTCGAGTTGCCTTGCCTCATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTaGAGGGTCCATGAAGGGAGCATCCCGATGAGGCAA +
Preference number: 3 (lower is better)
Translates to: ARHSDGRRLPLP*RVHEGSIPMRQ
Trigger: TTGCCTCATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp TGCTCTGCTGCTCTCACGGGCTCAGGGCATGGACACTaGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTC +
Preference number: 3 (lower is better)
Translates to: CSAALTGSGHGH*RLLVGLHRVLV
Trigger: GACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAGCCCGTGAGAGCAGCAGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGCACTCTCAGGCAGTGTaGGACCACCTTGGCGTTGGA +
Preference number: 3 (lower is better)
Translates to: CRGATKPTWGLTGASPARHSQAV*DHLGVG
Trigger: TCCAACGCCAAGGTGGTCCAACACTGCCTGAGAGTG...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp TCCACCATTCCATCTGGAGGATGGCAGGGATGGCAGTaGTGGCTGAGAGGGCAGTGCCACCGGGGTGGTGAA +
Preference number: 3 (lower is better)
Translates to: STIPSGGWQGWQ*WLRGQCHRGGE
Trigger: TTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CTGGGCCTGGGACTCTCATCCCAGAGAGATGAGAGATaGCAGTGCCCACTTGTGGCCCCAGAGGGCCATCCA +
Preference number: 3 (lower is better)
Translates to: LGLGLSSQRDER*QCPLVAPEGHP
Trigger: TGGATGGCCCTCTGGGGCCACAAGTGGGCACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTaGCTGAGAGGGCAGTGCCACCGGGGTGGTGAATGG +
Preference number: 3 (lower is better)
Translates to: TIPSGGWQGWQC*LRGQCHRGGEW
Trigger: CCATTCACCACCCCGGTGGCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CCAGGGCCTTGTTCTTGGCTACTGAGTAAGCAGGACTaGCGGGGAGCCACGAAGCCCACGTGGGGACTAACT +
Preference number: 3 (lower is better)
Translates to: PGPCSWLLSKQD*RGATKPTWGLT
Trigger: AGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCAGTCCTGCTTACTCAGTAGCCAAGAACAAGGCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CCATCGCCTCCCGACTTCCCCACTGTCTGGGTCACCTaGTGCCCTGGATGGCAGAGCCACTCATTTGTACCA +
Preference number: 3 (lower is better)
Translates to: PSPPDFPTVWVT*CPGWQSHSFVP
Trigger: TGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTCGGGAGGCGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp AGTAAGCAGGACTGCCGGGGAGCCACGAAGCCCACGTaGGGACTAACTGGTGCTTCTCCAGCAAGGACTAGG +
Preference number: 3 (lower is better)
Translates to: SKQDCRGATKPT*GLTGASPARTR
Trigger: CCTAGTCCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCAGTCCTGCTTACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp GGGCAGTGCCACCGGGGTGGTGAATGGGCTTCAGTCTaGTGCCCCTTTCCATCAGGTGGTGTAGCCTCTCAA +
Preference number: 3 (lower is better)
Translates to: GQCHRGGEWASV*CPFPSGGVASQ
Trigger: TTGAGAGGCTACACCACCTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp AAGTGGCCCTGTCACTCCACCATTCCATCTGGAGGATaGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGC +
Preference number: 3 (lower is better)
Translates to: KWPCHSTIPSGG*QGWQCWLRGQC
Trigger: GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACAGGGCCACTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CCACCTCAAGTGGCCCTGTCACTCCACCATTCCATCTaGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGG +
Preference number: 3 (lower is better)
Translates to: PPQVALSLHHSI*RMAGMAVLAER
Trigger: CCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGTGGAGTGACAGGGCCACTTGAGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGCTTCTATCCAAAGGCTaGTTCCTTCTGTCCAGGACC +
Preference number: 3 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGLLSKG*FLLSRT
Trigger: GGTCCTGGACAGAAGGAACAAGCCTTTGGATAGAAG...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTGACCAAGCCTGCAGGCAGGGCCACATaGATGCTGACCCTTCTCAGA +
Preference number: 3 (lower is better)
Translates to: PPQSLPQVGRRLWFLTKPAGRAT*MLTLLR
Trigger: TCTGAGAAGGGTCAGCATCAATGTGGCCCTGCCTGC...AGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp ATGTACGTGGATGCATGGGTGTGGGGGTCAGGGGCCTaGGGTCAACCTGGGTGGTTGTTCCTCAGGTGGCAT +
Preference number: 3 (lower is better)
Translates to: MYVDAWVWGSGA*GQPGWLFLRWH
Trigger: ATGCCACCTGAGGAACAACCACCCAGGTTGACCTCAGGCCCCTGACCCCCACACCCATGCATCCACGTACAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CCAAATCCCAGCCAGCATAGGATGGGGAGGGAGGGATaGTGGACCATCTCTGGGGTTCACGGGAGGGAGAAT +
Preference number: 3 (lower is better)
Translates to: PNPSQHRMGREG*WTISGVHGREN
Trigger: ATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTCCCTCCCCATCCTATGCTGGCTGGGATTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 72 bp TCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTaGCCCATCGCCTCCCGACTTCCCCACTGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: SFSPVHGQASHP*PIASRLPHCLG
Trigger: ACCCAGACAGTGGGGAAGTCGGGAGGCGATGGGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTaGCCAGGTGATGGAGGGTATTCCTGGAAGCAGGCA +
Preference number: 3 (lower is better)
Translates to: DPRESRQFGEQV*PGDGGYSWKQA
Trigger: TGCCTGCTTCCAGGAATACCCTCCATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATCTTCATAGAGGGAAATaGATAGCCCACTGCTGCCCA +
Preference number: 3 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDLHRGK*IAHCCP
Trigger: TGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAG...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp CCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATaGGGCAAGGCAACTCGAGACAAGCCCTTTAGTCAC +
Preference number: 3 (lower is better)
Translates to: PYPGGSMKGASR*GKATRDKPFSH
Trigger: GTGACTAAAGGGCTTGTCTCGAGTTGCCTTGCCTCATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp GCAGAAGCCAGCCTCAGGCCGCTGACTCCTAGCATCTaGCTGTGCCTTGGACTGAGAGCATCCATGTTGATC +
Preference number: 3 (lower is better)
Translates to: AEASLRPLTPSI*LCLGLRASMLI
Trigger: GATCAACATGGATGCTCTCAGTCCAAGGCACAGGCAGATGCTAGGAGTCAGCGGCCTGAGGCTGGCTTCTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GCTGAGCTCTTGGCTAGAGTACGGGCTAGGATGCGCTaGGGAAGGCACGACTTTGTAAGGACTGTTCTGGGG +
Preference number: 3 (lower is better)
Translates to: AELLARVRARMR*GRHDFVRTVLG
Trigger: CCCCAGAACAGTCCTTACAAAGTCGTGCCTTCCCCAGCGCATCCTAGCCCGTACTCTAGCCAAGAGCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp CCTGACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGCCCAGCACCCTGAACCTCTaGAAGCAGAGGGCTCATCCT +
Preference number: 3 (lower is better)
Translates to: PDLGFILSCSRSGFSSLPSTLNL*KQRAHP
Trigger: AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCT...GGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp TCCAGTGAAGCCCTGAGCTCAGAGCTATGTGGGCTCTaGAACCGGGGGCTAAGTTGGAGGTATCTGGTGCCA +
Preference number: 3 (lower is better)
Translates to: SSEALSSELCGL*NRGLSWRYLVP
Trigger: TGGCACCAGATACCTCCAACTTAGCCCCCGGTTTCAGAGCCCACATAGCTCTGAGCTCAGGGCTTCACTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 72 bp CCTCTGCTTCATAGAGGGAAATTGATAGCCCACTGCTaGCCATGTTCCTGCTGGGCCTGGGACTCTCATCCC +
Preference number: 3 (lower is better)
Translates to: PLLHRGKLIAHC*PCSCWAWDSHP
Trigger: GGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAGCAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp GCCAGCCTCAGGCCGCTGACTCCTAGCATCTGCCTGTaGCTTGGACTGAGAGCATCCATGTTGATCTTCTCA +
Preference number: 3 (lower is better)
Translates to: ASLRPLTPSICL*LGLRASMLIFS
Trigger: TGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCACAGGCAGATGCTAGGAGTCAGCGGCCTGAGGCTGGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp TTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTaGGACTCTCATCCCAGAGAGATGAGAGATGGCAGT +
Preference number: 3 (lower is better)
Translates to: LIAHCCPCSCWA*DSHPREMRDGS
Trigger: ACTGCCATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTaGACAGGGCTAAGGTTTTCCTCTTCTCCAGTCTCC +
Preference number: 3 (lower is better)
Translates to: LAQPHLPTTNAT*TGLRFSSSPVS
Trigger: GGAGACTGGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GGGAAATTGATAGCCCACTGCTGCCCATGTTCCTGCTaGGCCTGGGACTCTCATCCCAGAGAGATGAGAGAT +
Preference number: 3 (lower is better)
Translates to: GKLIAHCCPCSC*AWDSHPREMRD
Trigger: ATCTCTCATCTCTCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAATTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CATCCCAGGACAAAGAATGGATGCTGTGTTGAGAGCTaGTTTCCAGGGCCTGCAGTTATGGGAGGAGGAGGC +
Preference number: 3 (lower is better)
Translates to: HPRTKNGCCVES*FPGPAVMGGGG
Trigger: GCCTCCTCCTCCCATAACTGCAGGCCCTGGAAACCAGCTCTCAACACAGCATCCATTCTTTGTCCTGGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTaGTTCTTGACCAAGCCTTGTCACTTACAGATCATG +
Preference number: 3 (lower is better)
Translates to: PPQSLPQVGRRL*FLTKPCHLQIM
Trigger: CATGATCTGTAAGTGACAAGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GACTTCCCCACTGTCTGGGTCACCTGCTGCCCTGGATaGCAGAGCCACTCATTTGTACCATCAGATGGCAAT +
Preference number: 3 (lower is better)
Translates to: DFPTVWVTCCPG*QSHSFVPSDGN
Trigger: ATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCCAGACAGTGGGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp CTGGGAGGACTCAGCACCTCCTACTCCTCAAGTCAGGACTTCACCCAACCAGGACTTCTATCCAAAGGCTaGTTCCTTCTGTCCAGGACC +
Preference number: 3 (lower is better)
Translates to: LGGLSTSYSSSQDFTQPGLLSKG*FLLSRT
Trigger: GGTCCTGGACAGAAGGAACAAGCCTTTGGATAGAAG...TCCTGGTTGGGTGAAGTCCTGACTTGAGGAGTAGGAGGTGCTGAGTCCTCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp AGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTGAGAGTCCAGGCAGTTaGGGGAGCAGGTGTGGCCAG +
Preference number: 3 (lower is better)
Translates to: RWIDLVHSCLSVPWASEFESPGS*GSRCGQ
Trigger: CTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTC...AAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp AGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTaGCCAAGCCTTGTCACTTACAGATCATGTGACCCT +
Preference number: 3 (lower is better)
Translates to: RASHRWGGDSGS*PSLVTYRSCDP
Trigger: AGGGTCACATGATCTGTAAGTGACAAGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp ATAGGACTCACAGATAGAGATAGGCTGGCTGGCCATTaGGCCCTAGGAATCCACCTGTCTCTGCCTCTCCAG +
Preference number: 3 (lower is better)
Translates to: IGLTDRDRLAGH*ALGIHLSLPLQ
Trigger: CTGGAGAGGCAGAGACAGGTGGATTCCTAGGGCTCAATGGCCAGCCAGCCTATCTCTATCTGTGAGTCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp AAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATaGTACCTGCACAGGGCTAAGGTTTTCCTCTTCTCC +
Preference number: 3 (lower is better)
Translates to: KAAGTASPPHNK*YLHRAKVFLFS
Trigger: GGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp TTTGTACCATCAGATGGCAATGAGCAGTGTGGTGGATaGAACAGAGGGTACCTCCCAGCCCCTGGAGAGGTA +
Preference number: 3 (lower is better)
Translates to: FVPSDGNEQCGG*NRGYLPAPGEV
Trigger: TACCTCTCCAGGGGCTGGGAGGTACCCTCTGTTCCATCCACCACACTGCTCATTGCCATCTGATGGTACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp AGTTCCACCACTTTGTGTCACCTTTGTAGACCAGGCTaGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: SSTTLCHLCRPG*PRTQKSACLCL
Trigger: GAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGGTGACACAAAGTGGTGGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTCACTCTCAGGCAGTGTaGGACCACCTTGGCGTTGGA +
Preference number: 3 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPHSQAV*DHLGVG
Trigger: TCCAACGCCAAGGTGGTCCAACACTGCCTGAGAGTG...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp AGCTTCCCCAGCCTGTACAGAAGTCAAGAGGACCCTTaGCAGGAGAGGGACTCTGAGAAGCCATTTGATCTA +
Preference number: 3 (lower is better)
Translates to: SFPSLYRSQEDP*QERDSEKPFDL
Trigger: TAGATCAAATGGCTTCTCAGAGTCCCTCTCCTGCCAAGGGTCCTCTTGACTTCTGTACAGGCTGGGGAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GTGGAGGAGCTGCATTTAAACAAGAACGGTCATCAGTaGTCCAGTGAAGCCCTGAGCTCAGAGCTATGTGGG +
Preference number: 3 (lower is better)
Translates to: VEELHLNKNGHQ*SSEALSSELCG
Trigger: CCCACATAGCTCTGAGCTCAGGGCTTCACTGGACCACTGATGACCGTTCTTGTTTAAATGCAGCTCCTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp CTCCGCTCAATTGCTTCAAATCTTTGTAGACCAGGCTaGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: LRSIASNLCRPG*PRTQKSACLCL
Trigger: GAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGATTTGAAGCAATTGAGCGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR-3UTR CAA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCTTAAAGAAAAATTCCTaGCCTGGTTCTATCCTGTGG +
Preference number: 3 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCLKKNS*PGSILW
Trigger: CCACAGGATAGAACCAGGCAAGGAATTTTTCTTTAA...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGCTTCATAGAGGGAAATaGATAGCCCACTGCTGCCCA +
Preference number: 3 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLLHRGK*IAHCCP
Trigger: TGGGCAGCAGTGGGCTATCAATTTCCCTCTATGAAG...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp AATGTGTATCTCCATGCCCAGCTTTCTGTGTCCAGCTaGGCTTTCTCCTGCATAGCCGTGTGCCTGTATCAC +
Preference number: 3 (lower is better)
Translates to: NVYLHAQLSVSS*AFSCIAVCLYH
Trigger: GTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACAGAAAGCTGGGCATGGAGATACACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTaGCTCCACCTCCACCACCTCATTAACTCTTTACTT +
Preference number: 3 (lower is better)
Translates to: LSLVMYPELKAG*LHLHHLINSLL
Trigger: AAGTAAAGAGTTAATGAGGTGGTGGAGGTGGAGGCAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATaGCCAGCTTTCTGTGTCCAGCTGAGCTTTCTCCTG +
Preference number: 3 (lower is better)
Translates to: PLQCQDYKCVSP*PAFCVQLSFLL
Trigger: CAGGAGAAAGCTCAGCTGGACACAGAAAGCTGGGCATGGAGATACACATTTGTAATCCTGGCACTGGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CCTGTACTAGGCATTTGGATTCTAAGATCTCAGCTCTaGGAGGACTCAGCACCTCCTACTCCTCAAGTCAGG +
Preference number: 3 (lower is better)
Translates to: PVLGIWILRSQL*EDSAPPTPQVR
Trigger: CCTGACTTGAGGAGTAGGAGGTGCTGAGTCCTCCCAGAGCTGAGATCTTAGAATCCAAATGCCTAGTACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp ACATATACAGGTTCAAGAGGCACACTCCAGACTCCCTaGCAAGGTATAGTCTCAGCTAGCGAGAGCGAACAC +
Preference number: 3 (lower is better)
Translates to: TYTGSRGTLQTP*QGIVSASESEH
Trigger: GTGTTCGCTCTCGCTAGCTGAGACTATACCTTGCCAGGGAGTCTGGAGTGTGCCTCTTGAACCTGTATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp GCAGTGCCCACTTGTGGCCCCAGAGGGCCATCCACTTaGTCTGAAGATGTATGTCAAATACCTTCTATCCAA +
Preference number: 3 (lower is better)
Translates to: AVPTCGPRGPST*SEDVCQIPSIQ
Trigger: TTGGATAGAAGGTATTTGACATACATCTTCAGATCAAGTGGATGGCCCTCTGGGGCCACAAGTGGGCACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp CCAAAGGAAGACTTTCCTTATTCCCGAAGACTTCCCTaGCCTTGGCTTCATTCTCTCCTGTTCACGGTCAGG +
Preference number: 3 (lower is better)
Translates to: PKEDFPYSRRLP*PWLHSLLFTVR
Trigger: CCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR TCA 72 bp GCTGCATTTAAACAAGAACGGTCATCAGTGGTCCAGTaGAGCCCTGAGCTCAGAGCTATGTGGGCTCTGAAA +
Preference number: 3 (lower is better)
Translates to: AAFKQERSSVVQ*SPELRAMWALK
Trigger: TTTCAGAGCCCACATAGCTCTGAGCTCAGGGCTTCACTGGACCACTGATGACCGTTCTTGTTTAAATGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR GCA 72 bp ATTAACAGGTGTGAGGATACTGCTGTCCCCCTGGCATaGAGGAGTCCTATTGGCTATTGGACAACTAGGAGA +
Preference number: 3 (lower is better)
Translates to: INRCEDTAVPLA*RSPIGYWTTRR
Trigger: TCTCCTAGTTGTCCAATAGCCAATAGGACTCCTGCATGCCAGGGGGACAGCAGTATCCTCACACCTGTTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp AGATGGTACCTCTACGGCTTCCCTGTACTAGGCATTTaGATTCTAAGATCTCAGCTCTGGGAGGACTCAGCA +
Preference number: 3 (lower is better)
Translates to: RWYLYGFPVLGI*ILRSQLWEDSA
Trigger: TGCTGAGTCCTCCCAGAGCTGAGATCTTAGAATCCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp GAGGTAAGCTGTTTTGTAAACCGAAGTGCTGGGGTTTaGGGCCTATTATGTGATTCGGTCCTAGGCAGTCTC +
Preference number: 3 (lower is better)
Translates to: EVSCFVNRSAGV*GLLCDSVLGSL
Trigger: GAGACTGCCTAGGACCGAATCACATAATAGGCCCCAAACCCCAGCACTTCGGTTTACAAAACAGCTTACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp AAACGAGGAACCAAATACTCAAATGCTGGAGACTCCTaGACATCTCATTCACACCACCACCCCACCCAGACT +
Preference number: 3 (lower is better)
Translates to: KRGTKYSNAGDS*TSHSHHHPTQT
Trigger: AGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCAGGAGTCTCCAGCATTTGAGTATTTGGTTCCTCGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGGCAGGCAGGGCCACATaGATGCTGACCCTTCTCAGA +
Preference number: 3 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLAGRAT*MLTLLR
Trigger: TCTGAGAAGGGTCAGCATCAATGTGGCCCTGCCTGC...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp CAGATGGACCCAGTGGAGAGTGTCAAGGCTGGAAATTaGCTAGGAGTTCCACCACTTTGTGTCACCTTTGTA +
Preference number: 3 (lower is better)
Translates to: QMDPVESVKAGN*LGVPPLCVTFV
Trigger: TACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTGACACTCTCCACTGGGTCCATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR GCA 72 bp GAAGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTaGCTTGGGCTTCTGAATTTTGACTCCGCTCAATTG +
Preference number: 3 (lower is better)
Translates to: EGGSILFIAASL*LGLLNFDSAQL
Trigger: CAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp ATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTTaGGAGAAGGTGTCTAAGCCAGCCACTCTCAGGCAG +
Preference number: 3 (lower is better)
Translates to: IEISYLLRKGYC*EKVSKPATLRQ
Trigger: CTGCCTGAGAGTGGCTGGCTTAGACACCTTCTCCCAACAGTACCCTTTACGTAGGAGGTAGGATATTTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp AAGTCAAGCTATAAGGCTTCTTCAGCTTCTGTAGTCTaGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGC +
Preference number: 3 (lower is better)
Translates to: KSSYKASSASVV*AVTGNVPRAQG
Trigger: GCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGCTGAAGAAGCCTTATAGCTTGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp CCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGCCCAGCATCTATGTGCTCCATTaGGTGTTTTTCTCTTTGGTC +
Preference number: 3 (lower is better)
Translates to: PVSASPVPGLQMCISMPSIYVLH*VFFSLV
Trigger: GACCAAAGAGAAAAACACCAAATGGAGCACATAGAT...GCTGGGCATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp CATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTaGCTCCGCTCAATTGCTTCAAATCCTGGAATAGCA +
Preference number: 3 (lower is better)
Translates to: HSCLSVPWASEF*LRSIASNPGIA
Trigger: TGCTATTCCAGGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR CCA 72 bp CCCGGCATCGTTTCCTCATCTGTTAAGGGCAAGGTATaGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTG +
Preference number: 3 (lower is better)
Translates to: PGIVSSSVKGKV*ISQAIRLLQLL
Trigger: CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGATGAGGAAACGATGCCGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp CCAGAGTCAATCAATAACTACTACAAGAGCGAACAGTaGGCTGGGGTGGAGGAGCTGCATTTAAACAAGAAC +
Preference number: 3 (lower is better)
Translates to: PESINNYYKSEQ*AGVEELHLNKN
Trigger: GTTCTTGTTTAAATGCAGCTCCTCCACCCCAGCCCACTGTTCGCTCTTGTAGTAGTTATTGATTGACTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp TGGACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACTTAAAGAAAAATTCCTaGCCTGGTTCTATCCTGTGG +
Preference number: 3 (lower is better)
Translates to: WTSHSHHHPTQTQHPDHYLKKNS*PGSILW
Trigger: CCACAGGATAGAACCAGGCAAGGAATTTTTCTTTAA...GTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGCTTCTATCCAAAGGCTaGTTCCTTCTGTCCAGGACC +
Preference number: 3 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLLLSKG*FLLSRT
Trigger: GGTCCTGGACAGAAGGAACAAGCCTTTGGATAGAAG...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR TCA 72 bp CATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTaGCTCCGCTCAATTGCTTCAAATCTTTGTAGACCA +
Preference number: 3 (lower is better)
Translates to: HSCLSVPWASEF*LRSIASNLCRP
Trigger: TGGTCTACAAAGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR GCA 72 bp AATGGCTGTTCAGTACTGAAAAGAGCCCTACATAGATaGATACTTACTGTGTCACACCAGGAGGTTGAGGTG +
Preference number: 3 (lower is better)
Translates to: NGCSVLKRALHR*ILTVSHQEVEV
Trigger: CACCTCAACCTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGAACAGCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp TCCATTGTCTCAGATACTGTCCCTCAACCTGGACTTTaGCATGAGAAATGGCTGTTCAGTACTGAAAAGAGC +
Preference number: 3 (lower is better)
Translates to: SIVSDTVPQPGL*HEKWLFSTEKS
Trigger: GCTCTTTTCAGTACTGAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGGGACAGTATCTGAGACAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR CCA 72 bp TCATTCCCACTGATGGCTTTTAAAATAAGCTGCAGATaGTACCTCTACGGCTTCCCTGTACTAGGCATTTGG +
Preference number: 3 (lower is better)
Translates to: SFPLMAFKISCR*YLYGFPVLGIW
Trigger: CCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCTGCAGCTTATTTTAAAAGCCATCAGTGGGAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp GACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACAAATCTATGTGCTCCATTaGGTGTTTTTCTCTTTGGTC +
Preference number: 3 (lower is better)
Translates to: DISFTPPPHPDSTSRSLQIYVLH*VFFSLV
Trigger: GACCAAAGAGAAAAACACCAAATGGAGCACATAGAT...TTGTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR-3UTR CAA 90 bp AGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTTTGACTCCGCTCAATaGCTTCAAATCTTTGTAGAC +
Preference number: 3 (lower is better)
Translates to: RWIDLVHSCLSVPWASEFFDSAQ*LQIFVD
Trigger: GTCTACAAAGATTTGAAGCAATTGAGCGGAGTCAAA...AAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR-3UTR CAA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTAACTCTGTCCTCACTTaGACTTCTTTTCTTGAAATG +
Preference number: 3 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPNSVLT*TSFLEM
Trigger: CATTTCAAGAAAAGAAGTCAAAGTGAGGACAGAGTT...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR-3UTR CAA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGCAACCATTTAACACTTaGCCAGCATTCTCTTGCAGA +
Preference number: 3 (lower is better)
Translates to: SVLKRALHRCILTVSHQEQPFNT*PAFSCR
Trigger: TCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
3UTR GCA 72 bp CCCAGGCGGGTTCAGAACACATCTTTATTTAAGAACTaGTTGCTACCAGAGTCAATCAATAACTACTACAAG +
Preference number: 3 (lower is better)
Translates to: PRRVQNTSLFKN*LLPESINNYYK
Trigger: CTTGTAGTAGTTATTGATTGACTCTGGTAGCAAGCAGTTCTTAAATAAAGATGTGTTCTGAACCCGCCTGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CCA 72 bp CACAGATCTATGTGCTCCATTTGGTGTTTTTCTCTTTaGTCTCTTAGCAAGTCCTTCATGTTTCTCATGATA +
Preference number: 3 (lower is better)
Translates to: HRSMCSIWCFSL*SLSKSFMFLMI
Trigger: TATCATGAGAAACATGAAGGACTTGCTAAGAGACCAAAGAGAAAAACACCAAATGGAGCACATAGATCTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
CDS-3UTR CCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGTCAGCCAGCGCACCATaGGCCGAGGCTTGCCTGCCG +
Preference number: 4 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMSASAP*AEACLP
Trigger: CGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGA...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGGGCAGGGCGGACGGCTaGGCTCTCCACCATCATGCT +
Preference number: 4 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGGRADG*ALHHHA
Trigger: AGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCC...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
CDS-3UTR GCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGCTGCAGGGTGGGCTCTaGTGTGCCCCACTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGLQGGL*CAPLRG
Trigger: TCCCCTCAGTGGGGCACAGCAGAGCCCACCCTGCAG...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp CATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCAGTACACGATGGCAGTaGGGCTCTCGGGCCCATCCC +
Preference number: 4 (lower is better)
Translates to: HSDGRRLPLPWRVHEGSISTRWQ*GSRAHP
Trigger: GGGATGGGCCCGAGAGCCTCACTGCCATCGTGTACT...GATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGCTCGGACCAGGACTGTaGCCTCCTTGGATGCACCAT +
Preference number: 4 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMLGPGL*PPWMHH
Trigger: ATGGTGCATCCAAGGAGGCCACAGTCCTGGTCCGAG...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGAACCCCCAGGAGGACCTaGGGGACCTCGGACCAGGAC +
Preference number: 4 (lower is better)
Translates to: LIAHCCPCSCWAWDSHPRTPRRT*GTSDQD
Trigger: GTCCTGGTCCGAGGTCCCCCAGGTCCTCCTGGGGGT...TCTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATCTGCTTCCATTTCCCTaGGGGTGGAGTCCGCGCTTG +
Preference number: 4 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDLLPFP*GWSPRL
Trigger: CAAGCGCGGACTCCACCCTCAGGGAAATGGAAGCAG...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGCCACTGTCTGGGCCATaGATGTGTATGTCCCTCCGT +
Preference number: 4 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGPLSGP*MCMSLR
Trigger: ACGGAGGGACATACACATGCATGGCCCAGACAGTGG...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTTGCTGGAGGGGCCGCTaGGCTCCCCAGTGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: EGCWTISGVHGRENDHMACWRGR*APQCPR
Trigger: TCTTGGGCACTGGGGAGCCCAGCGGCCCCTCCAGCA...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGCCTTGGCCCAGACCTTaGCAGGGGCCACCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQPWPRP*QGPPWA
Trigger: AGCCCAAGGTGGCCCCTGCCAAGGTCTGGGCCAAGG...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCAGGATGAGGAACCCTTaGCCCAGACCTTGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: HSDGRRLPLPWRVHEGSIRMRNP*PRPWQG
Trigger: CCCCTGCCAAGGTCTGGGCCAAGGGTTCCTCATCCT...GATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGGTGGTGGGGGCTTCATaGTCATGGCATCAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGVVGAS*SWHQLK
Trigger: CTTCAGCTGATGCCATGACCATGAAGCCCCCACCAC...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCCTGCTTCCATTTCCCTaGGGGTGGAGTCCGCGCTTG +
Preference number: 4 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCLLPFP*GWSPRL
Trigger: CAAGCGCGGACTCCACCCTCAGGGAAATGGAAGCAG...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTGGGCAGGGCGGACGGCTaGGCTCTCCACCATCATGCT +
Preference number: 4 (lower is better)
Translates to: RSSKAAGTASPPHNKCYLGRADG*ALHHHA
Trigger: AGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCC...CAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTATCCAGGGTGACCTGCTaGCCAACCAGTGCGTACGTC +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLSRVTC*PTSAYV
Trigger: GACGTACGCACTGGTTGGGCAGCAGGTCACCCTGGA...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGCCACTGTCTGGGCCATaGATGTGTATGTCCCTCCGT +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARPLSGP*MCMSLR
Trigger: ACGGAGGGACATACACATGCATGGCCCAGACAGTGG...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGTGTACAGGTTCCCTGTaGTCTGGGACACGAAGTGAC +
Preference number: 4 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMCTGSL*SGTRSD
Trigger: GTCACTTCGTGTCCCAGACCACAGGGAACCTGTACA...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp TGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGAGCCCGTCTGGGACACGAAGTaGCGCCCATCCGTTGGGATG +
Preference number: 4 (lower is better)
Translates to: CWTISGVHGRENDHMAEPVWDTK*RPSVGM
Trigger: CATCCCAACGGATGGGCGTCACTTCGTGTCCCAGAC...GGGCTCAGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGCAAAGCACTCCAGGGTaGCCTGCTGCCCAACCAGTG +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQQSTPG*PAAQPV
Trigger: CACTGGTTGGGCAGCAGGTCACCCTGGAGTGCTTTG...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTACCACTTTGCGCCACTTaGTCCTGGGAACAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLPLCAT*SWEQGS
Trigger: GGAACCCTGTTCCCAGGATCAAGTGGCGCAAAGTGG...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATAGGATGGGGAGGGAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGACTAACACTGGGGATCTaGAGGGTGGGCTCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: IGWGGRDAGPSLGFTGGRLTLGI*RVGSAV
Trigger: CACAGCAGAGCCCACCCTGCAGATCCCCAGTGTTAG...TCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTCCCTCCCCATCCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp CACCTCCCCACAACAAATGCTACCTGCACAGGGCTAAGGTTTTCCTCTTCTCCACCATGGGCCGAGGCTTaGCTGCCGCAGCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: HLPTTNATCTGLRFSSSPPWAEA*LPQHSP
Trigger: GGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGG...TGGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGCAACTGGAGCTGCCTTaGCTGCGGAAGGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQQLELP*LRKDSR
Trigger: CCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTG...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GGCAGTGCCACCGGGGTGGTGAATGGGCTTCAGTCTGGTGCCCCTTTCCATCAGGTGACGCCCATCCGTTaGGATGAAGTTGGGGAACTC +
Preference number: 4 (lower is better)
Translates to: GSATGVVNGLQSGAPFHQVTPIR*DEVGEL
Trigger: GAGTTCCCCAACTTCATCCCAACGGATGGGCGTCAC...CTGATGGAAAGGGGCACCAGACTGAAGCCCATTCACCACCCCGGTGGCACTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCGTGGAGAAGTCCAGGTaGCTGGTAGCCAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCVEKSR*LVARQE
Trigger: CTCTTGCCTGGCTACCAGCCACCTGGACTTCTCCAC...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CCTGACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGCCCTGGGGATCTGCAGGGTaGGCTCTGCTGTGCCCCACT +
Preference number: 4 (lower is better)
Translates to: PDLGFILSCSRSGFSSLPWGSAG*ALLCPT
Trigger: AGTGGGGCACAGCAGAGCCCACCCTGCAGATCCCCA...GGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TCCGGGGACCCAAGAGAGTCCAGGCAGTTTGGGGAGCAGGTGTGGCCAGGTGATCGGTGTCACGGCCCTTaGAGTTCTCTGCCTCACATT +
Preference number: 4 (lower is better)
Translates to: SGDPRESRQFGEQVWPGDRCHGP*SSLPHI
Trigger: AATGTGAGGCAGAGAACTCCAAGGGCCGTGACACCG...ATCACCTGGCCACACCTGCTCCCCAAACTGCCTGGACTCTCTTGGGTCCCCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CCTCCACAGAGCCTCCCACAGGTGGGGAGGAGACTCTGGTTCTTGACCAAGCCTGGGTCATGCGAGGCGTaGCACTGTAGGGTCAGGTTA +
Preference number: 4 (lower is better)
Translates to: PPQSLPQVGRRLWFLTKPGSCEA*HCRVRL
Trigger: TAACCTGACCCTACAGTGCCACGCCTCGCATGACCC...AGGCTTGGTCAAGAACCAGAGTCTCCTCCCCACCTGTGGGAGGCTCTGTGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGCCCAGCTGCTGGAGGGGCCGCTaGGCTCCCCAGTGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: PVSASPVPGLQMCISMPSCWRGR*APQCPR
Trigger: TCTTGGGCACTGGGGAGCCCAGCGGCCCCTCCAGCA...GCTGGGCATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGCCTTGGCCCAGACCTTaGCAGGGGCCACCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLPWPRP*QGPPWA
Trigger: AGCCCAAGGTGGCCCCTGCCAAGGTCTGGGCCAAGG...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGATCTGCACCAGAGCGTaGCCAATGTCTTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARICTRA*PMSSGT
Trigger: AGTACCTGAAGACATTGGTCACGCTCTGGTGCAGAT...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTGGCAGGGCGGACGGCTaGGCTCTCCACCATCATGCT +
Preference number: 4 (lower is better)
Translates to: LHHLINSLLPGTQESPGSGRADG*ALHHHA
Trigger: AGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCC...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
ENSMUST00000189528.7
CDS-3UTR GCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTGGGTGGGCTCTGCTGTaGCCCACTGAGGGGACAAGG +
Preference number: 4 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTGWALL*PTEGTR
Trigger: CCTTGTCCCCTCAGTGGGGCACAGCAGAGCCCACCC...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTGGGCCGAGGCTTGCCTaGCGCAGCACAGCCCCAACG +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPGPRLA*RSTAPT
Trigger: CGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCC...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTACCACACACTGGTACATaGCGGAGTCCTCCAGGTTCA +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLPHTGT*RSPPGS
Trigger: TGAACCTGGAGGACTCCGGCATGTACCAGTGTGTGG...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGCATATCCCAGGAGGATaGCGTTCATGTCTTGTAGCA +
Preference number: 4 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMHIPGG*RSCLVA
Trigger: TGCTACAAGACATGAACGGCATCCTCCTGGGATATG...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGCATATCCCAGGAGGATaGCGTTCATGTCTTGTAGCA +
Preference number: 4 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGHIPGG*RSCLVA
Trigger: TGCTACAAGACATGAACGGCATCCTCCTGGGATATG...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTATGGTCTCCTTCACACTaGCTCTCCGGTAGTGACCTC +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLWSPSH*LSGSDL
Trigger: GAGGTCACTACCGGAGAGCCAGTGTGAAGGAGACCA...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGGGGTGTACTTGGCAATaGGGCTGTGATTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARGCTWQ*GCDCQS
Trigger: GCTTTGACAATCACAGCCCCATTGCCAAGTACACCC...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGCTTGCAGGGTGTACTTaGCAATGGGGCTGTGATTGT +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARLAGCT*QWGCDC
Trigger: ACAATCACAGCCCCATTGCCAAGTACACCCTGCAAG...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GCTGCCCTGGATGGCAGAGCCACTCATTTGTACCATCAGATGGCAATGAGCAGTGGGCCGTCTGCCAACTaGAGCTGCCTTGCCTGCGGA +
Preference number: 4 (lower is better)
Translates to: AALDGRATHLYHQMAMSSGPSAN*SCLACG
Trigger: TCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCC...ACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTAGTGGTGGGGGCTTCATaGTCATGGCATCAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLVVGAS*SWHQLK
Trigger: CTTCAGCTGATGCCATGACCATGAAGCCCCCACCAC...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTGAAGTCCAGGAGATGTTaGCAGGAGGTCGCCGTGGTG +
Preference number: 4 (lower is better)
Translates to: RSSKAAGTASPPHNKCYLKSRRC*QEVAVV
Trigger: CACCACGGCGACCTCCTGGCAACATCTCCTGGACTT...CAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGCCACCATCATGCTGGTaGCTCCATTTCTCACAATGT +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARPPSCW*LHFSQC
Trigger: ACATTGTGAGAAATGGAGGCACCAGCATGATGGTGG...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTGGCGGTAGGACAAACCTaGGTAGTGGGCAGGTGGGTT +
Preference number: 4 (lower is better)
Translates to: RSSKAAGTASPPHNKCYLAVGQT*VVGRWV
Trigger: AACCCACCTGCCCACTACCCAGGTTTGTCCTACCGC...CAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTACCCCCAGGAGGACCTaGGGGACCTCGGACCAGGAC +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPTPRRT*GTSDQD
Trigger: GTCCTGGTCCGAGGTCCCCCAGGTCCTCCTGGGGGT...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGTCTCCACCATCATGCTaGTGCCTCCATTTCTCACAA +
Preference number: 4 (lower is better)
Translates to: CRGATKPTWGLTGASPARSPPSC*CLHFSQ
Trigger: TTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGA...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
3UTR CAA 72 bp CTCAGAGCTATGTGGGCTCTGAAACCGGGGGCTAAGTaGGAGGTATCTGGTGCCAAGGCAGGTTGCGTTCCC +
Preference number: 4 (lower is better)
Translates to: LRAMWALKPGAK*EVSGAKAGCVP
Trigger: GGGAACGCAACCTGCCTTGGCACCAGATACCTCCAACTTAGCCCCCGGTTTCAGAGCCCACATAGCTCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGGGTGGAGTCCGCGCTTaGAGGGTGTACTTGGCAATG +
Preference number: 4 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLGGVRA*RVYLAM
Trigger: CATTGCCAAGTACACCCTGCAAGCGCGGACTCCACC...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGGGATTGGTCCGAACCTaGTTCCATTTCCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQGLVRT*FHFPEG
Trigger: ACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCC...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCAGCTCTCCACCATCATaGTGGTGCCTCCATTTCTCA +
Preference number: 4 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCSSPPS*WCLHFS
Trigger: TGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCT...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TGGACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACGGGCCGTCTGCCAACTaGAGCTGCCTTGCCTGCGGA +
Preference number: 4 (lower is better)
Translates to: WTSHSHHHPTQTQHPDHYGPSAN*SCLACG
Trigger: TCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCC...GTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GGGTCTGTGATGGCAGAGGTCGCTGGTGGCAGAGGGCTGAAGCACCAGGTGAGACCATTTCTCACAATGTaGACTTCGGCTGGTATCCCA +
Preference number: 4 (lower is better)
Translates to: GSVMAEVAGGRGLKHQVRPFLTM*TSAGIP
Trigger: TGGGATACCAGCCGAAGTCCACATTGTGAGAAATGG...TCTCACCTGGTGCTTCAGCCCTCTGCCACCAGCGACCTCTGCCATCACAGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTGGGCTCTTCCTCTGCTaGGTACACGATGGCAGTGAG +
Preference number: 4 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTGLFLC*VHDGSE
Trigger: CTCACTGCCATCGTGTACTCAGCAGAGGAAGAGCCC...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp TGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGAGCCCATCTGCACCAGAGCGTaGCCAATGTCTTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: CWTISGVHGRENDHMAEPICTRA*PMSSGT
Trigger: AGTACCTGAAGACATTGGTCACGCTCTGGTGCAGAT...GGGCTCAGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGCAGCAGCAGCAAGCTTaGCCTTTTCCTGGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLQQQQA*PFPGRC
Trigger: GCACCGGCCAGGAAAAGGGCAAGCTTGCTGCTGCTG...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGGCCATGCTTGTTTTCTaGCACACACTGGTACATGCC +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQAMLVF*HTLVHA
Trigger: GGCATGTACCAGTGTGTGGCAGAAAACAAGCATGGC...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTTCCATAGTGGGGTCATaGGAGGCGTGGCACTGTAGG +
Preference number: 4 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTSIVGS*EAWHCR
Trigger: CCTACAGTGCCACGCCTCGCATGACCCCACTATGGA...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGTGTGGCCTCCTTGGATaGACCATCCACCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLCGLLG*TIHHCL
Trigger: CAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACA...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTGGTGGAGTCCGCGCTTaGAGGGTGTACTTGGCAATG +
Preference number: 4 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTGGVRA*RVYLAM
Trigger: CATTGCCAAGTACACCCTGCAAGCGCGGACTCCACC...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGGGTCCAAAGGTAGCTaGGGTTCCCTGGGAAAAACT +
Preference number: 4 (lower is better)
Translates to: EGCWTISGVHGRENDHMAGSKGS*GSLGKT
Trigger: AGTTTTTCCCAGGGAACCCCAGCTACCTTTGGACCC...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp GCAACTCGAGACAAGCCCTTTAGTCACATAGCCACCTCAAGTGGCCCTGTCACTCAGTGCGTACGTCTCTaGGGGGAACCGGGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: ATRDKPFSHIATSSGPVTQCVRL*GEPGFD
Trigger: ATCAAAGCCCGGTTCCCCCCAGAGACGTACGCACTG...AGTGACAGGGCCACTTGAGGTGGCTATGTGACTAAAGGGCTTGTCTCGAGTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTTTTTCTGCCACACACTaGTACATGCCGGAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: EGCWTISGVHGRENDHMAFSATH*YMPESS
Trigger: GGAGGACTCCGGCATGTACCAGTGTGTGGCAGAAAA...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CCTGACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGCCCCCATCCACCACTGTCTaGGCCATGCATGTGTATGTC +
Preference number: 4 (lower is better)
Translates to: PDLGFILSCSRSGFSSLPPSTTV*AMHVYV
Trigger: GACATACACATGCATGGCCCAGACAGTGGTGGATGG...GGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CGAAGCTCCAAAGCTGCTGGCACAGCCTCACCTCCCCACAACAAATGCTACCTGCAGTTACATGGTACTTaGTGTTGGGGTACAGGCCGG +
Preference number: 4 (lower is better)
Translates to: RSSKAAGTASPPHNKCYLQLHGT*CWGTGR
Trigger: CCGGCCTGTACCCCAACACCAAGTACCATGTAACTG...CAGGTAGCATTTGTTGTGGGGAGGTGAGGCTGTGCCAGCAGCTTTGGAGCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ACCATTCCATCTGGAGGATGGCAGGGATGGCAGTGCTGGCTGAGAGGGCAGTGCCCATTTCTCACAATGTaGACTTCGGCTGGTATCCCA +
Preference number: 4 (lower is better)
Translates to: TIPSGGWQGWQCWLRGQCPFLTM*TSAGIP
Trigger: TGGGATACCAGCCGAAGTCCACATTGTGAGAAATGG...GCACTGCCCTCTCAGCCAGCACTGCCATCCCTGCCATCCTCCAGATGGAATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
3UTR CAA 72 bp GGGTCACCTGCTGCCCTGGATGGCAGAGCCACTCATTaGTACCATCAGATGGCAATGAGCAGTGTGGTGGAT +
Preference number: 4 (lower is better)
Translates to: GSPAALDGRATH*YHQMAMSSVVD
Trigger: ATCCACCACACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGCAGGTGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTGCTGCGCGAATTTGCTaGAGACGCTCTTGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: LHHLINSLLPGTQESPGSAARIC*RRSWWR
Trigger: TCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGC...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTTGTTGGCTTTGCCCATaGAGTTCTCAGCAAAGCAGG +
Preference number: 4 (lower is better)
Translates to: EGCWTISGVHGRENDHMACWLCP*SSQQSR
Trigger: CCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACA...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp CTCAGGGCATGGACACTGGCGACTTCTGGTCGGGCTGCACAGAGTCCTGGTCTACAAGATGTTGCTAGCTaGAACCCGAAACTCATAGTC +
Preference number: 4 (lower is better)
Translates to: LRAWTLATSGRAAQSPGLQDVAS*NPKLIV
Trigger: GACTATGAGTTTCGGGTTTCAGCTAGCAACATCTTG...TAGACCAGGACTCTGTGCAGCCCGACCAGAAGTCGCCAGTGTCCATGCCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGAGTACACGATGGCAGTaGGGCTCTCGGGCCCATCCC +
Preference number: 4 (lower is better)
Translates to: NPPVSASPVPGLQMCISMSTRWQ*GSRAHP
Trigger: GGGATGGGCCCGAGAGCCTCACTGCCATCGTGTACT...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTGGTCCGAGGCATTGGTaGGGGCGATGTACAGGTTCC +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPGPRHW*GRCTGS
Trigger: GGAACCTGTACATCGCCCGCACCAATGCCTCGGACC...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTCACTCCAGGGTGACCTaGTGCCCAACCAGTGCGTAC +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPHSRVT*CPTSAY
Trigger: GTACGCACTGGTTGGGCAGCAGGTCACCCTGGAGTG...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp CCTGACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGCCCGCCCTTGGAGTTCTCTaGCTCACATTCATAGGTACC +
Preference number: 4 (lower is better)
Translates to: PDLGFILSCSRSGFSSLPALGVL*LTFIGT
Trigger: GGTACCTATGAATGTGAGGCAGAGAACTCCAAGGGC...GGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTCGCCTCACAGGGTTCTaGCTGAAGTCTGGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPRLTGF*LKSGAR
Trigger: TCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGGCG...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp TGTGTCCAGCTGAGCTTTCTCCTGCATAGCCGTGTGCCTGTATCACACCCGAGAGGATTGGTCCGAACCTaGTTCCATTTCCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: CVQLSFLLHSRVPVSHPRGLVRT*FHFPEG
Trigger: ACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCC...TCTCGGGTGTGATACAGGCACACGGCTATGCAGGAGAAAGCTCAGCTGGACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGGGACTGTGGCCTCCTTaGATGCACCATCCACCACTG +
Preference number: 4 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLGLWPP*MHHPPL
Trigger: CAGTGGTGGATGGTGCATCCAAGGAGGCCACAGTCC...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGAAGCAGAGGGCTCATCCTTGGCAGGGGCCACCTTaGGCTCTTCCTCTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: IHVDLLSTLNLLKQRAHPWQGPP*ALPLLS
Trigger: ACTCAGCAGAGGAAGAGCCCAAGGTGGCCCCTGCCA...AGGATGAGCCCTCTGCTTCAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGGTGGAGCATAGGAGTTaGCTGCAGGTCATTCTGATA +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQVEHRS*LQVILI
Trigger: TATCAGAATGACCTGCAGCCAACTCCTATGCTCCAC...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTAATGTGGACTTCGGCTaGTATCCCATCCCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LHHLINSLLPGTQESPGSNVDFG*YPIPSR
Trigger: CCTGGAGGGGATGGGATACCAGCCGAAGTCCACATT...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp ATTGATAGCCCACTGCTGCCCATGTTCCTGCTGGGCCTGGGACTCTCATCCCAGCAAGATGTTGCTAGCTaGAACCCGAAACTCATAGTC +
Preference number: 4 (lower is better)
Translates to: IDSPLLPMFLLGLGLSSQQDVAS*NPKLIV
Trigger: GACTATGAGTTTCGGGTTTCAGCTAGCAACATCTTG...CTGGGATGAGAGTCCCAGGCCCAGCAGGAACATGGGCAGCAGTGGGCTATCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGTGTGGCCTCCTTGGATaGACCATCCACCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLCGLLG*TIHHCL
Trigger: CAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACA...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTCAACTGGAGCTGCCTTaGCTGCGGAAGGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPQLELP*LRKDSR
Trigger: CCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTG...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGAAGCCGTCTCCATTCTaGTACTCTCGTGACATGGGA +
Preference number: 4 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLKPSPF*YSRDMG
Trigger: TCCCATGTCACGAGAGTACCAGAATGGAGACGGCTT...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGTGGCAGGGGCCACCTTaGGCTCTTCCTCTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: NPPVSASPVPGLQMCISMWQGPP*ALPLLS
Trigger: ACTCAGCAGAGGAAGAGCCCAAGGTGGCCCCTGCCA...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTAGGATGAGGAACCCTTaGCCCAGACCTTGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPRMRNP*PRPWQG
Trigger: CCCCTGCCAAGGTCTGGGCCAAGGGTTCCTCATCCT...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTCACGCCAGTGTCACCTaGTCCTCTGCAGACTCCTCT +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPHASVT*SSADSS
Trigger: AGAGGAGTCTGCAGAGGATCAGGTGACACTGGCGTG...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTAGTTGGGGAACTCGTTaGGGAGCCAGCGGTAGGACA +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPSWGTR*GASGRT
Trigger: TGTCCTACCGCTGGCTCCTCAACGAGTTCCCCAACT...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp TTTTCCTCTTCTCCAGTCTCCCAGCAGCTTGCCTGCTTTTCATGGACCTTGTTATCACAGGGTTCTGCCTaGAGTCTGGGGCCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: FSSSPVSQQLACFSWTLLSQGSA*SLGPEL
Trigger: AAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGA...TAACAAGGTCCATGAAAAGCAGGCAAGCTGCTGGGAGACTGGAGAAGAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGCACTGGCATAGATGGTaGCATGCTTGTTTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLHWHRW*HACFLP
Trigger: TGGCAGAAAACAAGCATGGCACCATCTATGCCAGTG...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TTTTCCTCTTCTCCAGTCTCCCAGCAGCTTGCCTGCTTTTCATGGACCTTGTTATGGGTAGTGGGCAGGTaGGTTACAGGGCAGCATCAC +
Preference number: 4 (lower is better)
Translates to: FSSSPVSQQLACFSWTLLWVVGR*VTGQHH
Trigger: GTGATGCTGCCCTGTAACCCACCTGCCCACTACCCA...TAACAAGGTCCATGAAAAGCAGGCAAGCTGCTGGGAGACTGGAGAAGAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp GACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACAAGGGTCATGCGAGGCGTaGCACTGTAGGGTCAGGTTA +
Preference number: 4 (lower is better)
Translates to: DISFTPPPHPDSTSRSLQGSCEA*HCRVRL
Trigger: TAACCTGACCCTACAGTGCCACGCCTCGCATGACCC...TTGTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CTCCACCACCTCATTAACTCTTTACTTCCGGGGACCCAAGAGAGTCCAGGCAGTAAGCCGTCTCCATTCTaGTACTCTCGTGACATGGGA +
Preference number: 4 (lower is better)
Translates to: LHHLINSLLPGTQESPGSKPSPF*YSRDMG
Trigger: TCCCATGTCACGAGAGTACCAGAATGGAGACGGCTT...ACTGCCTGGACTCTCTTGGGTCCCCGGAAGTAAAGAGTTAATGAGGTGGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp CACCTCCCCACAACAAATGCTACCTGCACAGGGCTAAGGTTTTCCTCTTCTCCAGCTGAGGCTGGAACTTaGGAAAGTCCAGGAGATGTT +
Preference number: 4 (lower is better)
Translates to: HLPTTNATCTGLRFSSSPAEAGT*ESPGDV
Trigger: AACATCTCCTGGACTTTCTCAAGTTCCAGCCTCAGC...TGGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTTGGCTTCATTCTCTCCTGCAGCCAGGTTGAGCTaGGCGAATTTGCTGAAGACG +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLTLASFSPAARLS*ANLLKT
Trigger: CGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGC...AGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GCTGCCCTGGATGGCAGAGCCACTCATTTGTACCATCAGATGGCAATGAGCAGTCCACCATCATGCTGGTaGCTCCATTTCTCACAATGT +
Preference number: 4 (lower is better)
Translates to: AALDGRATHLYHQMAMSSPPSCW*LHFSQC
Trigger: ACATTGTGAGAAATGGAGGCACCAGCATGATGGTGG...ACTGCTCATTGCCATCTGATGGTACAAATGAGTGGCTCTGCCATCCAGGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TGGACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACCCATCCACCACTGTCTaGGCCATGCATGTGTATGTC +
Preference number: 4 (lower is better)
Translates to: WTSHSHHHPTQTQHPDHYPSTTV*AMHVYV
Trigger: GACATACACATGCATGGCCCAGACAGTGGTGGATGG...GTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGGGGTGTACTTGGCAATaGGGCTGTGATTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLGCTWQ*GCDCQS
Trigger: GCTTTGACAATCACAGCCCCATTGCCAAGTACACCC...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CACCTCCCCACAACAAATGCTACCTGCACAGGGCTAAGGTTTTCCTCTTCTCCACTTGCAGGGTGTACTTaGCAATGGGGCTGTGATTGT +
Preference number: 4 (lower is better)
Translates to: HLPTTNATCTGLRFSSSPLAGCT*QWGCDC
Trigger: ACAATCACAGCCCCATTGCCAAGTACACCCTGCAAG...TGGAGAAGAGGAAAACCTTAGCCCTGTGCAGGTAGCATTTGTTGTGGGGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 72 bp CAGATGGTACCTCTACGGCTTCCCTGTACTAGGCATTaGGATTCTAAGATCTCAGCTCTGGGAGGACTCAGC +
Preference number: 4 (lower is better)
Translates to: QMVPLRLPCTRH*DSKISALGGLS
Trigger: GCTGAGTCCTCCCAGAGCTGAGATCTTAGAATCCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp CCTTTCTGGACCTCCATTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCGACTCCAGCTAAGCTaGACAGTAGTGTCTCCAATG +
Preference number: 4 (lower is better)
Translates to: PFWTSIFKTGFLCIALAVRLQLS*TVVSPM
Trigger: CATTGGAGACACTACTGTTCAGCTTAGCTGGAGTCG...GACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATGGAGGTCCAGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGAAGTCCAGGAGATGTTaGCAGGAGGTCGCCGTGGTG +
Preference number: 4 (lower is better)
Translates to: SVLKRALHRCILTVSHQEKSRRC*QEVAVV
Trigger: CACCACGGCGACCTCCTGGCAACATCTCCTGGACTT...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGCTCGGACCAGGACTGTaGCCTCCTTGGATGCACCAT +
Preference number: 4 (lower is better)
Translates to: SVLKRALHRCILTVSHQELGPGL*PPWMHH
Trigger: ATGGTGCATCCAAGGAGGCCACAGTCCTGGTCCGAG...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CCCTTGTATGTGAGATGCTGGGAGCAGAAGAGGGAGGGTTTAATCAGCTCCAAGTCTCCACCATCATGCTaGTGCCTCCATTTCTCACAA +
Preference number: 4 (lower is better)
Translates to: PLYVRCWEQKREGLISSKSPPSC*CLHFSQ
Trigger: TTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGA...CTTGGAGCTGATTAAACCCTCCCTCTTCTGCTCCCAGCATCTCACATACAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 72 bp GGAAGACTTTCCTTATTCCCGAAGACTTCCCTGACCTaGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: GRLSLFPKTSLT*ASFSPVHGQAS
Trigger: AGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGGGAAGTCTTCGGGAATAAGGAAAGTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 72 bp TCCTACTCCTCAAGTCAGGACTTCACCCAACCAGGATaGGACAGAACACCGAAACACCTCAAAGGTTACCCA +
Preference number: 4 (lower is better)
Translates to: SYSSSQDFTQPG*DRTPKHLKGYP
Trigger: TGGGTAACCTTTGAGGTGTTTCGGTGTTCTGTCCAATCCTGGTTGGGTGAAGTCCTGACTTGAGGAGTAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
3UTR CAA 72 bp TGTCAAGGCTGGAAATTGACTAGGAGTTCCACCACTTaGTGTCACCTTTGTAGACCAGGCTGGCCTCGAACT +
Preference number: 4 (lower is better)
Translates to: CQGWKLTRSSTT*CHLCRPGWPRT
Trigger: AGTTCGAGGCCAGCCTGGTCTACAAAGGTGACACAAAGTGGTGGAACTCCTAGTCAATTTCCAGCCTTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189528.7
3UTR CAA 72 bp TTGCAGACCAATAGTCAAGTCGAAGGTGGATCGATCTaGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LQTNSQVEGGSI*FIAASLCLGLL
Trigger: CAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCTTCGACTTGACTATTGGTCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188065.7
ENSMUST00000189528.7
CDS-3UTR TCA 90 bp GTTCTATCCTGTGGCAGAATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTGGGGGAACCGGGCTTTaGTACTGGGAGCAAAGAGTC +
Preference number: 4 (lower is better)
Translates to: VLSCGRIEISYLLRKGYCGGTGL*YWEQRV
Trigger: GACTCTTTGCTCCCAGTATCAAAGCCCGGTTCCCCC...ACAGTACCCTTTACGTAGGAGGTAGGATATTTCTATTCTGCCACAGGATAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR TCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGCGACTCCAGCTAAGCTaGACAGTAGTGTCTCCAATG +
Preference number: 4 (lower is better)
Translates to: NPPVSASPVPGLQMCISMRLQLS*TVVSPM
Trigger: CATTGGAGACACTACTGTTCAGCTTAGCTGGAGTCG...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGGGGCTCTTCCTCTGCTaGGTACACGATGGCAGTGAG +
Preference number: 4 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLGLFLC*VHDGSE
Trigger: CTCACTGCCATCGTGTACTCAGCAGAGGAAGAGCCC...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp CCTTTCTGGACCTCCATTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCCAGGTTCATCTCTGTaGCGTTCATCTTCCACCTAT +
Preference number: 4 (lower is better)
Translates to: PFWTSIFKTGFLCIALAVPGSSL*RSSSTY
Trigger: ATAGGTGGAAGATGAACGGCACAGAGATGAACCTGG...GACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATGGAGGTCCAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR GCA 90 bp GTTCTATCCTGTGGCAGAATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTTCCATAGTGGGGTCATaGGAGGCGTGGCACTGTAGG +
Preference number: 4 (lower is better)
Translates to: VLSCGRIEISYLLRKGYCSIVGS*EAWHCR
Trigger: CCTACAGTGCCACGCCTCGCATGACCCCACTATGGA...ACAGTACCCTTTACGTAGGAGGTAGGATATTTCTATTCTGCCACAGGATAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGGGACTGTGGCCTCCTTaGATGCACCATCCACCACTG +
Preference number: 4 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKGLWPP*MHHPPL
Trigger: CAGTGGTGGATGGTGCATCCAAGGAGGCCACAGTCC...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp AATCCACCTGTCTCTGCCTCTCCAGTGCCAGGATTACAAATGTGTATCTCCATGGCCCTCACAGTTACATaGTACTTGGTGTTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: NPPVSASPVPGLQMCISMALTVT*YLVLGY
Trigger: GTACCCCAACACCAAGTACCATGTAACTGTGAGGGC...CATGGAGATACACATTTGTAATCCTGGCACTGGAGAGGCAGAGACAGGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR CAA 72 bp CTGTGCCTTGGGCTTCTGAATTTTGACTCCGCTCAATaGCTTCAAATCTTTGTAGACCAGGCTGGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: LCLGLLNFDSAQ*LQIFVDQAGLE
Trigger: TTCGAGGCCAGCCTGGTCTACAAAGATTTGAAGCAATTGAGCGGAGTCAAAATTCAGAAGCCCAAGGCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CTGCAGATGGTACCTCTACGGCTTCCCTGTACTAGGCATTTGGATTCTAAGATCGGTCTCTCTCCTCCTTaGAGAATTCCTGTAGAAAGC +
Preference number: 4 (lower is better)
Translates to: LQMVPLRLPCTRHLDSKIGLSPP*RIPVES
Trigger: GCTTTCTACAGGAATTCTCCAAGGAGGAGAGAGACC...GATCTTAGAATCCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCTGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGCAGCCAGCTCAGCACTaGCATAGATGGTGCCATGCT +
Preference number: 4 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLQPAQH*HRWCHA
Trigger: AGCATGGCACCATCTATGCCAGTGCTGAGCTGGCTG...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGTGGTCTCCTTCACACTaGCTCTCCGGTAGTGACCTC +
Preference number: 4 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKWSPSH*LSGSDL
Trigger: GAGGTCACTACCGGAGAGCCAGTGTGAAGGAGACCA...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGAATGTGGACTTCGGCTaGTATCCCATCCCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLNVDFG*YPIPSR
Trigger: CCTGGAGGGGATGGGATACCAGCCGAAGTCCACATT...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGCAGTTACATGGTACTTaGTGTTGGGGTACAGGCCGG +
Preference number: 4 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKQLHGT*CWGTGR
Trigger: CCGGCCTGTACCCCAACACCAAGTACCATGTAACTG...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR TCA 90 bp CAACCATTTAACACTTTGCCAGCATTCTCTTGCAGACCAATAGTCAAGTCGAAGGCTGAGGCTGGAACTTaGGAAAGTCCAGGAGATGTT +
Preference number: 4 (lower is better)
Translates to: QPFNTLPAFSCRPIVKSKAEAGT*ESPGDV
Trigger: AACATCTCCTGGACTTTCTCAAGTTCCAGCCTCAGC...CTTCGACTTGACTATTGGTCTGCAAGAGAATGCTGGCAAAGTGTTAAATGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR GCA 90 bp GTTCTATCCTGTGGCAGAATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTAGCTCTCCACCATCATaGTGGTGCCTCCATTTCTCA +
Preference number: 4 (lower is better)
Translates to: VLSCGRIEISYLLRKGYCSSPPS*WCLHFS
Trigger: TGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCT...ACAGTACCCTTTACGTAGGAGGTAGGATATTTCTATTCTGCCACAGGATAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGGCCCTCACAGTTACATaGTACTTGGTGTTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLALTVT*YLVLGY
Trigger: GTACCCCAACACCAAGTACCATGTAACTGTGAGGGC...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CCA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGGTGGAGCATAGGAGTTaGCTGCAGGTCATTCTGATA +
Preference number: 4 (lower is better)
Translates to: SVLKRALHRCILTVSHQEVEHRS*LQVILI
Trigger: TATCAGAATGACCTGCAGCCAACTCCTATGCTCCAC...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
3UTR CAA 72 bp GCACAGAGTCCTGGTCTAGGGAACTCTGTCCTCACTTaGACTTCTTTTCTTGAAATGAAAAGAGAGAGCCTG +
Preference number: 4 (lower is better)
Translates to: AQSPGLGNSVLT*TSFLEMKRESL
Trigger: CAGGCTCTCTCTTTTCATTTCAAGAAAAGAAGTCAAAGTGAGGACAGAGTTCCCTAGACCAGGACTCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGCCCTTGGCCCAGACCTaGGCAGGGGCCACCTTGGGC +
Preference number: 5 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGPLAQT*AGATLG
Trigger: GCCCAAGGTGGCCCCTGCCAAGGTCTGGGCCAAGGG...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp ACTGGGTATCAGCGCCGGGCACCCGGGCCGTCTGCCAACTGGAGCTaGCTTGCCTGCGGAAGGACAGCAGGTAGCCGAAGCCGTCTCCAT +
Preference number: 5 (lower is better)
Translates to: TGYQRRAPGPSANWS*LACGRTAGSRSRLH
Trigger: ATGGAGACGGCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGCGCTGATACCCAGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 90 bp CGAAGTACTGGGTATCAGCGCCGGGCACCCGGGCCGTCTGCCAACTaGAGCTGCCTTGCCTGCGGAAGGACAGCAGGTAGCCGAAGCCGT +
Preference number: 5 (lower is better)
Translates to: RSTGYQRRAPGPSAN*SCLACGRTAGSRSR
Trigger: ACGGCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGCGCTGATACCCAGTACTTCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 90 bp GCCAGGAGGTCGCCGTGGTGGGGGCTTCATGGTCATGGCATCAGCTaGAGGGCTAGCTGGTCCGGTGCCAGCCCTGTTGTAGGCCCTCAC +
Preference number: 5 (lower is better)
Translates to: ARRSPWWGLHGHGIS*RASWSGASPVVGPH
Trigger: GTGAGGGCCTACAACAGGGCTGGCACCGGACCAGCTAGCCCTTCAGCTGATGCCATGACCATGAAGCCCCCACCACGGCGACCTCCTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 90 bp GGTTCTGGGAGGCCAGAGGTTCCCCGTTTCTCAGCCAGCGCACCATaGGCCGAGGCTTGCCTGCCGCAGCACAGCCCCAACGTAAGTTGG +
Preference number: 5 (lower is better)
Translates to: GSGRPEVPRFSASAP*AEACLPQHSPNVSW
Trigger: CCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGGCCTCCCAGAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGTTGGCAGGGGCCACCTaGGGCTCTTCCTCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGLAGAT*GSSSAE
Trigger: CTCAGCAGAGGAAGAGCCCAAGGTGGCCCCTGCCAA...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGGAGGATGAGGAACCCTaGGCCCAGACCTTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGEDEEP*AQTLAG
Trigger: CCCTGCCAAGGTCTGGGCCAAGGGTTCCTCATCCTC...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 90 bp CTCCCCCTCGGGCTGCAGGGATCAGCCGCCTCACAGGGTTCTGCCTaGAGTCTGGGGCCAGAGCTTGTACAGCCAGCTCAGCACTGGCAT +
Preference number: 5 (lower is better)
Translates to: LPLGLQGSAASQGSA*SLGPELVQPAQHWH
Trigger: ATGCCAGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCCGAGGGGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGGAGGATGAGGAACCCTaGGCCCAGACCTTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: CRGATKPTWGLTGASPAREDEEP*AQTLAG
Trigger: CCCTGCCAAGGTCTGGGCCAAGGGTTCCTCATCCTC...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp CCAGAGGTTCCCCGTTTCTCAGCCAGCGCACCATGGGCCGAGGCTTaGCTGCCGCAGCACAGCCCCAACGTAAGTTGGAACCAATGTCGG +
Preference number: 5 (lower is better)
Translates to: PEVPRFSASAPWAEA*LPQHSPNVSWNQCR
Trigger: CCGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 90 bp ATCTCTCCCCCTCGGGCTGCAGGGATCAGCCGCCTCACAGGGTTCTaGCTGAAGTCTGGGGCCAGAGCTTGTACAGCCAGCTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: ISPPRAAGISRLTGF*LKSGARACTASSAL
Trigger: CAGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCCGAGGGGGAGAGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 90 bp CCCCAGGAGGACCTGGGGGACCTCGGACCAGGACTGTGGCCTCCTTaGATGCACCATCCACCACTGTCTGGGCCATGCATGTGTATGTCC +
Preference number: 5 (lower is better)
Translates to: PQEDLGDLGPGLWPP*MHHPPLSGPCMCMS
Trigger: GGACATACACATGCATGGCCCAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACAGTCCTGGTCCGAGGTCCCCCAGGTCCTCCTGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 90 bp CCGGCGAGCATCAGTATAACCATGCAGGAGAACACCGGGCCAGGATaGGCAGGGCGGACGGCTGAGCTCTCCACCATCATGCTGGTGCCT +
Preference number: 5 (lower is better)
Translates to: PASISITMQENTGPG*AGRTAELSTIMLVP
Trigger: AGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTGGCCCGGTGTTCTCCTGCATGGTTATACTGATGCTCGCCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp GCACGGCATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAAAGTCCAGGAGATGTaGCCAGGAGGTCGCCGTGGT +
Preference number: 5 (lower is better)
Translates to: ARHSDGRRLPLPWRVHEGKVQEM*PGGRRG
Trigger: ACCACGGCGACCTCCTGGCAACATCTCCTGGACTTT...CCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATGCCGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp AGGAGGACCTGGGGGACCTCGGACCAGGACTGTGGCCTCCTTGGATaGACCATCCACCACTGTCTGGGCCATGCATGTGTATGTCCCTCC +
Preference number: 5 (lower is better)
Translates to: RRTWGTSDQDCGLLG*TIHHCLGHACVCPS
Trigger: GGAGGGACATACACATGCATGGCCCAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACAGTCCTGGTCCGAGGTCCCCCAGGTCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp CCGGGCCAGGATGGGCAGGGCGGACGGCTGAGCTCTCCACCATCATaGTGGTGCCTCCATTTCTCACAATGTGGACTTCGGCTGGTATCC +
Preference number: 5 (lower is better)
Translates to: PGQDGQGGRLSSPPS*WCLHFSQCGLRLVS
Trigger: GGATACCAGCCGAAGTCCACATTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTGGCCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 90 bp AGGCCCTCACAGTTACATGGTACTTGGTGTTGGGGTACAGGCCGGTaGCTCGGGCACTGGAGTCTAGCCCTGCCGTCCTCACTCGGTCAG +
Preference number: 5 (lower is better)
Translates to: RPSQLHGTWCWGTGR*LGHWSLALPSSLGQ
Trigger: CTGACCGAGTGAGGACGGCAGGGCTAGACTCCAGTGCCCGAGTCACCGGCCTGTACCCCAACACCAAGTACCATGTAACTGTGAGGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp TGCCGGGGAGCCACGAAGCCCACGTGGGGACTAACTGGTGCTTCTCCAGCAAGGTCTTCAGCAGCCAGGTaGAGCTGCGCGAATTTGCTG +
Preference number: 5 (lower is better)
Translates to: CRGATKPTWGLTGASPARSSAAR*SCANLL
Trigger: CAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGA...CCTTGCTGGAGAAGCACCAGTTAGTCCCCACGTGGGCTTCGTGGCTCCCCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCGATGCCGGTACTGTTGGCTTaGCCCATGAAGTTCTCAGCA +
Preference number: 5 (lower is better)
Translates to: DGRRLPLPWRVHEGSIPMPVLLA*PMKFSA
Trigger: TGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGG...CATCGGGATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 90 bp TCGGAGAGGAACCACAGGGTCCCACTTAAGGCTGAGGCTGGAACTTaGGAAAGTCCAGGAGATGTTGCCAGGAGGTCGCCGTGGTGGGGG +
Preference number: 5 (lower is better)
Translates to: SERNHRVPLKAEAGT*ESPGDVARRSPWWG
Trigger: CCCCCACCACGGCGACCTCCTGGCAACATCTCCTGGACTTTCTCAAGTTCCAGCCTCAGCCTTAAGTGGGACCCTGTGGTTCCTCTCCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 90 bp AACCATGCAGGAGAACACCGGGCCAGGATGGGCAGGGCGGACGGCTaGGCTCTCCACCATCATGCTGGTGCCTCCATTTCTCACAATGTG +
Preference number: 5 (lower is better)
Translates to: NHAGEHRARMGRADG*ALHHHAGASISHNV
Trigger: CACATTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTGGCCCGGTGTTCTCCTGCATGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp CAGGATGGGCAGGGCGGACGGCTGAGCTCTCCACCATCATGCTGGTaGCTCCATTTCTCACAATGTGGACTTCGGCTGGTATCCCATCCC +
Preference number: 5 (lower is better)
Translates to: QDGQGGRLSSPPSCW*LHFSQCGLRLVSHP
Trigger: GGGATGGGATACCAGCCGAAGTCCACATTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp CATTCAGATGGGCGTCGCCTGCCCCTACCCTGGAGGGTCCATGAAGGGAGCATCCCAGCATCCTGTGCTTaGGTGGGACTCATGATGACC +
Preference number: 5 (lower is better)
Translates to: HSDGRRLPLPWRVHEGSIPASCA*VGLMMT
Trigger: GGTCATCATGAGTCCCACCAAAGCACAGGATGCTGG...GATGCTCCCTTCATGGACCCTCCAGGGTAGGGGCAGGCGACGCCCATCTGAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 90 bp TTGGTGCGGGCGATGTACAGGTTCCCTGTGGTCTGGGACACGAAGTaGCGCCCATCCGTTGGGATGAAGTTGGGGAACTCGTTGAGGAGC +
Preference number: 5 (lower is better)
Translates to: LVRAMYRFPVVWDTK*RPSVGMKLGNSLRS
Trigger: GCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGATGGGCGTCACTTCGTGTCCCAGACCACAGGGAACCTGTACATCGCCCGCACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 90 bp TTCCCTGGGAAAAACTCCATCCTGGAGAGGAGACCAGAGCCATTGTaGCCAGCAGCAGCAGCAGCAAGCTTGCCCTTTTCCTGGCCGGTG +
Preference number: 5 (lower is better)
Translates to: FPGKNSILERRPEPL*PAAAAASLPFSWPV
Trigger: CACCGGCCAGGAAAAGGGCAAGCTTGCTGCTGCTGCTGCTGGCCACAATGGCTCTGGTCTCCTCTCCAGGATGGAGTTTTTCCCAGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CCA 90 bp TTCCAGGTTCATCTCTGTGCCGTTCATCTTCCACCTATAGGTGGCTaGAGGGCTAGCTCGGGCACGGCACGCCAGTGTCACCTGATCCTC +
Preference number: 5 (lower is better)
Translates to: FQVHLCAVHLPPIGG*RASSGTARQCHLIL
Trigger: GAGGATCAGGTGACACTGGCGTGCCGTGCCCGAGCTAGCCCTCCAGCCACCTATAGGTGGAAGATGAACGGCACAGAGATGAACCTGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CCA 90 bp AAAGCACTCCAGGGTGACCTGCTGCCCAACCAGTGCGTACGTCTCTaGGGGGAACCGGGCTTTGATACTGGGAGCAAAGAGTCGAGGATC +
Preference number: 5 (lower is better)
Translates to: KALQGDLLPNQCVRL*GEPGFDTGSKESRI
Trigger: GATCCTCGACTCTTTGCTCCCAGTATCAAAGCCCGGTTCCCCCCAGAGACGTACGCACTGGTTGGGCAGCAGGTCACCCTGGAGTGCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp CCTGACCTTGGCTTCATTCTCTCCTGTTCACGGTCAGGCTTCTCATCCCTGCCCGTCTGGGGCCAGAGCTaGTACAGCCAGCTCAGCACT +
Preference number: 5 (lower is better)
Translates to: PDLGFILSCSRSGFSSLPVWGQS*YSQLST
Trigger: AGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGAC...GGGCAGGGATGAGAAGCCTGACCGTGAACAGGAGAGAATGAAGCCAAGGTCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 90 bp GCCCTCGATATTCACAGGATTGGTCCGAACCTGCTTCCATTTCCCTaGGGGTGGAGTCCGCGCTTGCAGGGTGTACTTGGCAATGGGGCT +
Preference number: 5 (lower is better)
Translates to: ALDIHRIGPNLLPFP*GWSPRLQGVLGNGA
Trigger: AGCCCCATTGCCAAGTACACCCTGCAAGCGCGGACTCCACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 90 bp GAAGGACAGCAGGTAGCCGAAGCCGTCTCCATTCTGGTACTCTCGTaGCATGGGAGTCCAGTTGATGGTAAGCTCTCCAGGGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: EGQQVAEAVSILVLS*HGSPVDGKLSRGSS
Trigger: GGAGGAGCCCCTGGAGAGCTTACCATCAACTGGACTCCCATGTCACGAGAGTACCAGAATGGAGACGGCTTCGGCTACCTGCTGTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp GCAGTTTCCGCGTTGCCCTCGATATTCACAGGATTGGTCCGAACCTaGTTCCATTTCCCTGAGGGTGGAGTCCGCGCTTGCAGGGTGTAC +
Preference number: 5 (lower is better)
Translates to: AVSALPSIFTGLVRT*FHFPEGGVRACRVY
Trigger: GTACACCCTGCAAGCGCGGACTCCACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGCAACGCGGAAACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 90 bp GTACAGGTTCCCTGTGGTCTGGGACACGAAGTGACGCCCATCCGTTaGGATGAAGTTGGGGAACTCGTTGAGGAGCCAGCGGTAGGACAA +
Preference number: 5 (lower is better)
Translates to: VQVPCGLGHEVTPIR*DEVGELVEEPAVGQ
Trigger: TTGTCCTACCGCTGGCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGATGGGCGTCACTTCGTGTCCCAGACCACAGGGAACCTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 90 bp CCATGGGCCGAGGCTTGCCTGCCGCAGCACAGCCCCAACGTAAGTTaGAACCAATGTCGGCTTCTGTGTCTGAGATCACCTTTAGCCACT +
Preference number: 5 (lower is better)
Translates to: PWAEACLPQHSPNVS*NQCRLLCLRSPLAT
Trigger: AGTGGCTAAAGGTGATCTCAGACACAGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 90 bp CACCATCATGCTGGTGCCTCCATTTCTCACAATGTGGACTTCGGCTaGTATCCCATCCCCTCCAGGCCCCGTGGTTCGAATCTGCACCAG +
Preference number: 5 (lower is better)
Translates to: HHHAGASISHNVDFG*YPIPSRPRGSNLHQ
Trigger: CTGGTGCAGATTCGAACCACGGGGCCTGGAGGGGATGGGATACCAGCCGAAGTCCACATTGTGAGAAATGGAGGCACCAGCATGATGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTCGGAGGACAGCTTCCTaGCTGACGACAGTGCCTACT +
Preference number: 5 (lower is better)
Translates to: EGCWTISGVHGRENDHMARRTAS*LTTVPT
Trigger: AGTAGGCACTGTCGTCAGCAAGGAAGCTGTCCTCCG...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp TGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGAGCCCTTGCTGAAGACGCTCTaGGTGGAGAAGTCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: CWTISGVHGRENDHMAEPLLKTL*VEKSRW
Trigger: CCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAA...GGGCTCAGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp TGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGAGCCCTCCACTTTGCGCCACTaGATCCTGGGAACAGGGTTC +
Preference number: 5 (lower is better)
Translates to: CWTISGVHGRENDHMAEPSTLRH*ILGTGF
Trigger: GAACCCTGTTCCCAGGATCAAGTGGCGCAAAGTGGA...GGGCTCAGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp CTGCAGATGGTACCTCTACGGCTTCCCTGTACTAGGCATTTGGATTCTAAGATCCCCTTGGCCCAGACCTaGGCAGGGGCCACCTTGGGC +
Preference number: 5 (lower is better)
Translates to: LQMVPLRLPCTRHLDSKIPLAQT*AGATLG
Trigger: GCCCAAGGTGGCCCCTGCCAAGGTCTGGGCCAAGGG...GATCTTAGAATCCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 90 bp CCAATGTCGGCTTCTGTGTCTGAGATCACCTTTAGCCACTCAGGCTaGGCTTGCACAATGATGCGTCCCTGGACGGTGTCACGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: PMSASVSEITFSHSG*ACTMMRPWTVSRPL
Trigger: CAAGGGCCGTGACACCGTCCAGGGACGCATCATTGTGCAAGCTCAGCCTGAGTGGCTAAAGGTGATCTCAGACACAGAAGCCGACATTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 90 bp AGGGTCCAGGTGAACGTGAGGTCCATAGTGGGGTCATGCGAGGCGTaGCACTGTAGGGTCAGGTTATCACCCACATTGATGTCAGCACTC +
Preference number: 5 (lower is better)
Translates to: RVQVNVRSIVGSCEA*HCRVRLSPTLMSAL
Trigger: GAGTGCTGACATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGACCCCACTATGGACCTCACGTTCACCTGGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 90 bp TCACAATGTGGACTTCGGCTGGTATCCCATCCCCTCCAGGCCCCGTaGTTCGAATCTGCACCAGAGCGTGACCAATGTCTTCAGGTACTG +
Preference number: 5 (lower is better)
Translates to: SQCGLRLVSHPLQAP*FESAPERDQCLQVL
Trigger: CAGTACCTGAAGACATTGGTCACGCTCTGGTGCAGATTCGAACCACGGGGCCTGGAGGGGATGGGATACCAGCCGAAGTCCACATTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 90 bp AAGTCATCCAGGGTCCAGGTGAACGTGAGGTCCATAGTGGGGTCATaGGAGGCGTGGCACTGTAGGGTCAGGTTATCACCCACATTGATG +
Preference number: 5 (lower is better)
Translates to: KSSRVQVNVRSIVGS*EAWHCRVRLSPTLM
Trigger: CATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGACCCCACTATGGACCTCACGTTCACCTGGACCCTGGATGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp CCCTTGTATGTGAGATGCTGGGAGCAGAAGAGGGAGGGTTTAATCAGCTCCAAGGGGTGGAGTCCGCGCTaGCAGGGTGTACTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: PLYVRCWEQKREGLISSKGWSPR*QGVLGN
Trigger: ATTGCCAAGTACACCCTGCAAGCGCGGACTCCACCC...CTTGGAGCTGATTAAACCCTCCCTCTTCTGCTCCCAGCATCTCACATACAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 90 bp ATACTGGGAGCAAAGAGTCGAGGATCTTCAGCAGCCAGGTTGAGCTaGGCGAATTTGCTGAAGACGCTCTTGGTGGAGAAGTCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: ILGAKSRGSSAARLS*ANLLKTLLVEKSRW
Trigger: CCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCGACTCTTTGCTCCCAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGTTGAGCTGCGCGAATTaGCTGAAGACGCTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLLSCAN*LKTLLV
Trigger: CACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAA...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GCTTCTGTAGTCTGGGCTGTCACTGGTAATGTACCCAGAGCTCAAGGCAGGCTGCAGCCCCAACGTAAGTaGGAACCAATGTCGGCTTCT +
Preference number: 5 (lower is better)
Translates to: ASVVWAVTGNVPRAQGRLQPQRK*EPMSAS
Trigger: AGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTG...CAGCCTGCCTTGAGCTCTGGGTACATTACCAGTGACAGCCCAGACTACAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp AGGTGGATCGATCTTGTTCATAGCTGCCTCTCTGTGCCTTGGGCTTCTGAATTTTTGGCAGGGGCCACCTaGGGCTCTTCCTCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: RWIDLVHSCLSVPWASEFLAGAT*GSSSAE
Trigger: CTCAGCAGAGGAAGAGCCCAAGGTGGCCCCTGCCAA...AAATTCAGAAGCCCAAGGCACAGAGAGGCAGCTATGAACAAGATCGATCCACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS TCA 90 bp ATCCCATCCCCTCCAGGCCCCGTGGTTCGAATCTGCACCAGAGCGTaGCCAATGTCTTCAGGTACTGGTATTTCTATCCAGTTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: IPSPPGPVVRICTRA*PMSSGTGISIQFLL
Trigger: CAGCAAGAACTGGATAGAAATACCAGTACCTGAAGACATTGGTCACGCTCTGGTGCAGATTCGAACCACGGGGCCTGGAGGGGATGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp GTGCCTTGGACTGAGAGCATCCATGTTGATCTTCTCAGCACCCTGAACCTCTTGTCCGTTGGGATGAAGTaGGGGAACTCGTTGAGGAGC +
Preference number: 5 (lower is better)
Translates to: VPWTESIHVDLLSTLNLLSVGMK*GNSLRS
Trigger: GCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGA...CAAGAGGTTCAGGGTGCTGAGAAGATCAACATGGATGCTCTCAGTCCAAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GAGGGATGCTGGACCATCTCTGGGGTTCACGGGAGGGAGAATGATCACATGGCTGCAAAGCAGGTATATTaGCCTTCATCCGATCGACTG +
Preference number: 5 (lower is better)
Translates to: EGCWTISGVHGRENDHMAAKQVY*PSSDRL
Trigger: CAGTCGATCGGATGAAGGCAAATATACCTGCTTTGC...AGCCATGTGATCATTCTCCCTCCCGTGAACCCCAGAGATGGTCCAGCATCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp ATACTGTCCCTCAACCTGGACTTTGCCATGAGAAATGGCTGTTCAGTACTGAAAGGGTGGAGTCCGCGCTaGCAGGGTGTACTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: ILSLNLDFAMRNGCSVLKGWSPR*QGVLGN
Trigger: ATTGCCAAGTACACCCTGCAAGCGCGGACTCCACCC...TTTCAGTACTGAACAGCCATTTCTCATGGCAAAGTCCAGGTTGAGGGACAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS TCA 90 bp TTGCATCTCGCACAGACAGGATCCCGGTACTGTTGGCTTTGCCCATaGAGTTCTCAGCAAAGCAGGTATATTTGCCTTCATCCGATCGAC +
Preference number: 5 (lower is better)
Translates to: LHLAQTGSRYCWLCP*SSQQSRYICLHPID
Trigger: GTCGATCGGATGAAGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp CCTTTCTGGACCTCCATTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCGGGTCTCTCTCCTCCTaGGAGAATTCCTGTAGAAAG +
Preference number: 5 (lower is better)
Translates to: PFWTSIFKTGFLCIALAVGSLSS*ENSCRK
Trigger: CTTTCTACAGGAATTCTCCAAGGAGGAGAGAGACCC...GACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATGGAGGTCCAGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp CTGCAGATGGTACCTCTACGGCTTCCCTGTACTAGGCATTTGGATTCTAAGATCAGGATCCCGGTACTGTaGGCTTTGCCCATGAAGTTC +
Preference number: 5 (lower is better)
Translates to: LQMVPLRLPCTRHLDSKIRIPVL*ALPMKF
Trigger: GAACTTCATGGGCAAAGCCAACAGTACCGGGATCCT...GATCTTAGAATCCAAATGCCTAGTACAGGGAAGCCGTAGAGGTACCATCTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp TCAGTACTGAAAAGAGCCCTACATAGATGCATACTTACTGTGTCACACCAGGAGAAAGTCCAGGAGATGTaGCCAGGAGGTCGCCGTGGT +
Preference number: 5 (lower is better)
Translates to: SVLKRALHRCILTVSHQEKVQEM*PGGRRG
Trigger: ACCACGGCGACCTCCTGGCAACATCTCCTGGACTTT...CTCCTGGTGTGACACAGTAAGTATGCATCTATGTAGGGCTCTTTTCAGTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGCCACTCAGGCTGAGCTaGCACAATGATGCGTCCCTG +
Preference number: 5 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLPLRLS*HNDASL
Trigger: CAGGGACGCATCATTGTGCAAGCTCAGCCTGAGTGG...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp TGGACATCTCATTCACACCACCACCCCACCCAGACTCAACATCCAGATCATTACTCGATATTCACAGGATaGGTCCGAACCTGCTTCCAT +
Preference number: 5 (lower is better)
Translates to: WTSHSHHHPTQTQHPDHYSIFTG*VRTCFH
Trigger: ATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGA...GTAATGATCTGGATGTTGAGTCTGGGTGGGGTGGTGGTGTGAATGAGATGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188065.7
CDS CCA 90 bp TGGTATTTCTATCCAGTTCTTGCTGGTGAGGTGGAGCATAGGAGTTaGCTGCAGGTCATTCTGATACAACATCTTGTAGCCAGTGACTGT +
Preference number: 5 (lower is better)
Translates to: WYFYPVLAGEVEHRS*LQVILIQHLVASDC
Trigger: ACAGTCACTGGCTACAAGATGTTGTATCAGAATGACCTGCAGCCAACTCCTATGCTCCACCTCACCAGCAAGAACTGGATAGAAATACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS-3UTR CAA 90 bp TCTGTTAAGGGCAAGGTATGGATAAGTCAAGCTATAAGGCTTCTTCAGCTTCTGAAGGAACCATCCACTTaGCGCCACTTGATCCTGGGA +
Preference number: 5 (lower is better)
Translates to: SVKGKVWISQAIRLLQLLKEPST*RHLILG
Trigger: TCCCAGGATCAAGTGGCGCAAAGTGGATGGTTCCTT...CAGAAGCTGAAGAAGCCTTATAGCTTGACTTATCCATACCTTGCCCTTAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS-3UTR CAA 90 bp GTTCTATCCTGTGGCAGAATAGAAATATCCTACCTCCTACGTAAAGGGTACTGTTCGATATTCACAGGATaGGTCCGAACCTGCTTCCAT +
Preference number: 5 (lower is better)
Translates to: VLSCGRIEISYLLRKGYCSIFTG*VRTCFH
Trigger: ATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGA...ACAGTACCCTTTACGTAGGAGGTAGGATATTTCTATTCTGCCACAGGATAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 72 bp CAGCGCCGGGCACCCGGGCCGTCTGCCAACTGGAGCTaGCTTGCCTGCGGAAGGACAGCAGGTAGCCGAAGC +
Preference number: 6 (lower is better)
Translates to: QRRAPGPSANWS*LACGRTAGSRS
Trigger: GCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGCGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp GCCGGGCACCCGGGCCGTCTGCCAACTGGAGCTGCCTaGCCTGCGGAAGGACAGCAGGTAGCCGAAGCCGTC +
Preference number: 6 (lower is better)
Translates to: AGHPGRLPTGAA*PAEGQQVAEAV
Trigger: GACGGCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp AGGCCAGAGGTTCCCCGTTTCTCAGCCAGCGCACCATaGGCCGAGGCTTGCCTGCCGCAGCACAGCCCCAAC +
Preference number: 6 (lower is better)
Translates to: RPEVPRFSASAP*AEACLPQHSPN
Trigger: GTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 90 bp GGTATCAGCGCCGGGCACCCGGGCCGTCTGCCAACTGGAGCTGCCTaGCCTGCGGAAGGACAGCAGGTAGCCGAAGCCGTCTCCATTCTG +
Preference number: 6 (lower is better)
Translates to: GISAGHPGRLPTGAA*PAEGQQVAEAVSIL
Trigger: CAGAATGGAGACGGCTTCGGCTACCTGCTGTCCTTCCGCAGGCAAGGCAGCTCCAGTTGGCAGACGGCCCGGGTGCCCGGCGCTGATACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 72 bp CCCCGTTTCTCAGCCAGCGCACCATGGGCCGAGGCTTaGCTGCCGCAGCACAGCCCCAACGTAAGTTGGAAC +
Preference number: 6 (lower is better)
Translates to: PRFSASAPWAEA*LPQHSPNVSWN
Trigger: GTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 72 bp CCTCGGGCTGCAGGGATCAGCCGCCTCACAGGGTTCTaGCTGAAGTCTGGGGCCAGAGCTTGTACAGCCAGC +
Preference number: 6 (lower is better)
Translates to: PRAAGISRLTGF*LKSGARACTAS
Trigger: GCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCCGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 72 bp GGGCTGGCACGGGATACTGATCTCTCCCCCTCGGGCTaGAGGGATCAGCCGCCTCACAGGGTTCTGCCTGAA +
Preference number: 6 (lower is better)
Translates to: GLARDTDLSPSG*RDQPPHRVLPE
Trigger: TTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCCGAGGGGGAGAGATCAGTATCCCGTGCCAGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp GGAGGGCTAGCTCGGGCACGGCACGCCAGTGTCACCTaGTCCTCTGCAGACTCCTCTGGGAATAGCAGGCCA +
Preference number: 6 (lower is better)
Translates to: GGLARARHASVT*SSADSSGNSRP
Trigger: TGGCCTGCTATTCCCAGAGGAGTCTGCAGAGGATCAGGTGACACTGGCGTGCCGTGCCCGAGCTAGCCCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS TCA 72 bp GGGCTGCAGGGATCAGCCGCCTCACAGGGTTCTGCCTaGAGTCTGGGGCCAGAGCTTGTACAGCCAGCTCAG +
Preference number: 6 (lower is better)
Translates to: GLQGSAASQGSA*SLGPELVQPAQ
Trigger: CTGAGCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGGCGGCTGATCCCTGCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp GGAGAACACCGGGCCAGGATGGGCAGGGCGGACGGCTaGGCTCTCCACCATCATGCTGGTGCCTCCATTTCT +
Preference number: 6 (lower is better)
Translates to: GEHRARMGRADG*ALHHHAGASIS
Trigger: AGAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATCCTGGCCCGGTGTTCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp TCCCCGTTTCTCAGCCAGCGCACCATGGGCCGAGGCTaGCCTGCCGCAGCACAGCCCCAACGTAAGTTGGAA +
Preference number: 6 (lower is better)
Translates to: SPFLSQRTMGRG*PAAAQPQRKLE
Trigger: TTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 90 bp GCCAGAGGTTCCCCGTTTCTCAGCCAGCGCACCATGGGCCGAGGCTaGCCTGCCGCAGCACAGCCCCAACGTAAGTTGGAACCAATGTCG +
Preference number: 6 (lower is better)
Translates to: ARGSPFLSQRTMGRG*PAAAQPQRKLEPMS
Trigger: CGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGTGCGCTGGCTGAGAAACGGGGAACCTCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp TCGCCGTGGTGGGGGCTTCATGGTCATGGCATCAGCTaGAGGGCTAGCTGGTCCGGTGCCAGCCCTGTTGTA +
Preference number: 6 (lower is better)
Translates to: SPWWGLHGHGIS*RASWSGASPVV
Trigger: TACAACAGGGCTGGCACCGGACCAGCTAGCCCTTCAGCTGATGCCATGACCATGAAGCCCCCACCACGGCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp CCGAGGCATTGGTGCGGGCGATGTACAGGTTCCCTGTaGTCTGGGACACGAAGTGACGCCCATCCGTTGGGA +
Preference number: 6 (lower is better)
Translates to: PRHWCGRCTGSL*SGTRSDAHPLG
Trigger: TCCCAACGGATGGGCGTCACTTCGTGTCCCAGACCACAGGGAACCTGTACATCGCCCGCACCAATGCCTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp GAGGAACCCTTGGCCCAGACCTTGGCAGGGGCCACCTaGGGCTCTTCCTCTGCTGAGTACACGATGGCAGTG +
Preference number: 6 (lower is better)
Translates to: EEPLAQTLAGAT*GSSSAEYTMAV
Trigger: CACTGCCATCGTGTACTCAGCAGAGGAAGAGCCCAAGGTGGCCCCTGCCAAGGTCTGGGCCAAGGGTTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 72 bp CCAGGCAAGAGTAGTTGCCCAGGTCCGAGGCATTGGTaGGGGCGATGTACAGGTTCCCTGTGGTCTGGGACA +
Preference number: 6 (lower is better)
Translates to: PGKSSCPGPRHW*GRCTGSLWSGT
Trigger: TGTCCCAGACCACAGGGAACCTGTACATCGCCCGCACCAATGCCTCGGACCTGGGCAACTACTCTTGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp CATCTCTGTGCCGTTCATCTTCCACCTATAGGTGGCTaGAGGGCTAGCTCGGGCACGGCACGCCAGTGTCAC +
Preference number: 6 (lower is better)
Translates to: HLCAVHLPPIGG*RASSGTARQCH
Trigger: GTGACACTGGCGTGCCGTGCCCGAGCTAGCCCTCCAGCCACCTATAGGTGGAAGATGAACGGCACAGAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CCA 72 bp CCCTGTGGTCTGGGACACGAAGTGACGCCCATCCGTTaGGATGAAGTTGGGGAACTCGTTGAGGAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: PCGLGHEVTPIR*DEVGELVEEPA
Trigger: CGCTGGCTCCTCAACGAGTTCCCCAACTTCATCCCAACGGATGGGCGTCACTTCGTGTCCCAGACCACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp CAGGGTGACCTGCTGCCCAACCAGTGCGTACGTCTCTaGGGGGAACCGGGCTTTGATACTGGGAGCAAAGAG +
Preference number: 6 (lower is better)
Translates to: QGDLLPNQCVRL*GEPGFDTGSKE
Trigger: CTCTTTGCTCCCAGTATCAAAGCCCGGTTCCCCCCAGAGACGTACGCACTGGTTGGGCAGCAGGTCACCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 72 bp AGGGTCCAGGTGAACGTGAGGTCCATAGTGGGGTCATaGGAGGCGTGGCACTGTAGGGTCAGGTTATCACCC +
Preference number: 6 (lower is better)
Translates to: RVQVNVRSIVGS*EAWHCRVRLSP
Trigger: GGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGACCCCACTATGGACCTCACGTTCACCTGGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 72 bp GATGGGCAGGGCGGACGGCTGAGCTCTCCACCATCATaGTGGTGCCTCCATTTCTCACAATGTGGACTTCGG +
Preference number: 6 (lower is better)
Translates to: DGQGGRLSSPPS*WCLHFSQCGLR
Trigger: CCGAAGTCCACATTGTGAGAAATGGAGGCACCAGCATGATGGTGGAGAGCTCAGCCGTCCGCCCTGCCCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp ACTGTGGCCTCCTTGGATGCACCATCCACCACTGTCTaGGCCATGCATGTGTATGTCCCTCCGTGGCGTAGC +
Preference number: 6 (lower is better)
Translates to: TVASLDAPSTTV*AMHVYVPPWRS
Trigger: GCTACGCCACGGAGGGACATACACATGCATGGCCCAGACAGTGGTGGATGGTGCATCCAAGGAGGCCACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp CCTCACAGGGTTCTGCCTGAAGTCTGGGGCCAGAGCTaGTACAGCCAGCTCAGCACTGGCATAGATGGTGCC +
Preference number: 6 (lower is better)
Translates to: PHRVLPEVWGQS*YSQLSTGIDGA
Trigger: GGCACCATCTATGCCAGTGCTGAGCTGGCTGTACAAGCTCTGGCCCCAGACTTCAGGCAGAACCCTGTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 90 bp ACCATGGGCCGAGGCTTGCCTGCCGCAGCACAGCCCCAACGTAAGTaGGAACCAATGTCGGCTTCTGTGTCTGAGATCACCTTTAGCCAC +
Preference number: 6 (lower is better)
Translates to: TMGRGLPAAAQPQRK*EPMSASVSEITFSH
Trigger: GTGGCTAAAGGTGATCTCAGACACAGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCGGCCCATGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp GCGATGTACAGGTTCCCTGTGGTCTGGGACACGAAGTaGCGCCCATCCGTTGGGATGAAGTTGGGGAACTCG +
Preference number: 6 (lower is better)
Translates to: AMYRFPVVWDTK*RPSVGMKLGNS
Trigger: CGAGTTCCCCAACTTCATCCCAACGGATGGGCGTCACTTCGTGTCCCAGACCACAGGGAACCTGTACATCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS GCA 72 bp GCTGGTGACGGGAACCAGGTTCCAGGTTCATCTCTGTaGCGTTCATCTTCCACCTATAGGTGGCTGGAGGGC +
Preference number: 6 (lower is better)
Translates to: AGDGNQVPGSSL*RSSSTYRWLEG
Trigger: GCCCTCCAGCCACCTATAGGTGGAAGATGAACGGCACAGAGATGAACCTGGAACCTGGTTCCCGTCACCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS GCA 72 bp GCGTTGCCCTCGATATTCACAGGATTGGTCCGAACCTaGTTCCATTTCCCTGAGGGTGGAGTCCGCGCTTGC +
Preference number: 6 (lower is better)
Translates to: ALPSIFTGLVRT*FHFPEGGVRAC
Trigger: GCAAGCGCGGACTCCACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGCAACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp ACCACTGTCTGGGCCATGCATGTGTATGTCCCTCCGTaGCGTAGCTGGGCATTCAGGATAGTCAGGTCCCCA +
Preference number: 6 (lower is better)
Translates to: TTVWAMHVYVPP*RSWAFRIVRSP
Trigger: TGGGGACCTGACTATCCTGAATGCCCAGCTACGCCACGGAGGGACATACACATGCATGGCCCAGACAGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp GCTGGTGCCTCCATTTCTCACAATGTGGACTTCGGCTaGTATCCCATCCCCTCCAGGCCCCGTGGTTCGAAT +
Preference number: 6 (lower is better)
Translates to: AGASISHNVDFG*YPIPSRPRGSN
Trigger: ATTCGAACCACGGGGCCTGGAGGGGATGGGATACCAGCCGAAGTCCACATTGTGAGAAATGGAGGCACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp GCCAGGTTGAGCTGCGCGAATTTGCTGAAGACGCTCTaGGTGGAGAAGTCCAGGTGGCTGGTAGCCAGGCAA +
Preference number: 6 (lower is better)
Translates to: ARLSCANLLKTL*VEKSRWLVARQ
Trigger: TTGCCTGGCTACCAGCCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp CGAGGCTTGCCTGCCGCAGCACAGCCCCAACGTAAGTaGGAACCAATGTCGGCTTCTGTGTCTGAGATCACC +
Preference number: 6 (lower is better)
Translates to: RGLPAAAQPQRK*EPMSASVSEIT
Trigger: GGTGATCTCAGACACAGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 90 bp GCAAAGAGTCGAGGATCTTCAGCAGCCAGGTTGAGCTGCGCGAATTaGCTGAAGACGCTCTTGGTGGAGAAGTCCAGGTGGCTGGTAGCC +
Preference number: 6 (lower is better)
Translates to: AKSRGSSAARLSCAN*LKTLLVEKSRWLVA
Trigger: GGCTACCAGCCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCGACTCTTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp GCCGCTGGGCTCCCCAGTGCCCAAGATGTTGCTAGCTaGAACCCGAAACTCATAGTCCATCCAAGGCATGAG +
Preference number: 6 (lower is better)
Translates to: AAGLPSAQDVAS*NPKLIVHPRHE
Trigger: CTCATGCCTTGGATGGACTATGAGTTTCGGGTTTCAGCTAGCAACATCTTGGGCACTGGGGAGCCCAGCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 72 bp AACCACAGGGTCCCACTTAAGGCTGAGGCTGGAACTTaGGAAAGTCCAGGAGATGTTGCCAGGAGGTCGCCG +
Preference number: 6 (lower is better)
Translates to: NHRVPLKAEAGT*ESPGDVARRSP
Trigger: CGGCGACCTCCTGGCAACATCTCCTGGACTTTCTCAAGTTCCAGCCTCAGCCTTAAGTGGGACCCTGTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp AAAGGTAGCTGGGGTTCCCTGGGAAAAACTCCATCCTaGAGAGGAGACCAGAGCCATTGTGGCCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: KGSWGSLGKTPS*RGDQSHCGQQQ
Trigger: CTGCTGCTGGCCACAATGGCTCTGGTCTCCTCTCCAGGATGGAGTTTTTCCCAGGGAACCCCAGCTACCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CCA 72 bp AGCCCTCGTGGGTTTTCACGGGGTCTCTCTCCTCCTTaGAGAATTCCTGTAGAAAGCCGAAGCGGAGGACAG +
Preference number: 6 (lower is better)
Translates to: SPRGFSRGLSPP*RIPVESRSGGQ
Trigger: CTGTCCTCCGCTTCGGCTTTCTACAGGAATTCTCCAAGGAGGAGAGAGACCCCGTGAAAACCCACGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp GAGGCTTGCCTGCCGCAGCACAGCCCCAACGTAAGTTaGAACCAATGTCGGCTTCTGTGTCTGAGATCACCT +
Preference number: 6 (lower is better)
Translates to: EACLPQHSPNVS*NQCRLLCLRSP
Trigger: AGGTGATCTCAGACACAGAAGCCGACATTGGTTCCAACTTACGTTGGGGCTGTGCTGCGGCAGGCAAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp GGGCAGTTTCCGCGTTGCCCTCGATATTCACAGGATTaGTCCGAACCTGCTTCCATTTCCCTGAGGGTGGAG +
Preference number: 6 (lower is better)
Translates to: GQFPRCPRYSQD*SEPASISLRVE
Trigger: CTCCACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGCAACGCGGAAACTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp CAGCCCTCGTGGGTTTTCACGGGGTCTCTCTCCTCCTaGGAGAATTCCTGTAGAAAGCCGAAGCGGAGGACA +
Preference number: 6 (lower is better)
Translates to: QPSWVFTGSLSS*ENSCRKPKRRT
Trigger: TGTCCTCCGCTTCGGCTTTCTACAGGAATTCTCCAAGGAGGAGAGAGACCCCGTGAAAACCCACGAGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp CGAGGATCTTCAGCAGCCAGGTTGAGCTGCGCGAATTaGCTGAAGACGCTCTTGGTGGAGAAGTCCAGGTGG +
Preference number: 6 (lower is better)
Translates to: RGSSAARLSCAN*LKTLLVEKSRW
Trigger: CCACCTGGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp TCTCCATTCTGGTACTCTCGTGACATGGGAGTCCAGTaGATGGTAAGCTCTCCAGGGGCTCCTCCCCCTCCA +
Preference number: 6 (lower is better)
Translates to: SPFWYSRDMGVQ*MVSSPGAPPPP
Trigger: TGGAGGGGGAGGAGCCCCTGGAGAGCTTACCATCAACTGGACTCCCATGTCACGAGAGTACCAGAATGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CCA 72 bp TCTTCAAAGACGGGTCCAAAGGTAGCTGGGGTTCCCTaGGAAAAACTCCATCCTGGAGAGGAGACCAGAGCC +
Preference number: 6 (lower is better)
Translates to: SSKTGPKVAGVP*EKLHPGEETRA
Trigger: GGCTCTGGTCTCCTCTCCAGGATGGAGTTTTTCCCAGGGAACCCCAGCTACCTTTGGACCCGTCTTTGAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CCA 72 bp GTGAACGTGAGGTCCATAGTGGGGTCATGCGAGGCGTaGCACTGTAGGGTCAGGTTATCACCCACATTGATG +
Preference number: 6 (lower is better)
Translates to: VNVRSIVGSCEA*HCRVRLSPTLM
Trigger: CATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGACCCCACTATGGACCTCACGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 72 bp CTGGGAGCAAAGAGTCGAGGATCTTCAGCAGCCAGGTaGAGCTGCGCGAATTTGCTGAAGACGCTCTTGGTG +
Preference number: 6 (lower is better)
Translates to: LGAKSRGSSAAR*SCANLLKTLLV
Trigger: CACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCGACTCTTTGCTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp TGGGCAGTTTCCGCGTTGCCCTCGATATTCACAGGATaGGTCCGAACCTGCTTCCATTTCCCTGAGGGTGGA +
Preference number: 6 (lower is better)
Translates to: WAVSALPSIFTG*VRTCFHFPEGG
Trigger: TCCACCCTCAGGGAAATGGAAGCAGGTTCGGACCAATCCTGTGAATATCGAGGGCAACGCGGAAACTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 90 bp GGGTCATGCGAGGCGTGGCACTGTAGGGTCAGGTTATCACCCACATaGATGTCAGCACTCGAAGGAGCTAGCGTGATCTTCGTTGCATCT +
Preference number: 6 (lower is better)
Translates to: GSCEAWHCRVRLSPT*MSALEGASVIFVAS
Trigger: AGATGCAACGAAGATCACGCTAGCTCCTTCGAGTGCTGACATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTCGCATGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS TCA 72 bp ACTGAGGGGACAAGGAACCATCCACTTTGCGCCACTTaGTCCTGGGAACAGGGTTCCCAAAGGCAAAGCACT +
Preference number: 6 (lower is better)
Translates to: TEGTRNHPLCAT*SWEQGSQRQST
Trigger: AGTGCTTTGCCTTTGGGAACCCTGTTCCCAGGATCAAGTGGCGCAAAGTGGATGGTTCCTTGTCCCCTCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp GCTTCTGTGTCTGAGATCACCTTTAGCCACTCAGGCTaGGCTTGCACAATGATGCGTCCCTGGACGGTGTCA +
Preference number: 6 (lower is better)
Translates to: ASVSEITFSHSG*ACTMMRPWTVS
Trigger: TGACACCGTCCAGGGACGCATCATTGTGCAAGCTCAGCCTGAGTGGCTAAAGGTGATCTCAGACACAGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS TCA 72 bp CCTCCAGGCCCCGTGGTTCGAATCTGCACCAGAGCGTaGCCAATGTCTTCAGGTACTGGTATTTCTATCCAG +
Preference number: 6 (lower is better)
Translates to: PPGPVVRICTRA*PMSSGTGISIQ
Trigger: CTGGATAGAAATACCAGTACCTGAAGACATTGGTCACGCTCTGGTGCAGATTCGAACCACGGGGCCTGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS GCA 72 bp TCTGCAGACTCCTCTGGGAATAGCAGGCCAACAGGTTaGTCTTCAAAGACGGGTCCAAAGGTAGCTGGGGTT +
Preference number: 6 (lower is better)
Translates to: SADSSGNSRPTG*SSKTGPKVAGV
Trigger: AACCCCAGCTACCTTTGGACCCGTCTTTGAAGAGCAACCTGTTGGCCTGCTATTCCCAGAGGAGTCTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS GCA 72 bp GCAAAGAGTCGAGGATCTTCAGCAGCCAGGTTGAGCTaGGCGAATTTGCTGAAGACGCTCTTGGTGGAGAAG +
Preference number: 6 (lower is better)
Translates to: AKSRGSSAARLS*ANLLKTLLVEK
Trigger: CTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCGACTCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp AATCTCAGTACCCTTGCTCCACAGTATTGTAGCTTTTaGAGCCGCACGGGGCTGGCACGGGATACTGATCTC +
Preference number: 6 (lower is better)
Translates to: NLSTLAPQYCSF*SRTGLARDTDL
Trigger: GAGATCAGTATCCCGTGCCAGCCCCGTGCGGCTCCAAAAGCTACAATACTGTGGAGCAAGGGTACTGAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp AATTCCTGTAGAAAGCCGAAGCGGAGGACAGCTTCCTaGCTGACGACAGTGCCTACTGGGTTAGAGGCTAGG +
Preference number: 6 (lower is better)
Translates to: NSCRKPKRRTAS*LTTVPTGLEAR
Trigger: CCTAGCCTCTAACCCAGTAGGCACTGTCGTCAGCAAGGAAGCTGTCCTCCGCTTCGGCTTTCTACAGGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp GAGGCGTGGCACTGTAGGGTCAGGTTATCACCCACATaGATGTCAGCACTCGAAGGAGCTAGCGTGATCTTC +
Preference number: 6 (lower is better)
Translates to: EAWHCRVRLSPT*MSALEGASVIF
Trigger: GAAGATCACGCTAGCTCCTTCGAGTGCTGACATCAATGTGGGTGATAACCTGACCCTACAGTGCCACGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 90 bp GCTTTGATACTGGGAGCAAAGAGTCGAGGATCTTCAGCAGCCAGGTaGAGCTGCGCGAATTTGCTGAAGACGCTCTTGGTGGAGAAGTCC +
Preference number: 6 (lower is better)
Translates to: ALILGAKSRGSSAAR*SCANLLKTLLVEKS
Trigger: GGACTTCTCCACCAAGAGCGTCTTCAGCAAATTCGCGCAGCTCAACCTGGCTGCTGAAGATCCTCGACTCTTTGCTCCCAGTATCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp AACAGGTTGCTCTTCAAAGACGGGTCCAAAGGTAGCTaGGGTTCCCTGGGAAAAACTCCATCCTGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: NRLLFKDGSKGS*GSLGKTPSWRG
Trigger: TCCTCTCCAGGATGGAGTTTTTCCCAGGGAACCCCAGCTACCTTTGGACCCGTCTTTGAAGAGCAACCTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188943.2
CDS CAA 72 bp GTCACTCTGGTACTGTTCCCCAGAATCTCAGTACCCTaGCTCCACAGTATTGTAGCTTTTGGAGCCGCACGG +
Preference number: 6 (lower is better)
Translates to: VTLVLFPRISVP*LHSIVAFGAAR
Trigger: CCGTGCGGCTCCAAAAGCTACAATACTGTGGAGCAAGGGTACTGAGATTCTGGGGAACAGTACCAGAGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp TTCGTTGCATCTCGCACAGACAGGATCCCGGTACTGTaGGCTTTGCCCATGAAGTTCTCAGCAAAGCAGGTA +
Preference number: 6 (lower is better)
Translates to: FVASRTDRIPVL*ALPMKFSAKQV
Trigger: TACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGCAACGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 90 bp AGCGTGATCTTCGTTGCATCTCGCACAGACAGGATCCCGGTACTGTaGGCTTTGCCCATGAAGTTCTCAGCAAAGCAGGTATATTTGCCT +
Preference number: 6 (lower is better)
Translates to: SVIFVASRTDRIPVL*ALPMKFSAKQVYLP
Trigger: AGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGCAACGAAGATCACGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp GCATCTCGCACAGACAGGATCCCGGTACTGTTGGCTTaGCCCATGAAGTTCTCAGCAAAGCAGGTATATTTG +
Preference number: 6 (lower is better)
Translates to: ASRTDRIPVLLA*PMKFSAKQVYL
Trigger: CAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp CCAATGTCTTCAGGTACTGGTATTTCTATCCAGTTCTaGCTGGTGAGGTGGAGCATAGGAGTTGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: PMSSGTGISIQF*LVRWSIGVGCR
Trigger: CCTGCAGCCAACTCCTATGCTCCACCTCACCAGCAAGAACTGGATAGAAATACCAGTACCTGAAGACATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 90 bp ATCTTCGTTGCATCTCGCACAGACAGGATCCCGGTACTGTTGGCTTaGCCCATGAAGTTCTCAGCAAAGCAGGTATATTTGCCTTCATCC +
Preference number: 6 (lower is better)
Translates to: IFVASRTDRIPVLLA*PMKFSAKQVYLPSS
Trigger: GGATGAAGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTACCGGGATCCTGTCTGTGCGAGATGCAACGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CCA 72 bp TATCCAGTTCTTGCTGGTGAGGTGGAGCATAGGAGTTaGCTGCAGGTCATTCTGATACAACATCTTGTAGCC +
Preference number: 6 (lower is better)
Translates to: YPVLAGEVEHRS*LQVILIQHLVA
Trigger: GGCTACAAGATGTTGTATCAGAATGACCTGCAGCCAACTCCTATGCTCCACCTCACCAGCAAGAACTGGATA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086521.11
ENSMUST00000188065.7
CDS CAA 90 bp GTACTGTTGGCTTTGCCCATGAAGTTCTCAGCAAAGCAGGTATATTaGCCTTCATCCGATCGACTGATGTTTCTGATAATCAAGGTGCCG +
Preference number: 6 (lower is better)
Translates to: VLLALPMKFSAKQVY*PSSDRLMFLIIKVP
Trigger: CGGCACCTTGATTATCAGAAACATCAGTCGATCGGATGAAGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGCCAACAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11
CDS CAA 72 bp GCTTTGCCCATGAAGTTCTCAGCAAAGCAGGTATATTaGCCTTCATCCGATCGACTGATGTTTCTGATAATC +
Preference number: 6 (lower is better)
Translates to: ALPMKFSAKQVY*PSSDRLMFLII
Trigger: GATTATCAGAAACATCAGTCGATCGGATGAAGGCAAATATACCTGCTTTGCTGAGAACTTCATGGGCAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086521.11